endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,28 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import PortalUserInfo
7
+
8
+
9
+ class ProfessionManager(models.Manager):
10
+ def get_by_natural_key(self, name):
11
+ return self.get(name=name)
12
+
13
+
14
+ class Profession(models.Model):
15
+ objects = ProfessionManager()
16
+ name = models.CharField(max_length=100)
17
+ description = models.TextField(blank=True, null=True)
18
+
19
+ if TYPE_CHECKING:
20
+
21
+ @property
22
+ def portal_user_infos(self) -> models.QuerySet["PortalUserInfo"]: ...
23
+
24
+ def __str__(self):
25
+ """
26
+ Return the profession's name as its string representation.
27
+ """
28
+ return str(self.name)
@@ -0,0 +1,5 @@
1
+ from .portal_user_information import PortalUserInfo
2
+
3
+ __all__ = [
4
+ "PortalUserInfo",
5
+ ]
@@ -0,0 +1,41 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ # models.py in your main app
6
+
7
+ if TYPE_CHECKING:
8
+ from django.contrib.auth.models import User
9
+
10
+ from endoreg_db.models import Examiner
11
+
12
+ from ..profession import Profession
13
+
14
+
15
+ class PortalUserInfo(models.Model):
16
+ user = models.OneToOneField("auth.User", on_delete=models.CASCADE)
17
+ profession = models.ForeignKey(
18
+ "endoreg_db.Profession",
19
+ on_delete=models.CASCADE,
20
+ blank=True,
21
+ null=True,
22
+ related_name="portal_user_infos",
23
+ )
24
+ works_in_endoscopy = models.BooleanField(blank=True, null=True)
25
+ # Add other fields as needed
26
+
27
+ examiner = models.OneToOneField(
28
+ "endoreg_db.Examiner",
29
+ on_delete=models.CASCADE,
30
+ blank=True,
31
+ null=True,
32
+ related_name="portal_user_info",
33
+ )
34
+
35
+ if TYPE_CHECKING:
36
+ user: models.OneToOneField["User"]
37
+ profession: models.ForeignKey["Profession|None"]
38
+ examiner: models.OneToOneField["Examiner|None"]
39
+
40
+ def __str__(self):
41
+ return self.user.username
@@ -0,0 +1,15 @@
1
+ """Module for product models"""
2
+
3
+ from .product import Product
4
+ from .product_material import ProductMaterial
5
+ from .product_group import ProductGroup
6
+ from .reference_product import ReferenceProduct
7
+ from .product_weight import ProductWeight
8
+
9
+ __all__ = [
10
+ "Product",
11
+ "ProductMaterial",
12
+ "ProductGroup",
13
+ "ReferenceProduct",
14
+ "ProductWeight",
15
+ ]
@@ -0,0 +1,106 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ from endoreg_db.utils.product.sum_emissions import sum_emissions
6
+ from endoreg_db.utils.product.sum_weights import sum_weights
7
+
8
+ if TYPE_CHECKING:
9
+ from ...other.transport_route import TransportRoute
10
+ from .product_group import ProductGroup
11
+ from .product_material import ProductMaterial
12
+ from .reference_product import ReferenceProduct
13
+ # from .product_weight import ProductWeight
14
+
15
+
16
+ class ProductManager(models.Manager):
17
+ def get_by_natural_key(self, name):
18
+ return self.get(name=name)
19
+
20
+
21
+ class Product(models.Model):
22
+ objects = ProductManager()
23
+
24
+ name = models.CharField(max_length=255)
25
+
26
+ transport_route = models.ForeignKey(
27
+ "TransportRoute", on_delete=models.SET_NULL, null=True
28
+ )
29
+ product_group = models.ForeignKey(
30
+ "ProductGroup",
31
+ on_delete=models.SET_NULL,
32
+ null=True,
33
+ related_name="products",
34
+ )
35
+
36
+ if TYPE_CHECKING:
37
+ transport_route: models.ForeignKey["TransportRoute|None"]
38
+ product_group: models.ForeignKey["ProductGroup|None"]
39
+ reference_products: models.QuerySet["ReferenceProduct"]
40
+ product_product_materials: models.QuerySet["ProductMaterial"]
41
+
42
+ def natural_key(self):
43
+ return (self.name,)
44
+
45
+ def __str__(self):
46
+ result = f"{self.name}"
47
+ if self.product_group:
48
+ result += f" ({self.product_group}, "
49
+ else:
50
+ result += " (no product group, "
51
+
52
+ if self.transport_route:
53
+ result += f"{self.transport_route})"
54
+ else:
55
+ result += "no transport route)"
56
+
57
+ return result
58
+
59
+ def _calculate_material_metric(self, component: str, calculation_func):
60
+ """Helper method to calculate weight or emission for materials of a specific component."""
61
+ from .product_material import (
62
+ ProductMaterial,
63
+ ) # Import locally to avoid circular dependency issues at module level
64
+
65
+ materials = ProductMaterial.objects.filter(product=self, component=component)
66
+ return calculation_func(materials)
67
+
68
+ def get_product_weight(self):
69
+ """Get the product weight, prioritizing material definitions."""
70
+ from .product_material import ProductMaterial
71
+
72
+ # Check if there are specific material definitions for the product component
73
+ if ProductMaterial.objects.filter(product=self, component="product").exists():
74
+ return self.get_product_material_weight()
75
+
76
+ # Fallback: check if there is a direct product weight defined (Not implemented yet)
77
+ # TODO: Implement logic for ProductWeight lookup
78
+ return None # Or appropriate default/error
79
+
80
+ def get_package_weight(self):
81
+ """Get the package weight, prioritizing material definitions."""
82
+ from .product_material import ProductMaterial
83
+
84
+ # Check if there are specific material definitions for the package component
85
+ if ProductMaterial.objects.filter(product=self, component="package").exists():
86
+ return self.get_package_material_weight()
87
+
88
+ # Fallback: check if there is a direct package weight defined (Not implemented yet)
89
+ # TODO: Implement logic for PackageWeight lookup (if different from ProductWeight)
90
+ return None # Or appropriate default/error
91
+
92
+ def get_product_material_weight(self):
93
+ """Calculate the total weight based on defined product materials."""
94
+ return self._calculate_material_metric("product", sum_weights)
95
+
96
+ def get_package_material_weight(self):
97
+ """Calculate the total weight based on defined package materials."""
98
+ return self._calculate_material_metric("package", sum_weights)
99
+
100
+ def get_product_material_emission(self):
101
+ """Calculate the total emissions based on defined product materials."""
102
+ return self._calculate_material_metric("product", sum_emissions)
103
+
104
+ def get_package_material_emission(self):
105
+ """Calculate the total emissions based on defined package materials."""
106
+ return self._calculate_material_metric("package", sum_emissions)
@@ -0,0 +1,41 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+
4
+ if TYPE_CHECKING:
5
+ from endoreg_db.models import (
6
+ Product,
7
+ ReferenceProduct,
8
+ )
9
+
10
+
11
+ class ProductGroupManager(models.Manager):
12
+ def get_by_natural_key(self, name):
13
+ return self.get(name=name)
14
+
15
+
16
+ class ProductGroup(models.Model):
17
+ objects = ProductGroupManager()
18
+
19
+ name = models.CharField(max_length=255)
20
+
21
+ if TYPE_CHECKING:
22
+ reference_product: "ReferenceProduct"
23
+ products: models.QuerySet["Product"]
24
+
25
+ def natural_key(self):
26
+ return (self.name,)
27
+
28
+ def __str__(self):
29
+ return str(self.name)
30
+
31
+ def get_products(self) -> models.QuerySet["Product"]:
32
+ from .product import Product
33
+
34
+ products = self.products.all()
35
+ if products:
36
+ return products
37
+ else:
38
+ return Product.objects.none()
39
+
40
+ def get_reference_product(self) -> "None | ReferenceProduct":
41
+ return self.reference_product
@@ -0,0 +1,60 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ from endoreg_db.models.other.unit import Unit
6
+
7
+ if TYPE_CHECKING:
8
+ from ...other.material import Material
9
+ from ...other.unit import Unit
10
+ from .product import Product
11
+
12
+
13
+ class ProductMaterial(models.Model):
14
+ component = models.CharField(max_length=255)
15
+ material = models.ForeignKey(
16
+ "Material",
17
+ on_delete=models.CASCADE,
18
+ related_name="material_product_materials", # Changed related_name
19
+ )
20
+ product = models.ForeignKey(
21
+ "Product",
22
+ on_delete=models.CASCADE,
23
+ related_name="product_product_materials", # Changed related_name
24
+ )
25
+ unit = models.ForeignKey(
26
+ "Unit",
27
+ on_delete=models.CASCADE,
28
+ related_name="unit_product_materials", # Changed related_name
29
+ )
30
+ quantity = models.FloatField()
31
+
32
+ if TYPE_CHECKING:
33
+ product: models.ForeignKey["Product"]
34
+ material: models.ForeignKey["Material"]
35
+ unit: models.ForeignKey["Unit"]
36
+
37
+ def get_emission(self) -> tuple[float, Unit]:
38
+ emission_factor = self.material.emission_factor
39
+ if emission_factor is None:
40
+ raise Exception(
41
+ "No emission factor for material " + self.material.name + " found."
42
+ )
43
+
44
+ # make sure product_material.unit is the same as emission_factor.unit
45
+ if self.unit is not None and emission_factor.unit is not None:
46
+ if self.unit != emission_factor.unit:
47
+ raise Exception(
48
+ "Unit mismatch: "
49
+ + self.unit.name
50
+ + " != "
51
+ + emission_factor.unit.name
52
+ )
53
+
54
+ emmision_value = emission_factor.value * self.quantity
55
+ assert isinstance(emission_factor.unit, Unit)
56
+ emission_unit = emission_factor.unit
57
+ return emmision_value, emission_unit
58
+
59
+ def __str__(self) -> str:
60
+ return f"{self.product.name} - {self.material.name} - {self.quantity} {self.unit.name}"
@@ -0,0 +1,51 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ import pandas as pd
4
+ from django.db import models
5
+
6
+ if TYPE_CHECKING:
7
+ from ...other.unit import Unit
8
+ from .product import Product
9
+
10
+
11
+ class ProductWeightManager(models.Manager):
12
+ def get_by_natural_key(self, product, product_group, weight):
13
+ return self.get(product=product, product_group=product_group, weight=weight)
14
+
15
+
16
+ class ProductWeight(models.Model):
17
+ objects = ProductWeightManager()
18
+
19
+ name = models.CharField(max_length=255, null=True)
20
+ product = models.ForeignKey("Product", on_delete=models.CASCADE)
21
+ measured = models.FloatField(null=True)
22
+ verified = models.FloatField(null=True)
23
+ manufacturer = models.FloatField(null=True)
24
+ unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
25
+
26
+ if TYPE_CHECKING:
27
+ product: models.ForeignKey["Product"]
28
+ unit: models.ForeignKey["Unit|None"]
29
+
30
+ def get_weight(self):
31
+ if not pd.isnull(self.verified):
32
+ return self.verified
33
+ elif not pd.isnull(self.measured):
34
+ return self.measured
35
+ elif not pd.isnull(self.manufacturer):
36
+ return self.manufacturer
37
+ else:
38
+ return None
39
+
40
+ def get_weight_source(self):
41
+ if not pd.isnull(self.verified):
42
+ return "verified"
43
+ elif not pd.isnull(self.measured):
44
+ return "measured"
45
+ elif not pd.isnull(self.manufacturer):
46
+ return "manufacturer"
47
+ else:
48
+ return None
49
+
50
+ def __str__(self):
51
+ return f"{self.product} - {self.get_weight()} {self.unit} (Source: {self.get_weight_source()})"
@@ -0,0 +1,147 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ if TYPE_CHECKING:
6
+ from ...other.emission import EmissionFactor
7
+ from .product import Product
8
+ from .product_group import ProductGroup
9
+
10
+
11
+ class ReferenceProductManager(models.Manager):
12
+ def get_by_natural_key(self, product_name: str, product_group_name: str):
13
+ return self.get(
14
+ product__name=product_name, product_group__name=product_group_name
15
+ )
16
+
17
+
18
+ class ReferenceProduct(models.Model):
19
+ name = models.CharField(max_length=255)
20
+ product = models.ForeignKey(
21
+ "Product",
22
+ on_delete=models.CASCADE,
23
+ related_name="reference_products",
24
+ )
25
+ product_group = models.OneToOneField(
26
+ "ProductGroup",
27
+ on_delete=models.CASCADE,
28
+ related_name="reference_product", # Changed from "reference_products"
29
+ )
30
+ emission_factor_total = models.ForeignKey(
31
+ "EmissionFactor",
32
+ on_delete=models.SET_NULL,
33
+ null=True,
34
+ blank=True,
35
+ related_name="reference_products",
36
+ )
37
+ emission_factor_package = models.ForeignKey(
38
+ "EmissionFactor",
39
+ on_delete=models.SET_NULL,
40
+ null=True,
41
+ related_name="reference_product_package",
42
+ )
43
+ emission_factor_product = models.ForeignKey(
44
+ "EmissionFactor",
45
+ on_delete=models.SET_NULL,
46
+ null=True,
47
+ related_name="reference_product_product",
48
+ )
49
+
50
+ if TYPE_CHECKING:
51
+ product: models.ForeignKey["Product"]
52
+ product_group: models.ForeignKey["ProductGroup"]
53
+ emission_factor_total: models.ForeignKey["EmissionFactor|None"]
54
+ emission_factor_package: models.ForeignKey["EmissionFactor|None"]
55
+ emission_factor_product: models.ForeignKey["EmissionFactor|None"]
56
+
57
+ objects = ReferenceProductManager()
58
+
59
+ def __str__(self):
60
+ return self.product.name + " (" + self.product_group.name + ")"
61
+
62
+ def set_emission_factors(self):
63
+ from ...other.emission import EmissionFactor
64
+
65
+ product = self.product
66
+ emission_factor_name = (
67
+ f"{self.product_group.name}_{product.name}_total_emission_factor"
68
+ )
69
+ emission_factor_package_name = (
70
+ f"{self.product_group.name}_{product.name}_package_emission_factor"
71
+ )
72
+ emission_factor_product_name = (
73
+ f"{self.product_group.name}_{product.name}_product_emission_factor"
74
+ )
75
+
76
+ product_weight, product_weight_unit = product.get_product_material_weight()
77
+ package_weight, package_weight_unit = product.get_package_material_weight()
78
+ product_emission, product_emission_unit = (
79
+ product.get_product_material_emission()
80
+ )
81
+ package_emission, package_emission_unit = (
82
+ product.get_package_material_emission()
83
+ )
84
+
85
+ total_weight = product_weight + package_weight
86
+ total_emission = product_emission + package_emission
87
+
88
+ reference_unit = product_weight_unit
89
+ assert reference_unit == package_weight_unit, (
90
+ "Package weight units do not match"
91
+ )
92
+ assert reference_unit == product_emission_unit, (
93
+ "Product emission units do not match"
94
+ )
95
+ assert reference_unit == package_emission_unit, (
96
+ "Package emission units do not match"
97
+ )
98
+
99
+ product_emission_factor_value = product_emission / product_weight
100
+ package_emission_factor_value = package_emission / package_weight
101
+ total_emission_factor_value = total_emission / total_weight
102
+
103
+ emission_factor, created = EmissionFactor.objects.get_or_create(
104
+ name=emission_factor_name,
105
+ defaults={
106
+ "name": emission_factor_name,
107
+ "value": total_emission_factor_value,
108
+ "unit": reference_unit,
109
+ },
110
+ )
111
+ self.emission_factor_total = emission_factor
112
+
113
+ emission_factor_package, created = EmissionFactor.objects.get_or_create(
114
+ name=emission_factor_package_name,
115
+ defaults={
116
+ "name": emission_factor_package_name,
117
+ "value": package_emission_factor_value,
118
+ "unit": reference_unit,
119
+ },
120
+ )
121
+ self.emission_factor_package = emission_factor_package
122
+
123
+ emission_factor_product, created = EmissionFactor.objects.get_or_create(
124
+ name=emission_factor_product_name,
125
+ defaults={
126
+ "name": emission_factor_product_name,
127
+ "value": product_emission_factor_value,
128
+ "unit": reference_unit,
129
+ },
130
+ )
131
+ self.emission_factor_product = emission_factor_product
132
+
133
+ self.save()
134
+
135
+ def get_emission_factor(self, component: str):
136
+ # check if emission_factor_total exists:
137
+ if self.emission_factor_total is None:
138
+ self.set_emission_factors()
139
+
140
+ if component == "total":
141
+ return self.emission_factor_total
142
+ elif component == "package":
143
+ return self.emission_factor_package
144
+ elif component == "product":
145
+ return self.emission_factor_product
146
+ else:
147
+ raise Exception("Unknown component: " + component)
@@ -0,0 +1,7 @@
1
+ from .qualification import Qualification
2
+ from .qualification_type import QualificationType
3
+
4
+ __all__ = [
5
+ "Qualification",
6
+ "QualificationType",
7
+ ]
@@ -0,0 +1,43 @@
1
+ from typing import TYPE_CHECKING, cast
2
+
3
+ from django.db import models
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import (
7
+ QualificationType,
8
+ )
9
+
10
+
11
+ class QualificationManager(models.Manager):
12
+ def get_queryset(self):
13
+ """
14
+ Returns a queryset of qualifications filtered to include only active entries.
15
+ """
16
+ return super().get_queryset().filter(is_active=True)
17
+
18
+
19
+ class Qualification(models.Model):
20
+ """
21
+ Model representing a qualification.
22
+ """
23
+
24
+ name = models.CharField(max_length=255, unique=True)
25
+ description = models.TextField(blank=True, null=True)
26
+ is_active = models.BooleanField(default=True)
27
+
28
+ qualification_types = models.ManyToManyField(
29
+ "QualificationType",
30
+ related_name="qualifications",
31
+ )
32
+ if TYPE_CHECKING:
33
+ qualification_types = cast(
34
+ models.manager.RelatedManager["QualificationType"], qualification_types
35
+ )
36
+
37
+ objects = QualificationManager()
38
+
39
+ def __str__(self):
40
+ """
41
+ Returns the string representation of the qualification's name.
42
+ """
43
+ return str(self.name)
@@ -0,0 +1,39 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import (
7
+ Qualification,
8
+ )
9
+
10
+
11
+ class QualificationTypeManager(models.Manager):
12
+ def get_queryset(self):
13
+ """
14
+ Returns a queryset of active qualification types.
15
+
16
+ Only includes records where the `is_active` field is set to True.
17
+ """
18
+ return super().get_queryset().filter(is_active=True)
19
+
20
+
21
+ class QualificationType(models.Model):
22
+ """
23
+ Model representing a qualification type.
24
+ """
25
+
26
+ name = models.CharField(max_length=255, unique=True)
27
+ description = models.TextField(blank=True, null=True)
28
+ is_active = models.BooleanField(default=True)
29
+
30
+ objects = QualificationTypeManager()
31
+
32
+ if TYPE_CHECKING:
33
+ qualification: models.QuerySet["Qualification"]
34
+
35
+ def __str__(self):
36
+ """
37
+ Returns the string representation of the qualification type's name.
38
+ """
39
+ return str(self.name)
@@ -0,0 +1,9 @@
1
+ from .shift import Shift
2
+ from .shift_type import ShiftType
3
+ from .scheduled_days import ScheduledDays
4
+
5
+ __all__ = [
6
+ "Shift",
7
+ "ShiftType",
8
+ "ScheduledDays",
9
+ ]
@@ -0,0 +1,72 @@
1
+ from typing import TYPE_CHECKING
2
+
3
+ from django.db import models
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import (
7
+ CenterShift,
8
+ )
9
+
10
+
11
+ class ScheduledDaysManager(models.Manager):
12
+ def get_by_natural_key(self, name):
13
+ """
14
+ Retrieves a ScheduledDays instance by its unique name.
15
+
16
+ Args:
17
+ name: The unique name of the ScheduledDays instance to retrieve.
18
+
19
+ Returns:
20
+ The ScheduledDays instance matching the given name.
21
+ """
22
+ return self.get(name=name)
23
+
24
+
25
+ class ScheduledDays(models.Model):
26
+ """
27
+ Model representing scheduled days for a shift.
28
+ """
29
+
30
+ name = models.CharField(
31
+ max_length=255,
32
+ unique=True,
33
+ help_text="Name of the scheduled days.",
34
+ )
35
+ working_days = models.BooleanField(
36
+ null=True,
37
+ blank=True,
38
+ default=True,
39
+ )
40
+
41
+ non_working_days = models.BooleanField(
42
+ null=True,
43
+ blank=True,
44
+ default=False,
45
+ )
46
+
47
+ limited_time = models.BooleanField(
48
+ null=True,
49
+ blank=True,
50
+ default=False,
51
+ )
52
+
53
+ start_date = models.DateField(
54
+ null=True,
55
+ blank=True,
56
+ )
57
+
58
+ end_date = models.DateField(
59
+ null=True,
60
+ blank=True,
61
+ )
62
+
63
+ objects = ScheduledDaysManager()
64
+
65
+ if TYPE_CHECKING:
66
+ center_shifts: models.QuerySet["CenterShift"]
67
+
68
+ def __str__(self):
69
+ """
70
+ Returns a string representation of the scheduled day, including its name and date range.
71
+ """
72
+ return f"{self.name} - {self.start_date} to {self.end_date}"