rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5

data/doc/js/app.js

@@ -1,219 +0,0 @@
-function createSourceLinks() {
-    $('.method_details_list .source_code').
-        before("<span class='showSource'>[<a href='#' class='toggleSource'>View source</a>]</span>");
-    $('.toggleSource').toggle(function() {
-       $(this).parent().nextAll('.source_code').slideDown(100);
-       $(this).text("Hide source");
-    },
-    function() {
-        $(this).parent().nextAll('.source_code').slideUp(100);
-        $(this).text("View source");
-    });
-}
-
-function createDefineLinks() {
-    var tHeight = 0;
-    $('.defines').after(" <a href='#' class='toggleDefines'>more...</a>");
-    $('.toggleDefines').toggle(function() {
-        tHeight = $(this).parent().prev().height();
-        $(this).prev().show();
-        $(this).parent().prev().height($(this).parent().height());
-        $(this).text("(less)");
-    },
-    function() {
-        $(this).prev().hide();
-        $(this).parent().prev().height(tHeight);
-        $(this).text("more...");
-    });
-}
-
-function createFullTreeLinks() {
-    var tHeight = 0;
-    $('.inheritanceTree').toggle(function() {
-        tHeight = $(this).parent().prev().height();
-        $(this).parent().toggleClass('showAll');
-        $(this).text("(hide)");
-        $(this).parent().prev().height($(this).parent().height());
-    },
-    function() {
-        $(this).parent().toggleClass('showAll');
-        $(this).parent().prev().height(tHeight);
-        $(this).text("show all");
-    });
-}
-
-function fixBoxInfoHeights() {
-    $('dl.box dd.r1, dl.box dd.r2').each(function() {
-       $(this).prev().height($(this).height());
-    });
-}
-
-function searchFrameLinks() {
-  $('.full_list_link').click(function() {
-    toggleSearchFrame(this, $(this).attr('href'));
-    return false;
-  });
-}
-
-function toggleSearchFrame(id, link) {
-  var frame = $('#search_frame');
-  $('#search a').removeClass('active').addClass('inactive');
-  if (frame.attr('src') == link && frame.css('display') != "none") {
-    frame.slideUp(100);
-    $('#search a').removeClass('active inactive');
-  }
-  else {
-    $(id).addClass('active').removeClass('inactive');
-    frame.attr('src', link).slideDown(100);
-  }
-}
-
-function linkSummaries() {
-  $('.summary_signature').click(function() {
-    document.location = $(this).find('a').attr('href');
-  });
-}
-
-function framesInit() {
-  if (hasFrames) {
-    document.body.className = 'frames';
-    $('#menu .noframes a').attr('href', document.location);
-    try {
-      window.top.document.title = $('html head title').text();
-    } catch(error) {
-      // some browsers will not allow this when serving from file://
-      // but we don't want to stop the world.
-    }
-  }
-  else {
-    $('#menu .noframes a').text('frames').attr('href', framesUrl);
-  }
-}
-
-function keyboardShortcuts() {
-  if (window.top.frames.main) return;
-  $(document).keypress(function(evt) {
-    if (evt.altKey || evt.ctrlKey || evt.metaKey || evt.shiftKey) return;
-    if (typeof evt.target !== "undefined" &&
-        (evt.target.nodeName == "INPUT" ||
-        evt.target.nodeName == "TEXTAREA")) return;
-    switch (evt.charCode) {
-      case 67: case 99:  $('#class_list_link').click(); break;  // 'c'
-      case 77: case 109: $('#method_list_link').click(); break; // 'm'
-      case 70: case 102: $('#file_list_link').click(); break;   // 'f'
-      default: break;
-    }
-  });
-}
-
-function summaryToggle() {
-  $('.summary_toggle').click(function() {
-    if (localStorage) {
-      localStorage.summaryCollapsed = $(this).text();
-    }
-    $('.summary_toggle').each(function() {
-      $(this).text($(this).text() == "collapse" ? "expand" : "collapse");
-      var next = $(this).parent().parent().nextAll('ul.summary').first();
-      if (next.hasClass('compact')) {
-        next.toggle();
-        next.nextAll('ul.summary').first().toggle();
-      }
-      else if (next.hasClass('summary')) {
-        var list = $('<ul class="summary compact" />');
-        list.html(next.html());
-        list.find('.summary_desc, .note').remove();
-        list.find('a').each(function() {
-          $(this).html($(this).find('strong').html());
-          $(this).parent().html($(this)[0].outerHTML);
-        });
-        next.before(list);
-        next.toggle();
-      }
-    });
-    return false;
-  });
-  if (localStorage) {
-    if (localStorage.summaryCollapsed == "collapse") {
-      $('.summary_toggle').first().click();
-    }
-    else localStorage.summaryCollapsed = "expand";
-  }
-}
-
-function fixOutsideWorldLinks() {
-  $('a').each(function() {
-    if (window.location.host != this.host) this.target = '_parent';
-  });
-}
-
-function generateTOC() {
-  if ($('#filecontents').length === 0) return;
-  var _toc = $('<ol class="top"></ol>');
-  var show = false;
-  var toc = _toc;
-  var counter = 0;
-  var tags = ['h2', 'h3', 'h4', 'h5', 'h6'];
-  var i;
-  if ($('#filecontents h1').length > 1) tags.unshift('h1');
-  for (i = 0; i < tags.length; i++) { tags[i] = '#filecontents ' + tags[i]; }
-  var lastTag = parseInt(tags[0][1], 10);
-  $(tags.join(', ')).each(function() {
-    if ($(this).parents('.method_details .docstring').length != 0) return;
-    if (this.id == "filecontents") return;
-    show = true;
-    var thisTag = parseInt(this.tagName[1], 10);
-    if (this.id.length === 0) {
-      var proposedId = $(this).attr('toc-id');
-      if (typeof(proposedId) != "undefined") this.id = proposedId;
-      else {
-        var proposedId = $(this).text().replace(/[^a-z0-9-]/ig, '_');
-        if ($('#' + proposedId).length > 0) { proposedId += counter; counter++; }
-        this.id = proposedId;
-      }
-    }
-    if (thisTag > lastTag) {
-      for (i = 0; i < thisTag - lastTag; i++) {
-        var tmp = $('<ol/>'); toc.append(tmp); toc = tmp;
-      }
-    }
-    if (thisTag < lastTag) {
-      for (i = 0; i < lastTag - thisTag; i++) toc = toc.parent();
-    }
-    var title = $(this).attr('toc-title');
-    if (typeof(title) == "undefined") title = $(this).text();
-    toc.append('<li><a href="#' + this.id + '">' + title + '</a></li>');
-    lastTag = thisTag;
-  });
-  if (!show) return;
-  html = '<div id="toc"><p class="title"><a class="hide_toc" href="#"><strong>Table of Contents</strong></a> <small>(<a href="#" class="float_toc">left</a>)</small></p></div>';
-  $('#content').prepend(html);
-  $('#toc').append(_toc);
-  $('#toc .hide_toc').toggle(function() {
-    $('#toc .top').slideUp('fast');
-    $('#toc').toggleClass('hidden');
-    $('#toc .title small').toggle();
-  }, function() {
-    $('#toc .top').slideDown('fast');
-    $('#toc').toggleClass('hidden');
-    $('#toc .title small').toggle();
-  });
-  $('#toc .float_toc').toggle(function() {
-    $(this).text('float');
-    $('#toc').toggleClass('nofloat');
-  }, function() {
-    $(this).text('left');
-    $('#toc').toggleClass('nofloat');
-  });
-}
-
-$(framesInit);
-$(createSourceLinks);
-$(createDefineLinks);
-$(createFullTreeLinks);
-$(fixBoxInfoHeights);
-$(searchFrameLinks);
-$(linkSummaries);
-$(keyboardShortcuts);
-$(summaryToggle);
-$(fixOutsideWorldLinks);
-$(generateTOC);

data/doc/js/full_list.js

@@ -1,178 +0,0 @@
-var inSearch = null;
-var searchIndex = 0;
-var searchCache = [];
-var searchString = '';
-var regexSearchString = '';
-var caseSensitiveMatch = false;
-var ignoreKeyCodeMin = 8;
-var ignoreKeyCodeMax = 46;
-var commandKey = 91;
-
-RegExp.escape = function(text) {
-    return text.replace(/[-[\]{}()*+?.,\\^$|#\s]/g, "\\$&");
-}
-
-function fullListSearch() {
-  // generate cache
-  searchCache = [];
-  $('#full_list li').each(function() {
-    var link = $(this).find('.object_link a');
-    if (link.length === 0) return;
-    var fullName = link.attr('title').split(' ')[0];
-    searchCache.push({name:link.text(), fullName:fullName, node:$(this), link:link});
-  });
-
-  $('#search input').keyup(function(event) {
-    if ((event.keyCode > ignoreKeyCodeMin && event.keyCode < ignoreKeyCodeMax)
-         || event.keyCode == commandKey)
-      return;
-    searchString = this.value;
-    caseSensitiveMatch = searchString.match(/[A-Z]/) != null;
-    regexSearchString = RegExp.escape(searchString);
-    if (caseSensitiveMatch) {
-      regexSearchString += "|" +
-        $.map(searchString.split(''), function(e) { return RegExp.escape(e); }).
-        join('.+?');
-    }
-    if (searchString === "") {
-      clearTimeout(inSearch);
-      inSearch = null;
-      $('ul .search_uncollapsed').removeClass('search_uncollapsed');
-      $('#full_list, #content').removeClass('insearch');
-      $('#full_list li').removeClass('found').each(function() {
-
-        var link = $(this).find('.object_link a');
-        if (link.length > 0) link.text(link.text());
-      });
-      if (clicked) {
-        clicked.parents('ul').each(function() {
-          $(this).removeClass('collapsed').prev().removeClass('collapsed');
-        });
-      }
-      highlight();
-    }
-    else {
-      if (inSearch) clearTimeout(inSearch);
-      searchIndex = 0;
-      lastRowClass = '';
-      $('#full_list, #content').addClass('insearch');
-      $('#noresults').text('');
-      searchItem();
-    }
-  });
-
-  $('#search input').focus();
-  $('#full_list').after("<div id='noresults'></div>");
-}
-
-var lastRowClass = '';
-function searchItem() {
-  for (var i = 0; i < searchCache.length / 50; i++) {
-    var item = searchCache[searchIndex];
-    var searchName = (searchString.indexOf('::') != -1 ? item.fullName : item.name);
-    var matchString = regexSearchString;
-    var matchRegexp = new RegExp(matchString, caseSensitiveMatch ? "" : "i");
-    if (searchName.match(matchRegexp) == null) {
-      item.node.removeClass('found');
-    }
-    else {
-      item.node.css('padding-left', '10px').addClass('found');
-      item.node.parents().addClass('search_uncollapsed');
-      item.node.removeClass(lastRowClass).addClass(lastRowClass == 'r1' ? 'r2' : 'r1');
-      lastRowClass = item.node.hasClass('r1') ? 'r1' : 'r2';
-      item.link.html(item.name.replace(matchRegexp, "<strong>$&</strong>"));
-    }
-
-    if (searchCache.length === searchIndex + 1) {
-      searchDone();
-      return;
-    }
-    else {
-      searchIndex++;
-    }
-  }
-  inSearch = setTimeout('searchItem()', 0);
-}
-
-function searchDone() {
-  highlight(true);
-  if ($('#full_list li:visible').size() === 0) {
-    $('#noresults').text('No results were found.').hide().fadeIn();
-  }
-  else {
-    $('#noresults').text('');
-  }
-  $('#content').removeClass('insearch');
-  clearTimeout(inSearch);
-  inSearch = null;
-}
-
-clicked = null;
-function linkList() {
-  $('#full_list li, #full_list li a:last').click(function(evt) {
-    if ($(this).hasClass('toggle')) return true;
-    if (this.tagName.toLowerCase() == "li") {
-      if ($(this).find('.object_link a').length === 0) {
-        $(this).children('a.toggle').click();
-        return false;
-      }
-      var toggle = $(this).children('a.toggle');
-      if (toggle.size() > 0 && evt.pageX < toggle.offset().left) {
-        toggle.click();
-        return false;
-      }
-    }
-    if (clicked) clicked.removeClass('clicked');
-    var win = window.top.frames.main ? window.top.frames.main : window.parent;
-    if (this.tagName.toLowerCase() == "a") {
-      clicked = $(this).parents('li').addClass('clicked');
-      win.location = this.href;
-    }
-    else {
-      clicked = $(this).addClass('clicked');
-      win.location = $(this).find('a:last').attr('href');
-    }
-    return false;
-  });
-}
-
-function collapse() {
-  if (!$('#full_list').hasClass('class')) return;
-  $('#full_list.class a.toggle').click(function() {
-    $(this).parent().toggleClass('collapsed').next().toggleClass('collapsed');
-    highlight();
-    return false;
-  });
-  $('#full_list.class ul').each(function() {
-    $(this).addClass('collapsed').prev().addClass('collapsed');
-  });
-  $('#full_list.class').children().removeClass('collapsed');
-  highlight();
-}
-
-function highlight(no_padding) {
-  var n = 1;
-  $('#full_list li:visible').each(function() {
-    var next = n == 1 ? 2 : 1;
-    $(this).removeClass("r" + next).addClass("r" + n);
-    if (!no_padding && $('#full_list').hasClass('class')) {
-      $(this).css('padding-left', (10 + $(this).parents('ul').size() * 15) + 'px');
-    }
-    n = next;
-  });
-}
-
-function escapeShortcut() {
-  $(document).keydown(function(evt) {
-    if (evt.which == 27) {
-      $('#search_frame', window.top.document).slideUp(100);
-      $('#search a', window.top.document).removeClass('active inactive');
-      $(window.top).focus();
-    }
-  });
-}
-
-$(escapeShortcut);
-$(fullListSearch);
-$(linkList);
-$(collapse);

data/doc/js/jquery.js

@@ -1,4 +0,0 @@
-/*! jQuery v1.7.1 jquery.com | jquery.org/license */
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data/doc/method_list.html

@@ -1,1415 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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-    
-      <script type="text/javascript" charset="utf-8" src="js/full_list.js"></script>
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-    <title>Method List</title>
-    <base id="base_target" target="_parent" />
-  </head>
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-    <script type="text/javascript" charset="utf-8">
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-      <h1 id="full_list_header">Method List</h1>
-      <div id="nav">
-        
-          <span><a target="_self" href="class_list.html">
-            Classes
-          </a></span>
-        
-          <span><a target="_self" href="method_list.html">
-            Methods
-          </a></span>
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-            Files
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-      <div id="search">Search: <input type="text" /></div>
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-      <ul id="full_list" class="method">
-        
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Graph.html#%3C%3C-instance_method" title="NEAT::Graph#&lt;&lt; (method)">#&lt;&lt;</a></span>
-    <small>NEAT::Graph</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Phenotype.html#%5B%5D-class_method" title="NEAT::Critter::Phenotype.[] (method)">[]</a></span>
-    <small>NEAT::Critter::Phenotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Graph/DependencyResolver.html#%5B%5D-class_method" title="NEAT::Graph::DependencyResolver.[] (method)">[]</a></span>
-    <small>NEAT::Graph::DependencyResolver</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#%5B%5D-class_method" title="NEAT::Critter::Genotype::Gene.[] (method)">[]</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Graph.html#add-instance_method" title="NEAT::Graph#add (method)">#add</a></span>
-    <small>NEAT::Graph</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver/CritterOp.html#add_gene%21-instance_method" title="NEAT::Evolver::CritterOp#add_gene! (method)">#add_gene!</a></span>
-    <small>NEAT::Evolver::CritterOp</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#add_genes-instance_method" title="NEAT::Critter::Genotype#add_genes (method)">#add_genes</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver/CritterOp.html#add_neuron%21-instance_method" title="NEAT::Evolver::CritterOp#add_neuron! (method)">#add_neuron!</a></span>
-    <small>NEAT::Evolver::CritterOp</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#add_neurons-instance_method" title="NEAT::Critter::Genotype#add_neurons (method)">#add_neurons</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#age_significance-instance_method" title="NEAT::Controller::NeatSettings#age_significance (method)">#age_significance</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#analyze%21-instance_method" title="NEAT::Population#analyze! (method)">#analyze!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evaluator.html#analyze_for_fitness%21-instance_method" title="NEAT::Evaluator#analyze_for_fitness! (method)">#analyze_for_fitness!</a></span>
-    <small>NEAT::Evaluator</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#babies_stolen-instance_method" title="NEAT::Controller::NeatSettings#babies_stolen (method)">#babies_stolen</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#best_critter-instance_method" title="NEAT::Population#best_critter (method)">#best_critter</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/BiasNeuron.html#bias%3F-class_method" title="NEAT::BasicNeuronTypes::BiasNeuron.bias? (method)">bias?</a></span>
-    <small>NEAT::BasicNeuronTypes::BiasNeuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#bias%3F-class_method" title="NEAT::Neuron.bias? (method)">bias?</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#bias%3F-instance_method" title="NEAT::Neuron#bias? (method)">#bias?</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Graph.html#clear_graph-instance_method" title="NEAT::Graph#clear_graph (method)">#clear_graph</a></span>
-    <small>NEAT::Graph</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Phenotype.html#code-instance_method" title="NEAT::Critter::Phenotype#code (method)">#code</a></span>
-    <small>NEAT::Critter::Phenotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#compactify%21-class_method" title="NEAT::Population.compactify! (method)">compactify!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#compare-instance_method" title="NEAT::DSL#compare (method)">#compare</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter.html#compare-instance_method" title="NEAT::Critter#compare (method)">#compare</a></span>
-    <small>NEAT::Critter</small>
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-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#compare_func-instance_method" title="NEAT::Controller#compare_func (method)">#compare_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#compatibility_threshold-instance_method" title="NEAT::Controller::NeatSettings#compatibility_threshold (method)">#compatibility_threshold</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
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-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#condition_boolean_vector-instance_method" title="NEAT::DSL#condition_boolean_vector (method)">#condition_boolean_vector</a></span>
-    <small>NEAT::DSL</small>
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-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>
-    <small>NEAT::NeatOb</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT.html#controller-class_method" title="NEAT.controller (method)">controller</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT.html#controller%3D-class_method" title="NEAT.controller= (method)">controller=</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#cost-instance_method" title="NEAT::DSL#cost (method)">#cost</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#cost_func-instance_method" title="NEAT::Controller#cost_func (method)">#cost_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT.html#create_controller-class_method" title="NEAT.create_controller (method)">create_controller</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#critter-instance_method" title="NEAT::Critter::Genotype#critter (method)">#critter</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Phenotype.html#critter-instance_method" title="NEAT::Critter::Phenotype#critter (method)">#critter</a></span>
-    <small>NEAT::Critter::Phenotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#critters-instance_method" title="NEAT::Population#critters (method)">#critters</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#dangling_neurons-instance_method" title="NEAT::Critter::Genotype#dangling_neurons (method)">#dangling_neurons</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/DSL.html#define-instance_method" title="NEAT::DSL#define (method)">#define</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Evolver/CritterOp.html#disable_gene%21-instance_method" title="NEAT::Evolver::CritterOp#disable_gene! (method)">#disable_gene!</a></span>
-    <small>NEAT::Evolver::CritterOp</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#disabled%3F-instance_method" title="NEAT::Critter::Genotype::Gene#disabled? (method)">#disabled?</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#disjoint_coefficient-instance_method" title="NEAT::Controller::NeatSettings#disjoint_coefficient (method)">#disjoint_coefficient</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT.html#dpp-class_method" title="NEAT.dpp (method)">dpp</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#dropoff_age-instance_method" title="NEAT::Controller::NeatSettings#dropoff_age (method)">#dropoff_age</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#dump_s-instance_method" title="NEAT::Critter::Genotype#dump_s (method)">#dump_s</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#dump_s-instance_method" title="NEAT::Critter#dump_s (method)">#dump_s</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#dump_s-instance_method" title="NEAT::Population#dump_s (method)">#dump_s</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#enabled-instance_method" title="NEAT::Critter::Genotype::Gene#enabled (method)">#enabled</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#enabled%3F-instance_method" title="NEAT::Critter::Genotype::Gene#enabled? (method)">#enabled?</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#end_run_func-instance_method" title="NEAT::Controller#end_run_func (method)">#end_run_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#end_sequence_at-instance_method" title="NEAT::Controller::NeatSettings#end_sequence_at (method)">#end_sequence_at</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#evaluate%21-instance_method" title="NEAT::Population#evaluate! (method)">#evaluate!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evaluator.html#evaluate%21-instance_method" title="NEAT::Evaluator#evaluate! (method)">#evaluate!</a></span>
-    <small>NEAT::Evaluator</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#evaluate%21-instance_method" title="NEAT::Critter#evaluate! (method)">#evaluate!</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#evaluate%21-class_method" title="NEAT::Population.evaluate! (method)">evaluate!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#evaluator-instance_method" title="NEAT::Controller#evaluator (method)">#evaluator</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#evaluator_class-instance_method" title="NEAT::Controller#evaluator_class (method)">#evaluator_class</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#evolve-instance_method" title="NEAT::Population#evolve (method)">#evolve</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/DSL.html#evolve-instance_method" title="NEAT::DSL#evolve (method)">#evolve</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Evolver.html#evolve-instance_method" title="NEAT::Evolver#evolve (method)">#evolve</a></span>
-    <small>NEAT::Evolver</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#evolved_substrate_switch-instance_method" title="NEAT::Controller::NeatSettings#evolved_substrate_switch (method)">#evolved_substrate_switch</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#evolver-instance_method" title="NEAT::Controller#evolver (method)">#evolver</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#evolver_class-instance_method" title="NEAT::Controller#evolver_class (method)">#evolver_class</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#excess_coefficient-instance_method" title="NEAT::Controller::NeatSettings#excess_coefficient (method)">#excess_coefficient</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/TanhNeuron.html#express-instance_method" title="NEAT::BasicNeuronTypes::TanhNeuron#express (method)">#express</a></span>
-    <small>NEAT::BasicNeuronTypes::TanhNeuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/SigmoidNeuron.html#express-instance_method" title="NEAT::BasicNeuronTypes::SigmoidNeuron#express (method)">#express</a></span>
-    <small>NEAT::BasicNeuronTypes::SigmoidNeuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#express-instance_method" title="NEAT::Neuron#express (method)">#express</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/BiasNeuron.html#express-instance_method" title="NEAT::BasicNeuronTypes::BiasNeuron#express (method)">#express</a></span>
-    <small>NEAT::BasicNeuronTypes::BiasNeuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/SineNeuron.html#express-instance_method" title="NEAT::BasicNeuronTypes::SineNeuron#express (method)">#express</a></span>
-    <small>NEAT::BasicNeuronTypes::SineNeuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/CosineNeuron.html#express-instance_method" title="NEAT::BasicNeuronTypes::CosineNeuron#express (method)">#express</a></span>
-    <small>NEAT::BasicNeuronTypes::CosineNeuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/InputNeuron.html#express-instance_method" title="NEAT::BasicNeuronTypes::InputNeuron#express (method)">#express</a></span>
-    <small>NEAT::BasicNeuronTypes::InputNeuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Phenotype.html#express%21-instance_method" title="NEAT::Critter::Phenotype#express! (method)">#express!</a></span>
-    <small>NEAT::Critter::Phenotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Expressor.html#express%21-instance_method" title="NEAT::Expressor#express! (method)">#express!</a></span>
-    <small>NEAT::Expressor</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#express%21-instance_method" title="NEAT::Population#express! (method)">#express!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter.html#express%21-instance_method" title="NEAT::Critter#express! (method)">#express!</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#expressor-instance_method" title="NEAT::Controller#expressor (method)">#expressor</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#expressor_class-instance_method" title="NEAT::Controller#expressor_class (method)">#expressor_class</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#feature_selection_switch-instance_method" title="NEAT::Controller::NeatSettings#feature_selection_switch (method)">#feature_selection_switch</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter.html#fitness-instance_method" title="NEAT::Critter#fitness (method)">#fitness</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#fitness-instance_method" title="NEAT::Population#fitness (method)">#fitness</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/DSL.html#fitness-instance_method" title="NEAT::DSL#fitness (method)">#fitness</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#fitness_cost-instance_method" title="NEAT::Critter::Genotype#fitness_cost (method)">#fitness_cost</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#fitness_cost_per_gene-instance_method" title="NEAT::Controller::NeatSettings#fitness_cost_per_gene (method)">#fitness_cost_per_gene</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#fitness_cost_per_neuron-instance_method" title="NEAT::Controller::NeatSettings#fitness_cost_per_neuron (method)">#fitness_cost_per_neuron</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#fitness_func-instance_method" title="NEAT::Controller#fitness_func (method)">#fitness_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#forget%21-instance_method" title="NEAT::Critter::Genotype#forget! (method)">#forget!</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#gaussian-instance_method" title="NEAT::Controller#gaussian (method)">#gaussian</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT.html#gaussian-class_method" title="NEAT.gaussian (method)">gaussian</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver.html#gen_initial_genes%21-instance_method" title="NEAT::Evolver#gen_initial_genes! (method)">#gen_initial_genes!</a></span>
-    <small>NEAT::Evolver</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#generation_num-instance_method" title="NEAT::Controller#generation_num (method)">#generation_num</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#genes-instance_method" title="NEAT::Critter::Genotype#genes (method)">#genes</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#genotype-instance_method" title="NEAT::Critter::Genotype::Gene#genotype (method)">#genotype</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter.html#genotype-instance_method" title="NEAT::Critter#genotype (method)">#genotype</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#genotype-instance_method" title="NEAT::Neuron#genotype (method)">#genotype</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#glob_innov_num-instance_method" title="NEAT::Controller#glob_innov_num (method)">#glob_innov_num</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#hash_on_fitness-instance_method" title="NEAT::Controller::NeatSettings#hash_on_fitness (method)">#hash_on_fitness</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#heirarchy_number-instance_method" title="NEAT::Neuron#heirarchy_number (method)">#heirarchy_number</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#hidden_neurons-instance_method" title="NEAT::Population#hidden_neurons (method)">#hidden_neurons</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#hyper_switch-instance_method" title="NEAT::Controller::NeatSettings#hyper_switch (method)">#hyper_switch</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#in_neuron-instance_method" title="NEAT::Critter::Genotype::Gene#in_neuron (method)">#in_neuron</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#inherited-class_method" title="NEAT::Neuron.inherited (method)">inherited</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#initialize-instance_method" title="NEAT::Critter::Genotype#initialize (method)">#initialize</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver.html#initialize-instance_method" title="NEAT::Evolver#initialize (method)">#initialize</a></span>
-    <small>NEAT::Evolver</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#initialize-instance_method" title="NEAT::Population#initialize (method)">#initialize</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/BiasNeuron.html#initialize-instance_method" title="NEAT::BasicNeuronTypes::BiasNeuron#initialize (method)">#initialize</a></span>
-    <small>NEAT::BasicNeuronTypes::BiasNeuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Expressor.html#initialize-instance_method" title="NEAT::Expressor#initialize (method)">#initialize</a></span>
-    <small>NEAT::Expressor</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#initialize-instance_method" title="NEAT::Controller#initialize (method)">#initialize</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#initialize-instance_method" title="NEAT::Controller::NeatSettings#initialize (method)">#initialize</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#initialize-instance_method" title="NEAT::Critter::Genotype::Gene#initialize (method)">#initialize</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Graph/DependencyResolver.html#initialize-instance_method" title="NEAT::Graph::DependencyResolver#initialize (method)">#initialize</a></span>
-    <small>NEAT::Graph::DependencyResolver</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/NeatOb.html#initialize-instance_method" title="NEAT::NeatOb#initialize (method)">#initialize</a></span>
-    <small>NEAT::NeatOb</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#initialize-instance_method" title="NEAT::Critter#initialize (method)">#initialize</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver/CritterOp.html#initialize-instance_method" title="NEAT::Evolver::CritterOp#initialize (method)">#initialize</a></span>
-    <small>NEAT::Evolver::CritterOp</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#initialize_for_recurrence%21-instance_method" title="NEAT::Population#initialize_for_recurrence! (method)">#initialize_for_recurrence!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter.html#initialize_neurons%21-instance_method" title="NEAT::Critter#initialize_neurons! (method)">#initialize_neurons!</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#innervate%21-instance_method" title="NEAT::Critter::Genotype#innervate! (method)">#innervate!</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#innovation-instance_method" title="NEAT::Critter::Genotype::Gene#innovation (method)">#innovation</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#input%3F-class_method" title="NEAT::Neuron.input? (method)">input?</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#input%3F-instance_method" title="NEAT::Neuron#input? (method)">#input?</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/InputNeuron.html#input%3F-class_method" title="NEAT::BasicNeuronTypes::InputNeuron.input? (method)">input?</a></span>
-    <small>NEAT::BasicNeuronTypes::InputNeuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#input_neurons-instance_method" title="NEAT::Population#input_neurons (method)">#input_neurons</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Graph.html#inputs-instance_method" title="NEAT::Graph#inputs (method)">#inputs</a></span>
-    <small>NEAT::Graph</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#interspecies_mate_rate-instance_method" title="NEAT::Controller::NeatSettings#interspecies_mate_rate (method)">#interspecies_mate_rate</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#linktrait_mutation_sig-instance_method" title="NEAT::Controller::NeatSettings#linktrait_mutation_sig (method)">#linktrait_mutation_sig</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>
-    <small>NEAT::NeatOb</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#log-instance_method" title="NEAT::Controller#log (method)">#log</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>
-    <small>NEAT::NeatOb</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mate_multipoint_avg_prob-instance_method" title="NEAT::Controller::NeatSettings#mate_multipoint_avg_prob (method)">#mate_multipoint_avg_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mate_multipoint_prob-instance_method" title="NEAT::Controller::NeatSettings#mate_multipoint_prob (method)">#mate_multipoint_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mate_only_prob-instance_method" title="NEAT::Controller::NeatSettings#mate_only_prob (method)">#mate_only_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mate_singlepoint_prob-instance_method" title="NEAT::Controller::NeatSettings#mate_singlepoint_prob (method)">#mate_singlepoint_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#max_generations-instance_method" title="NEAT::Controller::NeatSettings#max_generations (method)">#max_generations</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#max_population_history-instance_method" title="NEAT::Controller::NeatSettings#max_population_history (method)">#max_population_history</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#max_species-instance_method" title="NEAT::Controller::NeatSettings#max_species (method)">#max_species</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#member%3F-class_method" title="NEAT::Population.member? (method)">member?</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#method_missing-instance_method" title="NEAT::DSL#method_missing (method)">#method_missing</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver.html#mutate%21-instance_method" title="NEAT::Evolver#mutate! (method)">#mutate!</a></span>
-    <small>NEAT::Evolver</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#mutate%21-instance_method" title="NEAT::Population#mutate! (method)">#mutate!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_add_gene_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_add_gene_prob (method)">#mutate_add_gene_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_add_neuron_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_add_neuron_prob (method)">#mutate_add_neuron_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_change_gene_weights_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_change_gene_weights_prob (method)">#mutate_change_gene_weights_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_change_gene_weights_sd-instance_method" title="NEAT::Controller::NeatSettings#mutate_change_gene_weights_sd (method)">#mutate_change_gene_weights_sd</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_gene_disable_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_gene_disable_prob (method)">#mutate_gene_disable_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_gene_reenable_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_gene_reenable_prob (method)">#mutate_gene_reenable_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_gene_trait_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_gene_trait_prob (method)">#mutate_gene_trait_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_neuron_trait_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_neuron_trait_prob (method)">#mutate_neuron_trait_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_only_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_only_prob (method)">#mutate_only_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_perturb_gene_weights_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_perturb_gene_weights_prob (method)">#mutate_perturb_gene_weights_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_perturb_gene_weights_sd-instance_method" title="NEAT::Controller::NeatSettings#mutate_perturb_gene_weights_sd (method)">#mutate_perturb_gene_weights_sd</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_random_trait_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_random_trait_prob (method)">#mutate_random_trait_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutate_toggle_enable_prob-instance_method" title="NEAT::Controller::NeatSettings#mutate_toggle_enable_prob (method)">#mutate_toggle_enable_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#mutdiff_coefficient-instance_method" title="NEAT::Controller::NeatSettings#mutdiff_coefficient (method)">#mutdiff_coefficient</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span>
-    <small>NEAT::NeatOb</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/BasicNeuronTypes/BiasNeuron.html#neu_bias-instance_method" title="NEAT::BasicNeuronTypes::BiasNeuron#neu_bias (method)">#neu_bias</a></span>
-    <small>NEAT::BasicNeuronTypes::BiasNeuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#neucleate-instance_method" title="NEAT::Critter::Genotype#neucleate (method)">#neucleate</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#neural_gene_map-instance_method" title="NEAT::Critter::Genotype#neural_gene_map (method)">#neural_gene_map</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#neural_hidden-instance_method" title="NEAT::Controller#neural_hidden (method)">#neural_hidden</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#neural_inputs-instance_method" title="NEAT::Critter::Genotype#neural_inputs (method)">#neural_inputs</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#neural_inputs-instance_method" title="NEAT::Controller#neural_inputs (method)">#neural_inputs</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#neural_outputs-instance_method" title="NEAT::Critter::Genotype#neural_outputs (method)">#neural_outputs</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#neural_outputs-instance_method" title="NEAT::Controller#neural_outputs (method)">#neural_outputs</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#neuron_catalog-instance_method" title="NEAT::Controller#neuron_catalog (method)">#neuron_catalog</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#neuron_trait_mut_sig-instance_method" title="NEAT::Controller::NeatSettings#neuron_trait_mut_sig (method)">#neuron_trait_mut_sig</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#neuron_types-class_method" title="NEAT::Neuron.neuron_types (method)">neuron_types</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#neurons-instance_method" title="NEAT::Critter::Genotype#neurons (method)">#neurons</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT.html#new_innovation-class_method" title="NEAT.new_innovation (method)">new_innovation</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#new_innovation-instance_method" title="NEAT::Controller#new_innovation (method)">#new_innovation</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#newlink_tries-instance_method" title="NEAT::Controller::NeatSettings#newlink_tries (method)">#newlink_tries</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#novelty-instance_method" title="NEAT::Population#novelty (method)">#novelty</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#novelty-instance_method" title="NEAT::Critter#novelty (method)">#novelty</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver.html#npop-instance_method" title="NEAT::Evolver#npop (method)">#npop</a></span>
-    <small>NEAT::Evolver</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#nuke_redundancies%21-instance_method" title="NEAT::Critter::Genotype#nuke_redundancies! (method)">#nuke_redundancies!</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#out_neuron-instance_method" title="NEAT::Critter::Genotype::Gene#out_neuron (method)">#out_neuron</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#output-instance_method" title="NEAT::Neuron#output (method)">#output</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#output%3F-instance_method" title="NEAT::Neuron#output? (method)">#output?</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#output_neurons-instance_method" title="NEAT::Population#output_neurons (method)">#output_neurons</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#parms-instance_method" title="NEAT::Controller#parms (method)">#parms</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#phenotype-instance_method" title="NEAT::Critter#phenotype (method)">#phenotype</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#population-instance_method" title="NEAT::Controller#population (method)">#population</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#population-instance_method" title="NEAT::Critter#population (method)">#population</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#population_class-instance_method" title="NEAT::Controller#population_class (method)">#population_class</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#population_history-instance_method" title="NEAT::Controller#population_history (method)">#population_history</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#population_size-instance_method" title="NEAT::Controller::NeatSettings#population_size (method)">#population_size</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#print_every-instance_method" title="NEAT::Controller::NeatSettings#print_every (method)">#print_every</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#prune%21-instance_method" title="NEAT::Critter::Genotype#prune! (method)">#prune!</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#query-instance_method" title="NEAT::DSL#query (method)">#query</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#query_func-instance_method" title="NEAT::Controller#query_func (method)">#query_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT.html#random_name_generator-class_method" title="NEAT.random_name_generator (method)">random_name_generator</a></span>
-    <small>NEAT</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evaluator.html#ready_for_evaluation-instance_method" title="NEAT::Evaluator#ready_for_evaluation (method)">#ready_for_evaluation</a></span>
-    <small>NEAT::Evaluator</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter.html#ready_for_expression%21-instance_method" title="NEAT::Critter#ready_for_expression! (method)">#ready_for_expression!</a></span>
-    <small>NEAT::Critter</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#real_time_switch-instance_method" title="NEAT::Controller::NeatSettings#real_time_switch (method)">#real_time_switch</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#recur_only_prob-instance_method" title="NEAT::Controller::NeatSettings#recur_only_prob (method)">#recur_only_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#recur_prob-instance_method" title="NEAT::Controller::NeatSettings#recur_prob (method)">#recur_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#recurrence-instance_method" title="NEAT::DSL#recurrence (method)">#recurrence</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#recurrence_func-instance_method" title="NEAT::Controller#recurrence_func (method)">#recurrence_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#recurrency_switch-instance_method" title="NEAT::Controller::NeatSettings#recurrency_switch (method)">#recurrency_switch</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Evolver/CritterOp.html#reenable_gene%21-instance_method" title="NEAT::Evolver::CritterOp#reenable_gene! (method)">#reenable_gene!</a></span>
-    <small>NEAT::Evolver::CritterOp</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#report-instance_method" title="NEAT::Population#report (method)">#report</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/DSL.html#report-instance_method" title="NEAT::DSL#report (method)">#report</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller.html#report_hook-instance_method" title="NEAT::Controller#report_hook (method)">#report_hook</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Graph/DependencyResolver.html#resolve-instance_method" title="NEAT::Graph::DependencyResolver#resolve (method)">#resolve</a></span>
-    <small>NEAT::Graph::DependencyResolver</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Graph/DependencyResolver.html#resolve%21-instance_method" title="NEAT::Graph::DependencyResolver#resolve! (method)">#resolve!</a></span>
-    <small>NEAT::Graph::DependencyResolver</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#run-instance_method" title="NEAT::Controller#run (method)">#run</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#run_engine-instance_method" title="NEAT::DSL#run_engine (method)">#run_engine</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#seq_num-instance_method" title="NEAT::Controller#seq_num (method)">#seq_num</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#simple_fitness_error-instance_method" title="NEAT::DSL#simple_fitness_error (method)">#simple_fitness_error</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#smallest_species-instance_method" title="NEAT::Controller::NeatSettings#smallest_species (method)">#smallest_species</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#speciate%21-instance_method" title="NEAT::Population#speciate! (method)">#speciate!</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#species-instance_method" title="NEAT::Population#species (method)">#species</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#start_population_size-instance_method" title="NEAT::Controller::NeatSettings#start_population_size (method)">#start_population_size</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#start_sequence_at-instance_method" title="NEAT::Controller::NeatSettings#start_sequence_at (method)">#start_sequence_at</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Phenotype.html#stimulate-instance_method" title="NEAT::Critter::Phenotype#stimulate (method)">#stimulate</a></span>
-    <small>NEAT::Critter::Phenotype</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#stop_on_fit_func-instance_method" title="NEAT::Controller#stop_on_fit_func (method)">#stop_on_fit_func</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#stop_on_fitness-instance_method" title="NEAT::DSL#stop_on_fitness (method)">#stop_on_fitness</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#survival_mininum_per_species-instance_method" title="NEAT::Controller::NeatSettings#survival_mininum_per_species (method)">#survival_mininum_per_species</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#survival_threshold-instance_method" title="NEAT::Controller::NeatSettings#survival_threshold (method)">#survival_threshold</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span>
-    <small>NEAT::NeatOb</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#to_s-instance_method" title="NEAT::Critter::Genotype::Gene#to_s (method)">#to_s</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Phenotype.html#to_s-instance_method" title="NEAT::Critter::Phenotype#to_s (method)">#to_s</a></span>
-    <small>NEAT::Critter::Phenotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Neuron.html#trait-instance_method" title="NEAT::Neuron#trait (method)">#trait</a></span>
-    <small>NEAT::Neuron</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#trait_mutation_power-instance_method" title="NEAT::Controller::NeatSettings#trait_mutation_power (method)">#trait_mutation_power</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#trait_param_mut_prob-instance_method" title="NEAT::Controller::NeatSettings#trait_param_mut_prob (method)">#trait_param_mut_prob</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Population.html#traits-instance_method" title="NEAT::Population#traits (method)">#traits</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/DSL.html#uncondition_boolean_vector-instance_method" title="NEAT::DSL#uncondition_boolean_vector (method)">#uncondition_boolean_vector</a></span>
-    <small>NEAT::DSL</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Controller.html#verbosity-instance_method" title="NEAT::Controller#verbosity (method)">#verbosity</a></span>
-    <small>NEAT::Controller</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#weigh_mut_power-instance_method" title="NEAT::Controller::NeatSettings#weigh_mut_power (method)">#weigh_mut_power</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype/Gene.html#weight-instance_method" title="NEAT::Critter::Genotype::Gene#weight (method)">#weight</a></span>
-    <small>NEAT::Critter::Genotype::Gene</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Controller/NeatSettings.html#weight_coefficient-instance_method" title="NEAT::Controller::NeatSettings#weight_coefficient (method)">#weight_coefficient</a></span>
-    <small>NEAT::Controller::NeatSettings</small>
-  </li>
-  
-
-  <li class="r2 ">
-    <span class='object_link'><a href="NEAT/Critter/Genotype.html#wire%21-instance_method" title="NEAT::Critter::Genotype#wire! (method)">#wire!</a></span>
-    <small>NEAT::Critter::Genotype</small>
-  </li>
-  
-
-  <li class="r1 ">
-    <span class='object_link'><a href="NEAT/Population.html#worst_critter-instance_method" title="NEAT::Population#worst_critter (method)">#worst_critter</a></span>
-    <small>NEAT::Population</small>
-  </li>
-  
-
-      </ul>
-    </div>
-  </body>
-</html>