RubyGems - rubyneat - Versions diffs - 0.3.5.alpha.3 → 0.3.5.alpha.5 - Mend

rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5

Files changed (252) hide show

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data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
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data/doc/NEAT/Neuron.html DELETED Viewed

@@ -1,1067 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-<title>
-  Class: NEAT::Neuron
-    &mdash; Documentation by YARD 0.8.7.4
-</title>
-  <link rel="stylesheet" href="../css/style.css" type="text/css" charset="utf-8" />
-  <link rel="stylesheet" href="../css/common.css" type="text/css" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  hasFrames = window.top.frames.main ? true : false;
-  relpath = '../';
-  framesUrl = "../frames.html#!NEAT/Neuron.html";
-</script>
-  <script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
-  <script type="text/javascript" charset="utf-8" src="../js/app.js"></script>
-  </head>
-  <body>
-    <div id="header">
-      <div id="menu">
-    <a href="../_index.html">Index (N)</a> &raquo;
-    <span class='title'><span class='object_link'><a href="../NEAT.html" title="NEAT (module)">NEAT</a></span></span>
-     &raquo;
-    <span class="title">Neuron</span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-    <a class="full_list_link" id="class_list_link"
-        href="../class_list.html">
-      Class List
-    </a>
-    <a class="full_list_link" id="method_list_link"
-        href="../method_list.html">
-      Method List
-    </a>
-    <a class="full_list_link" id="file_list_link"
-        href="../file_list.html">
-      File List
-    </a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><h1>Class: NEAT::Neuron
-</h1>
-<dl class="box">
-    <dt class="r1">Inherits:</dt>
-    <dd class="r1">
-      <span class="inheritName"><span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></span>
-        <ul class="fullTree">
-          <li>Object</li>
-            <li class="next"><span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></li>
-            <li class="next">NEAT::Neuron</li>
-        </ul>
-        <a href="#" class="inheritanceTree">show all</a>
-      </dd>
-      <dt class="r2">Includes:</dt>
-      <dd class="r2">Math, <span class='object_link'><a href="Graph.html" title="NEAT::Graph (module)">Graph</a></span></dd>
-    <dt class="r1 last">Defined in:</dt>
-    <dd class="r1 last">lib/rubyneat/neuron.rb</dd>
-</dl>
-<div class="clear"></div>
-<h2>Overview</h2><div class="docstring">
-  <div class="discussion">
-<h1 id="label-Neuron+--+Basis+of+all+Neat+Neuron+types.">Neuron – Basis of all Neat Neuron types.</h1>
-<p>Normally contains primatives which aids in its own expression, but the
-details of this remains to be worked out.</p>
-  </div>
-</div>
-<div class="tags">
-</div><div id="subclasses">
-  <h2>Direct Known Subclasses</h2>
-  <p class="children"><span class='object_link'><a href="BasicNeuronTypes/CosineNeuron.html" title="NEAT::BasicNeuronTypes::CosineNeuron (class)">BasicNeuronTypes::CosineNeuron</a></span>, <span class='object_link'><a href="BasicNeuronTypes/InputNeuron.html" title="NEAT::BasicNeuronTypes::InputNeuron (class)">BasicNeuronTypes::InputNeuron</a></span>, <span class='object_link'><a href="BasicNeuronTypes/SigmoidNeuron.html" title="NEAT::BasicNeuronTypes::SigmoidNeuron (class)">BasicNeuronTypes::SigmoidNeuron</a></span>, <span class='object_link'><a href="BasicNeuronTypes/SineNeuron.html" title="NEAT::BasicNeuronTypes::SineNeuron (class)">BasicNeuronTypes::SineNeuron</a></span>, <span class='object_link'><a href="BasicNeuronTypes/TanhNeuron.html" title="NEAT::BasicNeuronTypes::TanhNeuron (class)">BasicNeuronTypes::TanhNeuron</a></span></p>
-</div>
-  <h2>Constant Summary</h2>
-    <dl class="constants">
-        <dt id="neuron_types-classvariable" class="">@@neuron_types =
-          <div class="docstring">
-  <div class="discussion">
-<p>List of neuron types defined.</p>
-  </div>
-</div>
-<div class="tags">
-</div>
-        </dt>
-        <dd><pre class="code"><span class='lbracket'>[</span><span class='rbracket'>]</span></pre></dd>
-    </dl>
-  <h2>Instance Attribute Summary <small>(<a href="#" class="summary_toggle">collapse</a>)</small></h2>
-  <ul class="summary">
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#genotype-instance_method" title="#genotype (instance method)">- (Object) <strong>genotype</strong> </a>
-  </span>
-      <span class="note title readonly">readonly</span>
-    <span class="summary_desc"><div class='inline'>
-<p>Genotype to which we belong.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#heirarchy_number-instance_method" title="#heirarchy_number (instance method)">- (Object) <strong>heirarchy_number</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>(assigned by wire!) Heirarchy number in the Genome / Critter We need this
-to assure we add genes in the proper order.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#output-instance_method" title="#output (instance method)">- (Object) <strong>output</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>This is true if this is an output neuron.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#trait-instance_method" title="#trait (instance method)">- (Object) <strong>trait</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Returns the value of attribute trait.</p>
-</div></span>
-</li>
-  </ul>
-  <h3 class="inherited">Attributes inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
-  <p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
-    <h2>
-      Class Method Summary
-      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
-    </h2>
-    <ul class="summary">
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#bias%3F-class_method" title="bias? (class method)">+ (Boolean) <strong>bias?</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'></div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#inherited-class_method" title="inherited (class method)">+ (Object) <strong>inherited</strong>(clazz) </a>
-  </span>
-    <span class="summary_desc"><div class='inline'></div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#input%3F-class_method" title="input? (class method)">+ (Boolean) <strong>input?</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Class is is of Input type?.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#neuron_types-class_method" title="neuron_types (class method)">+ (Object) <strong>neuron_types</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>List of distinct neuron types (classes).</p>
-</div></span>
-</li>
-    </ul>
-    <h2>
-      Instance Method Summary
-      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
-    </h2>
-    <ul class="summary">
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#bias%3F-instance_method" title="#bias? (instance method)">- (Boolean) <strong>bias?</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'></div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#express-instance_method" title="#express (instance method)">- (Object) <strong>express</strong>(instance) </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Function must be implemented by subclasses for phenotype generation.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#input%3F-instance_method" title="#input? (instance method)">- (Boolean) <strong>input?</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'></div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#output%3F-instance_method" title="#output? (instance method)">- (Boolean) <strong>output?</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Instantiation is of outout type?.</p>
-</div></span>
-</li>
-    </ul>
-  <h3 class="inherited">Methods included from <span class='object_link'><a href="Graph.html" title="NEAT::Graph (module)">Graph</a></span></h3>
-  <p class="inherited"><span class='object_link'><a href="Graph.html#%3C%3C-instance_method" title="NEAT::Graph#&lt;&lt; (method)">#<<</a></span>, <span class='object_link'><a href="Graph.html#add-instance_method" title="NEAT::Graph#add (method)">#add</a></span>, <span class='object_link'><a href="Graph.html#clear_graph-instance_method" title="NEAT::Graph#clear_graph (method)">#clear_graph</a></span>, <span class='object_link'><a href="Graph.html#inputs-instance_method" title="NEAT::Graph#inputs (method)">#inputs</a></span></p>
-  <h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
-  <p class="inherited"><span class='object_link'><a href="NeatOb.html#initialize-instance_method" title="NEAT::NeatOb#initialize (method)">#initialize</a></span>, <span class='object_link'><a href="NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
-  <div id="constructor_details" class="method_details_list">
-  <h2>Constructor Details</h2>
-    <p class="notice">This class inherits a constructor from <span class='object_link'><a href="NeatOb.html#initialize-instance_method" title="NEAT::NeatOb#initialize (method)">NEAT::NeatOb</a></span></p>
-</div>
-  <div id="instance_attr_details" class="attr_details">
-    <h2>Instance Attribute Details</h2>
-      <span id=""></span>
-      <div class="method_details first">
-  <h3 class="signature first" id="genotype-instance_method">
-    - (<tt>Object</tt>) <strong>genotype</strong>  <span class="extras">(readonly)</span>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Genotype to which we belong</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-19
-20
-21</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 19</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_genotype'>genotype</span>
-  <span class='ivar'>@genotype</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id="heirarchy_number=-instance_method"></span>
-      <div class="method_details ">
-  <h3 class="signature " id="heirarchy_number-instance_method">
-    - (<tt>Object</tt>) <strong>heirarchy_number</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>(assigned by wire!) Heirarchy number in the Genome / Critter We need this
-to assure we add genes in the proper order. This will be recalculated every
-time a new neuron is added.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-25
-26
-27</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 25</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_heirarchy_number'>heirarchy_number</span>
-  <span class='ivar'>@heirarchy_number</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id="output=-instance_method"></span>
-      <div class="method_details ">
-  <h3 class="signature " id="output-instance_method">
-    - (<tt>Object</tt>) <strong>output</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>This is true if this is an output neuron.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-28
-29
-30</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 28</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_output'>output</span>
-  <span class='ivar'>@output</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id="trait=-instance_method"></span>
-      <div class="method_details ">
-  <h3 class="signature " id="trait-instance_method">
-    - (<tt>Object</tt>) <strong>trait</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Returns the value of attribute trait</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-20
-21
-22</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 20</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_trait'>trait</span>
-  <span class='ivar'>@trait</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-  <div id="class_method_details" class="method_details_list">
-    <h2>Class Method Details</h2>
-      <div class="method_details first">
-  <h3 class="signature first" id="bias?-class_method">
-    + (<tt>Boolean</tt>) <strong>bias?</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-  </div>
-</div>
-<div class="tags">
-<p class="tag_title">Returns:</p>
-<ul class="return">
-    <li>
-        <span class='type'>(<tt>Boolean</tt>)</span>
-    </li>
-</ul>
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-37</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 37</span>
-<span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_bias?'>bias?</span> <span class='semicolon'>;</span> <span class='kw'>false</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="inherited-class_method">
-    + (<tt>Object</tt>) <strong>inherited</strong>(clazz)
-</h3><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-43
-44
-45</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 43</span>
-<span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_inherited'>inherited</span><span class='lparen'>(</span><span class='id identifier rubyid_clazz'>clazz</span><span class='rparen'>)</span>
-  <span class='cvar'>@@neuron_types</span> <span class='op'>&lt;&lt;</span> <span class='id identifier rubyid_clazz'>clazz</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="input?-class_method">
-    + (<tt>Boolean</tt>) <strong>input?</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Class is is of Input type?</p>
-  </div>
-</div>
-<div class="tags">
-<p class="tag_title">Returns:</p>
-<ul class="return">
-    <li>
-        <span class='type'>(<tt>Boolean</tt>)</span>
-    </li>
-</ul>
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-34</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 34</span>
-<span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_input?'>input?</span> <span class='semicolon'>;</span> <span class='kw'>false</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="neuron_types-class_method">
-    + (<tt>Object</tt>) <strong>neuron_types</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>List of distinct neuron types (classes)</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-48</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 48</span>
-<span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_neuron_types'>neuron_types</span><span class='semicolon'>;</span> <span class='cvar'>@@neuron_types</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-  <div id="instance_method_details" class="method_details_list">
-    <h2>Instance Method Details</h2>
-      <div class="method_details first">
-  <h3 class="signature first" id="bias?-instance_method">
-    - (<tt>Boolean</tt>) <strong>bias?</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-  </div>
-</div>
-<div class="tags">
-<p class="tag_title">Returns:</p>
-<ul class="return">
-    <li>
-        <span class='type'>(<tt>Boolean</tt>)</span>
-    </li>
-</ul>
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-38</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 38</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_bias?'>bias?</span> <span class='semicolon'>;</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_class'>class</span><span class='period'>.</span><span class='id identifier rubyid_bias?'>bias?</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="express-instance_method">
-    - (<tt>Object</tt>) <strong>express</strong>(instance)
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Function must be implemented by subclasses for phenotype generation.
-Basically, an instance is passed to this function and it will add a
-function to sum all inputs and a apply an operator to the sum.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-54
-55
-56</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 54</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_express'>express</span><span class='lparen'>(</span><span class='id identifier rubyid_instance'>instance</span><span class='rparen'>)</span>
-  <span class='id identifier rubyid_raise'>raise</span> <span class='const'>NeatException</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>express() must be implemented by subclass.</span><span class='tstring_end'>&quot;</span></span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="input?-instance_method">
-    - (<tt>Boolean</tt>) <strong>input?</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-  </div>
-</div>
-<div class="tags">
-<p class="tag_title">Returns:</p>
-<ul class="return">
-    <li>
-        <span class='type'>(<tt>Boolean</tt>)</span>
-    </li>
-</ul>
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-35</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 35</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_input?'>input?</span> <span class='semicolon'>;</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_class'>class</span><span class='period'>.</span><span class='id identifier rubyid_input?'>input?</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="output?-instance_method">
-    - (<tt>Boolean</tt>) <strong>output?</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Instantiation is of outout type?</p>
-  </div>
-</div>
-<div class="tags">
-<p class="tag_title">Returns:</p>
-<ul class="return">
-    <li>
-        <span class='type'>(<tt>Boolean</tt>)</span>
-    </li>
-</ul>
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-41</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/neuron.rb', line 41</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_output?'>output?</span> <span class='semicolon'>;</span> <span class='op'>!</span><span class='op'>!</span><span class='ivar'>@output</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-</div>
-    <div id="footer">
-  Generated on Sun Apr 13 15:54:02 2014 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.8.7.4 (ruby-2.1.1).
-</div>
-  </body>
-</html>