rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
- data/Gemfile.lock +39 -33
- data/README.md +66 -0
- data/Rakefile +19 -2
- data/bin/neat +4 -60
- data/lib/rubyneat/cli.rb +5 -0
- data/lib/rubyneat/cli/generate.rb +131 -0
- data/lib/rubyneat/cli/main.rb +54 -0
- data/lib/rubyneat/cli/templates/generate/Gemfile.tt +17 -0
- data/lib/rubyneat/cli/templates/generate/README.md.tt +1 -0
- data/lib/rubyneat/cli/templates/generate/bin/neat.tt +14 -0
- data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
- data/rubyneat.gemspec +73 -297
- data/rubyneat.gemspec.orig +384 -0
- metadata +76 -292
- data/.idea/.name +0 -1
- data/.idea/.rakeTasks +0 -7
- data/.idea/dictionaries/trader.xml +0 -3
- data/.idea/encodings.xml +0 -5
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- data/.idea/modules.xml +0 -9
- data/.idea/rubyneat.iml +0 -198
- data/.idea/runConfigurations/invpend_neat.xml +0 -26
- data/.idea/runConfigurations/sigdebug_neat.xml +0 -24
- data/.idea/runConfigurations/xor_neat.xml +0 -26
- data/.idea/runConfigurations/xordebug_neat.xml +0 -24
- data/.idea/runConfigurations/xorsin_neat.xml +0 -24
- data/.idea/scopes/scope_settings.xml +0 -5
- data/.idea/vcs.xml +0 -7
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- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Guardfile +0 -8
- data/doc/ControllerPoint.html +0 -125
- data/doc/CuteA.html +0 -286
- data/doc/CuteB.html +0 -297
- data/doc/DSL.html +0 -883
- data/doc/NEAT.html +0 -588
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- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -518
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -366
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -275
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -274
- data/doc/NEAT/Controller.html +0 -2490
- data/doc/NEAT/Controller/NeatSettings.html +0 -3985
- data/doc/NEAT/Critter.html +0 -1037
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- data/doc/NEAT/Critter/Genotype/Gene.html +0 -979
- data/doc/NEAT/Critter/Phenotype.html +0 -603
- data/doc/NEAT/DSL.html +0 -1255
- data/doc/NEAT/Evaluator.html +0 -420
- data/doc/NEAT/Evolver.html +0 -602
- data/doc/NEAT/Evolver/CritterOp.html +0 -551
- data/doc/NEAT/Expressor.html +0 -327
- data/doc/NEAT/Graph.html +0 -402
- data/doc/NEAT/Graph/DependencyResolver.html +0 -478
- data/doc/NEAT/Graph/GraphException.html +0 -123
- data/doc/NEAT/NeatException.html +0 -123
- data/doc/NEAT/NeatOb.html +0 -567
- data/doc/NEAT/Neuron.html +0 -1067
- data/doc/NEAT/Operator.html +0 -162
- data/doc/NEAT/Population.html +0 -1961
- data/doc/NEAT/Trait.html +0 -169
- data/doc/_index.html +0 -373
- data/doc/class_list.html +0 -54
- data/doc/css/common.css +0 -1
- data/doc/css/full_list.css +0 -57
- data/doc/css/style.css +0 -339
- data/doc/file_list.html +0 -53
- data/doc/frames.html +0 -26
- data/doc/index.html +0 -373
- data/doc/js/app.js +0 -219
- data/doc/js/full_list.js +0 -178
- data/doc/js/jquery.js +0 -4
- data/doc/method_list.html +0 -1415
- data/doc/top-level-namespace.html +0 -164
- data/foo/foo_aquarium_example.rb +0 -38
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- data/foo/foo_rubygoo.rb +0 -104
- data/foo/foo_sdl.rb +0 -34
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- data/neater/invpend_neat.rb +0 -150
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- data/neater/rnlib/xor.rb +0 -10
- data/neater/sigdebug_neat.rb +0 -136
- data/neater/xoranalog_neat.rb +0 -138
- data/neater/xorsin_neat.rb +0 -143
- data/projectFilesBackup/.idea/rubyneat.iml +0 -180
- data/public/.directory +0 -4
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- data/rdoc/ControllerPoint.html +0 -116
- data/rdoc/CuteA.html +0 -177
- data/rdoc/CuteB.html +0 -178
- data/rdoc/DSLSetup.html +0 -177
- data/rdoc/GameTestWindow.html +0 -242
- data/rdoc/GameWindow.html +0 -292
- data/rdoc/Gemfile.html +0 -215
- data/rdoc/Gemfile_lock.html +0 -327
- data/rdoc/GraphTest.html +0 -210
- data/rdoc/Guardfile.html +0 -198
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- data/rdoc/InvertedPendulum/InvPendWindow.html +0 -402
- data/rdoc/Logger.html +0 -98
- data/rdoc/NEAT.html +0 -422
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- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -265
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- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -162
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- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -161
- data/rdoc/NEAT/Controller.html +0 -729
- data/rdoc/NEAT/Controller/NeatSettings.html +0 -880
- data/rdoc/NEAT/Critter.html +0 -489
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- data/rdoc/NEAT/Critter/Phenotype.html +0 -330
- data/rdoc/NEAT/DSL.html +0 -729
- data/rdoc/NEAT/Evaluator.html +0 -256
- data/rdoc/NEAT/Evolver.html +0 -891
- data/rdoc/NEAT/Evolver/CritterOp.html +0 -349
- data/rdoc/NEAT/Expressor.html +0 -402
- data/rdoc/NEAT/Graph.html +0 -263
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- data/rdoc/NEAT/Neuron.html +0 -481
- data/rdoc/NEAT/Operator.html +0 -109
- data/rdoc/NEAT/Population.html +0 -935
- data/rdoc/NEAT/Trait.html +0 -117
- data/rdoc/Object.html +0 -384
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- data/rdoc/Rakefile.html +0 -254
- data/rdoc/RubyNEAT.html +0 -98
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- data/rdoc/SDL.html +0 -98
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- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +0 -413
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- data/rdoc/doc/NEAT/Expressor_html.html +0 -468
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +0 -598
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- data/rdoc/doc/NEAT/Graph_html.html +0 -527
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- data/rdoc/doc/NEAT/NeatOb_html.html +0 -671
- data/rdoc/doc/NEAT/Neuron_html.html +0 -1095
- data/rdoc/doc/NEAT/Operator_html.html +0 -337
- data/rdoc/doc/NEAT/Population_html.html +0 -1795
- data/rdoc/doc/NEAT/Trait_html.html +0 -344
- data/rdoc/doc/NEAT_html.html +0 -736
- data/rdoc/doc/_index_html.html +0 -559
- data/rdoc/doc/class_list_html.html +0 -369
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">define</span>(<span class="ruby-identifier">name</span> = <span class="ruby-constant">NEAT</span>.<span class="ruby-identifier">random_name_generator</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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[
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<span class="ruby-value">:hidden</span> <span class="ruby-comment"># we really don't care about mapping hidden neurons, but we'll ignore them later.</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 39</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">evolve</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-comment"># Query function is called with the sequence (time evolution) number,</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">query</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-comment"># fitness function calls the block with 2 vectors or two hashes, input and output</span>
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<span class="ruby-comment"># |vin, vout, seq|</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">fitness_func</span> = <span class="ruby-identifier">block</span>
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|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">cost_func</span> = <span class="ruby-identifier">block</span>
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|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">stop_on_fit_func</span> = <span class="ruby-identifier">block</span>
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">condition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
|
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<span class="ruby-identifier">vec</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">b</span> <span class="ruby-operator">?</span> <span class="ruby-value">1</span> <span class="ruby-operator">:</span> ((<span class="ruby-identifier">sig</span> <span class="ruby-operator">==</span> <span class="ruby-value">:sigmoid</span>) <span class="ruby-operator">?</span> <span class="ruby-value">0</span> <span class="ruby-operator">:</span> <span class="ruby-value">-1</span>)}
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<span class="ruby-comment"># Uncondition boolean vectors to be +1 if true, -1 if false</span>
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|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">uncondition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
|
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|
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<span class="ruby-identifier">vec</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">o</span><span class="ruby-operator">|</span> <span class="ruby-identifier">o</span> <span class="ruby-operator">></span> ((<span class="ruby-identifier">sig</span> <span class="ruby-operator">==</span> <span class="ruby-value">:sigmoid</span>) <span class="ruby-operator">?</span> <span class="ruby-value">0.5</span> <span class="ruby-operator">:</span> <span class="ruby-value">0</span>) <span class="ruby-operator">?</span> <span class="ruby-keyword">true</span> <span class="ruby-operator">:</span> <span class="ruby-keyword">false</span>}
|
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|
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|
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|
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|
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|
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<span class="ruby-comment"># Helper function to do a simple fitness calculation</span>
|
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<span class="ruby-comment"># on the basis of the sum of the square of the diffences</span>
|
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|
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<span class="ruby-comment"># of the element in the two vectors.</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">simple_fitness_error</span>(<span class="ruby-identifier">v1</span>, <span class="ruby-identifier">v2</span>)
|
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|
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<span class="ruby-identifier">sqrt</span> <span class="ruby-identifier">v1</span>.<span class="ruby-identifier">zip</span>(<span class="ruby-identifier">v2</span>).<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> (<span class="ruby-identifier">a</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">b</span>) <span class="ruby-operator">**</span> <span class="ruby-value">2.0</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">m</span>, <span class="ruby-identifier">c</span><span class="ruby-operator">|</span> <span class="ruby-identifier">m</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">c</span>}
|
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|
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<span class="ruby-keyword">end</span>
|
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|
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<span class="ruby-keyword">end</span></pre>
|
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|
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|
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|
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|
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|
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|
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|
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|
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<p>fitness function calls the block with 2 vectors or two hashes, input and
|
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output vectors of the critter being evaluated for fitness, as well as a
|
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sequence number that can be used to index what the actual output should be.
|
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|vin, vout, seq|</p>
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 56</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">fitness_func</span> = <span class="ruby-identifier">block</span>
|
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<span class="ruby-keyword">end</span></pre>
|
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|
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|
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|
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|
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<p>This is used to handle the details of our <a href="DSL.html">DSL</a>.</p>
|
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<div class="method-calls-super">
|
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|
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|
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<div class="method-source-code" id="method_missing-source">
|
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 114</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">method_missing</span>(<span class="ruby-identifier">m</span>, <span class="ruby-operator">*</span><span class="ruby-identifier">args</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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<span class="ruby-comment"># we want to catch parameters settings here.</span>
|
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|
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<span class="ruby-keyword">if</span> <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">respond_to?</span> (<span class="ruby-identifier">assignment</span> = (<span class="ruby-identifier">m</span>.<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">'='</span>).<span class="ruby-identifier">to_sym</span>)
|
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|
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<span class="ruby-identifier">raise</span> <span class="ruby-constant">NeatException</span>.<span class="ruby-identifier">new</span>(<span class="ruby-string">"Missing value(s) to %s"</span> <span class="ruby-operator">%</span> <span class="ruby-identifier">m</span>) <span class="ruby-keyword">if</span> <span class="ruby-identifier">args</span>.<span class="ruby-identifier">empty?</span>
|
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<span class="ruby-identifier">val</span> = (<span class="ruby-identifier">args</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-value">1</span>) <span class="ruby-operator">?</span> <span class="ruby-identifier">args</span>[<span class="ruby-value">0</span>] <span class="ruby-operator">:</span> <span class="ruby-identifier">args</span>
|
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<span class="ruby-identifier">$log</span>.<span class="ruby-identifier">debug</span> { <span class="ruby-string">"Caught method %s with parameter of %s"</span> <span class="ruby-operator">%</span> [<span class="ruby-identifier">assignment</span>, <span class="ruby-identifier">val</span>] }
|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">send</span>(<span class="ruby-identifier">assignment</span>, <span class="ruby-identifier">val</span>)
|
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<span class="ruby-keyword">else</span>
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<p>Query function is called with the sequence (time evolution) number, and
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nodes. In the case of hash, the keys in the hash shall correspond to the
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 44</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">query</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">query_func</span> = <span class="ruby-identifier">block</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 48</span>
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">recurrence_func</span> = <span class="ruby-identifier">block</span>
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-report" class="method-detail ">
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 103</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">report</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">report_hook</span> = <span class="ruby-identifier">block</span>
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<span class="method-name">run_engine</span><span
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<p>Run the engine. The block is called on each generation.</p>
|
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|
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|
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|
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|
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|
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|
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|
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|
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<p>Helper function to do a simple fitness calculation on the basis of the sum
|
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|
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of the square of the diffences of the element in the two vectors.</p>
|
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|
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|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 95</span>
|
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|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">simple_fitness_error</span>(<span class="ruby-identifier">v1</span>, <span class="ruby-identifier">v2</span>)
|
638
|
-
<span class="ruby-identifier">sqrt</span> <span class="ruby-identifier">v1</span>.<span class="ruby-identifier">zip</span>(<span class="ruby-identifier">v2</span>).<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> (<span class="ruby-identifier">a</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">b</span>) <span class="ruby-operator">**</span> <span class="ruby-value">2.0</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">m</span>, <span class="ruby-identifier">c</span><span class="ruby-operator">|</span> <span class="ruby-identifier">m</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">c</span>}
|
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|
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<span class="ruby-keyword">end</span></pre>
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|
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</div>
|
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|
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<div id="method-i-stop_on_fitness" class="method-detail ">
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|
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|
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<span class="method-name">stop_on_fitness</span><span
|
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|
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<p>Stop the progression once the fitness criteria is reached for the most fit
|
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critter</p>
|
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 75</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">stop_on_fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">stop_on_fit_func</span> = <span class="ruby-identifier">block</span>
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|
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<span class="method-name">uncondition_boolean_vector</span><span
|
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class="method-args">(vec, sig = :tanh)</span>
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|
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<p>Helper function to Uncondition boolean vectors to be +1 if true, -1 if
|
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false FIXME we need a better discrimination function</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 88</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">uncondition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
|
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<span class="ruby-identifier">vec</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">o</span><span class="ruby-operator">|</span> <span class="ruby-identifier">o</span> <span class="ruby-operator">></span> ((<span class="ruby-identifier">sig</span> <span class="ruby-operator">==</span> <span class="ruby-value">:sigmoid</span>) <span class="ruby-operator">?</span> <span class="ruby-value">0.5</span> <span class="ruby-operator">:</span> <span class="ruby-value">0</span>) <span class="ruby-operator">?</span> <span class="ruby-keyword">true</span> <span class="ruby-operator">:</span> <span class="ruby-keyword">false</span>}
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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