rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
- data/Gemfile.lock +39 -33
- data/README.md +66 -0
- data/Rakefile +19 -2
- data/bin/neat +4 -60
- data/lib/rubyneat/cli.rb +5 -0
- data/lib/rubyneat/cli/generate.rb +131 -0
- data/lib/rubyneat/cli/main.rb +54 -0
- data/lib/rubyneat/cli/templates/generate/Gemfile.tt +17 -0
- data/lib/rubyneat/cli/templates/generate/README.md.tt +1 -0
- data/lib/rubyneat/cli/templates/generate/bin/neat.tt +14 -0
- data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
- data/rubyneat.gemspec +73 -297
- data/rubyneat.gemspec.orig +384 -0
- metadata +76 -292
- data/.idea/.name +0 -1
- data/.idea/.rakeTasks +0 -7
- data/.idea/dictionaries/trader.xml +0 -3
- data/.idea/encodings.xml +0 -5
- data/.idea/misc.xml +0 -5
- data/.idea/modules.xml +0 -9
- data/.idea/rubyneat.iml +0 -198
- data/.idea/runConfigurations/invpend_neat.xml +0 -26
- data/.idea/runConfigurations/sigdebug_neat.xml +0 -24
- data/.idea/runConfigurations/xor_neat.xml +0 -26
- data/.idea/runConfigurations/xordebug_neat.xml +0 -24
- data/.idea/runConfigurations/xorsin_neat.xml +0 -24
- data/.idea/scopes/scope_settings.xml +0 -5
- data/.idea/vcs.xml +0 -7
- data/.idea/workspace.xml +0 -1151
- data/.yardoc/checksums +0 -11
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Guardfile +0 -8
- data/doc/ControllerPoint.html +0 -125
- data/doc/CuteA.html +0 -286
- data/doc/CuteB.html +0 -297
- data/doc/DSL.html +0 -883
- data/doc/NEAT.html +0 -588
- data/doc/NEAT/BasicNeuronTypes.html +0 -136
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -518
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -366
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -275
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -274
- data/doc/NEAT/Controller.html +0 -2490
- data/doc/NEAT/Controller/NeatSettings.html +0 -3985
- data/doc/NEAT/Critter.html +0 -1037
- data/doc/NEAT/Critter/Genotype.html +0 -1601
- data/doc/NEAT/Critter/Genotype/Gene.html +0 -979
- data/doc/NEAT/Critter/Phenotype.html +0 -603
- data/doc/NEAT/DSL.html +0 -1255
- data/doc/NEAT/Evaluator.html +0 -420
- data/doc/NEAT/Evolver.html +0 -602
- data/doc/NEAT/Evolver/CritterOp.html +0 -551
- data/doc/NEAT/Expressor.html +0 -327
- data/doc/NEAT/Graph.html +0 -402
- data/doc/NEAT/Graph/DependencyResolver.html +0 -478
- data/doc/NEAT/Graph/GraphException.html +0 -123
- data/doc/NEAT/NeatException.html +0 -123
- data/doc/NEAT/NeatOb.html +0 -567
- data/doc/NEAT/Neuron.html +0 -1067
- data/doc/NEAT/Operator.html +0 -162
- data/doc/NEAT/Population.html +0 -1961
- data/doc/NEAT/Trait.html +0 -169
- data/doc/_index.html +0 -373
- data/doc/class_list.html +0 -54
- data/doc/css/common.css +0 -1
- data/doc/css/full_list.css +0 -57
- data/doc/css/style.css +0 -339
- data/doc/file_list.html +0 -53
- data/doc/frames.html +0 -26
- data/doc/index.html +0 -373
- data/doc/js/app.js +0 -219
- data/doc/js/full_list.js +0 -178
- data/doc/js/jquery.js +0 -4
- data/doc/method_list.html +0 -1415
- data/doc/top-level-namespace.html +0 -164
- data/foo/foo_aquarium_example.rb +0 -38
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- data/foo/foo_rubygoo.rb +0 -104
- data/foo/foo_sdl.rb +0 -34
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- data/neater/invpend_neat.rb +0 -150
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- data/neater/rnlib/xor.rb +0 -10
- data/neater/sigdebug_neat.rb +0 -136
- data/neater/xoranalog_neat.rb +0 -138
- data/neater/xorsin_neat.rb +0 -143
- data/projectFilesBackup/.idea/rubyneat.iml +0 -180
- data/public/.directory +0 -4
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- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +0 -116
- data/rdoc/CuteA.html +0 -177
- data/rdoc/CuteB.html +0 -178
- data/rdoc/DSLSetup.html +0 -177
- data/rdoc/GameTestWindow.html +0 -242
- data/rdoc/GameWindow.html +0 -292
- data/rdoc/Gemfile.html +0 -215
- data/rdoc/Gemfile_lock.html +0 -327
- data/rdoc/GraphTest.html +0 -210
- data/rdoc/Guardfile.html +0 -198
- data/rdoc/InvertedPendulum.html +0 -198
- data/rdoc/InvertedPendulum/Cart.html +0 -668
- data/rdoc/InvertedPendulum/DSL.html +0 -259
- data/rdoc/InvertedPendulum/InvPendWindow.html +0 -402
- data/rdoc/Logger.html +0 -98
- data/rdoc/NEAT.html +0 -422
- data/rdoc/NEAT/BasicNeuronTypes.html +0 -107
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -265
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -206
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -161
- data/rdoc/NEAT/Controller.html +0 -729
- data/rdoc/NEAT/Controller/NeatSettings.html +0 -880
- data/rdoc/NEAT/Critter.html +0 -489
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- data/rdoc/NEAT/Critter/Genotype/Gene.html +0 -457
- data/rdoc/NEAT/Critter/Phenotype.html +0 -330
- data/rdoc/NEAT/DSL.html +0 -729
- data/rdoc/NEAT/Evaluator.html +0 -256
- data/rdoc/NEAT/Evolver.html +0 -891
- data/rdoc/NEAT/Evolver/CritterOp.html +0 -349
- data/rdoc/NEAT/Expressor.html +0 -402
- data/rdoc/NEAT/Graph.html +0 -263
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- data/rdoc/NEAT/NeatOb.html +0 -325
- data/rdoc/NEAT/Neuron.html +0 -481
- data/rdoc/NEAT/Operator.html +0 -109
- data/rdoc/NEAT/Population.html +0 -935
- data/rdoc/NEAT/Trait.html +0 -117
- data/rdoc/Object.html +0 -384
- data/rdoc/Phi.html +0 -98
- data/rdoc/Player.html +0 -383
- data/rdoc/Rakefile.html +0 -254
- data/rdoc/RubyNEAT.html +0 -98
- data/rdoc/RubyNEAT/Application.html +0 -105
- data/rdoc/SDL.html +0 -98
- data/rdoc/SDL/Event2.html +0 -98
- data/rdoc/Vector.html +0 -195
- data/rdoc/created.rid +0 -125
- data/rdoc/doc/ControllerPoint_html.html +0 -299
- data/rdoc/doc/CuteA_html.html +0 -438
- data/rdoc/doc/CuteB_html.html +0 -436
- data/rdoc/doc/DSL_html.html +0 -992
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +0 -617
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +0 -498
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +0 -412
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- data/rdoc/doc/NEAT/Evaluator_html.html +0 -556
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +0 -690
- data/rdoc/doc/NEAT/Evolver_html.html +0 -677
- data/rdoc/doc/NEAT/Expressor_html.html +0 -468
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +0 -598
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +0 -299
- data/rdoc/doc/NEAT/Graph_html.html +0 -527
- data/rdoc/doc/NEAT/NeatException_html.html +0 -299
- data/rdoc/doc/NEAT/NeatOb_html.html +0 -671
- data/rdoc/doc/NEAT/Neuron_html.html +0 -1095
- data/rdoc/doc/NEAT/Operator_html.html +0 -337
- data/rdoc/doc/NEAT/Population_html.html +0 -1795
- data/rdoc/doc/NEAT/Trait_html.html +0 -344
- data/rdoc/doc/NEAT_html.html +0 -736
- data/rdoc/doc/_index_html.html +0 -559
- data/rdoc/doc/class_list_html.html +0 -369
- data/rdoc/doc/css/common_css.html +0 -188
- data/rdoc/doc/css/full_list_css.html +0 -243
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- data/rdoc/doc/frames_html.html +0 -217
- data/rdoc/doc/index_html.html +0 -559
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- data/rdoc/doc/top-level-namespace_html.html +0 -317
- data/rdoc/fonts.css +0 -167
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- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
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- data/rdoc/rdoc.css +0 -580
- data/rdoc/rubyneat_gemspec.html +0 -387
- data/rdoc/table_of_contents.html +0 -2502
- data/rdoc/xordebug_log.html +0 -170598
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<h1 id="method-i-add_gene-21-label-Add+a+gene+to+the+genome">Add a gene to the genome<span><a href="#method-i-add_gene-21-label-Add+a+gene+to+the+genome">¶</a> <a href="#documentation">↑</a></span></h1>
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Constructs for handling recurrency are present in Expressor.</pre>
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<span class="ruby-identifier">gene</span> = <span class="ruby-constant">Critter</span><span class="ruby-operator">::</span><span class="ruby-constant">Genotype</span><span class="ruby-operator">::</span><span class="ruby-constant">Gene</span>[<span class="ruby-identifier">crit</span>.<span class="ruby-identifier">genotype</span>, <span class="ruby-identifier">n1</span>.<span class="ruby-identifier">name</span>, <span class="ruby-identifier">n2</span>.<span class="ruby-identifier">name</span>, <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">gaussian</span>]
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<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"add_gene! Added gene #{gene}(#{n1.name} -> #{n2.name}) to #{crit}"</span>
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<h1 id="method-i-add_neuron-21-label-Add+a+neuron+to+given+critter">Add a neuron to given critter<span><a href="#method-i-add_neuron-21-label-Add+a+neuron+to+given+critter">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>Here, we add a neuron by randomly picking a
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 265</span>
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<span class="ruby-identifier">g1</span> = <span class="ruby-constant">Critter</span><span class="ruby-operator">::</span><span class="ruby-constant">Genotype</span><span class="ruby-operator">::</span><span class="ruby-constant">Gene</span>[<span class="ruby-identifier">crit</span>.<span class="ruby-identifier">genotype</span>, <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>, <span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>, <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">weight</span>]
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<span class="ruby-identifier">g2</span> = <span class="ruby-constant">Critter</span><span class="ruby-operator">::</span><span class="ruby-constant">Genotype</span><span class="ruby-operator">::</span><span class="ruby-constant">Gene</span>[<span class="ruby-identifier">crit</span>.<span class="ruby-identifier">genotype</span>, <span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>, <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">out_neuron</span>, <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">weight</span>]
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<h1 id="method-i-express_genes-21-label-Expression+of+the+Genotype+as+a+Phenotype.">Expression of the Genotype as a Phenotype.<span><a href="#method-i-express_genes-21-label-Expression+of+the+Genotype+as+a+Phenotype.">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>What this really does is create the function that calls
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This makes use of the Graph plugin for Neurons.</pre>
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<h1 id="method-i-express_genes-21-label-Recurrency+and+Expression+of+Genes">Recurrency and Expression of Genes<span><a href="#method-i-express_genes-21-label-Recurrency+and+Expression+of+Genes">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>A simple approach has been taken here to allow for recurrency in
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our Critters. Basically, a looping construct has been put around the
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activation of the neurons so that recurrency can be done in 2 ways:
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of the phenotype, subsequent activations will iterate the network.</pre>
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<h2 id="method-i-express_genes-21-label-Cavets+to+recurrent+activation">Cavets to recurrent activation<span><a href="#method-i-express_genes-21-label-Cavets+to+recurrent+activation">¶</a> <a href="#documentation">↑</a></span></h2>
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<pre>For (2) above, the input neurons would be overwritten on each subsequent call.
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not be an issue, though we may allow for this at a future date.</pre>
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<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 58</span>
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<span class="ruby-identifier">g</span> = <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>
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<span class="ruby-comment"># 'stimulate' function call (really should be 'activate', but we'll reserve this for something else)</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-node">" def #{NEAT::STIMULUS}("</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_inputs</span>.<span class="ruby-identifier">reject</span>{ <span class="ruby-operator">|</span><span class="ruby-identifier">sym</span><span class="ruby-operator">|</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_inputs</span>[<span class="ruby-identifier">sym</span>].<span class="ruby-identifier">bias?</span> }.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-identifier">sym</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">", "</span>)
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">")\n"</span>
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<span class="ruby-comment"># Assign all the parameters to instance variables.</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_inputs</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-node">" @#{sym} = #{sym}\n"</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">""</span>)
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" loop {\n"</span>
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<span class="ruby-comment"># Resolve the order in which we shall call the neurons</span>
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<span class="ruby-ivar">@resolved</span>, <span class="ruby-ivar">@dependencies</span> = <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-constant">Graph</span><span class="ruby-operator">::</span><span class="ruby-constant">DependencyResolver</span>[<span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_outputs</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">s</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-identifier">neu</span>}].<span class="ruby-identifier">resolve</span>
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<span class="ruby-comment"># And now call them in that order!</span>
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<span class="ruby-ivar">@resolved</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">neu</span><span class="ruby-operator">|</span>
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<span class="ruby-keyword">if</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_gene_map</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-node">" @#{neu.name} = #{neu.name}("</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_gene_map</span>[<span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>].<span class="ruby-identifier">map</span>{ <span class="ruby-operator">|</span><span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
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<span class="ruby-string">"%s * @%s"</span> <span class="ruby-operator">%</span> [<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">weight</span>, <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>]
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}.<span class="ruby-identifier">join</span>(<span class="ruby-string">", "</span>) <span class="ruby-operator">+</span> <span class="ruby-string">")\n"</span>
|
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<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"Dangling neuron in critter #{critter} -- #{neu}"</span>
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<span class="ruby-comment"># And now return the result as a vector of outputs.</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" @_outvec = ["</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_outputs</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-node">"@#{sym}"</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">','</span>) <span class="ruby-operator">+</span> <span class="ruby-string">"]\n"</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" break unless block_given?\n"</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" break unless yield @_outvec\n"</span>
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<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">init_code</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 32</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">express_neurons!</span>(<span class="ruby-identifier">critter</span>)
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<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">neurons</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">name</span>, <span class="ruby-identifier">neuron</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">neuron</span>.<span class="ruby-identifier">express</span>(<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">phenotype</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">neuron</span>.<span class="ruby-identifier">input?</span> <span class="ruby-keyword">and</span> <span class="ruby-keyword">not</span> <span class="ruby-identifier">neuron</span>.<span class="ruby-identifier">bias?</span>
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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