rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
- data/Gemfile.lock +39 -33
- data/README.md +66 -0
- data/Rakefile +19 -2
- data/bin/neat +4 -60
- data/lib/rubyneat/cli.rb +5 -0
- data/lib/rubyneat/cli/generate.rb +131 -0
- data/lib/rubyneat/cli/main.rb +54 -0
- data/lib/rubyneat/cli/templates/generate/Gemfile.tt +17 -0
- data/lib/rubyneat/cli/templates/generate/README.md.tt +1 -0
- data/lib/rubyneat/cli/templates/generate/bin/neat.tt +14 -0
- data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
- data/rubyneat.gemspec +73 -297
- data/rubyneat.gemspec.orig +384 -0
- metadata +76 -292
- data/.idea/.name +0 -1
- data/.idea/.rakeTasks +0 -7
- data/.idea/dictionaries/trader.xml +0 -3
- data/.idea/encodings.xml +0 -5
- data/.idea/misc.xml +0 -5
- data/.idea/modules.xml +0 -9
- data/.idea/rubyneat.iml +0 -198
- data/.idea/runConfigurations/invpend_neat.xml +0 -26
- data/.idea/runConfigurations/sigdebug_neat.xml +0 -24
- data/.idea/runConfigurations/xor_neat.xml +0 -26
- data/.idea/runConfigurations/xordebug_neat.xml +0 -24
- data/.idea/runConfigurations/xorsin_neat.xml +0 -24
- data/.idea/scopes/scope_settings.xml +0 -5
- data/.idea/vcs.xml +0 -7
- data/.idea/workspace.xml +0 -1151
- data/.yardoc/checksums +0 -11
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Guardfile +0 -8
- data/doc/ControllerPoint.html +0 -125
- data/doc/CuteA.html +0 -286
- data/doc/CuteB.html +0 -297
- data/doc/DSL.html +0 -883
- data/doc/NEAT.html +0 -588
- data/doc/NEAT/BasicNeuronTypes.html +0 -136
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -518
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -366
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -275
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -274
- data/doc/NEAT/Controller.html +0 -2490
- data/doc/NEAT/Controller/NeatSettings.html +0 -3985
- data/doc/NEAT/Critter.html +0 -1037
- data/doc/NEAT/Critter/Genotype.html +0 -1601
- data/doc/NEAT/Critter/Genotype/Gene.html +0 -979
- data/doc/NEAT/Critter/Phenotype.html +0 -603
- data/doc/NEAT/DSL.html +0 -1255
- data/doc/NEAT/Evaluator.html +0 -420
- data/doc/NEAT/Evolver.html +0 -602
- data/doc/NEAT/Evolver/CritterOp.html +0 -551
- data/doc/NEAT/Expressor.html +0 -327
- data/doc/NEAT/Graph.html +0 -402
- data/doc/NEAT/Graph/DependencyResolver.html +0 -478
- data/doc/NEAT/Graph/GraphException.html +0 -123
- data/doc/NEAT/NeatException.html +0 -123
- data/doc/NEAT/NeatOb.html +0 -567
- data/doc/NEAT/Neuron.html +0 -1067
- data/doc/NEAT/Operator.html +0 -162
- data/doc/NEAT/Population.html +0 -1961
- data/doc/NEAT/Trait.html +0 -169
- data/doc/_index.html +0 -373
- data/doc/class_list.html +0 -54
- data/doc/css/common.css +0 -1
- data/doc/css/full_list.css +0 -57
- data/doc/css/style.css +0 -339
- data/doc/file_list.html +0 -53
- data/doc/frames.html +0 -26
- data/doc/index.html +0 -373
- data/doc/js/app.js +0 -219
- data/doc/js/full_list.js +0 -178
- data/doc/js/jquery.js +0 -4
- data/doc/method_list.html +0 -1415
- data/doc/top-level-namespace.html +0 -164
- data/foo/foo_aquarium_example.rb +0 -38
- data/foo/foo_gosu.rb +0 -99
- data/foo/foo_rubygoo.rb +0 -104
- data/foo/foo_sdl.rb +0 -34
- data/foo/icon.png +0 -0
- data/neater/invpend_neat.rb +0 -150
- data/neater/rnlib/inverted_pendulum.rb +0 -380
- data/neater/rnlib/xor.rb +0 -10
- data/neater/sigdebug_neat.rb +0 -136
- data/neater/xoranalog_neat.rb +0 -138
- data/neater/xorsin_neat.rb +0 -143
- data/projectFilesBackup/.idea/rubyneat.iml +0 -180
- data/public/.directory +0 -4
- data/public/background.png +0 -0
- data/public/background.xcf +0 -0
- data/public/cart.png +0 -0
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- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +0 -116
- data/rdoc/CuteA.html +0 -177
- data/rdoc/CuteB.html +0 -178
- data/rdoc/DSLSetup.html +0 -177
- data/rdoc/GameTestWindow.html +0 -242
- data/rdoc/GameWindow.html +0 -292
- data/rdoc/Gemfile.html +0 -215
- data/rdoc/Gemfile_lock.html +0 -327
- data/rdoc/GraphTest.html +0 -210
- data/rdoc/Guardfile.html +0 -198
- data/rdoc/InvertedPendulum.html +0 -198
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- data/rdoc/InvertedPendulum/DSL.html +0 -259
- data/rdoc/InvertedPendulum/InvPendWindow.html +0 -402
- data/rdoc/Logger.html +0 -98
- data/rdoc/NEAT.html +0 -422
- data/rdoc/NEAT/BasicNeuronTypes.html +0 -107
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -265
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -206
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -161
- data/rdoc/NEAT/Controller.html +0 -729
- data/rdoc/NEAT/Controller/NeatSettings.html +0 -880
- data/rdoc/NEAT/Critter.html +0 -489
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- data/rdoc/NEAT/Critter/Genotype/Gene.html +0 -457
- data/rdoc/NEAT/Critter/Phenotype.html +0 -330
- data/rdoc/NEAT/DSL.html +0 -729
- data/rdoc/NEAT/Evaluator.html +0 -256
- data/rdoc/NEAT/Evolver.html +0 -891
- data/rdoc/NEAT/Evolver/CritterOp.html +0 -349
- data/rdoc/NEAT/Expressor.html +0 -402
- data/rdoc/NEAT/Graph.html +0 -263
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- data/rdoc/NEAT/NeatException.html +0 -105
- data/rdoc/NEAT/NeatOb.html +0 -325
- data/rdoc/NEAT/Neuron.html +0 -481
- data/rdoc/NEAT/Operator.html +0 -109
- data/rdoc/NEAT/Population.html +0 -935
- data/rdoc/NEAT/Trait.html +0 -117
- data/rdoc/Object.html +0 -384
- data/rdoc/Phi.html +0 -98
- data/rdoc/Player.html +0 -383
- data/rdoc/Rakefile.html +0 -254
- data/rdoc/RubyNEAT.html +0 -98
- data/rdoc/RubyNEAT/Application.html +0 -105
- data/rdoc/SDL.html +0 -98
- data/rdoc/SDL/Event2.html +0 -98
- data/rdoc/Vector.html +0 -195
- data/rdoc/created.rid +0 -125
- data/rdoc/doc/ControllerPoint_html.html +0 -299
- data/rdoc/doc/CuteA_html.html +0 -438
- data/rdoc/doc/CuteB_html.html +0 -436
- data/rdoc/doc/DSL_html.html +0 -992
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +0 -617
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +0 -498
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +0 -412
- data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +0 -310
- data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +0 -3324
- data/rdoc/doc/NEAT/Controller_html.html +0 -2212
- data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +0 -997
- data/rdoc/doc/NEAT/Critter/Genotype_html.html +0 -1556
- data/rdoc/doc/NEAT/Critter/Phenotype_html.html +0 -687
- data/rdoc/doc/NEAT/Critter_html.html +0 -1037
- data/rdoc/doc/NEAT/DSL_html.html +0 -1349
- data/rdoc/doc/NEAT/Evaluator_html.html +0 -556
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +0 -690
- data/rdoc/doc/NEAT/Evolver_html.html +0 -677
- data/rdoc/doc/NEAT/Expressor_html.html +0 -468
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +0 -598
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +0 -299
- data/rdoc/doc/NEAT/Graph_html.html +0 -527
- data/rdoc/doc/NEAT/NeatException_html.html +0 -299
- data/rdoc/doc/NEAT/NeatOb_html.html +0 -671
- data/rdoc/doc/NEAT/Neuron_html.html +0 -1095
- data/rdoc/doc/NEAT/Operator_html.html +0 -337
- data/rdoc/doc/NEAT/Population_html.html +0 -1795
- data/rdoc/doc/NEAT/Trait_html.html +0 -344
- data/rdoc/doc/NEAT_html.html +0 -736
- data/rdoc/doc/_index_html.html +0 -559
- data/rdoc/doc/class_list_html.html +0 -369
- data/rdoc/doc/css/common_css.html +0 -188
- data/rdoc/doc/css/full_list_css.html +0 -243
- data/rdoc/doc/css/style_css.html +0 -530
- data/rdoc/doc/file_list_html.html +0 -240
- data/rdoc/doc/frames_html.html +0 -217
- data/rdoc/doc/index_html.html +0 -559
- data/rdoc/doc/js/app_js.html +0 -423
- data/rdoc/doc/js/full_list_js.html +0 -372
- data/rdoc/doc/js/jquery_js.html +0 -1536
- data/rdoc/doc/method_list_html.html +0 -1375
- data/rdoc/doc/top-level-namespace_html.html +0 -317
- data/rdoc/fonts.css +0 -167
- data/rdoc/fonts/Lato-Light.ttf +0 -0
- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
- data/rdoc/images/add.png +0 -0
- data/rdoc/images/arrow_up.png +0 -0
- data/rdoc/images/brick.png +0 -0
- data/rdoc/images/brick_link.png +0 -0
- data/rdoc/images/bug.png +0 -0
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- data/rdoc/images/zoom.png +0 -0
- data/rdoc/index.html +0 -282
- data/rdoc/js/darkfish.js +0 -140
- data/rdoc/js/jquery.js +0 -18
- data/rdoc/js/navigation.js +0 -142
- data/rdoc/js/search.js +0 -109
- data/rdoc/js/search_index.js +0 -1
- data/rdoc/js/searcher.js +0 -228
- data/rdoc/rdoc.css +0 -580
- data/rdoc/rubyneat_gemspec.html +0 -387
- data/rdoc/table_of_contents.html +0 -2502
- data/rdoc/xordebug_log.html +0 -170598
- data/rdoc/xorsin_log.html +0 -22569
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<p>fitness function calls the block with 2 vectors or two hashes, input and
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output vectors of the critter being evaluated for fitness, as well as a
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sequence number that can be used to index what the actual output should be.</p>
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<a href="#query-instance_method" title="#query (instance method)">- (Object) <strong>query</strong>(&block) </a>
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<a href="#report-instance_method" title="#report (instance method)">- (Object) <strong>report</strong>(&block) </a>
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<p>Report on evaluations.</p>
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<a href="#run_engine-instance_method" title="#run_engine (instance method)">- (Object) <strong>run_engine</strong>(&block) </a>
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<p>Run the engine.</p>
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<a href="#simple_fitness_error-instance_method" title="#simple_fitness_error (instance method)">- (Object) <strong>simple_fitness_error</strong>(v1, v2) </a>
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<span class="summary_desc"><div class='inline'>
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<p>Helper function to do a simple fitness calculation on the basis of the sum
|
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|
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of the square of the diffences of the element in the two vectors.</p>
|
|
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<a href="#stop_on_fitness-instance_method" title="#stop_on_fitness (instance method)">- (Object) <strong>stop_on_fitness</strong>(&block) </a>
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<span class="summary_desc"><div class='inline'>
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<p>Stop the progression once the fitness criteria is reached for the most fit
|
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critter.</p>
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<span class="summary_signature">
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<a href="#uncondition_boolean_vector-instance_method" title="#uncondition_boolean_vector (instance method)">- (Object) <strong>uncondition_boolean_vector</strong>(vec, sig = :tanh) </a>
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<span class="summary_desc"><div class='inline'>
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|
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<p>Helper function to Uncondition boolean vectors to be +1 if true, -1 if
|
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|
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false FIXME we need a better discrimination function.</p>
|
|
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|
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</div></span>
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<h3 class="inherited">Methods included from <span class='object_link'><a href="../NEAT.html" title="NEAT (module)">NEAT</a></span></h3>
|
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|
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<p class="inherited"><span class='object_link'><a href="../NEAT.html#controller-class_method" title="NEAT.controller (method)">controller</a></span>, <span class='object_link'><a href="../NEAT.html#controller%3D-class_method" title="NEAT.controller= (method)">controller=</a></span>, <span class='object_link'><a href="../NEAT.html#create_controller-class_method" title="NEAT.create_controller (method)">create_controller</a></span>, <span class='object_link'><a href="../NEAT.html#dpp-class_method" title="NEAT.dpp (method)">dpp</a></span>, <span class='object_link'><a href="../NEAT.html#gaussian-class_method" title="NEAT.gaussian (method)">gaussian</a></span>, <span class='object_link'><a href="../NEAT.html#new_innovation-class_method" title="NEAT.new_innovation (method)">new_innovation</a></span>, <span class='object_link'><a href="../NEAT.html#random_name_generator-class_method" title="NEAT.random_name_generator (method)">random_name_generator</a></span></p>
|
|
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|
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<div id="method_missing_details" class="method_details_list">
|
|
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|
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<h2>Dynamic Method Handling</h2>
|
|
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|
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<p class="notice this">
|
|
483
|
-
This class handles dynamic methods through the <tt>method_missing</tt> method
|
|
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|
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|
|
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|
-
</p>
|
|
486
|
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|
|
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|
-
<div class="method_details first">
|
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|
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<h3 class="signature first" id="method_missing-instance_method">
|
|
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|
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|
|
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|
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- (<tt>Object</tt>) <strong>method_missing</strong>(m, *args, &block)
|
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</h3><div class="docstring">
|
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|
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<div class="discussion">
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|
498
|
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|
|
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|
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<p>This is used to handle the details of our DSL.</p>
|
|
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|
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|
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|
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|
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|
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</div>
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<div class="tags">
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</div><table class="source_code">
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<tr>
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<td>
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<pre class="lines">
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124</pre>
|
|
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|
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</td>
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|
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|
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<td>
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|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 114</span>
|
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<span class='kw'>def</span> <span class='id identifier rubyid_method_missing'>method_missing</span><span class='lparen'>(</span><span class='id identifier rubyid_m'>m</span><span class='comma'>,</span> <span class='op'>*</span><span class='id identifier rubyid_args'>args</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
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|
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|
-
<span class='comment'># we want to catch parameters settings here.
|
|
530
|
-
</span> <span class='kw'>if</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_respond_to?'>respond_to?</span> <span class='lparen'>(</span><span class='id identifier rubyid_assignment'>assignment</span> <span class='op'>=</span> <span class='lparen'>(</span><span class='id identifier rubyid_m'>m</span><span class='period'>.</span><span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>=</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_to_sym'>to_sym</span><span class='rparen'>)</span>
|
|
531
|
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<span class='id identifier rubyid_raise'>raise</span> <span class='const'>NeatException</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Missing value(s) to %s</span><span class='tstring_end'>"</span></span> <span class='op'>%</span> <span class='id identifier rubyid_m'>m</span><span class='rparen'>)</span> <span class='kw'>if</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_empty?'>empty?</span>
|
|
532
|
-
<span class='id identifier rubyid_val'>val</span> <span class='op'>=</span> <span class='lparen'>(</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span> <span class='op'>==</span> <span class='int'>1</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='id identifier rubyid_args'>args</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span> <span class='op'>:</span> <span class='id identifier rubyid_args'>args</span>
|
|
533
|
-
<span class='gvar'>$log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='lbrace'>{</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Caught method %s with parameter of %s</span><span class='tstring_end'>"</span></span> <span class='op'>%</span> <span class='lbracket'>[</span><span class='id identifier rubyid_assignment'>assignment</span><span class='comma'>,</span> <span class='id identifier rubyid_val'>val</span><span class='rbracket'>]</span> <span class='rbrace'>}</span>
|
|
534
|
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<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_send'>send</span><span class='lparen'>(</span><span class='id identifier rubyid_assignment'>assignment</span><span class='comma'>,</span> <span class='id identifier rubyid_val'>val</span><span class='rparen'>)</span>
|
|
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|
-
<span class='kw'>else</span>
|
|
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|
-
<span class='kw'>super</span>
|
|
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|
-
<span class='kw'>end</span>
|
|
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|
-
<span class='kw'>end</span></pre>
|
|
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|
-
</td>
|
|
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|
-
</tr>
|
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|
-
</table>
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</div>
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|
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|
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544
|
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</div>
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|
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546
|
-
|
|
547
|
-
<div id="instance_method_details" class="method_details_list">
|
|
548
|
-
<h2>Instance Method Details</h2>
|
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|
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|
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550
|
-
|
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|
-
<div class="method_details first">
|
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|
-
<h3 class="signature first" id="compare-instance_method">
|
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553
|
-
|
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554
|
-
- (<tt>Object</tt>) <strong>compare</strong>(&block)
|
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|
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|
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|
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|
|
557
|
-
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558
|
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|
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|
-
</h3><div class="docstring">
|
|
561
|
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<div class="discussion">
|
|
562
|
-
|
|
563
|
-
<p>Fitness ordering – given 2 fitness numbers, use the <=> to compare
|
|
564
|
-
them (or the equivalent, following the +1, 0, -1 that is in the sense of
|
|
565
|
-
<=>)</p>
|
|
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|
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|
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|
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</div>
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|
569
|
-
</div>
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|
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<div class="tags">
|
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|
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|
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|
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|
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</div><table class="source_code">
|
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|
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|
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|
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<td>
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|
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<pre class="lines">
|
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|
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|
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|
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|
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64
|
|
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|
-
65</pre>
|
|
582
|
-
</td>
|
|
583
|
-
<td>
|
|
584
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 63</span>
|
|
585
|
-
|
|
586
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
587
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
588
|
-
<span class='kw'>end</span></pre>
|
|
589
|
-
</td>
|
|
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|
-
</tr>
|
|
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|
-
</table>
|
|
592
|
-
</div>
|
|
593
|
-
|
|
594
|
-
<div class="method_details ">
|
|
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|
-
<h3 class="signature " id="condition_boolean_vector-instance_method">
|
|
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|
-
|
|
597
|
-
- (<tt>Object</tt>) <strong>condition_boolean_vector</strong>(vec, sig = :tanh)
|
|
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|
-
|
|
599
|
-
|
|
600
|
-
|
|
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|
-
|
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|
-
|
|
603
|
-
</h3><div class="docstring">
|
|
604
|
-
<div class="discussion">
|
|
605
|
-
|
|
606
|
-
<p>Helper function to Condition boolean vectors to be +1 if true, -1 if false
|
|
607
|
-
(0 if sigmoid)</p>
|
|
608
|
-
|
|
609
|
-
|
|
610
|
-
</div>
|
|
611
|
-
</div>
|
|
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|
-
<div class="tags">
|
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|
-
|
|
614
|
-
|
|
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|
-
</div><table class="source_code">
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|
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|
-
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|
|
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|
-
<td>
|
|
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|
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<pre class="lines">
|
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|
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|
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|
-
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|
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|
-
81
|
|
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|
-
82
|
|
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|
-
83</pre>
|
|
624
|
-
</td>
|
|
625
|
-
<td>
|
|
626
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 81</span>
|
|
627
|
-
|
|
628
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_condition_boolean_vector'>condition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
629
|
-
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_b'>b</span> <span class='op'>?</span> <span class='int'>1</span> <span class='op'>:</span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='int'>0</span> <span class='op'>:</span> <span class='op'>-</span><span class='int'>1</span><span class='rparen'>)</span><span class='rbrace'>}</span>
|
|
630
|
-
<span class='kw'>end</span></pre>
|
|
631
|
-
</td>
|
|
632
|
-
</tr>
|
|
633
|
-
</table>
|
|
634
|
-
</div>
|
|
635
|
-
|
|
636
|
-
<div class="method_details ">
|
|
637
|
-
<h3 class="signature " id="cost-instance_method">
|
|
638
|
-
|
|
639
|
-
- (<tt>Object</tt>) <strong>cost</strong>(&block)
|
|
640
|
-
|
|
641
|
-
|
|
642
|
-
|
|
643
|
-
|
|
644
|
-
|
|
645
|
-
</h3><div class="docstring">
|
|
646
|
-
<div class="discussion">
|
|
647
|
-
|
|
648
|
-
<p>Calculation to add the cost to the fitness, resulting in a fitness that
|
|
649
|
-
incorporates the cost for sorting purposes.</p>
|
|
650
|
-
|
|
651
|
-
|
|
652
|
-
</div>
|
|
653
|
-
</div>
|
|
654
|
-
<div class="tags">
|
|
655
|
-
|
|
656
|
-
|
|
657
|
-
</div><table class="source_code">
|
|
658
|
-
<tr>
|
|
659
|
-
<td>
|
|
660
|
-
<pre class="lines">
|
|
661
|
-
|
|
662
|
-
|
|
663
|
-
69
|
|
664
|
-
70
|
|
665
|
-
71</pre>
|
|
666
|
-
</td>
|
|
667
|
-
<td>
|
|
668
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 69</span>
|
|
669
|
-
|
|
670
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_cost'>cost</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
671
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_cost_func'>cost_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
672
|
-
<span class='kw'>end</span></pre>
|
|
673
|
-
</td>
|
|
674
|
-
</tr>
|
|
675
|
-
</table>
|
|
676
|
-
</div>
|
|
677
|
-
|
|
678
|
-
<div class="method_details ">
|
|
679
|
-
<h3 class="signature " id="define-instance_method">
|
|
680
|
-
|
|
681
|
-
- (<tt>Object</tt>) <strong>define</strong>(name = NEAT.random_name_generator, &block)
|
|
682
|
-
|
|
683
|
-
|
|
684
|
-
|
|
685
|
-
|
|
686
|
-
|
|
687
|
-
</h3><div class="docstring">
|
|
688
|
-
<div class="discussion">
|
|
689
|
-
|
|
690
|
-
<p>DSL – Define defines the parameters to the controller.</p>
|
|
691
|
-
|
|
692
|
-
|
|
693
|
-
</div>
|
|
694
|
-
</div>
|
|
695
|
-
<div class="tags">
|
|
696
|
-
|
|
697
|
-
|
|
698
|
-
</div><table class="source_code">
|
|
699
|
-
<tr>
|
|
700
|
-
<td>
|
|
701
|
-
<pre class="lines">
|
|
702
|
-
|
|
703
|
-
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|
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|
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15
|
|
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|
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16
|
|
706
|
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17
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|
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18
|
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|
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|
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|
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|
|
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|
-
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|
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|
-
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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35
|
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725
|
-
36</pre>
|
|
726
|
-
</td>
|
|
727
|
-
<td>
|
|
728
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 15</span>
|
|
729
|
-
|
|
730
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_define'>define</span><span class='lparen'>(</span><span class='id identifier rubyid_name'>name</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='period'>.</span><span class='id identifier rubyid_random_name_generator'>random_name_generator</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
731
|
-
<span class='lbracket'>[</span>
|
|
732
|
-
<span class='symbol'>:inputs</span><span class='comma'>,</span>
|
|
733
|
-
<span class='symbol'>:outputs</span><span class='comma'>,</span>
|
|
734
|
-
<span class='symbol'>:hidden</span> <span class='comment'># we really don't care about mapping hidden neurons, but we'll ignore them later.
|
|
735
|
-
</span> <span class='rbracket'>]</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_iometh'>iometh</span><span class='op'>|</span>
|
|
736
|
-
<span class='id identifier rubyid_instance_eval'>instance_eval</span> <span class='tstring'><span class='tstring_beg'>%Q[</span><span class='tstring_content'>
|
|
737
|
-
def </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_iometh'>iometh</span><span class='embexpr_end'>}</span><span class='tstring_content'>(nodes = nil, &block)
|
|
738
|
-
neui = unless nodes.nil?
|
|
739
|
-
nodes
|
|
740
|
-
else
|
|
741
|
-
block.()
|
|
742
|
-
end
|
|
743
|
-
NEAT::controller.neural_</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_iometh'>iometh</span><span class='embexpr_end'>}</span><span class='tstring_content'> = if neui.kind_of? Hash
|
|
744
|
-
neui
|
|
745
|
-
else
|
|
746
|
-
Hash[neui.map{|n| [NEAT::random_name_generator, n]}]
|
|
747
|
-
end
|
|
748
|
-
end</span><span class='tstring_end'>]</span></span>
|
|
749
|
-
<span class='kw'>end</span>
|
|
750
|
-
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span>
|
|
751
|
-
<span class='kw'>end</span></pre>
|
|
752
|
-
</td>
|
|
753
|
-
</tr>
|
|
754
|
-
</table>
|
|
755
|
-
</div>
|
|
756
|
-
|
|
757
|
-
<div class="method_details ">
|
|
758
|
-
<h3 class="signature " id="evolve-instance_method">
|
|
759
|
-
|
|
760
|
-
- (<tt>Object</tt>) <strong>evolve</strong>(&block)
|
|
761
|
-
|
|
762
|
-
|
|
763
|
-
|
|
764
|
-
|
|
765
|
-
|
|
766
|
-
</h3><div class="docstring">
|
|
767
|
-
<div class="discussion">
|
|
768
|
-
|
|
769
|
-
<p>DSL – Run evolution</p>
|
|
770
|
-
|
|
771
|
-
|
|
772
|
-
</div>
|
|
773
|
-
</div>
|
|
774
|
-
<div class="tags">
|
|
775
|
-
|
|
776
|
-
|
|
777
|
-
</div><table class="source_code">
|
|
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|
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<tr>
|
|
779
|
-
<td>
|
|
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|
-
<pre class="lines">
|
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|
-
76
|
|
821
|
-
77
|
|
822
|
-
78
|
|
823
|
-
79
|
|
824
|
-
80
|
|
825
|
-
81
|
|
826
|
-
82
|
|
827
|
-
83
|
|
828
|
-
84
|
|
829
|
-
85
|
|
830
|
-
86
|
|
831
|
-
87
|
|
832
|
-
88
|
|
833
|
-
89
|
|
834
|
-
90
|
|
835
|
-
91
|
|
836
|
-
92
|
|
837
|
-
93
|
|
838
|
-
94
|
|
839
|
-
95
|
|
840
|
-
96
|
|
841
|
-
97
|
|
842
|
-
98
|
|
843
|
-
99
|
|
844
|
-
100</pre>
|
|
845
|
-
</td>
|
|
846
|
-
<td>
|
|
847
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 39</span>
|
|
848
|
-
|
|
849
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_evolve'>evolve</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
850
|
-
<span class='comment'># Query function is called with the sequence (time evolution) number,
|
|
851
|
-
</span> <span class='comment'># and returns an array or hash of parameters that will be given
|
|
852
|
-
</span> <span class='comment'># to the input nodes. In the case of hash, the keys in the hash
|
|
853
|
-
</span> <span class='comment'># shall correspond to the names given to the input neurons.
|
|
854
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_query'>query</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
855
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_query_func'>query_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
856
|
-
<span class='kw'>end</span>
|
|
857
|
-
|
|
858
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_recurrence'>recurrence</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
859
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_recurrence_func'>recurrence_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
860
|
-
<span class='kw'>end</span>
|
|
861
|
-
|
|
862
|
-
<span class='comment'># fitness function calls the block with 2 vectors or two hashes, input and output
|
|
863
|
-
</span> <span class='comment'># vectors of the critter being evaluated for fitness, as well as a sequence
|
|
864
|
-
</span> <span class='comment'># number that can be used to index what the actual output should be.
|
|
865
|
-
</span> <span class='comment'># |vin, vout, seq|
|
|
866
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
867
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_fitness_func'>fitness_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
868
|
-
<span class='kw'>end</span>
|
|
869
|
-
|
|
870
|
-
<span class='comment'># Fitness ordering -- given 2 fitness numbers,
|
|
871
|
-
</span> <span class='comment'># use the <=> to compare them (or the equivalent, following
|
|
872
|
-
</span> <span class='comment'># the +1, 0, -1 that is in the sense of <=>)
|
|
873
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
874
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
875
|
-
<span class='kw'>end</span>
|
|
876
|
-
|
|
877
|
-
<span class='comment'># Calculation to add the cost to the fitness, resulting in a fitness
|
|
878
|
-
</span> <span class='comment'># that incorporates the cost for sorting purposes.
|
|
879
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_cost'>cost</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
880
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_cost_func'>cost_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
881
|
-
<span class='kw'>end</span>
|
|
882
|
-
|
|
883
|
-
<span class='comment'># Stop the progression once the fitness criteria is reached
|
|
884
|
-
</span> <span class='comment'># for the most fit critter
|
|
885
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_stop_on_fitness'>stop_on_fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
886
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_stop_on_fit_func'>stop_on_fit_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
887
|
-
<span class='kw'>end</span>
|
|
888
|
-
|
|
889
|
-
<span class='comment'># Helper function to
|
|
890
|
-
</span> <span class='comment'># Condition boolean vectors to be +1 if true, -1 if false (0 if sigmoid)
|
|
891
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_condition_boolean_vector'>condition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
892
|
-
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_b'>b</span> <span class='op'>?</span> <span class='int'>1</span> <span class='op'>:</span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='int'>0</span> <span class='op'>:</span> <span class='op'>-</span><span class='int'>1</span><span class='rparen'>)</span><span class='rbrace'>}</span>
|
|
893
|
-
<span class='kw'>end</span>
|
|
894
|
-
|
|
895
|
-
<span class='comment'># Helper function to
|
|
896
|
-
</span> <span class='comment'># Uncondition boolean vectors to be +1 if true, -1 if false
|
|
897
|
-
</span> <span class='comment'># FIXME we need a better discrimination function
|
|
898
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_uncondition_boolean_vector'>uncondition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
899
|
-
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_o'>o</span><span class='op'>|</span> <span class='id identifier rubyid_o'>o</span> <span class='op'>></span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='float'>0.5</span> <span class='op'>:</span> <span class='int'>0</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='kw'>true</span> <span class='op'>:</span> <span class='kw'>false</span><span class='rbrace'>}</span>
|
|
900
|
-
<span class='kw'>end</span>
|
|
901
|
-
|
|
902
|
-
<span class='comment'># Helper function to do a simple fitness calculation
|
|
903
|
-
</span> <span class='comment'># on the basis of the sum of the square of the diffences
|
|
904
|
-
</span> <span class='comment'># of the element in the two vectors.
|
|
905
|
-
</span> <span class='kw'>def</span> <span class='id identifier rubyid_simple_fitness_error'>simple_fitness_error</span><span class='lparen'>(</span><span class='id identifier rubyid_v1'>v1</span><span class='comma'>,</span> <span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span>
|
|
906
|
-
<span class='id identifier rubyid_sqrt'>sqrt</span> <span class='id identifier rubyid_v1'>v1</span><span class='period'>.</span><span class='id identifier rubyid_zip'>zip</span><span class='lparen'>(</span><span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='lparen'>(</span><span class='id identifier rubyid_a'>a</span> <span class='op'>-</span> <span class='id identifier rubyid_b'>b</span><span class='rparen'>)</span> <span class='op'>**</span> <span class='float'>2.0</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_m'>m</span><span class='comma'>,</span> <span class='id identifier rubyid_c'>c</span><span class='op'>|</span> <span class='id identifier rubyid_m'>m</span> <span class='op'>+</span> <span class='id identifier rubyid_c'>c</span><span class='rbrace'>}</span>
|
|
907
|
-
<span class='kw'>end</span>
|
|
908
|
-
|
|
909
|
-
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span>
|
|
910
|
-
<span class='kw'>end</span></pre>
|
|
911
|
-
</td>
|
|
912
|
-
</tr>
|
|
913
|
-
</table>
|
|
914
|
-
</div>
|
|
915
|
-
|
|
916
|
-
<div class="method_details ">
|
|
917
|
-
<h3 class="signature " id="fitness-instance_method">
|
|
918
|
-
|
|
919
|
-
- (<tt>Object</tt>) <strong>fitness</strong>(&block)
|
|
920
|
-
|
|
921
|
-
|
|
922
|
-
|
|
923
|
-
|
|
924
|
-
|
|
925
|
-
</h3><div class="docstring">
|
|
926
|
-
<div class="discussion">
|
|
927
|
-
|
|
928
|
-
<p>fitness function calls the block with 2 vectors or two hashes, input and
|
|
929
|
-
output vectors of the critter being evaluated for fitness, as well as a
|
|
930
|
-
sequence number that can be used to index what the actual output should be.
|
|
931
|
-
|vin, vout, seq|</p>
|
|
932
|
-
|
|
933
|
-
|
|
934
|
-
</div>
|
|
935
|
-
</div>
|
|
936
|
-
<div class="tags">
|
|
937
|
-
|
|
938
|
-
|
|
939
|
-
</div><table class="source_code">
|
|
940
|
-
<tr>
|
|
941
|
-
<td>
|
|
942
|
-
<pre class="lines">
|
|
943
|
-
|
|
944
|
-
|
|
945
|
-
56
|
|
946
|
-
57
|
|
947
|
-
58</pre>
|
|
948
|
-
</td>
|
|
949
|
-
<td>
|
|
950
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 56</span>
|
|
951
|
-
|
|
952
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
953
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_fitness_func'>fitness_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
954
|
-
<span class='kw'>end</span></pre>
|
|
955
|
-
</td>
|
|
956
|
-
</tr>
|
|
957
|
-
</table>
|
|
958
|
-
</div>
|
|
959
|
-
|
|
960
|
-
<div class="method_details ">
|
|
961
|
-
<h3 class="signature " id="query-instance_method">
|
|
962
|
-
|
|
963
|
-
- (<tt>Object</tt>) <strong>query</strong>(&block)
|
|
964
|
-
|
|
965
|
-
|
|
966
|
-
|
|
967
|
-
|
|
968
|
-
|
|
969
|
-
</h3><div class="docstring">
|
|
970
|
-
<div class="discussion">
|
|
971
|
-
|
|
972
|
-
<p>Query function is called with the sequence (time evolution) number, and
|
|
973
|
-
returns an array or hash of parameters that will be given to the input
|
|
974
|
-
nodes. In the case of hash, the keys in the hash shall correspond to the
|
|
975
|
-
names given to the input neurons.</p>
|
|
976
|
-
|
|
977
|
-
|
|
978
|
-
</div>
|
|
979
|
-
</div>
|
|
980
|
-
<div class="tags">
|
|
981
|
-
|
|
982
|
-
|
|
983
|
-
</div><table class="source_code">
|
|
984
|
-
<tr>
|
|
985
|
-
<td>
|
|
986
|
-
<pre class="lines">
|
|
987
|
-
|
|
988
|
-
|
|
989
|
-
44
|
|
990
|
-
45
|
|
991
|
-
46</pre>
|
|
992
|
-
</td>
|
|
993
|
-
<td>
|
|
994
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 44</span>
|
|
995
|
-
|
|
996
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_query'>query</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
997
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_query_func'>query_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
998
|
-
<span class='kw'>end</span></pre>
|
|
999
|
-
</td>
|
|
1000
|
-
</tr>
|
|
1001
|
-
</table>
|
|
1002
|
-
</div>
|
|
1003
|
-
|
|
1004
|
-
<div class="method_details ">
|
|
1005
|
-
<h3 class="signature " id="recurrence-instance_method">
|
|
1006
|
-
|
|
1007
|
-
- (<tt>Object</tt>) <strong>recurrence</strong>(&block)
|
|
1008
|
-
|
|
1009
|
-
|
|
1010
|
-
|
|
1011
|
-
|
|
1012
|
-
|
|
1013
|
-
</h3><table class="source_code">
|
|
1014
|
-
<tr>
|
|
1015
|
-
<td>
|
|
1016
|
-
<pre class="lines">
|
|
1017
|
-
|
|
1018
|
-
|
|
1019
|
-
48
|
|
1020
|
-
49
|
|
1021
|
-
50</pre>
|
|
1022
|
-
</td>
|
|
1023
|
-
<td>
|
|
1024
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 48</span>
|
|
1025
|
-
|
|
1026
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_recurrence'>recurrence</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1027
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_recurrence_func'>recurrence_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
1028
|
-
<span class='kw'>end</span></pre>
|
|
1029
|
-
</td>
|
|
1030
|
-
</tr>
|
|
1031
|
-
</table>
|
|
1032
|
-
</div>
|
|
1033
|
-
|
|
1034
|
-
<div class="method_details ">
|
|
1035
|
-
<h3 class="signature " id="report-instance_method">
|
|
1036
|
-
|
|
1037
|
-
- (<tt>Object</tt>) <strong>report</strong>(&block)
|
|
1038
|
-
|
|
1039
|
-
|
|
1040
|
-
|
|
1041
|
-
|
|
1042
|
-
|
|
1043
|
-
</h3><div class="docstring">
|
|
1044
|
-
<div class="discussion">
|
|
1045
|
-
|
|
1046
|
-
<p>Report on evaluations</p>
|
|
1047
|
-
|
|
1048
|
-
|
|
1049
|
-
</div>
|
|
1050
|
-
</div>
|
|
1051
|
-
<div class="tags">
|
|
1052
|
-
|
|
1053
|
-
|
|
1054
|
-
</div><table class="source_code">
|
|
1055
|
-
<tr>
|
|
1056
|
-
<td>
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<pre class="lines">
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105</pre>
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<td>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 103</span>
|
|
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|
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|
|
1067
|
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<span class='kw'>def</span> <span class='id identifier rubyid_report'>report</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1068
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_report_hook'>report_hook</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
1069
|
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<span class='kw'>end</span></pre>
|
|
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|
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</td>
|
|
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|
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</tr>
|
|
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|
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</table>
|
|
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|
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</div>
|
|
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|
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|
|
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|
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<div class="method_details ">
|
|
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|
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<h3 class="signature " id="run_engine-instance_method">
|
|
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|
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|
|
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|
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- (<tt>Object</tt>) <strong>run_engine</strong>(&block)
|
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|
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|
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|
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</h3><div class="docstring">
|
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|
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<div class="discussion">
|
|
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|
-
|
|
1087
|
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<p>Run the engine. The block is called on each generation.</p>
|
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|
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|
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|
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</div>
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|
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</div><table class="source_code">
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<pre class="lines">
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|
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|
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108
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110
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111</pre>
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|
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</td>
|
|
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|
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<td>
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 108</span>
|
|
1108
|
-
|
|
1109
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_run_engine'>run_engine</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1110
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_end_run_func'>end_run_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
1111
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_run'>run</span>
|
|
1112
|
-
<span class='kw'>end</span></pre>
|
|
1113
|
-
</td>
|
|
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|
-
</tr>
|
|
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|
-
</table>
|
|
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|
-
</div>
|
|
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|
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|
|
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|
-
<div class="method_details ">
|
|
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|
-
<h3 class="signature " id="simple_fitness_error-instance_method">
|
|
1120
|
-
|
|
1121
|
-
- (<tt>Object</tt>) <strong>simple_fitness_error</strong>(v1, v2)
|
|
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|
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|
|
1123
|
-
|
|
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|
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|
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|
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|
|
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|
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</h3><div class="docstring">
|
|
1128
|
-
<div class="discussion">
|
|
1129
|
-
|
|
1130
|
-
<p>Helper function to do a simple fitness calculation on the basis of the sum
|
|
1131
|
-
of the square of the diffences of the element in the two vectors.</p>
|
|
1132
|
-
|
|
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|
-
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|
1134
|
-
</div>
|
|
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|
-
</div>
|
|
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|
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<div class="tags">
|
|
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|
-
|
|
1138
|
-
|
|
1139
|
-
</div><table class="source_code">
|
|
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|
-
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|
|
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|
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|
|
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|
-
<pre class="lines">
|
|
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|
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|
|
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|
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|
|
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|
-
95
|
|
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|
-
96
|
|
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|
-
97</pre>
|
|
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|
-
</td>
|
|
1149
|
-
<td>
|
|
1150
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 95</span>
|
|
1151
|
-
|
|
1152
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_simple_fitness_error'>simple_fitness_error</span><span class='lparen'>(</span><span class='id identifier rubyid_v1'>v1</span><span class='comma'>,</span> <span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span>
|
|
1153
|
-
<span class='id identifier rubyid_sqrt'>sqrt</span> <span class='id identifier rubyid_v1'>v1</span><span class='period'>.</span><span class='id identifier rubyid_zip'>zip</span><span class='lparen'>(</span><span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='lparen'>(</span><span class='id identifier rubyid_a'>a</span> <span class='op'>-</span> <span class='id identifier rubyid_b'>b</span><span class='rparen'>)</span> <span class='op'>**</span> <span class='float'>2.0</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_m'>m</span><span class='comma'>,</span> <span class='id identifier rubyid_c'>c</span><span class='op'>|</span> <span class='id identifier rubyid_m'>m</span> <span class='op'>+</span> <span class='id identifier rubyid_c'>c</span><span class='rbrace'>}</span>
|
|
1154
|
-
<span class='kw'>end</span></pre>
|
|
1155
|
-
</td>
|
|
1156
|
-
</tr>
|
|
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|
-
</table>
|
|
1158
|
-
</div>
|
|
1159
|
-
|
|
1160
|
-
<div class="method_details ">
|
|
1161
|
-
<h3 class="signature " id="stop_on_fitness-instance_method">
|
|
1162
|
-
|
|
1163
|
-
- (<tt>Object</tt>) <strong>stop_on_fitness</strong>(&block)
|
|
1164
|
-
|
|
1165
|
-
|
|
1166
|
-
|
|
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|
-
|
|
1168
|
-
|
|
1169
|
-
</h3><div class="docstring">
|
|
1170
|
-
<div class="discussion">
|
|
1171
|
-
|
|
1172
|
-
<p>Stop the progression once the fitness criteria is reached for the most fit
|
|
1173
|
-
critter</p>
|
|
1174
|
-
|
|
1175
|
-
|
|
1176
|
-
</div>
|
|
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|
-
</div>
|
|
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|
-
<div class="tags">
|
|
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|
-
|
|
1180
|
-
|
|
1181
|
-
</div><table class="source_code">
|
|
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|
-
<tr>
|
|
1183
|
-
<td>
|
|
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|
-
<pre class="lines">
|
|
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|
-
|
|
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|
-
|
|
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|
-
75
|
|
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|
-
76
|
|
1189
|
-
77</pre>
|
|
1190
|
-
</td>
|
|
1191
|
-
<td>
|
|
1192
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 75</span>
|
|
1193
|
-
|
|
1194
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_stop_on_fitness'>stop_on_fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1195
|
-
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_stop_on_fit_func'>stop_on_fit_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
1196
|
-
<span class='kw'>end</span></pre>
|
|
1197
|
-
</td>
|
|
1198
|
-
</tr>
|
|
1199
|
-
</table>
|
|
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|
-
</div>
|
|
1201
|
-
|
|
1202
|
-
<div class="method_details ">
|
|
1203
|
-
<h3 class="signature " id="uncondition_boolean_vector-instance_method">
|
|
1204
|
-
|
|
1205
|
-
- (<tt>Object</tt>) <strong>uncondition_boolean_vector</strong>(vec, sig = :tanh)
|
|
1206
|
-
|
|
1207
|
-
|
|
1208
|
-
|
|
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|
-
|
|
1210
|
-
|
|
1211
|
-
</h3><div class="docstring">
|
|
1212
|
-
<div class="discussion">
|
|
1213
|
-
|
|
1214
|
-
<p>Helper function to Uncondition boolean vectors to be +1 if true, -1 if
|
|
1215
|
-
false FIXME we need a better discrimination function</p>
|
|
1216
|
-
|
|
1217
|
-
|
|
1218
|
-
</div>
|
|
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|
-
</div>
|
|
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|
-
<div class="tags">
|
|
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|
-
|
|
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|
-
|
|
1223
|
-
</div><table class="source_code">
|
|
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|
-
<tr>
|
|
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|
-
<td>
|
|
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|
-
<pre class="lines">
|
|
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|
-
|
|
1228
|
-
|
|
1229
|
-
88
|
|
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|
-
89
|
|
1231
|
-
90</pre>
|
|
1232
|
-
</td>
|
|
1233
|
-
<td>
|
|
1234
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 88</span>
|
|
1235
|
-
|
|
1236
|
-
<span class='kw'>def</span> <span class='id identifier rubyid_uncondition_boolean_vector'>uncondition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
1237
|
-
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_o'>o</span><span class='op'>|</span> <span class='id identifier rubyid_o'>o</span> <span class='op'>></span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='float'>0.5</span> <span class='op'>:</span> <span class='int'>0</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='kw'>true</span> <span class='op'>:</span> <span class='kw'>false</span><span class='rbrace'>}</span>
|
|
1238
|
-
<span class='kw'>end</span></pre>
|
|
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|
-
</td>
|
|
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|
-
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|
|
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|
-
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|
|
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-
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|
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|
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|
|
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|
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Generated on Sun Apr 13 15:54:01 2014 by
|
|
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|
-
<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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|
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|
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0.8.7.4 (ruby-2.1.1).
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