endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,172 @@
1
+ - model: endoreg_db.Examination
2
+ fields:
3
+ name: "colonoscopy"
4
+ name_de: "Koloskopie"
5
+ name_en: "Colonoscopy"
6
+ examination_types: ["endoscopy"]
7
+ indications:
8
+ - colonoscopy_generic
9
+ - colonoscopy_screening
10
+ - colonoscopy_lesion_removal_small
11
+ - colonoscopy_lesion_removal_large
12
+ - colonoscopy_lesion_removal_emr
13
+ - colonoscopy_diagnostic_acute_symptomatic
14
+ findings:
15
+ # baseline
16
+ - examination_setting
17
+ - bowel_preparation_lc
18
+ - bowel_preparation_tc
19
+ - bowel_preparation_rc
20
+ - bowel_preparation_simplified
21
+ - colonoscopy_deepest_viewed_location
22
+ # observations
23
+ - complication_generic
24
+ - colon_polyp
25
+ - colon_post_intervention_wound
26
+ - colon_tumor_mass
27
+ - colon_inflammation
28
+ - colon_erosion
29
+ - colon_ulcer
30
+ - colon_scar
31
+ - anal_fissure
32
+ - anal_hemorrhoids
33
+ # hidden
34
+ - rectum_anus
35
+ - rectum
36
+ - sigmoid_colon
37
+ - descending_colon
38
+ - left_flexure
39
+ - transverse_colon
40
+ - right_flexure
41
+ - ascending_colon
42
+ - cecum
43
+ - appendiceal_orifice
44
+ - ileocecal_valve
45
+ - terminal_ileum
46
+
47
+ - model: endoreg_db.Examination
48
+ fields:
49
+ name: "gastroscopy"
50
+ name_de: "Gastroskopie"
51
+ name_en: "Gastroscopy"
52
+ examination_types: ["endoscopy"]
53
+ indications:
54
+ - gastroscopy_generic
55
+ # - gastroscopy_diagnostic_acute_symptomatic
56
+ # - gastroscopy_surveillance_barretts_esophagus
57
+ # - gastroscopy_surveillance_gastric_atrophy
58
+ - gastroscopy_lesion_removal_small
59
+ - gastroscopy_lesion_removal_large
60
+ # - gastroscopy_lesion_removal_emr
61
+ findings:
62
+ # baseline
63
+ - sedation_endoscopy
64
+ - gastroscopy_esophagus_mucosa
65
+ - gastroscopy_gastroesophageal_junction
66
+ - gastroscopy_fundus_mucosa
67
+ - gastroscopy_corpus_mucosa
68
+ - gastroscopy_antrum_mucosa
69
+ - gastroscopy_pylorus
70
+ - gastroscopy_angulus_flexure_mucosa
71
+ - gastroscopy_duodenum_bulbus_mucosa
72
+ - gastroscopy_duodenum_mucosa
73
+ # observations
74
+ - gastroscopy_polyp
75
+ - gastroscopy_ulcer
76
+ - gastroscopy_erythema
77
+ - gastroscopy_subepithelial_tumor
78
+ - gastroscopy_stenosis
79
+ - gastroscopy_varices_esophageal
80
+ - gastroscopy_varices_gastric
81
+ - gastroscopy_varices_duodenal
82
+ - gastroscopy_scar
83
+ - gastroscopy_bleeding
84
+ - gastroscopy_stenosis
85
+ - gastroscopy_ectopic_gastric_mucosa
86
+ - gastroscopy_diverticulum_esophagus
87
+ - gastroscopy_diverticulum_duodenum
88
+ - gastroscopy_ectopic_pancreatic_tissue
89
+ - gastroscopy_obstruction_generic
90
+
91
+ # endosonography_upper_gi
92
+ - model: endoreg_db.Examination
93
+ fields:
94
+ name: "endosonography_upper_gi"
95
+ name_de: "Endosonographie oberer GI-Trakt"
96
+ name_en: "Endosonography Upper GI Tract"
97
+ examination_types: ["endoscopy"]
98
+ indications:
99
+ - gastroscopy_baseline
100
+ - gastroscopy_diagnostic_acute_symptomatic
101
+ - gastroscopy_acute_bleeding
102
+ - gastroscopy_percutane_enterostomy
103
+ - gastroscopy_varicosis_therapeutic_esophagus
104
+ - gastroscopy_varicosis_therapeutic_stomach
105
+ - gastroscopy_therapeutic_varicosis_intestine
106
+ - gastroscopy_lesion_removal_small
107
+ - gastroscopy_lesion_removal_large
108
+ - gastroscopy_obstruction_generic
109
+
110
+ - model: endoreg_db.Examination
111
+ fields:
112
+ name: "endosonography_upper_gi"
113
+ name_de: "Endosonographie unterer GI-Trakt"
114
+ name_en: "Endosonography Lower GI Tract"
115
+ examination_types: ["endoscopy"]
116
+ indications:
117
+ - endosonography_upper_gi_non_invasive
118
+ - endosonography_upper_gi_invasive
119
+
120
+ - model: endoreg_db.Examination
121
+ fields:
122
+ name: "endosonography_lower_gi"
123
+ name_de: "Endosonographie unterer GI-Trakt"
124
+ name_en: "Endosonography Lower GI Tract"
125
+ examination_types: ["endoscopy"]
126
+ indications:
127
+ - endosonography_lower_gi_non_invasive
128
+ - endosonography_lower_gi_invasive
129
+
130
+ # ERCP
131
+ - model: endoreg_db.Examination
132
+ fields:
133
+ name: "ercp"
134
+ name_de: "ERCP"
135
+ name_en: "ERCP"
136
+ examination_types: ["endoscopy"]
137
+ indications:
138
+ - erc
139
+ - erc_no_est
140
+ - ercp
141
+ - ercp_no_est
142
+ - ercp_therapeutic_stenosis
143
+
144
+ # small bowel endoscopy
145
+ - model: endoreg_db.Examination
146
+ fields:
147
+ name: "small_bowel_endoscopy"
148
+ name_de: "Dünndarmendoskopie"
149
+ name_en: "Small Bowel Endoscopy"
150
+ examination_types: ["endoscopy"]
151
+ indications:
152
+ - small_bowel_endoscopy_generic
153
+
154
+ # capsule endoscopy
155
+ - model: endoreg_db.Examination
156
+ fields:
157
+ name: "capsule_endoscopy"
158
+ name_de: "Kapselendoskopie"
159
+ name_en: "Capsule Endoscopy"
160
+ examination_types: ["endoscopy"]
161
+ indications:
162
+ - capsule_endoscopy_generic
163
+
164
+ - model: endoreg_db.Examination
165
+ fields:
166
+ name: "percutaneous_transhepatic_biliary_intervention"
167
+ name_de: "Perkutane transhepatische Gallengangdrainage"
168
+ name_en: "Percutaneous Transhepatic Biliary Drainage"
169
+ examination_types: ["endoscopy", "sonography", "xray"]
170
+ indications:
171
+ - percutaneous_transhepatic_cholangiography
172
+ - percutaneous_transhepatic_biliary_drainage
@@ -0,0 +1,48 @@
1
+ - model: report.ExaminationTime
2
+ fields:
3
+ name: "colonoscopy-total-time"
4
+ name_de: "Koloskopie Zeiten"
5
+ name_en: "Colonoscopy Times"
6
+ time_types: [
7
+ "colonoscopy-time"
8
+ ]
9
+
10
+ # withdrawal-time
11
+ - model: report.ExaminationTime
12
+ fields:
13
+ name: "withdrawal-time"
14
+ name_de: "Withdrawal Time"
15
+ name_en: "Withdrawal Time"
16
+ time_types: [
17
+ "colonoscopy-time"
18
+ ]
19
+
20
+ # cecum-time
21
+ - model: report.ExaminationTime
22
+ fields:
23
+ name: "cecum-time"
24
+ name_de: "Zökum Zeit"
25
+ name_en: "Cecum Time"
26
+ time_types: [
27
+ "colonoscopy-time"
28
+ ]
29
+
30
+ # intubation-time
31
+ - model: report.ExaminationTime
32
+ fields:
33
+ name: "intubation-time"
34
+ name_de: "Intubationszeit"
35
+ name_en: "Intubation Time"
36
+ time_types: [
37
+ "colonoscopy-time"
38
+ ]
39
+
40
+ # colonoscopy-intervention-time
41
+ - model: report.ExaminationTimeType
42
+ fields:
43
+ name: "colonoscopy-intervention-time"
44
+ name_de: "Interventionszeit"
45
+ name_en: "Intervention Time"
46
+ time_types: [
47
+ "colonoscopy-time"
48
+ ]
@@ -0,0 +1,5 @@
1
+ - model:
2
+ fields:
3
+ name: "colonoscopy-time"
4
+ name_de: "Koloskopie-Zeit"
5
+ name_en: "Colonoscopy Time"
@@ -0,0 +1,17 @@
1
+ - model: report.ExaminationType
2
+ fields:
3
+ name: "endoscopy"
4
+ name_de: "Endoskopie"
5
+ name_en: "Endoscopy"
6
+
7
+ - model: report.ExaminationType
8
+ fields:
9
+ name: "sonography"
10
+ name_de: "Sonographie"
11
+ name_en: "Sonography"
12
+
13
+ - model: report.ExaminationType
14
+ fields:
15
+ name: "xray"
16
+ name_de: "Röntgen"
17
+ name_en: "X-ray"
@@ -0,0 +1,359 @@
1
+ # Colonoscopy
2
+ ## Generic
3
+ - model: endoreg_db.examination_indication
4
+ fields:
5
+ name: "colonoscopy_generic"
6
+ name_de: "Koloskopie"
7
+ name_en: "Colonoscopy"
8
+ description: "Colonoscopy without further specification"
9
+
10
+ ## Colonoscopy elective
11
+ - model: endoreg_db.examination_indication
12
+ fields:
13
+ name: "colonoscopy_screening"
14
+ name_de: "Koloskopie (Screening)"
15
+ name_en: "Colonoscopy (Screening)"
16
+ description: "Colonoscopy for screening purposes"
17
+ expected_interventions: # Many2Many to finding intervention
18
+ [
19
+ "endoscopy_cold_snare_resection_generic",
20
+ "endoscopy_injection_liftup",
21
+ "endoscopy_biopsy_grasper_generic",
22
+ "endoscopy_hemoclip_generic",
23
+ ]
24
+
25
+ - model: endoreg_db.examination_indication
26
+ fields:
27
+ name: "colonoscopy_lesion_removal_small"
28
+ name_de: "Koloskopie (Läsionsentfernung, klein (< 10 mm), elektiv)"
29
+ name_en: "Colonoscopy (Lesion removal, small (< 10 mm), elective)"
30
+ description: "Elective colonoscopy for removal of small lesions (< 10 mm)"
31
+ expected_interventions:
32
+ [
33
+ "endoscopy_cold_snare_resection_generic",
34
+ "endoscopy_diathermic_snare_resection_generic",
35
+ "endoscopy_injection_liftup",
36
+ "endoscopy_injection_vasoactive",
37
+ "endoscopy_biopsy_grasper_generic",
38
+ "endoscopy_hemoclip_generic",
39
+ ]
40
+
41
+ # colonoscopy_lesion_removal_emr
42
+ - model: endoreg_db.examination_indication
43
+ fields:
44
+ name: "colonoscopy_lesion_removal_emr"
45
+ name_de: "Koloskopie (Läsionsentfernung, EMR, elektiv)"
46
+ name_en: "Colonoscopy (Lesion removal, EMR, elective)"
47
+ description: "Elective colonoscopy for removal of lesions using EMR"
48
+ expected_interventions:
49
+ [
50
+ "endoscopy_emr_generic",
51
+ "endoscopy_injection_vasoactive",
52
+ "endoscopy_injection_liftup",
53
+ "endoscopy_hemoclip_generic",
54
+ "endoscopy_over_the_scope_clip_generic",
55
+ ]
56
+
57
+ - model: endoreg_db.examination_indication
58
+ fields:
59
+ name: "colonoscopy_lesion_removal_large"
60
+ name_de: "Koloskopie (Läsionsentfernung, groß (≥ 10 mm), elektiv)"
61
+ name_en: "Colonoscopy (Lesion removal, large (≥ 10 mm), elective)"
62
+ description: "Elective colonoscopy for removal of large lesions (≥ 10 mm)"
63
+ expected_interventions:
64
+ [
65
+ "endoscopy_injection_vasoactive",
66
+ "endoscopy_injection_liftup",
67
+ "endoscopy_hemoclip_generic",
68
+ "endoscopy_over_the_scope_clip_generic",
69
+ "endoscopy_emr_generic",
70
+ "endoscopy_esd_generic",
71
+ "endoscopy_eftr_generic",
72
+ ]
73
+
74
+ ## Colonoscopy Acute
75
+ - model: endoreg_db.examination_indication
76
+ fields:
77
+ name: "colonoscopy_diagnostic_acute_symptomatic"
78
+ name_de: "Koloskopie (Diagnostik, akut-symptomatisch)"
79
+ name_en: "Colonoscopy (Diagnostic, Acute Symptomatic)"
80
+ description: "Colonoscopy for diagnostic purposes in acute symptomatic patients"
81
+ expected_interventions:
82
+ ["endoscopy_hemoclip_generic", "endoscopy_injection_vasoactive"]
83
+
84
+ # Gastroscopy
85
+ - model: endoreg_db.examination_indication
86
+ fields:
87
+ name: "gastroscopy_generic"
88
+ name_de: "Gastroskopie"
89
+ name_en: "Gastroscopy"
90
+ description: "Gastroscopy without further specification"
91
+ expected_interventions: # Many2Many to finding intervention
92
+ [
93
+ "endoscopy_cold_snare_resection_generic",
94
+ "endoscopy_injection_liftup",
95
+ "endoscopy_biopsy_grasper_generic",
96
+ "endoscopy_hemoclip_generic",
97
+ "endoscopy_over_the_scope_clip_generic",
98
+ ]
99
+
100
+ - model: endoreg_db.examination_indication
101
+ fields:
102
+ name: "gastroscopy_baseline"
103
+ name_de: "Gastroskopie (Basis)"
104
+ name_en: "Gastroscopy (Baseline)"
105
+ description: "Baseline gastroscopy"
106
+ expected_interventions: ["endoscopy_biopsy_grasper_generic"]
107
+
108
+ ## Gastroscopy Acute
109
+ - model: endoreg_db.examination_indication
110
+ fields:
111
+ name: "gastroscopy_diagnostic_acute_symptomatic"
112
+ name_de: "Gastroskopie (Diagnostik, akut-symptomatisch)"
113
+ name_en: "Gastroscopy (Diagnostic, Acute Symptomatic)"
114
+ description: "Gastroscopy for diagnostic purposes in acute symptomatic patients"
115
+ expected_interventions: [
116
+ "endoscopy_biopsy_grasper_generic", # default
117
+ ]
118
+
119
+ - model: endoreg_db.examination_indication
120
+ fields:
121
+ name: "gastroscopy_acute_bleeding"
122
+ name_de: "Gastroskopie (akute Blutung)"
123
+ name_en: "Gastroscopy (acute bleeding)"
124
+ description: "Gastroscopy for acute bleeding"
125
+ expected_interventions: [
126
+ "endoscopy_injection_vasoactive",
127
+ "endoscopy_hemoclip_generic", # default
128
+ "endoscopy_over_the_scope_clip_generic",
129
+ "endoscopy_rubber_band_ligation_generic",
130
+ "endoscopy_sclerotherapy_generic",
131
+ "endoscopy_ablation_argon_plasma_coagulation",
132
+ ]
133
+
134
+ ## Gastroscopy Elective
135
+ - model: endoreg_db.examination_indication
136
+ fields:
137
+ name: "gastroscopy_diagnostic_elective"
138
+ name_de: "Gastroskopie (Diagnostik, elektiv)"
139
+ name_en: "Gastroscopy (Diagnostic, Elective)"
140
+ description: "Gastroscopy for diagnostic purposes in elective patients"
141
+ expected_interventions: ["endoscopy_biopsy_grasper_generic"]
142
+
143
+ - model: endoreg_db.examination_indication
144
+ fields:
145
+ name: "gastroscopy_percutane_enterostomy"
146
+ name_de: "Gastroskopie (perkutane Enterostomie)"
147
+ name_en: "Gastroscopy (percutaneous enterostomy)"
148
+ description: "Gastroscopy for percutaneous enterostomy"
149
+ expected_interventions:
150
+ [
151
+ "egd_percutaneous_gastroenterostomy",
152
+ "egd_percutaneous_jejunostomy",
153
+ "endoscopy_biopsy_grasper_generic",
154
+ "endoscopy_hemoclip_generic",
155
+ ]
156
+
157
+ - model: endoreg_db.examination_indication
158
+ fields:
159
+ name: "gastroscopy_varicosis_therapeutic_esophagus"
160
+ name_de: "Gastroskopie (Therapie, Varikosis Ösophagus, elektiv)"
161
+ name_en: "Gastroscopy (Therapeutic, Varicosis Esophagus, elective)"
162
+ description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the esophagus"
163
+ expected_interventions:
164
+ [
165
+ "endoscopy_rubber_band_ligation_generic",
166
+ "endoscopy_sclerotherapy_generic",
167
+ "endoscopy_injection_vasoactive",
168
+ "endoscopy_hemoclip_generic",
169
+ ]
170
+
171
+ - model: endoreg_db.examination_indication
172
+ fields:
173
+ name: "gastroscopy_varicosis_therapeutic_stomach"
174
+ name_de: "Gastroskopie (Therapie, Varikosis Magen, elektiv)"
175
+ name_en: "Gastroscopy (Therapeutic, Varicosis Stomach, elective)"
176
+ description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the stomach"
177
+ expected_interventions:
178
+ [
179
+ "endoscopy_rubber_band_ligation_generic",
180
+ "endoscopy_hemoclip_generic",
181
+ "endoscopy_sclerotherapy_generic",
182
+ "endoscopy_injection_vasoactive",
183
+ ]
184
+
185
+ - model: endoreg_db.examination_indication
186
+ fields:
187
+ name: "gastroscopy_therapeutic_varicosis_intestine"
188
+ name_de: "Gastroskopie (Therapie, Varikosis Darm, elektiv)"
189
+ name_en: "Gastroscopy (Therapeutic, Varicosis Intestine, elective)"
190
+ description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the intestine"
191
+ expected_interventions:
192
+ [
193
+ "endoscopy_rubber_band_ligation_generic",
194
+ "endoscopy_hemoclip_generic",
195
+ "endoscopy_sclerotherapy_generic",
196
+ "endoscopy_injection_vasoactive",
197
+ ]
198
+
199
+ - model: endoreg_db.examination_indication
200
+ fields:
201
+ name: "gastroscopy_lesion_removal_small"
202
+ name_de: "Gastroskopie (Läsionsentfernung, klein (< 10 mm), elektiv)"
203
+ name_en: "Gastroscopy (Lesion removal, small (< 10 mm), elective)"
204
+ description: "Elective gastroscopy for removal of small lesions (< 10 mm)"
205
+ expected_interventions:
206
+ [
207
+ "endoscopy_cold_snare_resection_generic",
208
+ "endoscopy_diathermic_snare_resection_generic",
209
+ "endoscopy_biopsy_foreceps_resection_generic",
210
+ "endoscopy_injection_vasoactive",
211
+ "endoscopy_injection_liftup",
212
+ "endoscopy_hemoclip_generic",
213
+ "endoscopy_over_the_scope_clip_generic",
214
+ ]
215
+
216
+ - model: endoreg_db.examination_indication
217
+ fields:
218
+ name: "gastroscopy_lesion_removal_large"
219
+ name_de: "Gastroskopie (Läsionsentfernung, groß (≥ 10 mm), elektiv)"
220
+ name_en: "Gastroscopy (Lesion removal, large (≥ 10 mm), elective)"
221
+ description: "Elective gastroscopy for removal of large lesions (≥ 10 mm)"
222
+ expected_interventions:
223
+ [
224
+ "endoscopy_injection_vasoactive",
225
+ "endoscopy_injection_liftup",
226
+ "endoscopy_hemoclip_generic",
227
+ "endoscopy_over_the_scope_clip_generic",
228
+ "endoscopy_emr_generic",
229
+ "endoscopy_esd_generic",
230
+ "endoscopy_eftr_generic",
231
+ "egd_poem",
232
+ ]
233
+
234
+ - model: endoreg_db.examination_indication
235
+ fields:
236
+ name: "gastroscopy_obstruction_generic"
237
+ name_de: "Gastroskopie (Obstruktion / Dysphagie, generisch, elektiv)"
238
+ name_en: "Gastroscopy (Obstruction / Dysphagia, generic, elective)"
239
+ description: "Elective gastroscopy for patients with obstruction / dysphagia"
240
+ expected_interventions:
241
+ [
242
+ "egd_stepwise_biopsy",
243
+ "endoscopy_biopsy_grasper_generic",
244
+ "endoscopy_hemoclip_generic",
245
+ "egd_esophagus_injection_botox",
246
+ "endoscopy_dilation_bougie",
247
+ "endoscopy_dilation_balloon",
248
+ "endoscopy_stent_generic",
249
+ "endoscopy_ablation_radiofrequency",
250
+ "endoscopy_ablation_cryotherapy",
251
+ "endoscopy_ablation_laser",
252
+ ]
253
+
254
+ # Endosonography
255
+ - model: endoreg_db.examination_indication
256
+ fields:
257
+ name: "endosonography_upper_gi_non_invasive"
258
+ name_de: "Endosonographie oberer GI-Trakt"
259
+ name_en: "Endosonography Upper GI Tract"
260
+ description: "Endosonography of the upper GI tract without planned intervention"
261
+ expected_interventions: []
262
+
263
+ - model: endoreg_db.examination_indication
264
+ fields:
265
+ name: "endosonography_upper_gi_invasive"
266
+ name_de: "Endosonographie oberer GI-Trakt (invasiv)"
267
+ name_en: "Endosonography Upper GI Tract (invasive)"
268
+ description: "Invasive endosonography of the upper GI tract"
269
+ expected_interventions: [] #TODO
270
+
271
+ - model: endoreg_db.examination_indication
272
+ fields:
273
+ name: "endosonography_lower_gi_non_invasive"
274
+ name_de: "Endosonographie unterer GI-Trakt"
275
+ name_en: "Endosonography Lower GI Tract"
276
+ description: "Endosonography of the lower GI tract without planned intervention"
277
+ expected_interventions: [] #TODO
278
+
279
+ - model: endoreg_db.examination_indication
280
+ fields:
281
+ name: "endosonography_lower_gi_invasive"
282
+ name_de: "Endosonographie unterer GI-Trakt (invasiv)"
283
+ name_en: "Endosonography Lower GI Tract (invasive)"
284
+ description: "Invasive endosonography of the lower GI tract"
285
+ expected_interventions: [] #TODO
286
+
287
+ # PTC(D)
288
+ - model: endoreg_db.examination_indication
289
+ fields:
290
+ name: "percutaneous_transhepatic_cholangiography"
291
+ name_de: "Perkutane transhepatische Cholangiographie"
292
+ name_en: "Percutaneous Transhepatic Cholangiography"
293
+ description: "Percutaneous transhepatic cholangiography without further specification"
294
+ expected_interventions: [] #TODO
295
+
296
+ - model: endoreg_db.examination_indication
297
+ fields:
298
+ name: "percutaneous_transhepatic_biliary_drainage"
299
+ name_de: "Perkutane transhepatische Gallengangdrainage"
300
+ name_en: "Percutaneous Transhepatic Biliary Drainage"
301
+ description: "Percutaneous transhepatic biliary drainage without further specification"
302
+ expected_interventions: [] #TODO
303
+
304
+ # ERCP
305
+ - model: endoreg_db.examination_indication
306
+ fields:
307
+ name: "erc"
308
+ name_de: "Endoskopische retrograde Cholangiographie"
309
+ name_en: "Endoscopic Retrograde Cholangiography"
310
+ description: "ERC without further specification"
311
+ expected_interventions: [] #TODO
312
+
313
+ - model: endoreg_db.examination_indication
314
+ fields:
315
+ name: "erc_no_est"
316
+ name_de: "ERC (ohne EST)"
317
+ name_en: "ERC (without EST)"
318
+ description: "ERC without endoscopic sphincterotomy"
319
+ expected_interventions: [] #TODO
320
+
321
+ - model: endoreg_db.examination_indication
322
+ fields:
323
+ name: "ercp"
324
+ name_de: "Endoskopische retrograde Cholangiopankreatikographie"
325
+ name_en: "Endoscopic Retrograde Cholangiopancreatography"
326
+ description: "ERCP without further specification"
327
+ expected_interventions: [] #TODO
328
+
329
+ - model: endoreg_db.examination_indication
330
+ fields:
331
+ name: "ercp_no_est"
332
+ name_de: "ERCP (ohne EST)"
333
+ name_en: "ERCP (without EST)"
334
+ description: "ERCP without endoscopic sphincterotomy"
335
+ expected_interventions: [] #TODO
336
+
337
+ - model: endoreg_db.examination_indication
338
+ fields:
339
+ name: "ercp_therapeutic_stenosis"
340
+ name_de: "ERC(P) (Therapie, Stenose)"
341
+ name_en: "ERC(P) (Therapeutic, Stenosis)"
342
+ description: "ERC(P) for therapeutic purposes in patients with stenosis"
343
+ expected_interventions: [] #TODO
344
+
345
+ - model: endoreg_db.examination_indication
346
+ fields:
347
+ name: "small_bowel_endoscopy_generic"
348
+ name_de: "Dünndarmendoskopie"
349
+ name_en: "Small Bowel Endoscopy"
350
+ description: "Small bowel endoscopy without further specification"
351
+ expected_interventions: [] #TODO
352
+
353
+ - model: endoreg_db.examination_indication
354
+ fields:
355
+ name: "capsule_endoscopy_generic"
356
+ name_de: "Kapselendoskopie"
357
+ name_en: "Capsule Endoscopy"
358
+ description: "Capsule endoscopy without further specification"
359
+ expected_interventions: [] #TODO
@@ -0,0 +1,90 @@
1
+ - model: endoreg_db.examination_indication_classification
2
+ fields:
3
+ name: endoscopy_colonoscopy
4
+ name_de: Koloskopie (unspezifisch)
5
+ name_en: Colonoscopy (unspecific)
6
+ description: Colonoscopy without further specification
7
+
8
+ - model: endoreg_db.examination_indication_classification
9
+ fields:
10
+ name: endoscopy_colonoscopy_acute
11
+ name_de: Koloskopie (akut)
12
+ name_en: Colonoscopy (acute)
13
+ description: Colonoscopy for acute indications
14
+
15
+ - model: endoreg_db.examination_indication_classification
16
+ fields:
17
+ name: endoscopy_colonoscopy_elective
18
+ name_de: Koloskopie (elektiv)
19
+ name_en: Colonoscopy (elective)
20
+ description: Colonoscopy for elective indications
21
+
22
+ - model: endoreg_db.examination_indication_classification
23
+ fields:
24
+ name: endoscopy_gastroscopy
25
+ name_de: Gastroskopie
26
+ name_en: Gastroscopy
27
+ description: Gastroscopy without further specification
28
+
29
+ - model: endoreg_db.examination_indication_classification
30
+ fields:
31
+ name: endoscopy_gastroscopy_acute
32
+ name_de: Gastroskopie (akut)
33
+ name_en: Gastroscopy (acute)
34
+ description: Gastroscopy for acute indications
35
+
36
+ - model: endoreg_db.examination_indication_classification
37
+ fields:
38
+ name: endoscopy_gastroscopy_elective
39
+ name_de: Gastroskopie (elektiv)
40
+ name_en: Gastroscopy (elective)
41
+ description: Gastroscopy for elective indications
42
+
43
+ - model: endoreg_db.examination_indication_classification
44
+ fields:
45
+ name: small_bowel_endoscopy
46
+ name_de: "Dünndarmendoskopie"
47
+ name_en: Small Bowel Endoscopy
48
+ description: Small Bowel Endoscopy without further specification
49
+
50
+ - model: endoreg_db.examination_indication_classification
51
+ fields:
52
+ name: capsule_endoscopy
53
+ name_de: Kapselendoskopie
54
+ name_en: Capsule Endoscopy
55
+ description: Capsule Endoscopy without further specification
56
+
57
+ - model: endoreg_db.examination_indication_classification
58
+ fields:
59
+ name: endosonography_lower_gi
60
+ name_de: Endosonographie unterer GI-Trakt
61
+ name_en: Endosonography Lower GI Tract
62
+ description: Endosonography Lower GI Tract without further specification
63
+
64
+ - model: endoreg_db.examination_indication_classification
65
+ fields:
66
+ name: endosonography_upper_gi
67
+ name_de: Endosonographie oberer GI-Trakt
68
+ name_en: Endosonography Upper GI Tract
69
+ description: Endosonography Upper GI Tract without further specification
70
+
71
+ - model: endoreg_db.examination_indication_classification
72
+ fields:
73
+ name: endoscopy_ercp
74
+ name_de: Endoskopische retrograde Cholangiopankreatikographie
75
+ name_en: Endoscopic Retrograde Cholangiopancreatography
76
+ description: Endoscopic Retrograde Cholangiopancreatography without further specification
77
+
78
+ - model: endoreg_db.examination_indication_classification
79
+ fields:
80
+ name: sonography_guided
81
+ name_de: Sonographisch gesteuert
82
+ name_en: Sonography guided
83
+ description: Sonography guided procedures
84
+
85
+ - model: endoreg_db.examination_indication_classification
86
+ fields:
87
+ name: xray_guided
88
+ name_de: Röntgen gesteuert
89
+ name_en: X-ray guided
90
+ description: X-ray guided procedures