endoreg-db 0.8.9.32__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of endoreg-db might be problematic. Click here for more details.
- endoreg_db/__init__.py +0 -0
- endoreg_db/_version.py +34 -0
- endoreg_db/admin.py +97 -0
- endoreg_db/api/serializers/finding_descriptions.py +0 -0
- endoreg_db/api/views/finding_descriptions.py +0 -0
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +17 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/authz/auth.py +78 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +20 -0
- endoreg_db/authz/middleware.py +84 -0
- endoreg_db/authz/permissions.py +138 -0
- endoreg_db/authz/policy.py +224 -0
- endoreg_db/authz/settings.py +64 -0
- endoreg_db/authz/views_auth.py +70 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +99 -0
- endoreg_db/config/__init__.py +0 -0
- endoreg_db/config/env.py +106 -0
- endoreg_db/config/settings/__init__.py +6 -0
- endoreg_db/config/settings/base.py +148 -0
- endoreg_db/config/settings/case_gen.py +32 -0
- endoreg_db/config/settings/dev.py +108 -0
- endoreg_db/config/settings/keycloak.py +177 -0
- endoreg_db/config/settings/prod.py +66 -0
- endoreg_db/config/settings/test.py +72 -0
- endoreg_db/data/__init__.py +135 -0
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/ai_model_label/label/data.yaml +88 -0
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_type/data.yaml +7 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
- endoreg_db/data/case_template/rule_value/.init +0 -0
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
- endoreg_db/data/case_template/template/base.yaml +8 -0
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
- endoreg_db/data/case_template/tmp/_rule_value +13 -0
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
- endoreg_db/data/center/data.yaml +99 -0
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/cardiovascular.yaml +37 -0
- endoreg_db/data/disease/hepatology.yaml +5 -0
- endoreg_db/data/disease/misc.yaml +5 -0
- endoreg_db/data/disease/renal.yaml +5 -0
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
- endoreg_db/data/distribution/date/patient.yaml +7 -0
- endoreg_db/data/distribution/multiple_categorical/.init +0 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscope_type/data.yaml +11 -0
- endoreg_db/data/endoscopy_processor/data.yaml +50 -0
- endoreg_db/data/event/cardiology.yaml +15 -0
- endoreg_db/data/event/neurology.yaml +14 -0
- endoreg_db/data/event/surgery.yaml +13 -0
- endoreg_db/data/event/thrombembolism.yaml +20 -0
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/examination/examinations/data.yaml +172 -0
- endoreg_db/data/examination/time/data.yaml +48 -0
- endoreg_db/data/examination/time-type/data.yaml +5 -0
- endoreg_db/data/examination/type/data.yaml +17 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/00_generic.yaml +35 -0
- endoreg_db/data/finding/00_generic_complication.yaml +9 -0
- endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
- endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
- endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
- endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
- endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
- endoreg_db/data/finding_classification/00_generic.yaml +44 -0
- endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
- endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
- endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
- endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
- endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
- endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
- endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
- endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
- endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
- endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
- endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
- endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
- endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
- endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_type/data.yaml +39 -0
- endoreg_db/data/gender/data.yaml +42 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/data.yaml +30 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/medication.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
- endoreg_db/data/lab_value/coagulation.yaml +54 -0
- endoreg_db/data/lab_value/electrolytes.yaml +228 -0
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
- endoreg_db/data/lab_value/hematology.yaml +184 -0
- endoreg_db/data/lab_value/hormones.yaml +59 -0
- endoreg_db/data/lab_value/lipids.yaml +53 -0
- endoreg_db/data/lab_value/misc.yaml +76 -0
- endoreg_db/data/lab_value/renal_function.yaml +12 -0
- endoreg_db/data/log_type/data.yaml +57 -0
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/material/material.yaml +91 -0
- endoreg_db/data/medication/anticoagulation.yaml +65 -0
- endoreg_db/data/medication/tah.yaml +70 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
- endoreg_db/data/medication_indication_type/data.yaml +11 -0
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
- endoreg_db/data/medication_intake_time/base.yaml +31 -0
- endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
- endoreg_db/data/medication_schedule/ass.yaml +12 -0
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +59 -0
- endoreg_db/data/network_device_type/data.yaml +12 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
- endoreg_db/data/pdf_type/data.yaml +46 -0
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
- endoreg_db/data/profession/data.yaml +70 -0
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
- endoreg_db/data/requirement/01_patient_data.yaml +93 -0
- endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/old/gender.yaml +0 -0
- endoreg_db/data/requirement/old/lab_value.yaml +441 -0
- endoreg_db/data/requirement/old/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
- endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
- endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set_type/data.yaml +41 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift/m2.yaml +0 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
- endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
- endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
- endoreg_db/data/unit/concentration.yaml +115 -0
- endoreg_db/data/unit/data.yaml +17 -0
- endoreg_db/data/unit/length.yaml +31 -0
- endoreg_db/data/unit/misc.yaml +20 -0
- endoreg_db/data/unit/rate.yaml +6 -0
- endoreg_db/data/unit/time.yaml +48 -0
- endoreg_db/data/unit/volume.yaml +35 -0
- endoreg_db/data/unit/weight.yaml +38 -0
- endoreg_db/data/waste/data.yaml +12 -0
- endoreg_db/exceptions.py +24 -0
- endoreg_db/export/frames/export.py +6 -0
- endoreg_db/export/frames/export_frames_with_labels.py +616 -0
- endoreg_db/factories/__init__.py +0 -0
- endoreg_db/forms/__init__.py +4 -0
- endoreg_db/forms/examination_form.py +12 -0
- endoreg_db/forms/patient_finding_intervention_form.py +40 -0
- endoreg_db/forms/patient_form.py +23 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -0
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
- endoreg_db/forms/settings/__init__.py +11 -0
- endoreg_db/forms/unit.py +7 -0
- endoreg_db/helpers/__init__.py +0 -0
- endoreg_db/helpers/count_db.py +48 -0
- endoreg_db/helpers/data_loader.py +280 -0
- endoreg_db/helpers/default_objects.py +414 -0
- endoreg_db/helpers/download_segmentation_model.py +32 -0
- endoreg_db/helpers/interact.py +1 -0
- endoreg_db/helpers/test_video_helper.py +127 -0
- endoreg_db/import_files/__init__.py +27 -0
- endoreg_db/import_files/context/__init__.py +7 -0
- endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
- endoreg_db/import_files/context/ensure_center.py +17 -0
- endoreg_db/import_files/context/file_lock.py +66 -0
- endoreg_db/import_files/context/import_context.py +42 -0
- endoreg_db/import_files/context/validate_directories.py +57 -0
- endoreg_db/import_files/file_storage/__init__.py +15 -0
- endoreg_db/import_files/file_storage/create_report_file.py +99 -0
- endoreg_db/import_files/file_storage/create_video_file.py +104 -0
- endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
- endoreg_db/import_files/file_storage/state_management.py +463 -0
- endoreg_db/import_files/file_storage/storage.py +42 -0
- endoreg_db/import_files/import_service.md +26 -0
- endoreg_db/import_files/processing/__init__.py +11 -0
- endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
- endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
- endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
- endoreg_db/import_files/pseudonymization/__init__.py +0 -0
- endoreg_db/import_files/pseudonymization/fake.py +52 -0
- endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
- endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
- endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
- endoreg_db/import_files/report_import_service.py +147 -0
- endoreg_db/import_files/video_import_service.py +154 -0
- endoreg_db/logger_conf.py +156 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +132 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
- endoreg_db/management/commands/export_frame_annot.py +196 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
- endoreg_db/management/commands/fix_video_paths.py +186 -0
- endoreg_db/management/commands/import_report.py +361 -0
- endoreg_db/management/commands/list_routes.py +20 -0
- endoreg_db/management/commands/load_ai_model_data.py +83 -0
- endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
- endoreg_db/management/commands/load_base_db_data.py +63 -0
- endoreg_db/management/commands/load_center_data.py +68 -0
- endoreg_db/management/commands/load_contraindication_data.py +39 -0
- endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
- endoreg_db/management/commands/load_disease_classification_data.py +38 -0
- endoreg_db/management/commands/load_disease_data.py +59 -0
- endoreg_db/management/commands/load_distribution_data.py +63 -0
- endoreg_db/management/commands/load_endoscope_data.py +58 -0
- endoreg_db/management/commands/load_event_data.py +39 -0
- endoreg_db/management/commands/load_examination_data.py +78 -0
- endoreg_db/management/commands/load_examination_indication_data.py +85 -0
- endoreg_db/management/commands/load_finding_data.py +115 -0
- endoreg_db/management/commands/load_gender_data.py +37 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +142 -0
- endoreg_db/management/commands/load_information_source.py +46 -0
- endoreg_db/management/commands/load_lab_value_data.py +52 -0
- endoreg_db/management/commands/load_legacy_data.py +303 -0
- endoreg_db/management/commands/load_medication_data.py +104 -0
- endoreg_db/management/commands/load_name_data.py +36 -0
- endoreg_db/management/commands/load_organ_data.py +39 -0
- endoreg_db/management/commands/load_pdf_type_data.py +58 -0
- endoreg_db/management/commands/load_profession_data.py +40 -0
- endoreg_db/management/commands/load_qualification_data.py +56 -0
- endoreg_db/management/commands/load_report_reader_flag_data.py +40 -0
- endoreg_db/management/commands/load_requirement_data.py +207 -0
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/load_risk_data.py +57 -0
- endoreg_db/management/commands/load_shift_data.py +57 -0
- endoreg_db/management/commands/load_tag_data.py +54 -0
- endoreg_db/management/commands/load_unit_data.py +40 -0
- endoreg_db/management/commands/load_user_groups.py +26 -0
- endoreg_db/management/commands/model_input.py +169 -0
- endoreg_db/management/commands/register_ai_model.py +70 -0
- endoreg_db/management/commands/setup_endoreg_db.py +459 -0
- endoreg_db/management/commands/start_filewatcher.py +115 -0
- endoreg_db/management/commands/storage_management.py +622 -0
- endoreg_db/management/commands/summarize_db_content.py +280 -0
- endoreg_db/management/commands/train_image_multilabel_model.py +144 -0
- endoreg_db/management/commands/validate_video_files.py +189 -0
- endoreg_db/management/commands/video_validation.py +20 -0
- endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
- endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
- endoreg_db/mermaid/binary_classification_annotation.md +50 -0
- endoreg_db/mermaid/classification.md +8 -0
- endoreg_db/mermaid/examination.md +8 -0
- endoreg_db/mermaid/findings.md +7 -0
- endoreg_db/mermaid/image_classification.md +28 -0
- endoreg_db/mermaid/interventions.md +8 -0
- endoreg_db/mermaid/morphology.md +8 -0
- endoreg_db/mermaid/patient_creation.md +14 -0
- endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
- endoreg_db/migrations/0001_initial.py +1953 -0
- endoreg_db/migrations/__init__.py +0 -0
- endoreg_db/models/__init__.py +322 -0
- endoreg_db/models/administration/__init__.py +95 -0
- endoreg_db/models/administration/ai/__init__.py +9 -0
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +180 -0
- endoreg_db/models/administration/ai/model_type.py +42 -0
- endoreg_db/models/administration/case/__init__.py +5 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/administration/case/case_template/__init__.py +3 -0
- endoreg_db/models/administration/case/case_template/case_template.py +3 -0
- endoreg_db/models/administration/case/case_template/case_template_rule.py +3 -0
- endoreg_db/models/administration/case/case_template/case_template_rule_value.py +3 -0
- endoreg_db/models/administration/case/case_template/case_template_type.py +3 -0
- endoreg_db/models/administration/center/__init__.py +13 -0
- endoreg_db/models/administration/center/center.py +85 -0
- endoreg_db/models/administration/center/center_product.py +67 -0
- endoreg_db/models/administration/center/center_resource.py +69 -0
- endoreg_db/models/administration/center/center_shift.py +94 -0
- endoreg_db/models/administration/center/center_waste.py +42 -0
- endoreg_db/models/administration/person/__init__.py +26 -0
- endoreg_db/models/administration/person/employee/__init__.py +3 -0
- endoreg_db/models/administration/person/employee/employee.py +40 -0
- endoreg_db/models/administration/person/employee/employee_qualification.py +44 -0
- endoreg_db/models/administration/person/employee/employee_type.py +50 -0
- endoreg_db/models/administration/person/examiner/__init__.py +4 -0
- endoreg_db/models/administration/person/examiner/examiner.py +64 -0
- endoreg_db/models/administration/person/names/__init__.py +0 -0
- endoreg_db/models/administration/person/names/first_name.py +20 -0
- endoreg_db/models/administration/person/names/last_name.py +20 -0
- endoreg_db/models/administration/person/patient/__init__.py +7 -0
- endoreg_db/models/administration/person/patient/patient.py +488 -0
- endoreg_db/models/administration/person/patient/patient_external_id.py +36 -0
- endoreg_db/models/administration/person/person.py +35 -0
- endoreg_db/models/administration/person/profession/__init__.py +28 -0
- endoreg_db/models/administration/person/user/__init__.py +5 -0
- endoreg_db/models/administration/person/user/portal_user_information.py +41 -0
- endoreg_db/models/administration/product/__init__.py +15 -0
- endoreg_db/models/administration/product/product.py +106 -0
- endoreg_db/models/administration/product/product_group.py +41 -0
- endoreg_db/models/administration/product/product_material.py +60 -0
- endoreg_db/models/administration/product/product_weight.py +51 -0
- endoreg_db/models/administration/product/reference_product.py +147 -0
- endoreg_db/models/administration/qualification/__init__.py +7 -0
- endoreg_db/models/administration/qualification/qualification.py +43 -0
- endoreg_db/models/administration/qualification/qualification_type.py +39 -0
- endoreg_db/models/administration/shift/__init__.py +9 -0
- endoreg_db/models/administration/shift/scheduled_days.py +72 -0
- endoreg_db/models/administration/shift/shift.py +57 -0
- endoreg_db/models/administration/shift/shift_type.py +108 -0
- endoreg_db/models/aidataset/__init__.py +5 -0
- endoreg_db/models/aidataset/aidataset.py +193 -0
- endoreg_db/models/label/__init__.py +23 -0
- endoreg_db/models/label/annotation/__init__.py +12 -0
- endoreg_db/models/label/annotation/image_classification.py +85 -0
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +61 -0
- endoreg_db/models/label/label.py +91 -0
- endoreg_db/models/label/label_set.py +68 -0
- endoreg_db/models/label/label_type.py +29 -0
- endoreg_db/models/label/label_video_segment/__init__.py +3 -0
- endoreg_db/models/label/label_video_segment/_create_from_video.py +42 -0
- endoreg_db/models/label/label_video_segment/label_video_segment.py +611 -0
- endoreg_db/models/label/video_segmentation_label.py +35 -0
- endoreg_db/models/label/video_segmentation_labelset.py +28 -0
- endoreg_db/models/media/__init__.py +23 -0
- endoreg_db/models/media/frame/__init__.py +3 -0
- endoreg_db/models/media/frame/frame.py +137 -0
- endoreg_db/models/media/pdf/__init__.py +12 -0
- endoreg_db/models/media/pdf/raw_pdf.py +764 -0
- endoreg_db/models/media/pdf/report_file.py +162 -0
- endoreg_db/models/media/pdf/report_reader/__init__.py +7 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +85 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_flag.py +46 -0
- endoreg_db/models/media/video/__init__.py +9 -0
- endoreg_db/models/media/video/create_from_file.py +402 -0
- endoreg_db/models/media/video/pipe_1.py +258 -0
- endoreg_db/models/media/video/pipe_2.py +129 -0
- endoreg_db/models/media/video/video_file.py +907 -0
- endoreg_db/models/media/video/video_file_ai.py +828 -0
- endoreg_db/models/media/video/video_file_anonymize.py +524 -0
- endoreg_db/models/media/video/video_file_frames/__init__.py +49 -0
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +25 -0
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +126 -0
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +233 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +36 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +13 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +24 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +40 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +44 -0
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +30 -0
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +205 -0
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +228 -0
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +107 -0
- endoreg_db/models/media/video/video_file_io.py +272 -0
- endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +58 -0
- endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +62 -0
- endoreg_db/models/media/video/video_file_meta/get_fps.py +183 -0
- endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +198 -0
- endoreg_db/models/media/video/video_file_meta/text_meta.py +178 -0
- endoreg_db/models/media/video/video_file_meta/video_meta.py +105 -0
- endoreg_db/models/media/video/video_file_segments.py +317 -0
- endoreg_db/models/media/video/video_metadata.py +67 -0
- endoreg_db/models/media/video/video_processing.py +192 -0
- endoreg_db/models/medical/__init__.py +136 -0
- endoreg_db/models/medical/contraindication/README.md +1 -0
- endoreg_db/models/medical/contraindication/__init__.py +29 -0
- endoreg_db/models/medical/disease.py +174 -0
- endoreg_db/models/medical/event.py +154 -0
- endoreg_db/models/medical/examination/__init__.py +20 -0
- endoreg_db/models/medical/examination/examination.py +183 -0
- endoreg_db/models/medical/examination/examination_indication.py +229 -0
- endoreg_db/models/medical/examination/examination_time.py +68 -0
- endoreg_db/models/medical/examination/examination_time_type.py +44 -0
- endoreg_db/models/medical/examination/examination_type.py +47 -0
- endoreg_db/models/medical/finding/__init__.py +20 -0
- endoreg_db/models/medical/finding/finding.py +113 -0
- endoreg_db/models/medical/finding/finding_classification.py +131 -0
- endoreg_db/models/medical/finding/finding_intervention.py +68 -0
- endoreg_db/models/medical/finding/finding_type.py +38 -0
- endoreg_db/models/medical/hardware/__init__.py +8 -0
- endoreg_db/models/medical/hardware/endoscope.py +77 -0
- endoreg_db/models/medical/hardware/endoscopy_processor.py +182 -0
- endoreg_db/models/medical/laboratory/__init__.py +5 -0
- endoreg_db/models/medical/laboratory/lab_value.py +490 -0
- endoreg_db/models/medical/medication/__init__.py +23 -0
- endoreg_db/models/medical/medication/medication.py +45 -0
- endoreg_db/models/medical/medication/medication_indication.py +78 -0
- endoreg_db/models/medical/medication/medication_indication_type.py +58 -0
- endoreg_db/models/medical/medication/medication_intake_time.py +58 -0
- endoreg_db/models/medical/medication/medication_schedule.py +58 -0
- endoreg_db/models/medical/organ/__init__.py +38 -0
- endoreg_db/models/medical/patient/__init__.py +48 -0
- endoreg_db/models/medical/patient/medication_examples.py +56 -0
- endoreg_db/models/medical/patient/patient_disease.py +72 -0
- endoreg_db/models/medical/patient/patient_event.py +80 -0
- endoreg_db/models/medical/patient/patient_examination.py +280 -0
- endoreg_db/models/medical/patient/patient_examination_indication.py +57 -0
- endoreg_db/models/medical/patient/patient_finding.py +416 -0
- endoreg_db/models/medical/patient/patient_finding_classification.py +231 -0
- endoreg_db/models/medical/patient/patient_finding_intervention.py +37 -0
- endoreg_db/models/medical/patient/patient_lab_sample.py +157 -0
- endoreg_db/models/medical/patient/patient_lab_value.py +247 -0
- endoreg_db/models/medical/patient/patient_medication.py +111 -0
- endoreg_db/models/medical/patient/patient_medication_schedule.py +152 -0
- endoreg_db/models/medical/risk/__init__.py +7 -0
- endoreg_db/models/medical/risk/risk.py +73 -0
- endoreg_db/models/medical/risk/risk_type.py +54 -0
- endoreg_db/models/metadata/__init__.py +19 -0
- endoreg_db/models/metadata/model_meta.py +266 -0
- endoreg_db/models/metadata/model_meta_logic.py +485 -0
- endoreg_db/models/metadata/pdf_meta.py +96 -0
- endoreg_db/models/metadata/sensitive_meta.py +345 -0
- endoreg_db/models/metadata/sensitive_meta_logic.py +1161 -0
- endoreg_db/models/metadata/video_meta.py +459 -0
- endoreg_db/models/metadata/video_prediction_logic.py +232 -0
- endoreg_db/models/metadata/video_prediction_meta.py +319 -0
- endoreg_db/models/operation_log.py +63 -0
- endoreg_db/models/other/__init__.py +40 -0
- endoreg_db/models/other/distribution/__init__.py +46 -0
- endoreg_db/models/other/distribution/base_value_distribution.py +22 -0
- endoreg_db/models/other/distribution/date_value_distribution.py +163 -0
- endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +50 -0
- endoreg_db/models/other/distribution/numeric_value_distribution.py +211 -0
- endoreg_db/models/other/distribution/single_categorical_value_distribution.py +23 -0
- endoreg_db/models/other/emission/__init__.py +5 -0
- endoreg_db/models/other/emission/emission_factor.py +110 -0
- endoreg_db/models/other/gender.py +32 -0
- endoreg_db/models/other/information_source.py +190 -0
- endoreg_db/models/other/material.py +34 -0
- endoreg_db/models/other/resource.py +24 -0
- endoreg_db/models/other/tag.py +32 -0
- endoreg_db/models/other/transport_route.py +40 -0
- endoreg_db/models/other/unit.py +40 -0
- endoreg_db/models/other/waste.py +28 -0
- endoreg_db/models/report/__init__.py +0 -0
- endoreg_db/models/report/images.py +0 -0
- endoreg_db/models/report/report.py +5 -0
- endoreg_db/models/requirement/__init__.py +11 -0
- endoreg_db/models/requirement/requirement.py +792 -0
- endoreg_db/models/requirement/requirement_error.py +84 -0
- endoreg_db/models/requirement/requirement_evaluation/__init__.py +6 -0
- endoreg_db/models/requirement/requirement_evaluation/evaluate_with_dependencies.py +268 -0
- endoreg_db/models/requirement/requirement_evaluation/get_values.py +40 -0
- endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +6 -0
- endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +137 -0
- endoreg_db/models/requirement/requirement_operator.py +187 -0
- endoreg_db/models/requirement/requirement_set.py +327 -0
- endoreg_db/models/state/__init__.py +13 -0
- endoreg_db/models/state/abstract.py +11 -0
- endoreg_db/models/state/anonymization.py +30 -0
- endoreg_db/models/state/audit_ledger.py +155 -0
- endoreg_db/models/state/label_video_segment.py +31 -0
- endoreg_db/models/state/processing_history/__init__.py +3 -0
- endoreg_db/models/state/processing_history/processing_history.py +136 -0
- endoreg_db/models/state/raw_pdf.py +219 -0
- endoreg_db/models/state/sensitive_meta.py +50 -0
- endoreg_db/models/state/video.py +251 -0
- endoreg_db/models/upload_job.py +100 -0
- endoreg_db/models/utils.py +138 -0
- endoreg_db/queries/__init__.py +3 -0
- endoreg_db/queries/annotations/__init__.py +1 -0
- endoreg_db/queries/annotations/legacy.py +169 -0
- endoreg_db/queries/sanity/__init_.py +0 -0
- endoreg_db/root_urls.py +27 -0
- endoreg_db/schemas/__init__.py +0 -0
- endoreg_db/schemas/examination_evaluation.py +30 -0
- endoreg_db/serializers/Frames_NICE_and_PARIS_classifications.py +861 -0
- endoreg_db/serializers/__init__.py +104 -0
- endoreg_db/serializers/administration/__init__.py +13 -0
- endoreg_db/serializers/administration/ai/__init__.py +9 -0
- endoreg_db/serializers/administration/ai/active_model.py +12 -0
- endoreg_db/serializers/administration/ai/ai_model.py +20 -0
- endoreg_db/serializers/administration/ai/model_type.py +12 -0
- endoreg_db/serializers/administration/center.py +14 -0
- endoreg_db/serializers/administration/gender.py +11 -0
- endoreg_db/serializers/anonymization.py +77 -0
- endoreg_db/serializers/evaluation/examination_evaluation.py +0 -0
- endoreg_db/serializers/examination/__init__.py +10 -0
- endoreg_db/serializers/examination/base.py +45 -0
- endoreg_db/serializers/examination/dropdown.py +20 -0
- endoreg_db/serializers/examination_serializer.py +9 -0
- endoreg_db/serializers/finding/__init__.py +5 -0
- endoreg_db/serializers/finding/finding.py +61 -0
- endoreg_db/serializers/finding_classification/__init__.py +7 -0
- endoreg_db/serializers/finding_classification/choice.py +19 -0
- endoreg_db/serializers/finding_classification/classification.py +11 -0
- endoreg_db/serializers/label_video_segment/__init__.py +9 -0
- endoreg_db/serializers/label_video_segment/image_classification_annotation.py +62 -0
- endoreg_db/serializers/label_video_segment/label/__init__.py +6 -0
- endoreg_db/serializers/label_video_segment/label/label.py +15 -0
- endoreg_db/serializers/label_video_segment/label_video_segment.py +427 -0
- endoreg_db/serializers/meta/__init__.py +13 -0
- endoreg_db/serializers/meta/sensitive_meta_detail.py +122 -0
- endoreg_db/serializers/meta/sensitive_meta_update.py +153 -0
- endoreg_db/serializers/meta/sensitive_meta_verification.py +62 -0
- endoreg_db/serializers/meta/video_meta.py +39 -0
- endoreg_db/serializers/misc/__init__.py +14 -0
- endoreg_db/serializers/misc/file_overview.py +72 -0
- endoreg_db/serializers/misc/sensitive_patient_data.py +144 -0
- endoreg_db/serializers/misc/stats.py +35 -0
- endoreg_db/serializers/misc/translatable_field_mix_in.py +44 -0
- endoreg_db/serializers/misc/upload_job.py +74 -0
- endoreg_db/serializers/patient/__init__.py +12 -0
- endoreg_db/serializers/patient/patient.py +103 -0
- endoreg_db/serializers/patient/patient_dropdown.py +35 -0
- endoreg_db/serializers/patient_examination/__init__.py +7 -0
- endoreg_db/serializers/patient_examination/patient_examination.py +168 -0
- endoreg_db/serializers/patient_finding/__init__.py +15 -0
- endoreg_db/serializers/patient_finding/patient_finding.py +32 -0
- endoreg_db/serializers/patient_finding/patient_finding_classification.py +47 -0
- endoreg_db/serializers/patient_finding/patient_finding_detail.py +62 -0
- endoreg_db/serializers/patient_finding/patient_finding_intervention.py +28 -0
- endoreg_db/serializers/patient_finding/patient_finding_list.py +40 -0
- endoreg_db/serializers/patient_finding/patient_finding_write.py +135 -0
- endoreg_db/serializers/pdf/__init__.py +3 -0
- endoreg_db/serializers/pdf/anony_text_validation.py +101 -0
- endoreg_db/serializers/requirements/requirement_schema.py +20 -0
- endoreg_db/serializers/requirements/requirement_sets.py +99 -0
- endoreg_db/serializers/sensitive_meta_serializer.py +301 -0
- endoreg_db/serializers/video/__init__.py +7 -0
- endoreg_db/serializers/video/video_file.py +283 -0
- endoreg_db/serializers/video/video_file_brief.py +14 -0
- endoreg_db/serializers/video/video_file_detail.py +96 -0
- endoreg_db/serializers/video/video_file_list.py +100 -0
- endoreg_db/serializers/video/video_processing_history.py +172 -0
- endoreg_db/serializers/video_examination.py +198 -0
- endoreg_db/services/__init__.py +5 -0
- endoreg_db/services/anonymization.py +274 -0
- endoreg_db/services/examination_evaluation.py +172 -0
- endoreg_db/services/finding_description_service.py +0 -0
- endoreg_db/services/lookup_service.py +424 -0
- endoreg_db/services/lookup_store.py +266 -0
- endoreg_db/services/model_meta_from_hf.py +76 -0
- endoreg_db/services/pdf_import.py +0 -0
- endoreg_db/services/polling_coordinator.py +319 -0
- endoreg_db/services/pseudonym_service.py +94 -0
- endoreg_db/services/report_import.py +13 -0
- endoreg_db/services/segment_sync.py +171 -0
- endoreg_db/services/video_import.py +9 -0
- endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
- endoreg_db/templates/admin/start_examination.html +12 -0
- endoreg_db/templates/timeline.html +176 -0
- endoreg_db/urls/__init__.py +56 -0
- endoreg_db/urls/ai.py +14 -0
- endoreg_db/urls/anonymization.py +78 -0
- endoreg_db/urls/auth.py +16 -0
- endoreg_db/urls/classification.py +34 -0
- endoreg_db/urls/examination.py +63 -0
- endoreg_db/urls/media.py +251 -0
- endoreg_db/urls/patient.py +23 -0
- endoreg_db/urls/requirements.py +15 -0
- endoreg_db/urls/root_urls.py +28 -0
- endoreg_db/urls/stats.py +54 -0
- endoreg_db/urls/upload.py +12 -0
- endoreg_db/urls.py +9 -0
- endoreg_db/utils/__init__.py +97 -0
- endoreg_db/utils/ai/__init__.py +9 -0
- endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
- endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
- endoreg_db/utils/ai/get.py +6 -0
- endoreg_db/utils/ai/inference_dataset.py +51 -0
- endoreg_db/utils/ai/model_training/config.py +117 -0
- endoreg_db/utils/ai/model_training/dataset.py +74 -0
- endoreg_db/utils/ai/model_training/losses.py +68 -0
- endoreg_db/utils/ai/model_training/metrics.py +78 -0
- endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
- endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
- endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
- endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
- endoreg_db/utils/ai/postprocess.py +63 -0
- endoreg_db/utils/ai/predict.py +293 -0
- endoreg_db/utils/ai/preprocess.py +76 -0
- endoreg_db/utils/calc_duration_seconds.py +24 -0
- endoreg_db/utils/case_generator/__init__.py +3 -0
- endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
- endoreg_db/utils/check_video_files.py +175 -0
- endoreg_db/utils/cropping.py +30 -0
- endoreg_db/utils/dataloader.py +285 -0
- endoreg_db/utils/dates.py +59 -0
- endoreg_db/utils/defaults/set_default_center.py +33 -0
- endoreg_db/utils/env.py +37 -0
- endoreg_db/utils/extract_specific_frames.py +87 -0
- endoreg_db/utils/file_operations.py +70 -0
- endoreg_db/utils/fix_video_path_direct.py +157 -0
- endoreg_db/utils/frame_anonymization_utils.py +463 -0
- endoreg_db/utils/hashs.py +138 -0
- endoreg_db/utils/links/__init__.py +0 -0
- endoreg_db/utils/links/requirement_link.py +237 -0
- endoreg_db/utils/mime_types.py +0 -0
- endoreg_db/utils/names.py +82 -0
- endoreg_db/utils/ocr.py +195 -0
- endoreg_db/utils/operation_log.py +87 -0
- endoreg_db/utils/parse_and_generate_yaml.py +45 -0
- endoreg_db/utils/paths.py +159 -0
- endoreg_db/utils/permissions.py +160 -0
- endoreg_db/utils/pipelines/Readme.md +235 -0
- endoreg_db/utils/pipelines/__init__.py +0 -0
- endoreg_db/utils/pipelines/process_video_dir.py +144 -0
- endoreg_db/utils/product/__init__.py +0 -0
- endoreg_db/utils/product/sum_emissions.py +22 -0
- endoreg_db/utils/product/sum_weights.py +20 -0
- endoreg_db/utils/pydantic_models/__init__.py +5 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/requirement_helpers.py +0 -0
- endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
- endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
- endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
- endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
- endoreg_db/utils/setup_config.py +196 -0
- endoreg_db/utils/storage.py +117 -0
- endoreg_db/utils/translation.py +31 -0
- endoreg_db/utils/uuid.py +5 -0
- endoreg_db/utils/validate_endo_roi.py +33 -0
- endoreg_db/utils/validate_subcategory_dict.py +93 -0
- endoreg_db/utils/validate_video_detailed.py +415 -0
- endoreg_db/utils/video/__init__.py +30 -0
- endoreg_db/utils/video/extract_frames.py +100 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
- endoreg_db/utils/video/names.py +47 -0
- endoreg_db/utils/video/streaming_processor.py +386 -0
- endoreg_db/utils/video/video_splitter.py +105 -0
- endoreg_db/versioning.md +79 -0
- endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
- endoreg_db/views/__init__.py +157 -0
- endoreg_db/views/anonymization/__init__.py +31 -0
- endoreg_db/views/anonymization/media_management.py +486 -0
- endoreg_db/views/anonymization/overview.py +307 -0
- endoreg_db/views/anonymization/validate.py +310 -0
- endoreg_db/views/auth/__init__.py +13 -0
- endoreg_db/views/auth/keycloak.py +146 -0
- endoreg_db/views/examination/__init__.py +30 -0
- endoreg_db/views/examination/examination.py +37 -0
- endoreg_db/views/examination/examination_manifest_cache.py +26 -0
- endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
- endoreg_db/views/examination/get_finding_classifications.py +38 -0
- endoreg_db/views/examination/get_findings.py +39 -0
- endoreg_db/views/examination/get_instruments.py +19 -0
- endoreg_db/views/examination/get_interventions.py +14 -0
- endoreg_db/views/finding/__init__.py +9 -0
- endoreg_db/views/finding/finding.py +116 -0
- endoreg_db/views/finding/get_classifications.py +14 -0
- endoreg_db/views/finding/get_interventions.py +17 -0
- endoreg_db/views/finding_classification/__init__.py +13 -0
- endoreg_db/views/finding_classification/base.py +0 -0
- endoreg_db/views/finding_classification/finding_classification.py +41 -0
- endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
- endoreg_db/views/media/__init__.py +32 -0
- endoreg_db/views/media/pdf_media.py +411 -0
- endoreg_db/views/media/sensitive_metadata.py +372 -0
- endoreg_db/views/media/video_media.py +275 -0
- endoreg_db/views/meta/__init__.py +7 -0
- endoreg_db/views/meta/sensitive_meta_list.py +102 -0
- endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
- endoreg_db/views/misc/__init__.py +29 -0
- endoreg_db/views/misc/center.py +14 -0
- endoreg_db/views/misc/csrf.py +8 -0
- endoreg_db/views/misc/gender.py +15 -0
- endoreg_db/views/misc/stats.py +255 -0
- endoreg_db/views/misc/upload_views.py +241 -0
- endoreg_db/views/patient/__init__.py +3 -0
- endoreg_db/views/patient/patient.py +253 -0
- endoreg_db/views/patient_examination/__init__.py +11 -0
- endoreg_db/views/patient_examination/patient_examination.py +141 -0
- endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
- endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
- endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
- endoreg_db/views/patient_examination/video.py +228 -0
- endoreg_db/views/patient_finding/__init__.py +7 -0
- endoreg_db/views/patient_finding/base.py +0 -0
- endoreg_db/views/patient_finding/patient_finding.py +71 -0
- endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
- endoreg_db/views/patient_finding_classification/__init__.py +5 -0
- endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
- endoreg_db/views/report/__init__.py +7 -0
- endoreg_db/views/report/reimport.py +177 -0
- endoreg_db/views/report/report_stream.py +191 -0
- endoreg_db/views/requirement/__init__.py +11 -0
- endoreg_db/views/requirement/evaluate.py +278 -0
- endoreg_db/views/requirement/lookup.py +380 -0
- endoreg_db/views/requirement/lookup_store.py +183 -0
- endoreg_db/views/requirement/requirement_utils.py +87 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +266 -0
- endoreg_db/views/video/__init__.py +49 -0
- endoreg_db/views/video/ai/__init__.py +8 -0
- endoreg_db/views/video/ai/label.py +159 -0
- endoreg_db/views/video/correction.py +529 -0
- endoreg_db/views/video/reimport.py +230 -0
- endoreg_db/views/video/segments_crud.py +709 -0
- endoreg_db/views/video/video_apply_mask.py +49 -0
- endoreg_db/views/video/video_correction.py +22 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_metadata.py +101 -0
- endoreg_db/views/video/video_processing_history.py +25 -0
- endoreg_db/views/video/video_remove_frames.py +49 -0
- endoreg_db/views/video/video_stream.py +334 -0
- endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
- endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
- endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
- endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
|
@@ -0,0 +1,372 @@
|
|
|
1
|
+
# Modern Media Framework: Sensitive Metadata Management
|
|
2
|
+
|
|
3
|
+
from django.db import transaction
|
|
4
|
+
from django.db.models import Q
|
|
5
|
+
from django.shortcuts import get_object_or_404
|
|
6
|
+
import json
|
|
7
|
+
import logging
|
|
8
|
+
|
|
9
|
+
from numpy import number
|
|
10
|
+
from rest_framework import status
|
|
11
|
+
from rest_framework.decorators import api_view, permission_classes
|
|
12
|
+
from rest_framework.response import Response
|
|
13
|
+
|
|
14
|
+
from endoreg_db.models import RawPdfFile, SensitiveMeta, VideoFile
|
|
15
|
+
from endoreg_db.serializers.meta import (
|
|
16
|
+
SensitiveMetaDetailSerializer,
|
|
17
|
+
SensitiveMetaUpdateSerializer,
|
|
18
|
+
)
|
|
19
|
+
from endoreg_db.utils.permissions import EnvironmentAwarePermission
|
|
20
|
+
logger = logging.getLogger(__name__)
|
|
21
|
+
# === VIDEO SENSITIVE METADATA ===
|
|
22
|
+
|
|
23
|
+
|
|
24
|
+
@api_view(["GET"])
|
|
25
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
26
|
+
def get_sensitive_metadata_pk(request, pk: number, mediaType: str) -> Response | None:
|
|
27
|
+
"""
|
|
28
|
+
A route to get the sensitive meta pk for a media type quickly.
|
|
29
|
+
|
|
30
|
+
GET api/media/sensitive-media-id/<pk>/<str:mediaType>
|
|
31
|
+
|
|
32
|
+
Args:
|
|
33
|
+
request (_type_): _description_
|
|
34
|
+
id (_type_): _description_
|
|
35
|
+
|
|
36
|
+
Returns:
|
|
37
|
+
Response | None: _description_
|
|
38
|
+
"""
|
|
39
|
+
|
|
40
|
+
if mediaType == "video":
|
|
41
|
+
video = get_object_or_404(VideoFile, pk=pk)
|
|
42
|
+
if not video.sensitive_meta:
|
|
43
|
+
return Response(
|
|
44
|
+
{"error": f"No sensitive metadata found for video {pk}"},
|
|
45
|
+
status=status.HTTP_404_NOT_FOUND,
|
|
46
|
+
)
|
|
47
|
+
sm_id = video.sensitive_meta.pk
|
|
48
|
+
return Response({"sm": sm_id})
|
|
49
|
+
if mediaType == "pdf":
|
|
50
|
+
pdf = get_object_or_404(RawPdfFile, pk=pk)
|
|
51
|
+
if not pdf.sensitive_meta:
|
|
52
|
+
return Response(
|
|
53
|
+
{"error": f"No sensitive metadata found for report {pk}"},
|
|
54
|
+
status=status.HTTP_404_NOT_FOUND,
|
|
55
|
+
)
|
|
56
|
+
sm_id = pdf.sensitive_meta.pk
|
|
57
|
+
return Response({"sm": sm_id})
|
|
58
|
+
|
|
59
|
+
|
|
60
|
+
@api_view(["GET", "PATCH"])
|
|
61
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
62
|
+
def video_sensitive_metadata(request, pk):
|
|
63
|
+
"""
|
|
64
|
+
GET /api/media/videos/<pk>/sensitive-metadata/
|
|
65
|
+
PATCH /api/media/videos/<pk>/sensitive-metadata/
|
|
66
|
+
|
|
67
|
+
Get or update sensitive metadata for a video.
|
|
68
|
+
Video-scoped: Uses sensitive meta ID to locate related sensitive metadata.
|
|
69
|
+
"""
|
|
70
|
+
sensitive_meta = get_object_or_404(SensitiveMeta, pk=pk)
|
|
71
|
+
|
|
72
|
+
# Get related sensitive metadata
|
|
73
|
+
if not sensitive_meta:
|
|
74
|
+
return Response(
|
|
75
|
+
{"error": f"No sensitive metadata found for video {pk}"},
|
|
76
|
+
status=status.HTTP_404_NOT_FOUND,
|
|
77
|
+
)
|
|
78
|
+
|
|
79
|
+
if request.method == "GET":
|
|
80
|
+
serializer = SensitiveMetaDetailSerializer(sensitive_meta)
|
|
81
|
+
return Response(serializer.data, status=status.HTTP_200_OK)
|
|
82
|
+
|
|
83
|
+
elif request.method == "PATCH":
|
|
84
|
+
serializer = SensitiveMetaUpdateSerializer(
|
|
85
|
+
sensitive_meta, data=request.data, partial=True
|
|
86
|
+
)
|
|
87
|
+
|
|
88
|
+
if serializer.is_valid():
|
|
89
|
+
updated_instance = serializer.save()
|
|
90
|
+
response_serializer = SensitiveMetaDetailSerializer(updated_instance)
|
|
91
|
+
|
|
92
|
+
return Response(
|
|
93
|
+
{
|
|
94
|
+
"message": "Sensitive metadata updated successfully",
|
|
95
|
+
"sensitive_meta": response_serializer.data,
|
|
96
|
+
"video_id": pk,
|
|
97
|
+
},
|
|
98
|
+
status=status.HTTP_200_OK,
|
|
99
|
+
)
|
|
100
|
+
|
|
101
|
+
return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
|
|
102
|
+
|
|
103
|
+
|
|
104
|
+
@api_view(["POST"])
|
|
105
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
106
|
+
@transaction.atomic
|
|
107
|
+
def video_sensitive_metadata_verify(request, pk):
|
|
108
|
+
"""
|
|
109
|
+
POST /api/media/videos/<pk>/sensitive-metadata/verify/
|
|
110
|
+
|
|
111
|
+
Update verification state for video sensitive metadata.
|
|
112
|
+
|
|
113
|
+
Expected payload:
|
|
114
|
+
{
|
|
115
|
+
"dob_verified": true,
|
|
116
|
+
"names_verified": true
|
|
117
|
+
}
|
|
118
|
+
"""
|
|
119
|
+
video = get_object_or_404(VideoFile, pk=pk)
|
|
120
|
+
|
|
121
|
+
if not video.sensitive_meta:
|
|
122
|
+
return Response(
|
|
123
|
+
{"error": f"No sensitive metadata found for video {pk}"},
|
|
124
|
+
status=status.HTTP_404_NOT_FOUND,
|
|
125
|
+
)
|
|
126
|
+
|
|
127
|
+
sensitive_meta = video.sensitive_meta
|
|
128
|
+
|
|
129
|
+
dob_verified = request.data.get("dob_verified")
|
|
130
|
+
names_verified = request.data.get("names_verified")
|
|
131
|
+
|
|
132
|
+
if dob_verified is None and names_verified is None:
|
|
133
|
+
return Response(
|
|
134
|
+
{
|
|
135
|
+
"error": "At least one of dob_verified or names_verified must be provided"
|
|
136
|
+
},
|
|
137
|
+
status=status.HTTP_400_BAD_REQUEST,
|
|
138
|
+
)
|
|
139
|
+
|
|
140
|
+
state = sensitive_meta.get_or_create_state()
|
|
141
|
+
|
|
142
|
+
if dob_verified is not None:
|
|
143
|
+
state.dob_verified = dob_verified
|
|
144
|
+
if names_verified is not None:
|
|
145
|
+
state.names_verified = names_verified
|
|
146
|
+
|
|
147
|
+
state.save()
|
|
148
|
+
|
|
149
|
+
response_serializer = SensitiveMetaDetailSerializer(sensitive_meta)
|
|
150
|
+
return Response(
|
|
151
|
+
{
|
|
152
|
+
"message": "Verification state updated successfully",
|
|
153
|
+
"sensitive_meta": response_serializer.data,
|
|
154
|
+
"video_id": pk,
|
|
155
|
+
"state_verified": state.is_verified,
|
|
156
|
+
},
|
|
157
|
+
status=status.HTTP_200_OK,
|
|
158
|
+
)
|
|
159
|
+
|
|
160
|
+
|
|
161
|
+
# === report SENSITIVE METADATA ===
|
|
162
|
+
|
|
163
|
+
|
|
164
|
+
@api_view(["GET", "PATCH"])
|
|
165
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
166
|
+
def pdf_sensitive_metadata(request, pk):
|
|
167
|
+
"""
|
|
168
|
+
GET /api/media/pdfs/<pk>/sensitive-metadata/
|
|
169
|
+
PATCH /api/media/pdfs/<pk>/sensitive-metadata/
|
|
170
|
+
|
|
171
|
+
Get or update sensitive metadata for a report.
|
|
172
|
+
report-scoped: Uses report ID to locate related sensitive metadata.
|
|
173
|
+
"""
|
|
174
|
+
sensitive_meta = get_object_or_404(SensitiveMeta, pk=pk)
|
|
175
|
+
|
|
176
|
+
# Get related sensitive metadata
|
|
177
|
+
if not sensitive_meta:
|
|
178
|
+
return Response(
|
|
179
|
+
{"error": f"No sensitive metadata found for report {pk}"},
|
|
180
|
+
status=status.HTTP_404_NOT_FOUND,
|
|
181
|
+
)
|
|
182
|
+
|
|
183
|
+
if request.method == "GET":
|
|
184
|
+
serializer = SensitiveMetaDetailSerializer(sensitive_meta)
|
|
185
|
+
return Response(serializer.data, status=status.HTTP_200_OK)
|
|
186
|
+
|
|
187
|
+
elif request.method == "PATCH":
|
|
188
|
+
serializer = SensitiveMetaUpdateSerializer(
|
|
189
|
+
sensitive_meta, data=request.data, partial=True
|
|
190
|
+
)
|
|
191
|
+
|
|
192
|
+
if serializer.is_valid():
|
|
193
|
+
updated_instance = serializer.save()
|
|
194
|
+
response_serializer = SensitiveMetaDetailSerializer(updated_instance)
|
|
195
|
+
sensitive_meta.update_from_dict(response_serializer.data)
|
|
196
|
+
logger.info("Updated sensitive metadata: %s", json.dumps(response_serializer.data))
|
|
197
|
+
return Response(
|
|
198
|
+
{
|
|
199
|
+
"message": "Sensitive metadata updated successfully",
|
|
200
|
+
"sensitive_meta": response_serializer.data,
|
|
201
|
+
"pdf_id": pk,
|
|
202
|
+
},
|
|
203
|
+
status=status.HTTP_200_OK,
|
|
204
|
+
)
|
|
205
|
+
|
|
206
|
+
return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
|
|
207
|
+
|
|
208
|
+
|
|
209
|
+
@api_view(["POST"])
|
|
210
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
211
|
+
@transaction.atomic
|
|
212
|
+
def pdf_sensitive_metadata_verify(request, pk):
|
|
213
|
+
"""
|
|
214
|
+
POST /api/media/pdfs/<pk>/sensitive-metadata/verify/
|
|
215
|
+
|
|
216
|
+
Update verification state for report sensitive metadata.
|
|
217
|
+
|
|
218
|
+
Expected payload:
|
|
219
|
+
{
|
|
220
|
+
"dob_verified": true,
|
|
221
|
+
"names_verified": true
|
|
222
|
+
}
|
|
223
|
+
"""
|
|
224
|
+
pdf = get_object_or_404(RawPdfFile, pk=pk)
|
|
225
|
+
|
|
226
|
+
if not pdf.sensitive_meta:
|
|
227
|
+
return Response(
|
|
228
|
+
{"error": f"No sensitive metadata found for report {pk}"},
|
|
229
|
+
status=status.HTTP_404_NOT_FOUND,
|
|
230
|
+
)
|
|
231
|
+
|
|
232
|
+
sensitive_meta = pdf.sensitive_meta
|
|
233
|
+
|
|
234
|
+
dob_verified = request.data.get("dob_verified")
|
|
235
|
+
names_verified = request.data.get("names_verified")
|
|
236
|
+
|
|
237
|
+
if dob_verified is None and names_verified is None:
|
|
238
|
+
return Response(
|
|
239
|
+
{
|
|
240
|
+
"error": "At least one of dob_verified or names_verified must be provided"
|
|
241
|
+
},
|
|
242
|
+
status=status.HTTP_400_BAD_REQUEST,
|
|
243
|
+
)
|
|
244
|
+
|
|
245
|
+
state = sensitive_meta.get_or_create_state()
|
|
246
|
+
|
|
247
|
+
if dob_verified is not None:
|
|
248
|
+
state.dob_verified = dob_verified
|
|
249
|
+
if names_verified is not None:
|
|
250
|
+
state.names_verified = names_verified
|
|
251
|
+
|
|
252
|
+
state.save()
|
|
253
|
+
|
|
254
|
+
response_serializer = SensitiveMetaDetailSerializer(sensitive_meta)
|
|
255
|
+
return Response(
|
|
256
|
+
{
|
|
257
|
+
"message": "Verification state updated successfully",
|
|
258
|
+
"sensitive_meta": response_serializer.data,
|
|
259
|
+
"pdf_id": pk,
|
|
260
|
+
"state_verified": state.is_verified,
|
|
261
|
+
},
|
|
262
|
+
status=status.HTTP_200_OK,
|
|
263
|
+
)
|
|
264
|
+
|
|
265
|
+
|
|
266
|
+
# === LIST ENDPOINTS (Collection-Level) ===
|
|
267
|
+
|
|
268
|
+
|
|
269
|
+
@api_view(["GET"])
|
|
270
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
271
|
+
def sensitive_metadata_list(request):
|
|
272
|
+
"""
|
|
273
|
+
GET /api/media/sensitive-metadata/
|
|
274
|
+
|
|
275
|
+
List all sensitive metadata (combined reports and Videos).
|
|
276
|
+
Supports filtering by content_type, status, etc.
|
|
277
|
+
|
|
278
|
+
Query parameters:
|
|
279
|
+
- content_type: 'pdf' | 'video' (optional)
|
|
280
|
+
- verified: Filter by verification status
|
|
281
|
+
- ordering: Sort field
|
|
282
|
+
- search: Search in patient names
|
|
283
|
+
"""
|
|
284
|
+
from endoreg_db.serializers.meta import SensitiveMetaDetailSerializer
|
|
285
|
+
|
|
286
|
+
# Get all sensitive metadata
|
|
287
|
+
queryset = SensitiveMeta.objects.select_related("state").all()
|
|
288
|
+
|
|
289
|
+
# Filter by content type
|
|
290
|
+
content_type = request.query_params.get("content_type")
|
|
291
|
+
if content_type == "pdf":
|
|
292
|
+
# Only reports - filter by existence of related reports
|
|
293
|
+
queryset = queryset.filter(raw_pdf_files__isnull=False).distinct()
|
|
294
|
+
elif content_type == "video":
|
|
295
|
+
# Only Videos - filter by existence of related video
|
|
296
|
+
queryset = queryset.filter(video_file__isnull=False).distinct()
|
|
297
|
+
|
|
298
|
+
# Filter by verification status
|
|
299
|
+
verified = request.query_params.get("verified")
|
|
300
|
+
if verified is not None:
|
|
301
|
+
verified_bool = verified.lower() in ("true", "1", "yes")
|
|
302
|
+
queryset = queryset.filter(state__is_verified=verified_bool)
|
|
303
|
+
|
|
304
|
+
# Search in patient names
|
|
305
|
+
search = request.query_params.get("search")
|
|
306
|
+
if search:
|
|
307
|
+
queryset = queryset.filter(
|
|
308
|
+
Q(patient_first_name__icontains=search)
|
|
309
|
+
| Q(patient_last_name__icontains=search)
|
|
310
|
+
)
|
|
311
|
+
|
|
312
|
+
# Ordering
|
|
313
|
+
ordering = request.query_params.get("ordering", "-id")
|
|
314
|
+
queryset = queryset.order_by(ordering)
|
|
315
|
+
|
|
316
|
+
# Pagination
|
|
317
|
+
from rest_framework.pagination import PageNumberPagination
|
|
318
|
+
|
|
319
|
+
paginator = PageNumberPagination()
|
|
320
|
+
paginator.page_size = 20
|
|
321
|
+
page = paginator.paginate_queryset(queryset, request)
|
|
322
|
+
|
|
323
|
+
if page is not None:
|
|
324
|
+
serializer = SensitiveMetaDetailSerializer(page, many=True)
|
|
325
|
+
return paginator.get_paginated_response(serializer.data)
|
|
326
|
+
|
|
327
|
+
serializer = SensitiveMetaDetailSerializer(queryset, many=True)
|
|
328
|
+
return Response(serializer.data, status=status.HTTP_200_OK)
|
|
329
|
+
|
|
330
|
+
|
|
331
|
+
@api_view(["GET"])
|
|
332
|
+
@permission_classes([EnvironmentAwarePermission])
|
|
333
|
+
def pdf_sensitive_metadata_list(request):
|
|
334
|
+
"""
|
|
335
|
+
GET /api/media/pdfs/sensitive-metadata/
|
|
336
|
+
|
|
337
|
+
List sensitive metadata for reports only.
|
|
338
|
+
Replaces legacy /api/pdf/sensitivemeta/list/
|
|
339
|
+
"""
|
|
340
|
+
from endoreg_db.serializers.meta import SensitiveMetaDetailSerializer
|
|
341
|
+
|
|
342
|
+
# Get all reports with sensitive metadata
|
|
343
|
+
queryset = (
|
|
344
|
+
SensitiveMeta.objects.select_related("state")
|
|
345
|
+
.filter(raw_pdf_files__isnull=False)
|
|
346
|
+
.distinct()
|
|
347
|
+
)
|
|
348
|
+
|
|
349
|
+
# Apply filters
|
|
350
|
+
search = request.query_params.get("search")
|
|
351
|
+
if search:
|
|
352
|
+
queryset = queryset.filter(
|
|
353
|
+
Q(patient_first_name__icontains=search)
|
|
354
|
+
| Q(patient_last_name__icontains=search)
|
|
355
|
+
)
|
|
356
|
+
|
|
357
|
+
ordering = request.query_params.get("ordering", "-id")
|
|
358
|
+
queryset = queryset.order_by(ordering)
|
|
359
|
+
|
|
360
|
+
# Pagination
|
|
361
|
+
from rest_framework.pagination import PageNumberPagination
|
|
362
|
+
|
|
363
|
+
paginator = PageNumberPagination()
|
|
364
|
+
paginator.page_size = 20
|
|
365
|
+
page = paginator.paginate_queryset(queryset, request)
|
|
366
|
+
|
|
367
|
+
if page is not None:
|
|
368
|
+
serializer = SensitiveMetaDetailSerializer(page, many=True)
|
|
369
|
+
return paginator.get_paginated_response(serializer.data)
|
|
370
|
+
|
|
371
|
+
serializer = SensitiveMetaDetailSerializer(queryset, many=True)
|
|
372
|
+
return Response(serializer.data, status=status.HTTP_200_OK)
|
|
@@ -0,0 +1,275 @@
|
|
|
1
|
+
"""
|
|
2
|
+
Video Media Management View (Phase 1.2)
|
|
3
|
+
|
|
4
|
+
Provides CRUD operations for video files including listing, detail retrieval,
|
|
5
|
+
and metadata management for the media management system.
|
|
6
|
+
|
|
7
|
+
This complements VideoStreamView which handles the actual video streaming.
|
|
8
|
+
"""
|
|
9
|
+
|
|
10
|
+
import logging
|
|
11
|
+
|
|
12
|
+
from django.db.models import Q
|
|
13
|
+
from django.http import Http404
|
|
14
|
+
from rest_framework import status
|
|
15
|
+
from rest_framework.permissions import IsAuthenticated
|
|
16
|
+
from rest_framework.response import Response
|
|
17
|
+
from rest_framework.views import APIView
|
|
18
|
+
|
|
19
|
+
from endoreg_db.models import VideoFile
|
|
20
|
+
from endoreg_db.serializers.video.video_file_detail import VideoDetailSerializer
|
|
21
|
+
from endoreg_db.serializers.video.video_file_list import VideoFileListSerializer
|
|
22
|
+
|
|
23
|
+
from endoreg_db.authz.permissions import PolicyPermission
|
|
24
|
+
|
|
25
|
+
logger = logging.getLogger(__name__)
|
|
26
|
+
|
|
27
|
+
|
|
28
|
+
class VideoMediaView(APIView):
|
|
29
|
+
"""
|
|
30
|
+
Video Media Management API for CRUD operations on video files.
|
|
31
|
+
|
|
32
|
+
Endpoints:
|
|
33
|
+
- GET /api/media/videos/ - List all videos with filtering
|
|
34
|
+
- GET /api/media/videos/{id}/ - Get video details
|
|
35
|
+
- PATCH /api/media/videos/{id}/ - Update video metadata (future)
|
|
36
|
+
- DELETE /api/media/videos/{id}/ - Delete video
|
|
37
|
+
|
|
38
|
+
Query Parameters:
|
|
39
|
+
- status: Filter by processing status (not_started, processing, done, failed, validated)
|
|
40
|
+
- search: Search in filename
|
|
41
|
+
- limit: Limit results (default: 50)
|
|
42
|
+
- offset: Pagination offset
|
|
43
|
+
|
|
44
|
+
Examples:
|
|
45
|
+
- GET /api/media/videos/?status=done&search=exam
|
|
46
|
+
- GET /api/media/videos/123/
|
|
47
|
+
|
|
48
|
+
Phase 1.2 Implementation:
|
|
49
|
+
- List and detail views implemented
|
|
50
|
+
- Filtering and search functionality
|
|
51
|
+
- Pagination support
|
|
52
|
+
- Error handling with proper HTTP status codes
|
|
53
|
+
- Integration with existing serializers
|
|
54
|
+
"""
|
|
55
|
+
|
|
56
|
+
permission_classes = [IsAuthenticated, PolicyPermission]
|
|
57
|
+
def get(self, request, pk=None):
|
|
58
|
+
"""
|
|
59
|
+
Handle GET requests for video listing or detail retrieval.
|
|
60
|
+
|
|
61
|
+
Args:
|
|
62
|
+
request: HTTP request object
|
|
63
|
+
pk: Optional video ID for detail view
|
|
64
|
+
|
|
65
|
+
Returns:
|
|
66
|
+
Response: JSON response with video data or list
|
|
67
|
+
|
|
68
|
+
Raises:
|
|
69
|
+
Http404: If specific video not found
|
|
70
|
+
"""
|
|
71
|
+
if pk is not None:
|
|
72
|
+
# Detail view
|
|
73
|
+
return self._get_video_detail(pk)
|
|
74
|
+
else:
|
|
75
|
+
# List view
|
|
76
|
+
return self._list_videos(request)
|
|
77
|
+
|
|
78
|
+
def _get_video_detail(self, pk):
|
|
79
|
+
"""
|
|
80
|
+
Get detailed information for a specific video.
|
|
81
|
+
|
|
82
|
+
Args:
|
|
83
|
+
pk: Video primary key
|
|
84
|
+
|
|
85
|
+
Returns:
|
|
86
|
+
Response: JSON response with video details
|
|
87
|
+
|
|
88
|
+
Raises:
|
|
89
|
+
Http404: If video not found
|
|
90
|
+
"""
|
|
91
|
+
try:
|
|
92
|
+
# Validate video_id is numeric
|
|
93
|
+
try:
|
|
94
|
+
video_id_int = int(pk)
|
|
95
|
+
except (ValueError, TypeError):
|
|
96
|
+
raise Http404("Invalid video ID format")
|
|
97
|
+
|
|
98
|
+
# Fetch video with related data
|
|
99
|
+
video = VideoFile.objects.select_related("state", "sensitive_meta").get(
|
|
100
|
+
pk=video_id_int
|
|
101
|
+
)
|
|
102
|
+
|
|
103
|
+
# Serialize with request context for URL generation
|
|
104
|
+
serializer = VideoDetailSerializer(video, context={"request": self.request})
|
|
105
|
+
|
|
106
|
+
return Response(serializer.data)
|
|
107
|
+
|
|
108
|
+
except VideoFile.DoesNotExist:
|
|
109
|
+
raise Http404(f"Video with ID {pk} not found")
|
|
110
|
+
|
|
111
|
+
except Exception as e:
|
|
112
|
+
logger.error(f"Unexpected error in video detail view for ID {pk}: {str(e)}")
|
|
113
|
+
return Response(
|
|
114
|
+
{"error": "Failed to retrieve video details"},
|
|
115
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR,
|
|
116
|
+
)
|
|
117
|
+
|
|
118
|
+
def _list_videos(self, request):
|
|
119
|
+
"""
|
|
120
|
+
List videos with filtering, search, and pagination.
|
|
121
|
+
|
|
122
|
+
Args:
|
|
123
|
+
request: HTTP request with query parameters
|
|
124
|
+
|
|
125
|
+
Returns:
|
|
126
|
+
Response: JSON response with paginated video list
|
|
127
|
+
"""
|
|
128
|
+
try:
|
|
129
|
+
# Start with all videos
|
|
130
|
+
queryset = VideoFile.objects.select_related("state", "sensitive_meta").all()
|
|
131
|
+
|
|
132
|
+
# Apply filters
|
|
133
|
+
queryset = self._apply_filters(queryset, request.query_params)
|
|
134
|
+
|
|
135
|
+
# Apply search
|
|
136
|
+
search = request.query_params.get("search", "").strip()
|
|
137
|
+
if search:
|
|
138
|
+
queryset = queryset.filter(Q(original_file_name__icontains=search))
|
|
139
|
+
|
|
140
|
+
# Order by upload date (newest first)
|
|
141
|
+
queryset = queryset.order_by("-uploaded_at")
|
|
142
|
+
|
|
143
|
+
# Apply pagination
|
|
144
|
+
limit = min(int(request.query_params.get("limit", 50)), 100)
|
|
145
|
+
offset = int(request.query_params.get("offset", 0))
|
|
146
|
+
|
|
147
|
+
total_count = queryset.count()
|
|
148
|
+
videos = queryset[offset : offset + limit]
|
|
149
|
+
|
|
150
|
+
# Serialize
|
|
151
|
+
serializer = VideoFileListSerializer(videos, many=True)
|
|
152
|
+
|
|
153
|
+
return Response(
|
|
154
|
+
{
|
|
155
|
+
"count": total_count,
|
|
156
|
+
"next": self._get_next_url(request, offset, limit, total_count),
|
|
157
|
+
"previous": self._get_previous_url(request, offset, limit),
|
|
158
|
+
"results": serializer.data,
|
|
159
|
+
}
|
|
160
|
+
)
|
|
161
|
+
|
|
162
|
+
except ValueError as e:
|
|
163
|
+
return Response(
|
|
164
|
+
{"error": f"Invalid query parameter: {str(e)}"},
|
|
165
|
+
status=status.HTTP_400_BAD_REQUEST,
|
|
166
|
+
)
|
|
167
|
+
|
|
168
|
+
except Exception as e:
|
|
169
|
+
logger.error(f"Unexpected error in video list view: {str(e)}")
|
|
170
|
+
return Response(
|
|
171
|
+
{"error": "Failed to retrieve video list"},
|
|
172
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR,
|
|
173
|
+
)
|
|
174
|
+
|
|
175
|
+
def _apply_filters(self, queryset, query_params):
|
|
176
|
+
"""
|
|
177
|
+
Apply status and other filters to video queryset.
|
|
178
|
+
|
|
179
|
+
Args:
|
|
180
|
+
queryset: Base queryset to filter
|
|
181
|
+
query_params: Request query parameters
|
|
182
|
+
|
|
183
|
+
Returns:
|
|
184
|
+
QuerySet: Filtered queryset
|
|
185
|
+
"""
|
|
186
|
+
status_filter = query_params.get("status", "").strip().lower()
|
|
187
|
+
|
|
188
|
+
if status_filter:
|
|
189
|
+
if status_filter == "not_started":
|
|
190
|
+
# Videos without state or with not_started status
|
|
191
|
+
queryset = queryset.filter(
|
|
192
|
+
Q(state__isnull=True)
|
|
193
|
+
| Q(
|
|
194
|
+
state__frames_extracted=False,
|
|
195
|
+
state__sensitive_meta_processed=False,
|
|
196
|
+
)
|
|
197
|
+
)
|
|
198
|
+
elif status_filter == "processing":
|
|
199
|
+
# Videos in any processing state
|
|
200
|
+
queryset = queryset.filter(
|
|
201
|
+
state__frames_extracted=True, state__sensitive_meta_processed=False
|
|
202
|
+
)
|
|
203
|
+
elif status_filter == "done_processing_anonymization":
|
|
204
|
+
# Videos with anonymization complete but not validated
|
|
205
|
+
queryset = queryset.filter(
|
|
206
|
+
state__anonymized=True, sensitive_meta__is_verified=False
|
|
207
|
+
)
|
|
208
|
+
elif status_filter == "validated":
|
|
209
|
+
# Videos with human validation complete
|
|
210
|
+
queryset = queryset.filter(
|
|
211
|
+
state__anonymized=True, sensitive_meta__is_verified=True
|
|
212
|
+
)
|
|
213
|
+
elif status_filter == "failed":
|
|
214
|
+
# Failed videos (this might need adjustment based on actual failure tracking)
|
|
215
|
+
queryset = queryset.filter(
|
|
216
|
+
state__isnull=False,
|
|
217
|
+
state__frames_extracted=False,
|
|
218
|
+
state__sensitive_meta_processed=False,
|
|
219
|
+
)
|
|
220
|
+
|
|
221
|
+
return queryset
|
|
222
|
+
|
|
223
|
+
def _get_next_url(self, request, offset, limit, total_count):
|
|
224
|
+
"""Generate next page URL for pagination."""
|
|
225
|
+
if offset + limit >= total_count:
|
|
226
|
+
return None
|
|
227
|
+
|
|
228
|
+
next_offset = offset + limit
|
|
229
|
+
return self._build_paginated_url(request, next_offset, limit)
|
|
230
|
+
|
|
231
|
+
def _get_previous_url(self, request, offset, limit):
|
|
232
|
+
"""Generate previous page URL for pagination."""
|
|
233
|
+
if offset <= 0:
|
|
234
|
+
return None
|
|
235
|
+
|
|
236
|
+
prev_offset = max(0, offset - limit)
|
|
237
|
+
return self._build_paginated_url(request, prev_offset, limit)
|
|
238
|
+
|
|
239
|
+
def _build_paginated_url(self, request, offset, limit):
|
|
240
|
+
"""Build URL with pagination parameters."""
|
|
241
|
+
params = request.query_params.copy()
|
|
242
|
+
params["offset"] = offset
|
|
243
|
+
params["limit"] = limit
|
|
244
|
+
|
|
245
|
+
base_url = request.build_absolute_uri(request.path)
|
|
246
|
+
if params:
|
|
247
|
+
return f"{base_url}?{params.urlencode()}"
|
|
248
|
+
return base_url
|
|
249
|
+
|
|
250
|
+
# Future implementation placeholders
|
|
251
|
+
def patch(self, request, pk):
|
|
252
|
+
"""
|
|
253
|
+
Update video metadata (Phase 1.2+ future enhancement).
|
|
254
|
+
|
|
255
|
+
Currently returns 501 Not Implemented.
|
|
256
|
+
"""
|
|
257
|
+
return Response(
|
|
258
|
+
{"error": "Video metadata updates not yet implemented"},
|
|
259
|
+
status=status.HTTP_501_NOT_IMPLEMENTED,
|
|
260
|
+
)
|
|
261
|
+
|
|
262
|
+
def delete(self, request, pk):
|
|
263
|
+
"""
|
|
264
|
+
Delete video file (Phase 1.2+ future enhancement).
|
|
265
|
+
|
|
266
|
+
Currently returns 501 Not Implemented.
|
|
267
|
+
Use /api/media-management/force-remove/{id}/ instead.
|
|
268
|
+
"""
|
|
269
|
+
return Response(
|
|
270
|
+
{
|
|
271
|
+
"error": "Video deletion not yet implemented",
|
|
272
|
+
"alternative": f"Use DELETE /api/media-management/force-remove/{pk}/ instead",
|
|
273
|
+
},
|
|
274
|
+
status=status.HTTP_501_NOT_IMPLEMENTED,
|
|
275
|
+
)
|