rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
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<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">cost_func</span>.(<span class="ruby-identifier">fitvec</span>, <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">fitness_cost</span>)
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<span class="ruby-identifier">fitvec</span>.<span class="ruby-identifier">reduce</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>,<span class="ruby-identifier">r</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span><span class="ruby-operator">+</span><span class="ruby-identifier">r</span>} <span class="ruby-operator">/</span> <span class="ruby-identifier">fitvec</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">to_f</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">fitness_cost</span>
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<h1 id="class-NEAT::Evolver-label-Evolver+--+Basis+of+all+evolvers."><a href="Evolver.html">Evolver</a> – Basis of all evolvers.<span><a href="#class-NEAT::Evolver-label-Evolver+--+Basis+of+all+evolvers.">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 53</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 20</span>
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<span class="ruby-identifier">g</span> = <span class="ruby-constant">Critter</span><span class="ruby-operator">::</span><span class="ruby-constant">Genotype</span><span class="ruby-operator">::</span><span class="ruby-constant">Gene</span>[<span class="ruby-identifier">genotype</span>, <span class="ruby-identifier">input</span>, <span class="ruby-identifier">output</span>, <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">gaussian</span>]
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 31</span>
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<span class="ruby-keyword">if</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mate_only_prob</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-keyword">or</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator">></span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mate_only_prob</span>
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<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-string">"]]] End Neuron and Gene Giggling!\n"</span>
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<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-string">"*** Mating only!"</span>
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<p>Here we select candidates for mating. We must look at species and fitness
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 167</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">mate!</span>
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<span class="ruby-identifier">parm</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>
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<span class="ruby-identifier">popsize</span> = <span class="ruby-identifier">parm</span>.<span class="ruby-identifier">population_size</span>
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<span class="ruby-identifier">survmin</span> = <span class="ruby-identifier">parm</span>.<span class="ruby-identifier">survival_mininum_per_species</span>
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<span class="ruby-identifier">mlist</span> = [] <span class="ruby-comment"># list of chosen mating pairs of critters [crit1, crit2], or [:carryover, crit]</span>
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<span class="ruby-comment"># species list already sorted in descending order of fitness.</span>
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<span class="ruby-comment"># We will generate the approximate number of pairs that correspond</span>
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<span class="ruby-comment"># to the survivial_threshold percentage of the population,</span>
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<span class="ruby-comment"># then backfill with the most fit out of the top original population.</span>
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<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">species</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">sp</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">crem</span> = [(<span class="ruby-identifier">sp</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">surv</span>).<span class="ruby-identifier">ceil</span>, <span class="ruby-identifier">survmin</span>].<span class="ruby-identifier">max</span>
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<span class="ruby-identifier">log</span>.<span class="ruby-identifier">warn</span> <span class="ruby-node">"Minumum per species hit -- #{survmin}"</span> <span class="ruby-keyword">unless</span> <span class="ruby-identifier">crem</span> <span class="ruby-operator">></span> <span class="ruby-identifier">survmin</span>
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<span class="ruby-identifier">spsel</span> = <span class="ruby-identifier">sp</span>[<span class="ruby-value">0</span>, <span class="ruby-identifier">crem</span>]
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<span class="ruby-identifier">spsel</span> = <span class="ruby-identifier">sp</span> <span class="ruby-keyword">if</span> <span class="ruby-identifier">spsel</span>.<span class="ruby-identifier">empty?</span>
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<span class="ruby-identifier">crem</span>.<span class="ruby-identifier">times</span> <span class="ruby-keyword">do</span>
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<span class="ruby-identifier">mlist</span> <span class="ruby-operator"><<</span> [<span class="ruby-identifier">spsel</span>[<span class="ruby-identifier">rand</span> <span class="ruby-identifier">spsel</span>.<span class="ruby-identifier">size</span>], <span class="ruby-identifier">spsel</span>[<span class="ruby-identifier">rand</span> <span class="ruby-identifier">spsel</span>.<span class="ruby-identifier">size</span>]]
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<span class="ruby-comment"># And now for the backfilling</span>
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<span class="ruby-keyword">unless</span> <span class="ruby-identifier">mlist</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">>=</span> <span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">size</span>
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<span class="ruby-identifier">mlist</span> <span class="ruby-operator">+=</span> <span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>[<span class="ruby-value">0</span>, <span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">mlist</span>.<span class="ruby-identifier">size</span>].<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> [<span class="ruby-value">:carryover</span>, <span class="ruby-identifier">crit</span>]}
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<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span> = <span class="ruby-identifier">mlist</span>.<span class="ruby-identifier">map</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">crit1</span>, <span class="ruby-identifier">crit2</span><span class="ruby-operator">|</span>
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(<span class="ruby-identifier">crit1</span> <span class="ruby-operator">==</span> <span class="ruby-value">:carryover</span>) <span class="ruby-operator">?</span> <span class="ruby-identifier">crit2</span> <span class="ruby-operator">:</span> <span class="ruby-identifier">sex</span>(<span class="ruby-identifier">crit1</span>, <span class="ruby-identifier">crit2</span>)
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<div class="method-source-code" id="mutate_add_genes-21-source">
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 124</span>
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437
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_add_genes!</span>
|
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|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span>
|
|
439
|
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<span class="ruby-keyword">if</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator"><</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_add_gene_prob</span>
|
|
440
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"mutate_add_genes! for #{critter}"</span>
|
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441
|
-
<span class="ruby-ivar">@critter_op</span>.<span class="ruby-identifier">add_gene!</span> <span class="ruby-identifier">critter</span>
|
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442
|
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<span class="ruby-keyword">end</span>
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<span class="ruby-keyword">end</span>
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<span class="ruby-keyword">end</span></pre>
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</div>
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<div id="method-i-mutate_add_neurons-21" class="method-detail ">
|
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<div class="method-heading">
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|
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<span class="method-name">mutate_add_neurons!</span><span
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class="method-args">()</span>
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460
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-source-code" id="mutate_add_neurons-21-source">
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 151</span>
|
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475
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_add_neurons!</span>
|
|
476
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span>
|
|
477
|
-
<span class="ruby-keyword">if</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator"><</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_add_neuron_prob</span>
|
|
478
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"mutate_add_neurons! for #{critter}"</span>
|
|
479
|
-
<span class="ruby-ivar">@critter_op</span>.<span class="ruby-identifier">add_neuron!</span> <span class="ruby-identifier">critter</span>
|
|
480
|
-
<span class="ruby-keyword">end</span>
|
|
481
|
-
<span class="ruby-keyword">end</span>
|
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482
|
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<span class="ruby-keyword">end</span></pre>
|
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|
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</div>
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</div>
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491
|
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493
|
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<div id="method-i-mutate_change_gene_weights-21" class="method-detail ">
|
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494
|
-
|
|
495
|
-
<div class="method-heading">
|
|
496
|
-
<span class="method-name">mutate_change_gene_weights!</span><span
|
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497
|
-
class="method-args">()</span>
|
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498
|
-
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499
|
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<span class="method-click-advice">click to toggle source</span>
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|
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</div>
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<div class="method-description">
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506
|
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<p>Totally change weights to something completely different</p>
|
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|
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|
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|
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<div class="method-source-code" id="mutate_change_gene_weights-21-source">
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512
|
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 112</span>
|
|
513
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_change_gene_weights!</span>
|
|
514
|
-
<span class="ruby-ivar">@gchange</span> = <span class="ruby-constant">Distribution</span><span class="ruby-operator">::</span><span class="ruby-constant">Normal</span><span class="ruby-operator">::</span><span class="ruby-identifier">rng</span>(<span class="ruby-value">0</span>, <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_change_gene_weights_sd</span>) <span class="ruby-keyword">if</span> <span class="ruby-ivar">@gchange</span>.<span class="ruby-identifier">nil?</span>
|
|
515
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span>
|
|
516
|
-
<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">innov</span>, <span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
517
|
-
<span class="ruby-keyword">if</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator"><</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_change_gene_weights_prob</span>
|
|
518
|
-
<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">weight</span> = <span class="ruby-identifier">chg</span> = <span class="ruby-ivar">@gchange</span>.()
|
|
519
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> { <span class="ruby-node">"Change gene #{gene}.#{innov} by #{chg}"</span> }
|
|
520
|
-
<span class="ruby-keyword">end</span>
|
|
521
|
-
}
|
|
522
|
-
<span class="ruby-keyword">end</span>
|
|
523
|
-
<span class="ruby-keyword">end</span></pre>
|
|
524
|
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</div>
|
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525
|
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</div>
|
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|
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531
|
-
</div>
|
|
532
|
-
|
|
533
|
-
|
|
534
|
-
<div id="method-i-mutate_change_neurons-21" class="method-detail ">
|
|
535
|
-
|
|
536
|
-
<div class="method-heading">
|
|
537
|
-
<span class="method-name">mutate_change_neurons!</span><span
|
|
538
|
-
class="method-args">()</span>
|
|
539
|
-
|
|
540
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
541
|
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542
|
-
</div>
|
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|
-
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-
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|
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<div class="method-description">
|
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546
|
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547
|
-
<p>TODO Finish mutate_change_neurons!</p>
|
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|
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|
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<div class="method-source-code" id="mutate_change_neurons-21-source">
|
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553
|
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<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 161</span>
|
|
554
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_change_neurons!</span>
|
|
555
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">error</span> <span class="ruby-string">"mutate_change_neurons! NIY"</span>
|
|
556
|
-
<span class="ruby-keyword">end</span></pre>
|
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557
|
-
</div>
|
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|
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</div>
|
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|
-
</div>
|
|
565
|
-
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|
566
|
-
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567
|
-
<div id="method-i-mutate_disable_genes-21" class="method-detail ">
|
|
568
|
-
|
|
569
|
-
<div class="method-heading">
|
|
570
|
-
<span class="method-name">mutate_disable_genes!</span><span
|
|
571
|
-
class="method-args">()</span>
|
|
572
|
-
|
|
573
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
574
|
-
|
|
575
|
-
</div>
|
|
576
|
-
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577
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-
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|
-
<div class="method-description">
|
|
579
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-
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580
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-
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581
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-
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582
|
-
|
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583
|
-
|
|
584
|
-
|
|
585
|
-
<div class="method-source-code" id="mutate_disable_genes-21-source">
|
|
586
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 133</span>
|
|
587
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_disable_genes!</span>
|
|
588
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span>
|
|
589
|
-
<span class="ruby-keyword">if</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator"><</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_gene_disable_prob</span>
|
|
590
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"mutate_disable_genes! for #{critter}"</span>
|
|
591
|
-
<span class="ruby-ivar">@critter_op</span>.<span class="ruby-identifier">disable_gene!</span> <span class="ruby-identifier">critter</span>
|
|
592
|
-
<span class="ruby-keyword">end</span>
|
|
593
|
-
<span class="ruby-keyword">end</span>
|
|
594
|
-
<span class="ruby-keyword">end</span></pre>
|
|
595
|
-
</div>
|
|
596
|
-
|
|
597
|
-
</div>
|
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598
|
-
|
|
599
|
-
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600
|
-
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|
601
|
-
|
|
602
|
-
</div>
|
|
603
|
-
|
|
604
|
-
|
|
605
|
-
<div id="method-i-mutate_perturb_gene_weights-21" class="method-detail ">
|
|
606
|
-
|
|
607
|
-
<div class="method-heading">
|
|
608
|
-
<span class="method-name">mutate_perturb_gene_weights!</span><span
|
|
609
|
-
class="method-args">()</span>
|
|
610
|
-
|
|
611
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
612
|
-
|
|
613
|
-
</div>
|
|
614
|
-
|
|
615
|
-
|
|
616
|
-
<div class="method-description">
|
|
617
|
-
|
|
618
|
-
<p>Perturb existing gene weights by adding a guassian to them.</p>
|
|
619
|
-
|
|
620
|
-
|
|
621
|
-
|
|
622
|
-
|
|
623
|
-
<div class="method-source-code" id="mutate_perturb_gene_weights-21-source">
|
|
624
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 99</span>
|
|
625
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_perturb_gene_weights!</span>
|
|
626
|
-
<span class="ruby-ivar">@gperturb</span> = <span class="ruby-constant">Distribution</span><span class="ruby-operator">::</span><span class="ruby-constant">Normal</span><span class="ruby-operator">::</span><span class="ruby-identifier">rng</span>(<span class="ruby-value">0</span>, <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_perturb_gene_weights_sd</span>) <span class="ruby-keyword">if</span> <span class="ruby-ivar">@gperturb</span>.<span class="ruby-identifier">nil?</span>
|
|
627
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span>
|
|
628
|
-
<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">innov</span>, <span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
629
|
-
<span class="ruby-keyword">if</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator"><</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_perturb_gene_weights_prob</span>
|
|
630
|
-
<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">weight</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">per</span> = <span class="ruby-ivar">@gperturb</span>.()
|
|
631
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> { <span class="ruby-node">"Peturbed gene #{gene}.#{innov} by #{per}"</span> }
|
|
632
|
-
<span class="ruby-keyword">end</span>
|
|
633
|
-
}
|
|
634
|
-
<span class="ruby-keyword">end</span>
|
|
635
|
-
<span class="ruby-keyword">end</span></pre>
|
|
636
|
-
</div>
|
|
637
|
-
|
|
638
|
-
</div>
|
|
639
|
-
|
|
640
|
-
|
|
641
|
-
|
|
642
|
-
|
|
643
|
-
</div>
|
|
644
|
-
|
|
645
|
-
|
|
646
|
-
<div id="method-i-mutate_reenable_genes-21" class="method-detail ">
|
|
647
|
-
|
|
648
|
-
<div class="method-heading">
|
|
649
|
-
<span class="method-name">mutate_reenable_genes!</span><span
|
|
650
|
-
class="method-args">()</span>
|
|
651
|
-
|
|
652
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
653
|
-
|
|
654
|
-
</div>
|
|
655
|
-
|
|
656
|
-
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|
657
|
-
<div class="method-description">
|
|
658
|
-
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659
|
-
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660
|
-
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661
|
-
|
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662
|
-
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663
|
-
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|
664
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-
<div class="method-source-code" id="mutate_reenable_genes-21-source">
|
|
665
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 142</span>
|
|
666
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate_reenable_genes!</span>
|
|
667
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span>
|
|
668
|
-
<span class="ruby-keyword">if</span> <span class="ruby-identifier">rand</span> <span class="ruby-operator"><</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">mutate_gene_reenable_prob</span>
|
|
669
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"mutate_reenable_genes! for #{critter}"</span>
|
|
670
|
-
<span class="ruby-ivar">@critter_op</span>.<span class="ruby-identifier">reenable_gene!</span> <span class="ruby-identifier">critter</span>
|
|
671
|
-
<span class="ruby-keyword">end</span>
|
|
672
|
-
<span class="ruby-keyword">end</span>
|
|
673
|
-
<span class="ruby-keyword">end</span></pre>
|
|
674
|
-
</div>
|
|
675
|
-
|
|
676
|
-
</div>
|
|
677
|
-
|
|
678
|
-
|
|
679
|
-
|
|
680
|
-
|
|
681
|
-
</div>
|
|
682
|
-
|
|
683
|
-
|
|
684
|
-
<div id="method-i-prepare_fitness-21" class="method-detail ">
|
|
685
|
-
|
|
686
|
-
<div class="method-heading">
|
|
687
|
-
<span class="method-name">prepare_fitness!</span><span
|
|
688
|
-
class="method-args">()</span>
|
|
689
|
-
|
|
690
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
691
|
-
|
|
692
|
-
</div>
|
|
693
|
-
|
|
694
|
-
|
|
695
|
-
<div class="method-description">
|
|
696
|
-
|
|
697
|
-
<p>Sort species within the basis of fitness. Think of the fitness as an error
|
|
698
|
-
/ cost function. The better fit, the closer to zero the fitness parameter
|
|
699
|
-
will be.</p>
|
|
700
|
-
|
|
701
|
-
<p>If a compare block is specified in the <a href="DSL.html">DSL</a>, then
|
|
702
|
-
that function is called with the *fitness values* from critters c1 and c2.
|
|
703
|
-
The default valuation is c1.fitness <=> c2.fitness. You may elect to
|
|
704
|
-
evaluate them differently.</p>
|
|
705
|
-
|
|
706
|
-
|
|
707
|
-
|
|
708
|
-
|
|
709
|
-
<div class="method-source-code" id="prepare_fitness-21-source">
|
|
710
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 82</span>
|
|
711
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">prepare_fitness!</span>
|
|
712
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">species</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">sp</span><span class="ruby-operator">|</span>
|
|
713
|
-
<span class="ruby-identifier">sp</span>.<span class="ruby-identifier">sort!</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">c1</span>, <span class="ruby-identifier">c2</span><span class="ruby-operator">|</span>
|
|
714
|
-
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.<span class="ruby-identifier">nil?</span>
|
|
715
|
-
<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.(<span class="ruby-identifier">c1</span>.<span class="ruby-identifier">fitness</span>, <span class="ruby-identifier">c2</span>.<span class="ruby-identifier">fitness</span>)
|
|
716
|
-
<span class="ruby-keyword">else</span>
|
|
717
|
-
<span class="ruby-identifier">c1</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator"><=></span> <span class="ruby-identifier">c2</span>.<span class="ruby-identifier">fitness</span>
|
|
718
|
-
<span class="ruby-keyword">end</span>
|
|
719
|
-
}
|
|
720
|
-
<span class="ruby-keyword">end</span>
|
|
721
|
-
<span class="ruby-keyword">end</span></pre>
|
|
722
|
-
</div>
|
|
723
|
-
|
|
724
|
-
</div>
|
|
725
|
-
|
|
726
|
-
|
|
727
|
-
|
|
728
|
-
|
|
729
|
-
</div>
|
|
730
|
-
|
|
731
|
-
|
|
732
|
-
<div id="method-i-prepare_novelty-21" class="method-detail ">
|
|
733
|
-
|
|
734
|
-
<div class="method-heading">
|
|
735
|
-
<span class="method-name">prepare_novelty!</span><span
|
|
736
|
-
class="method-args">()</span>
|
|
737
|
-
|
|
738
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
739
|
-
|
|
740
|
-
</div>
|
|
741
|
-
|
|
742
|
-
|
|
743
|
-
<div class="method-description">
|
|
744
|
-
|
|
745
|
-
<p>TODO: write novelty code</p>
|
|
746
|
-
|
|
747
|
-
|
|
748
|
-
|
|
749
|
-
|
|
750
|
-
<div class="method-source-code" id="prepare_novelty-21-source">
|
|
751
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 95</span>
|
|
752
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">prepare_novelty!</span>
|
|
753
|
-
<span class="ruby-keyword">end</span></pre>
|
|
754
|
-
</div>
|
|
755
|
-
|
|
756
|
-
</div>
|
|
757
|
-
|
|
758
|
-
|
|
759
|
-
|
|
760
|
-
|
|
761
|
-
</div>
|
|
762
|
-
|
|
763
|
-
|
|
764
|
-
<div id="method-i-prepare_speciation-21" class="method-detail ">
|
|
765
|
-
|
|
766
|
-
<div class="method-heading">
|
|
767
|
-
<span class="method-name">prepare_speciation!</span><span
|
|
768
|
-
class="method-args">()</span>
|
|
769
|
-
|
|
770
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
771
|
-
|
|
772
|
-
</div>
|
|
773
|
-
|
|
774
|
-
|
|
775
|
-
<div class="method-description">
|
|
776
|
-
|
|
777
|
-
<p>Here we specify evolutionary operators.</p>
|
|
778
|
-
|
|
779
|
-
|
|
780
|
-
|
|
781
|
-
|
|
782
|
-
<div class="method-source-code" id="prepare_speciation-21-source">
|
|
783
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 69</span>
|
|
784
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">prepare_speciation!</span>
|
|
785
|
-
<span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">speciate!</span>
|
|
786
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-string">"SPECIES:"</span>
|
|
787
|
-
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">dpp</span> <span class="ruby-ivar">@npop</span>.<span class="ruby-identifier">species</span>
|
|
788
|
-
<span class="ruby-keyword">end</span></pre>
|
|
789
|
-
</div>
|
|
790
|
-
|
|
791
|
-
</div>
|
|
792
|
-
|
|
793
|
-
|
|
794
|
-
|
|
795
|
-
|
|
796
|
-
</div>
|
|
797
|
-
|
|
798
|
-
|
|
799
|
-
<div id="method-i-sex" class="method-detail ">
|
|
800
|
-
|
|
801
|
-
<div class="method-heading">
|
|
802
|
-
<span class="method-name">sex</span><span
|
|
803
|
-
class="method-args">(crit1, crit2)</span>
|
|
804
|
-
|
|
805
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
806
|
-
|
|
807
|
-
</div>
|
|
808
|
-
|
|
809
|
-
|
|
810
|
-
<div class="method-description">
|
|
811
|
-
|
|
812
|
-
<p>Mate the given critters and return a baby. This is rather involved, and
|
|
813
|
-
relies heavily on the Innovation Numbers.</p>
|
|
814
|
-
|
|
815
|
-
<p>Some definitions:</p>
|
|
816
|
-
|
|
817
|
-
<pre>Matching Gene
|
|
818
|
-
2 genes with matching innovation numbers.
|
|
819
|
-
|
|
820
|
-
Disjoint Gene
|
|
821
|
-
A gene in one has an innovation number in the range of innovation numbers
|
|
822
|
-
of the other.
|
|
823
|
-
|
|
824
|
-
Excess Gene
|
|
825
|
-
Gene in one critter that has an innovation number outside of the range
|
|
826
|
-
of innovation numbers of the other.
|
|
827
|
-
|
|
828
|
-
Neurons
|
|
829
|
-
Distinct Neurons from both crit1 and crit2 must be present in
|
|
830
|
-
the baby.</pre>
|
|
831
|
-
|
|
832
|
-
<p>Excess and Disjoint genes are always included from the more fit parent.
|
|
833
|
-
Matching genes are randomly chosen. For now, we make it 50/50.</p>
|
|
834
|
-
|
|
835
|
-
|
|
836
|
-
|
|
837
|
-
|
|
838
|
-
<div class="method-source-code" id="sex-source">
|
|
839
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/evolver.rb, line 221</span>
|
|
840
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">sex</span>(<span class="ruby-identifier">crit1</span>, <span class="ruby-identifier">crit2</span>)
|
|
841
|
-
<span class="ruby-constant">Critter</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@npop</span>, <span class="ruby-keyword">true</span>) <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">baby</span><span class="ruby-operator">|</span>
|
|
842
|
-
<span class="ruby-identifier">fitcrit</span> = <span class="ruby-keyword">if</span> <span class="ruby-identifier">crit1</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator">></span> <span class="ruby-identifier">crit2</span>.<span class="ruby-identifier">fitness</span>
|
|
843
|
-
<span class="ruby-identifier">crit1</span>
|
|
844
|
-
<span class="ruby-keyword">elsif</span> <span class="ruby-identifier">crit2</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator">></span> <span class="ruby-identifier">crit1</span>.<span class="ruby-identifier">fitness</span>
|
|
845
|
-
<span class="ruby-identifier">crit2</span>
|
|
846
|
-
<span class="ruby-keyword">else</span>
|
|
847
|
-
(<span class="ruby-identifier">rand</span>(<span class="ruby-value">2</span>) <span class="ruby-operator">==</span> <span class="ruby-value">1</span>) <span class="ruby-operator">?</span> <span class="ruby-identifier">crit1</span> <span class="ruby-operator">:</span> <span class="ruby-identifier">crit2</span>
|
|
848
|
-
<span class="ruby-keyword">end</span>
|
|
849
|
-
<span class="ruby-identifier">a</span> = <span class="ruby-identifier">crit1</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>.<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">to_set</span>
|
|
850
|
-
<span class="ruby-identifier">b</span> = <span class="ruby-identifier">crit2</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>.<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">to_set</span>
|
|
851
|
-
<span class="ruby-identifier">disjoint</span> = (<span class="ruby-identifier">a</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">b</span>) <span class="ruby-operator">+</span> (<span class="ruby-identifier">b</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">a</span>)
|
|
852
|
-
<span class="ruby-identifier">joint</span> = (<span class="ruby-identifier">a</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">b</span>) <span class="ruby-operator">-</span> <span class="ruby-identifier">disjoint</span>
|
|
853
|
-
<span class="ruby-identifier">baby</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">neucleate</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">gtype</span><span class="ruby-operator">|</span>
|
|
854
|
-
<span class="ruby-identifier">joint</span>.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">innov</span><span class="ruby-operator">|</span>
|
|
855
|
-
<span class="ruby-identifier">g1</span> = <span class="ruby-identifier">crit1</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>[<span class="ruby-identifier">innov</span>]
|
|
856
|
-
<span class="ruby-identifier">g2</span> = <span class="ruby-identifier">crit2</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>[<span class="ruby-identifier">innov</span>]
|
|
857
|
-
<span class="ruby-constant">Critter</span><span class="ruby-operator">::</span><span class="ruby-constant">Genotype</span><span class="ruby-operator">::</span><span class="ruby-constant">Gene</span>[<span class="ruby-identifier">gtype</span>,
|
|
858
|
-
<span class="ruby-identifier">g1</span>.<span class="ruby-identifier">in_neuron</span>, <span class="ruby-identifier">g1</span>.<span class="ruby-identifier">out_neuron</span>,
|
|
859
|
-
(<span class="ruby-identifier">rand</span>(<span class="ruby-value">2</span>) <span class="ruby-operator">==</span> <span class="ruby-value">1</span>) <span class="ruby-operator">?</span> <span class="ruby-identifier">g1</span>.<span class="ruby-identifier">weight</span> <span class="ruby-operator">:</span> <span class="ruby-identifier">g2</span>.<span class="ruby-identifier">weight</span>,
|
|
860
|
-
<span class="ruby-identifier">innov</span>]
|
|
861
|
-
} <span class="ruby-operator">+</span> <span class="ruby-identifier">disjoint</span>.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">innov</span><span class="ruby-operator">|</span>
|
|
862
|
-
<span class="ruby-identifier">fitcrit</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>[<span class="ruby-identifier">innov</span>].<span class="ruby-identifier">clone</span> <span class="ruby-keyword">unless</span> <span class="ruby-identifier">fitcrit</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">genes</span>[<span class="ruby-identifier">innov</span>].<span class="ruby-identifier">nil?</span>
|
|
863
|
-
}.<span class="ruby-identifier">reject</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span> <span class="ruby-identifier">i</span>.<span class="ruby-identifier">nil?</span> }
|
|
864
|
-
}
|
|
865
|
-
<span class="ruby-identifier">baby</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">innervate!</span> <span class="ruby-identifier">crit1</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">neurons</span>, <span class="ruby-identifier">crit2</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">neurons</span>
|
|
866
|
-
<span class="ruby-identifier">baby</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">prune!</span>
|
|
867
|
-
<span class="ruby-identifier">baby</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">wire!</span>
|
|
868
|
-
<span class="ruby-keyword">end</span>
|
|
869
|
-
<span class="ruby-keyword">end</span></pre>
|
|
870
|
-
</div>
|
|
871
|
-
|
|
872
|
-
</div>
|
|
873
|
-
|
|
874
|
-
|
|
875
|
-
|
|
876
|
-
|
|
877
|
-
</div>
|
|
878
|
-
|
|
879
|
-
|
|
880
|
-
</section>
|
|
881
|
-
|
|
882
|
-
</section>
|
|
883
|
-
</main>
|
|
884
|
-
|
|
885
|
-
|
|
886
|
-
<footer id="validator-badges" role="contentinfo">
|
|
887
|
-
<p><a href="http://validator.w3.org/check/referer">Validate</a>
|
|
888
|
-
<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
|
|
889
|
-
<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
|
|
890
|
-
</footer>
|
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891
|
-
|