endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,372 @@
1
+ # Modern Media Framework: Sensitive Metadata Management
2
+
3
+ from django.db import transaction
4
+ from django.db.models import Q
5
+ from django.shortcuts import get_object_or_404
6
+ import json
7
+ import logging
8
+
9
+ from numpy import number
10
+ from rest_framework import status
11
+ from rest_framework.decorators import api_view, permission_classes
12
+ from rest_framework.response import Response
13
+
14
+ from endoreg_db.models import RawPdfFile, SensitiveMeta, VideoFile
15
+ from endoreg_db.serializers.meta import (
16
+ SensitiveMetaDetailSerializer,
17
+ SensitiveMetaUpdateSerializer,
18
+ )
19
+ from endoreg_db.utils.permissions import EnvironmentAwarePermission
20
+ logger = logging.getLogger(__name__)
21
+ # === VIDEO SENSITIVE METADATA ===
22
+
23
+
24
+ @api_view(["GET"])
25
+ @permission_classes([EnvironmentAwarePermission])
26
+ def get_sensitive_metadata_pk(request, pk: number, mediaType: str) -> Response | None:
27
+ """
28
+ A route to get the sensitive meta pk for a media type quickly.
29
+
30
+ GET api/media/sensitive-media-id/<pk>/<str:mediaType>
31
+
32
+ Args:
33
+ request (_type_): _description_
34
+ id (_type_): _description_
35
+
36
+ Returns:
37
+ Response | None: _description_
38
+ """
39
+
40
+ if mediaType == "video":
41
+ video = get_object_or_404(VideoFile, pk=pk)
42
+ if not video.sensitive_meta:
43
+ return Response(
44
+ {"error": f"No sensitive metadata found for video {pk}"},
45
+ status=status.HTTP_404_NOT_FOUND,
46
+ )
47
+ sm_id = video.sensitive_meta.pk
48
+ return Response({"sm": sm_id})
49
+ if mediaType == "pdf":
50
+ pdf = get_object_or_404(RawPdfFile, pk=pk)
51
+ if not pdf.sensitive_meta:
52
+ return Response(
53
+ {"error": f"No sensitive metadata found for report {pk}"},
54
+ status=status.HTTP_404_NOT_FOUND,
55
+ )
56
+ sm_id = pdf.sensitive_meta.pk
57
+ return Response({"sm": sm_id})
58
+
59
+
60
+ @api_view(["GET", "PATCH"])
61
+ @permission_classes([EnvironmentAwarePermission])
62
+ def video_sensitive_metadata(request, pk):
63
+ """
64
+ GET /api/media/videos/<pk>/sensitive-metadata/
65
+ PATCH /api/media/videos/<pk>/sensitive-metadata/
66
+
67
+ Get or update sensitive metadata for a video.
68
+ Video-scoped: Uses sensitive meta ID to locate related sensitive metadata.
69
+ """
70
+ sensitive_meta = get_object_or_404(SensitiveMeta, pk=pk)
71
+
72
+ # Get related sensitive metadata
73
+ if not sensitive_meta:
74
+ return Response(
75
+ {"error": f"No sensitive metadata found for video {pk}"},
76
+ status=status.HTTP_404_NOT_FOUND,
77
+ )
78
+
79
+ if request.method == "GET":
80
+ serializer = SensitiveMetaDetailSerializer(sensitive_meta)
81
+ return Response(serializer.data, status=status.HTTP_200_OK)
82
+
83
+ elif request.method == "PATCH":
84
+ serializer = SensitiveMetaUpdateSerializer(
85
+ sensitive_meta, data=request.data, partial=True
86
+ )
87
+
88
+ if serializer.is_valid():
89
+ updated_instance = serializer.save()
90
+ response_serializer = SensitiveMetaDetailSerializer(updated_instance)
91
+
92
+ return Response(
93
+ {
94
+ "message": "Sensitive metadata updated successfully",
95
+ "sensitive_meta": response_serializer.data,
96
+ "video_id": pk,
97
+ },
98
+ status=status.HTTP_200_OK,
99
+ )
100
+
101
+ return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
102
+
103
+
104
+ @api_view(["POST"])
105
+ @permission_classes([EnvironmentAwarePermission])
106
+ @transaction.atomic
107
+ def video_sensitive_metadata_verify(request, pk):
108
+ """
109
+ POST /api/media/videos/<pk>/sensitive-metadata/verify/
110
+
111
+ Update verification state for video sensitive metadata.
112
+
113
+ Expected payload:
114
+ {
115
+ "dob_verified": true,
116
+ "names_verified": true
117
+ }
118
+ """
119
+ video = get_object_or_404(VideoFile, pk=pk)
120
+
121
+ if not video.sensitive_meta:
122
+ return Response(
123
+ {"error": f"No sensitive metadata found for video {pk}"},
124
+ status=status.HTTP_404_NOT_FOUND,
125
+ )
126
+
127
+ sensitive_meta = video.sensitive_meta
128
+
129
+ dob_verified = request.data.get("dob_verified")
130
+ names_verified = request.data.get("names_verified")
131
+
132
+ if dob_verified is None and names_verified is None:
133
+ return Response(
134
+ {
135
+ "error": "At least one of dob_verified or names_verified must be provided"
136
+ },
137
+ status=status.HTTP_400_BAD_REQUEST,
138
+ )
139
+
140
+ state = sensitive_meta.get_or_create_state()
141
+
142
+ if dob_verified is not None:
143
+ state.dob_verified = dob_verified
144
+ if names_verified is not None:
145
+ state.names_verified = names_verified
146
+
147
+ state.save()
148
+
149
+ response_serializer = SensitiveMetaDetailSerializer(sensitive_meta)
150
+ return Response(
151
+ {
152
+ "message": "Verification state updated successfully",
153
+ "sensitive_meta": response_serializer.data,
154
+ "video_id": pk,
155
+ "state_verified": state.is_verified,
156
+ },
157
+ status=status.HTTP_200_OK,
158
+ )
159
+
160
+
161
+ # === report SENSITIVE METADATA ===
162
+
163
+
164
+ @api_view(["GET", "PATCH"])
165
+ @permission_classes([EnvironmentAwarePermission])
166
+ def pdf_sensitive_metadata(request, pk):
167
+ """
168
+ GET /api/media/pdfs/<pk>/sensitive-metadata/
169
+ PATCH /api/media/pdfs/<pk>/sensitive-metadata/
170
+
171
+ Get or update sensitive metadata for a report.
172
+ report-scoped: Uses report ID to locate related sensitive metadata.
173
+ """
174
+ sensitive_meta = get_object_or_404(SensitiveMeta, pk=pk)
175
+
176
+ # Get related sensitive metadata
177
+ if not sensitive_meta:
178
+ return Response(
179
+ {"error": f"No sensitive metadata found for report {pk}"},
180
+ status=status.HTTP_404_NOT_FOUND,
181
+ )
182
+
183
+ if request.method == "GET":
184
+ serializer = SensitiveMetaDetailSerializer(sensitive_meta)
185
+ return Response(serializer.data, status=status.HTTP_200_OK)
186
+
187
+ elif request.method == "PATCH":
188
+ serializer = SensitiveMetaUpdateSerializer(
189
+ sensitive_meta, data=request.data, partial=True
190
+ )
191
+
192
+ if serializer.is_valid():
193
+ updated_instance = serializer.save()
194
+ response_serializer = SensitiveMetaDetailSerializer(updated_instance)
195
+ sensitive_meta.update_from_dict(response_serializer.data)
196
+ logger.info("Updated sensitive metadata: %s", json.dumps(response_serializer.data))
197
+ return Response(
198
+ {
199
+ "message": "Sensitive metadata updated successfully",
200
+ "sensitive_meta": response_serializer.data,
201
+ "pdf_id": pk,
202
+ },
203
+ status=status.HTTP_200_OK,
204
+ )
205
+
206
+ return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
207
+
208
+
209
+ @api_view(["POST"])
210
+ @permission_classes([EnvironmentAwarePermission])
211
+ @transaction.atomic
212
+ def pdf_sensitive_metadata_verify(request, pk):
213
+ """
214
+ POST /api/media/pdfs/<pk>/sensitive-metadata/verify/
215
+
216
+ Update verification state for report sensitive metadata.
217
+
218
+ Expected payload:
219
+ {
220
+ "dob_verified": true,
221
+ "names_verified": true
222
+ }
223
+ """
224
+ pdf = get_object_or_404(RawPdfFile, pk=pk)
225
+
226
+ if not pdf.sensitive_meta:
227
+ return Response(
228
+ {"error": f"No sensitive metadata found for report {pk}"},
229
+ status=status.HTTP_404_NOT_FOUND,
230
+ )
231
+
232
+ sensitive_meta = pdf.sensitive_meta
233
+
234
+ dob_verified = request.data.get("dob_verified")
235
+ names_verified = request.data.get("names_verified")
236
+
237
+ if dob_verified is None and names_verified is None:
238
+ return Response(
239
+ {
240
+ "error": "At least one of dob_verified or names_verified must be provided"
241
+ },
242
+ status=status.HTTP_400_BAD_REQUEST,
243
+ )
244
+
245
+ state = sensitive_meta.get_or_create_state()
246
+
247
+ if dob_verified is not None:
248
+ state.dob_verified = dob_verified
249
+ if names_verified is not None:
250
+ state.names_verified = names_verified
251
+
252
+ state.save()
253
+
254
+ response_serializer = SensitiveMetaDetailSerializer(sensitive_meta)
255
+ return Response(
256
+ {
257
+ "message": "Verification state updated successfully",
258
+ "sensitive_meta": response_serializer.data,
259
+ "pdf_id": pk,
260
+ "state_verified": state.is_verified,
261
+ },
262
+ status=status.HTTP_200_OK,
263
+ )
264
+
265
+
266
+ # === LIST ENDPOINTS (Collection-Level) ===
267
+
268
+
269
+ @api_view(["GET"])
270
+ @permission_classes([EnvironmentAwarePermission])
271
+ def sensitive_metadata_list(request):
272
+ """
273
+ GET /api/media/sensitive-metadata/
274
+
275
+ List all sensitive metadata (combined reports and Videos).
276
+ Supports filtering by content_type, status, etc.
277
+
278
+ Query parameters:
279
+ - content_type: 'pdf' | 'video' (optional)
280
+ - verified: Filter by verification status
281
+ - ordering: Sort field
282
+ - search: Search in patient names
283
+ """
284
+ from endoreg_db.serializers.meta import SensitiveMetaDetailSerializer
285
+
286
+ # Get all sensitive metadata
287
+ queryset = SensitiveMeta.objects.select_related("state").all()
288
+
289
+ # Filter by content type
290
+ content_type = request.query_params.get("content_type")
291
+ if content_type == "pdf":
292
+ # Only reports - filter by existence of related reports
293
+ queryset = queryset.filter(raw_pdf_files__isnull=False).distinct()
294
+ elif content_type == "video":
295
+ # Only Videos - filter by existence of related video
296
+ queryset = queryset.filter(video_file__isnull=False).distinct()
297
+
298
+ # Filter by verification status
299
+ verified = request.query_params.get("verified")
300
+ if verified is not None:
301
+ verified_bool = verified.lower() in ("true", "1", "yes")
302
+ queryset = queryset.filter(state__is_verified=verified_bool)
303
+
304
+ # Search in patient names
305
+ search = request.query_params.get("search")
306
+ if search:
307
+ queryset = queryset.filter(
308
+ Q(patient_first_name__icontains=search)
309
+ | Q(patient_last_name__icontains=search)
310
+ )
311
+
312
+ # Ordering
313
+ ordering = request.query_params.get("ordering", "-id")
314
+ queryset = queryset.order_by(ordering)
315
+
316
+ # Pagination
317
+ from rest_framework.pagination import PageNumberPagination
318
+
319
+ paginator = PageNumberPagination()
320
+ paginator.page_size = 20
321
+ page = paginator.paginate_queryset(queryset, request)
322
+
323
+ if page is not None:
324
+ serializer = SensitiveMetaDetailSerializer(page, many=True)
325
+ return paginator.get_paginated_response(serializer.data)
326
+
327
+ serializer = SensitiveMetaDetailSerializer(queryset, many=True)
328
+ return Response(serializer.data, status=status.HTTP_200_OK)
329
+
330
+
331
+ @api_view(["GET"])
332
+ @permission_classes([EnvironmentAwarePermission])
333
+ def pdf_sensitive_metadata_list(request):
334
+ """
335
+ GET /api/media/pdfs/sensitive-metadata/
336
+
337
+ List sensitive metadata for reports only.
338
+ Replaces legacy /api/pdf/sensitivemeta/list/
339
+ """
340
+ from endoreg_db.serializers.meta import SensitiveMetaDetailSerializer
341
+
342
+ # Get all reports with sensitive metadata
343
+ queryset = (
344
+ SensitiveMeta.objects.select_related("state")
345
+ .filter(raw_pdf_files__isnull=False)
346
+ .distinct()
347
+ )
348
+
349
+ # Apply filters
350
+ search = request.query_params.get("search")
351
+ if search:
352
+ queryset = queryset.filter(
353
+ Q(patient_first_name__icontains=search)
354
+ | Q(patient_last_name__icontains=search)
355
+ )
356
+
357
+ ordering = request.query_params.get("ordering", "-id")
358
+ queryset = queryset.order_by(ordering)
359
+
360
+ # Pagination
361
+ from rest_framework.pagination import PageNumberPagination
362
+
363
+ paginator = PageNumberPagination()
364
+ paginator.page_size = 20
365
+ page = paginator.paginate_queryset(queryset, request)
366
+
367
+ if page is not None:
368
+ serializer = SensitiveMetaDetailSerializer(page, many=True)
369
+ return paginator.get_paginated_response(serializer.data)
370
+
371
+ serializer = SensitiveMetaDetailSerializer(queryset, many=True)
372
+ return Response(serializer.data, status=status.HTTP_200_OK)
@@ -0,0 +1,275 @@
1
+ """
2
+ Video Media Management View (Phase 1.2)
3
+
4
+ Provides CRUD operations for video files including listing, detail retrieval,
5
+ and metadata management for the media management system.
6
+
7
+ This complements VideoStreamView which handles the actual video streaming.
8
+ """
9
+
10
+ import logging
11
+
12
+ from django.db.models import Q
13
+ from django.http import Http404
14
+ from rest_framework import status
15
+ from rest_framework.permissions import IsAuthenticated
16
+ from rest_framework.response import Response
17
+ from rest_framework.views import APIView
18
+
19
+ from endoreg_db.models import VideoFile
20
+ from endoreg_db.serializers.video.video_file_detail import VideoDetailSerializer
21
+ from endoreg_db.serializers.video.video_file_list import VideoFileListSerializer
22
+
23
+ from endoreg_db.authz.permissions import PolicyPermission
24
+
25
+ logger = logging.getLogger(__name__)
26
+
27
+
28
+ class VideoMediaView(APIView):
29
+ """
30
+ Video Media Management API for CRUD operations on video files.
31
+
32
+ Endpoints:
33
+ - GET /api/media/videos/ - List all videos with filtering
34
+ - GET /api/media/videos/{id}/ - Get video details
35
+ - PATCH /api/media/videos/{id}/ - Update video metadata (future)
36
+ - DELETE /api/media/videos/{id}/ - Delete video
37
+
38
+ Query Parameters:
39
+ - status: Filter by processing status (not_started, processing, done, failed, validated)
40
+ - search: Search in filename
41
+ - limit: Limit results (default: 50)
42
+ - offset: Pagination offset
43
+
44
+ Examples:
45
+ - GET /api/media/videos/?status=done&search=exam
46
+ - GET /api/media/videos/123/
47
+
48
+ Phase 1.2 Implementation:
49
+ - List and detail views implemented
50
+ - Filtering and search functionality
51
+ - Pagination support
52
+ - Error handling with proper HTTP status codes
53
+ - Integration with existing serializers
54
+ """
55
+
56
+ permission_classes = [IsAuthenticated, PolicyPermission]
57
+ def get(self, request, pk=None):
58
+ """
59
+ Handle GET requests for video listing or detail retrieval.
60
+
61
+ Args:
62
+ request: HTTP request object
63
+ pk: Optional video ID for detail view
64
+
65
+ Returns:
66
+ Response: JSON response with video data or list
67
+
68
+ Raises:
69
+ Http404: If specific video not found
70
+ """
71
+ if pk is not None:
72
+ # Detail view
73
+ return self._get_video_detail(pk)
74
+ else:
75
+ # List view
76
+ return self._list_videos(request)
77
+
78
+ def _get_video_detail(self, pk):
79
+ """
80
+ Get detailed information for a specific video.
81
+
82
+ Args:
83
+ pk: Video primary key
84
+
85
+ Returns:
86
+ Response: JSON response with video details
87
+
88
+ Raises:
89
+ Http404: If video not found
90
+ """
91
+ try:
92
+ # Validate video_id is numeric
93
+ try:
94
+ video_id_int = int(pk)
95
+ except (ValueError, TypeError):
96
+ raise Http404("Invalid video ID format")
97
+
98
+ # Fetch video with related data
99
+ video = VideoFile.objects.select_related("state", "sensitive_meta").get(
100
+ pk=video_id_int
101
+ )
102
+
103
+ # Serialize with request context for URL generation
104
+ serializer = VideoDetailSerializer(video, context={"request": self.request})
105
+
106
+ return Response(serializer.data)
107
+
108
+ except VideoFile.DoesNotExist:
109
+ raise Http404(f"Video with ID {pk} not found")
110
+
111
+ except Exception as e:
112
+ logger.error(f"Unexpected error in video detail view for ID {pk}: {str(e)}")
113
+ return Response(
114
+ {"error": "Failed to retrieve video details"},
115
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
116
+ )
117
+
118
+ def _list_videos(self, request):
119
+ """
120
+ List videos with filtering, search, and pagination.
121
+
122
+ Args:
123
+ request: HTTP request with query parameters
124
+
125
+ Returns:
126
+ Response: JSON response with paginated video list
127
+ """
128
+ try:
129
+ # Start with all videos
130
+ queryset = VideoFile.objects.select_related("state", "sensitive_meta").all()
131
+
132
+ # Apply filters
133
+ queryset = self._apply_filters(queryset, request.query_params)
134
+
135
+ # Apply search
136
+ search = request.query_params.get("search", "").strip()
137
+ if search:
138
+ queryset = queryset.filter(Q(original_file_name__icontains=search))
139
+
140
+ # Order by upload date (newest first)
141
+ queryset = queryset.order_by("-uploaded_at")
142
+
143
+ # Apply pagination
144
+ limit = min(int(request.query_params.get("limit", 50)), 100)
145
+ offset = int(request.query_params.get("offset", 0))
146
+
147
+ total_count = queryset.count()
148
+ videos = queryset[offset : offset + limit]
149
+
150
+ # Serialize
151
+ serializer = VideoFileListSerializer(videos, many=True)
152
+
153
+ return Response(
154
+ {
155
+ "count": total_count,
156
+ "next": self._get_next_url(request, offset, limit, total_count),
157
+ "previous": self._get_previous_url(request, offset, limit),
158
+ "results": serializer.data,
159
+ }
160
+ )
161
+
162
+ except ValueError as e:
163
+ return Response(
164
+ {"error": f"Invalid query parameter: {str(e)}"},
165
+ status=status.HTTP_400_BAD_REQUEST,
166
+ )
167
+
168
+ except Exception as e:
169
+ logger.error(f"Unexpected error in video list view: {str(e)}")
170
+ return Response(
171
+ {"error": "Failed to retrieve video list"},
172
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
173
+ )
174
+
175
+ def _apply_filters(self, queryset, query_params):
176
+ """
177
+ Apply status and other filters to video queryset.
178
+
179
+ Args:
180
+ queryset: Base queryset to filter
181
+ query_params: Request query parameters
182
+
183
+ Returns:
184
+ QuerySet: Filtered queryset
185
+ """
186
+ status_filter = query_params.get("status", "").strip().lower()
187
+
188
+ if status_filter:
189
+ if status_filter == "not_started":
190
+ # Videos without state or with not_started status
191
+ queryset = queryset.filter(
192
+ Q(state__isnull=True)
193
+ | Q(
194
+ state__frames_extracted=False,
195
+ state__sensitive_meta_processed=False,
196
+ )
197
+ )
198
+ elif status_filter == "processing":
199
+ # Videos in any processing state
200
+ queryset = queryset.filter(
201
+ state__frames_extracted=True, state__sensitive_meta_processed=False
202
+ )
203
+ elif status_filter == "done_processing_anonymization":
204
+ # Videos with anonymization complete but not validated
205
+ queryset = queryset.filter(
206
+ state__anonymized=True, sensitive_meta__is_verified=False
207
+ )
208
+ elif status_filter == "validated":
209
+ # Videos with human validation complete
210
+ queryset = queryset.filter(
211
+ state__anonymized=True, sensitive_meta__is_verified=True
212
+ )
213
+ elif status_filter == "failed":
214
+ # Failed videos (this might need adjustment based on actual failure tracking)
215
+ queryset = queryset.filter(
216
+ state__isnull=False,
217
+ state__frames_extracted=False,
218
+ state__sensitive_meta_processed=False,
219
+ )
220
+
221
+ return queryset
222
+
223
+ def _get_next_url(self, request, offset, limit, total_count):
224
+ """Generate next page URL for pagination."""
225
+ if offset + limit >= total_count:
226
+ return None
227
+
228
+ next_offset = offset + limit
229
+ return self._build_paginated_url(request, next_offset, limit)
230
+
231
+ def _get_previous_url(self, request, offset, limit):
232
+ """Generate previous page URL for pagination."""
233
+ if offset <= 0:
234
+ return None
235
+
236
+ prev_offset = max(0, offset - limit)
237
+ return self._build_paginated_url(request, prev_offset, limit)
238
+
239
+ def _build_paginated_url(self, request, offset, limit):
240
+ """Build URL with pagination parameters."""
241
+ params = request.query_params.copy()
242
+ params["offset"] = offset
243
+ params["limit"] = limit
244
+
245
+ base_url = request.build_absolute_uri(request.path)
246
+ if params:
247
+ return f"{base_url}?{params.urlencode()}"
248
+ return base_url
249
+
250
+ # Future implementation placeholders
251
+ def patch(self, request, pk):
252
+ """
253
+ Update video metadata (Phase 1.2+ future enhancement).
254
+
255
+ Currently returns 501 Not Implemented.
256
+ """
257
+ return Response(
258
+ {"error": "Video metadata updates not yet implemented"},
259
+ status=status.HTTP_501_NOT_IMPLEMENTED,
260
+ )
261
+
262
+ def delete(self, request, pk):
263
+ """
264
+ Delete video file (Phase 1.2+ future enhancement).
265
+
266
+ Currently returns 501 Not Implemented.
267
+ Use /api/media-management/force-remove/{id}/ instead.
268
+ """
269
+ return Response(
270
+ {
271
+ "error": "Video deletion not yet implemented",
272
+ "alternative": f"Use DELETE /api/media-management/force-remove/{pk}/ instead",
273
+ },
274
+ status=status.HTTP_501_NOT_IMPLEMENTED,
275
+ )
@@ -0,0 +1,7 @@
1
+ from .sensitive_meta_list import SensitiveMetaListView
2
+ from .sensitive_meta_verification import SensitiveMetaVerificationView
3
+
4
+ __all__ = [
5
+ "SensitiveMetaListView",
6
+ "SensitiveMetaVerificationView",
7
+ ]