endoreg-db 0.8.9.32__py3-none-any.whl
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- endoreg_db/__init__.py +0 -0
- endoreg_db/_version.py +34 -0
- endoreg_db/admin.py +97 -0
- endoreg_db/api/serializers/finding_descriptions.py +0 -0
- endoreg_db/api/views/finding_descriptions.py +0 -0
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +17 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/authz/auth.py +78 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +20 -0
- endoreg_db/authz/middleware.py +84 -0
- endoreg_db/authz/permissions.py +138 -0
- endoreg_db/authz/policy.py +224 -0
- endoreg_db/authz/settings.py +64 -0
- endoreg_db/authz/views_auth.py +70 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +99 -0
- endoreg_db/config/__init__.py +0 -0
- endoreg_db/config/env.py +106 -0
- endoreg_db/config/settings/__init__.py +6 -0
- endoreg_db/config/settings/base.py +148 -0
- endoreg_db/config/settings/case_gen.py +32 -0
- endoreg_db/config/settings/dev.py +108 -0
- endoreg_db/config/settings/keycloak.py +177 -0
- endoreg_db/config/settings/prod.py +66 -0
- endoreg_db/config/settings/test.py +72 -0
- endoreg_db/data/__init__.py +135 -0
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/ai_model_label/label/data.yaml +88 -0
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_type/data.yaml +7 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
- endoreg_db/data/case_template/rule_value/.init +0 -0
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
- endoreg_db/data/case_template/template/base.yaml +8 -0
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
- endoreg_db/data/case_template/tmp/_rule_value +13 -0
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
- endoreg_db/data/center/data.yaml +99 -0
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/cardiovascular.yaml +37 -0
- endoreg_db/data/disease/hepatology.yaml +5 -0
- endoreg_db/data/disease/misc.yaml +5 -0
- endoreg_db/data/disease/renal.yaml +5 -0
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
- endoreg_db/data/distribution/date/patient.yaml +7 -0
- endoreg_db/data/distribution/multiple_categorical/.init +0 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscope_type/data.yaml +11 -0
- endoreg_db/data/endoscopy_processor/data.yaml +50 -0
- endoreg_db/data/event/cardiology.yaml +15 -0
- endoreg_db/data/event/neurology.yaml +14 -0
- endoreg_db/data/event/surgery.yaml +13 -0
- endoreg_db/data/event/thrombembolism.yaml +20 -0
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/examination/examinations/data.yaml +172 -0
- endoreg_db/data/examination/time/data.yaml +48 -0
- endoreg_db/data/examination/time-type/data.yaml +5 -0
- endoreg_db/data/examination/type/data.yaml +17 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/00_generic.yaml +35 -0
- endoreg_db/data/finding/00_generic_complication.yaml +9 -0
- endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
- endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
- endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
- endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
- endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
- endoreg_db/data/finding_classification/00_generic.yaml +44 -0
- endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
- endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
- endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
- endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
- endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
- endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
- endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
- endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
- endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
- endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
- endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
- endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
- endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
- endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_type/data.yaml +39 -0
- endoreg_db/data/gender/data.yaml +42 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/data.yaml +30 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/medication.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
- endoreg_db/data/lab_value/coagulation.yaml +54 -0
- endoreg_db/data/lab_value/electrolytes.yaml +228 -0
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
- endoreg_db/data/lab_value/hematology.yaml +184 -0
- endoreg_db/data/lab_value/hormones.yaml +59 -0
- endoreg_db/data/lab_value/lipids.yaml +53 -0
- endoreg_db/data/lab_value/misc.yaml +76 -0
- endoreg_db/data/lab_value/renal_function.yaml +12 -0
- endoreg_db/data/log_type/data.yaml +57 -0
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/material/material.yaml +91 -0
- endoreg_db/data/medication/anticoagulation.yaml +65 -0
- endoreg_db/data/medication/tah.yaml +70 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
- endoreg_db/data/medication_indication_type/data.yaml +11 -0
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
- endoreg_db/data/medication_intake_time/base.yaml +31 -0
- endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
- endoreg_db/data/medication_schedule/ass.yaml +12 -0
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +59 -0
- endoreg_db/data/network_device_type/data.yaml +12 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
- endoreg_db/data/pdf_type/data.yaml +46 -0
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
- endoreg_db/data/profession/data.yaml +70 -0
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
- endoreg_db/data/requirement/01_patient_data.yaml +93 -0
- endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/old/gender.yaml +0 -0
- endoreg_db/data/requirement/old/lab_value.yaml +441 -0
- endoreg_db/data/requirement/old/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
- endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
- endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set_type/data.yaml +41 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift/m2.yaml +0 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
- endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
- endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
- endoreg_db/data/unit/concentration.yaml +115 -0
- endoreg_db/data/unit/data.yaml +17 -0
- endoreg_db/data/unit/length.yaml +31 -0
- endoreg_db/data/unit/misc.yaml +20 -0
- endoreg_db/data/unit/rate.yaml +6 -0
- endoreg_db/data/unit/time.yaml +48 -0
- endoreg_db/data/unit/volume.yaml +35 -0
- endoreg_db/data/unit/weight.yaml +38 -0
- endoreg_db/data/waste/data.yaml +12 -0
- endoreg_db/exceptions.py +24 -0
- endoreg_db/export/frames/export.py +6 -0
- endoreg_db/export/frames/export_frames_with_labels.py +616 -0
- endoreg_db/factories/__init__.py +0 -0
- endoreg_db/forms/__init__.py +4 -0
- endoreg_db/forms/examination_form.py +12 -0
- endoreg_db/forms/patient_finding_intervention_form.py +40 -0
- endoreg_db/forms/patient_form.py +23 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -0
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
- endoreg_db/forms/settings/__init__.py +11 -0
- endoreg_db/forms/unit.py +7 -0
- endoreg_db/helpers/__init__.py +0 -0
- endoreg_db/helpers/count_db.py +48 -0
- endoreg_db/helpers/data_loader.py +280 -0
- endoreg_db/helpers/default_objects.py +414 -0
- endoreg_db/helpers/download_segmentation_model.py +32 -0
- endoreg_db/helpers/interact.py +1 -0
- endoreg_db/helpers/test_video_helper.py +127 -0
- endoreg_db/import_files/__init__.py +27 -0
- endoreg_db/import_files/context/__init__.py +7 -0
- endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
- endoreg_db/import_files/context/ensure_center.py +17 -0
- endoreg_db/import_files/context/file_lock.py +66 -0
- endoreg_db/import_files/context/import_context.py +42 -0
- endoreg_db/import_files/context/validate_directories.py +57 -0
- endoreg_db/import_files/file_storage/__init__.py +15 -0
- endoreg_db/import_files/file_storage/create_report_file.py +99 -0
- endoreg_db/import_files/file_storage/create_video_file.py +104 -0
- endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
- endoreg_db/import_files/file_storage/state_management.py +463 -0
- endoreg_db/import_files/file_storage/storage.py +42 -0
- endoreg_db/import_files/import_service.md +26 -0
- endoreg_db/import_files/processing/__init__.py +11 -0
- endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
- endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
- endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
- endoreg_db/import_files/pseudonymization/__init__.py +0 -0
- endoreg_db/import_files/pseudonymization/fake.py +52 -0
- endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
- endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
- endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
- endoreg_db/import_files/report_import_service.py +147 -0
- endoreg_db/import_files/video_import_service.py +154 -0
- endoreg_db/logger_conf.py +156 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +132 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
- endoreg_db/management/commands/export_frame_annot.py +196 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
- endoreg_db/management/commands/fix_video_paths.py +186 -0
- endoreg_db/management/commands/import_report.py +361 -0
- endoreg_db/management/commands/list_routes.py +20 -0
- endoreg_db/management/commands/load_ai_model_data.py +83 -0
- endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
- endoreg_db/management/commands/load_base_db_data.py +63 -0
- endoreg_db/management/commands/load_center_data.py +68 -0
- endoreg_db/management/commands/load_contraindication_data.py +39 -0
- endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
- endoreg_db/management/commands/load_disease_classification_data.py +38 -0
- endoreg_db/management/commands/load_disease_data.py +59 -0
- endoreg_db/management/commands/load_distribution_data.py +63 -0
- endoreg_db/management/commands/load_endoscope_data.py +58 -0
- endoreg_db/management/commands/load_event_data.py +39 -0
- endoreg_db/management/commands/load_examination_data.py +78 -0
- endoreg_db/management/commands/load_examination_indication_data.py +85 -0
- endoreg_db/management/commands/load_finding_data.py +115 -0
- endoreg_db/management/commands/load_gender_data.py +37 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +142 -0
- endoreg_db/management/commands/load_information_source.py +46 -0
- endoreg_db/management/commands/load_lab_value_data.py +52 -0
- endoreg_db/management/commands/load_legacy_data.py +303 -0
- endoreg_db/management/commands/load_medication_data.py +104 -0
- endoreg_db/management/commands/load_name_data.py +36 -0
- endoreg_db/management/commands/load_organ_data.py +39 -0
- endoreg_db/management/commands/load_pdf_type_data.py +58 -0
- endoreg_db/management/commands/load_profession_data.py +40 -0
- endoreg_db/management/commands/load_qualification_data.py +56 -0
- endoreg_db/management/commands/load_report_reader_flag_data.py +40 -0
- endoreg_db/management/commands/load_requirement_data.py +207 -0
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/load_risk_data.py +57 -0
- endoreg_db/management/commands/load_shift_data.py +57 -0
- endoreg_db/management/commands/load_tag_data.py +54 -0
- endoreg_db/management/commands/load_unit_data.py +40 -0
- endoreg_db/management/commands/load_user_groups.py +26 -0
- endoreg_db/management/commands/model_input.py +169 -0
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- endoreg_db/utils/check_video_files.py +175 -0
- endoreg_db/utils/cropping.py +30 -0
- endoreg_db/utils/dataloader.py +285 -0
- endoreg_db/utils/dates.py +59 -0
- endoreg_db/utils/defaults/set_default_center.py +33 -0
- endoreg_db/utils/env.py +37 -0
- endoreg_db/utils/extract_specific_frames.py +87 -0
- endoreg_db/utils/file_operations.py +70 -0
- endoreg_db/utils/fix_video_path_direct.py +157 -0
- endoreg_db/utils/frame_anonymization_utils.py +463 -0
- endoreg_db/utils/hashs.py +138 -0
- endoreg_db/utils/links/__init__.py +0 -0
- endoreg_db/utils/links/requirement_link.py +237 -0
- endoreg_db/utils/mime_types.py +0 -0
- endoreg_db/utils/names.py +82 -0
- endoreg_db/utils/ocr.py +195 -0
- endoreg_db/utils/operation_log.py +87 -0
- endoreg_db/utils/parse_and_generate_yaml.py +45 -0
- endoreg_db/utils/paths.py +159 -0
- endoreg_db/utils/permissions.py +160 -0
- endoreg_db/utils/pipelines/Readme.md +235 -0
- endoreg_db/utils/pipelines/__init__.py +0 -0
- endoreg_db/utils/pipelines/process_video_dir.py +144 -0
- endoreg_db/utils/product/__init__.py +0 -0
- endoreg_db/utils/product/sum_emissions.py +22 -0
- endoreg_db/utils/product/sum_weights.py +20 -0
- endoreg_db/utils/pydantic_models/__init__.py +5 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/requirement_helpers.py +0 -0
- endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
- endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
- endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
- endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
- endoreg_db/utils/setup_config.py +196 -0
- endoreg_db/utils/storage.py +117 -0
- endoreg_db/utils/translation.py +31 -0
- endoreg_db/utils/uuid.py +5 -0
- endoreg_db/utils/validate_endo_roi.py +33 -0
- endoreg_db/utils/validate_subcategory_dict.py +93 -0
- endoreg_db/utils/validate_video_detailed.py +415 -0
- endoreg_db/utils/video/__init__.py +30 -0
- endoreg_db/utils/video/extract_frames.py +100 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
- endoreg_db/utils/video/names.py +47 -0
- endoreg_db/utils/video/streaming_processor.py +386 -0
- endoreg_db/utils/video/video_splitter.py +105 -0
- endoreg_db/versioning.md +79 -0
- endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
- endoreg_db/views/__init__.py +157 -0
- endoreg_db/views/anonymization/__init__.py +31 -0
- endoreg_db/views/anonymization/media_management.py +486 -0
- endoreg_db/views/anonymization/overview.py +307 -0
- endoreg_db/views/anonymization/validate.py +310 -0
- endoreg_db/views/auth/__init__.py +13 -0
- endoreg_db/views/auth/keycloak.py +146 -0
- endoreg_db/views/examination/__init__.py +30 -0
- endoreg_db/views/examination/examination.py +37 -0
- endoreg_db/views/examination/examination_manifest_cache.py +26 -0
- endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
- endoreg_db/views/examination/get_finding_classifications.py +38 -0
- endoreg_db/views/examination/get_findings.py +39 -0
- endoreg_db/views/examination/get_instruments.py +19 -0
- endoreg_db/views/examination/get_interventions.py +14 -0
- endoreg_db/views/finding/__init__.py +9 -0
- endoreg_db/views/finding/finding.py +116 -0
- endoreg_db/views/finding/get_classifications.py +14 -0
- endoreg_db/views/finding/get_interventions.py +17 -0
- endoreg_db/views/finding_classification/__init__.py +13 -0
- endoreg_db/views/finding_classification/base.py +0 -0
- endoreg_db/views/finding_classification/finding_classification.py +41 -0
- endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
- endoreg_db/views/media/__init__.py +32 -0
- endoreg_db/views/media/pdf_media.py +411 -0
- endoreg_db/views/media/sensitive_metadata.py +372 -0
- endoreg_db/views/media/video_media.py +275 -0
- endoreg_db/views/meta/__init__.py +7 -0
- endoreg_db/views/meta/sensitive_meta_list.py +102 -0
- endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
- endoreg_db/views/misc/__init__.py +29 -0
- endoreg_db/views/misc/center.py +14 -0
- endoreg_db/views/misc/csrf.py +8 -0
- endoreg_db/views/misc/gender.py +15 -0
- endoreg_db/views/misc/stats.py +255 -0
- endoreg_db/views/misc/upload_views.py +241 -0
- endoreg_db/views/patient/__init__.py +3 -0
- endoreg_db/views/patient/patient.py +253 -0
- endoreg_db/views/patient_examination/__init__.py +11 -0
- endoreg_db/views/patient_examination/patient_examination.py +141 -0
- endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
- endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
- endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
- endoreg_db/views/patient_examination/video.py +228 -0
- endoreg_db/views/patient_finding/__init__.py +7 -0
- endoreg_db/views/patient_finding/base.py +0 -0
- endoreg_db/views/patient_finding/patient_finding.py +71 -0
- endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
- endoreg_db/views/patient_finding_classification/__init__.py +5 -0
- endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
- endoreg_db/views/report/__init__.py +7 -0
- endoreg_db/views/report/reimport.py +177 -0
- endoreg_db/views/report/report_stream.py +191 -0
- endoreg_db/views/requirement/__init__.py +11 -0
- endoreg_db/views/requirement/evaluate.py +278 -0
- endoreg_db/views/requirement/lookup.py +380 -0
- endoreg_db/views/requirement/lookup_store.py +183 -0
- endoreg_db/views/requirement/requirement_utils.py +87 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +266 -0
- endoreg_db/views/video/__init__.py +49 -0
- endoreg_db/views/video/ai/__init__.py +8 -0
- endoreg_db/views/video/ai/label.py +159 -0
- endoreg_db/views/video/correction.py +529 -0
- endoreg_db/views/video/reimport.py +230 -0
- endoreg_db/views/video/segments_crud.py +709 -0
- endoreg_db/views/video/video_apply_mask.py +49 -0
- endoreg_db/views/video/video_correction.py +22 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_metadata.py +101 -0
- endoreg_db/views/video/video_processing_history.py +25 -0
- endoreg_db/views/video/video_remove_frames.py +49 -0
- endoreg_db/views/video/video_stream.py +334 -0
- endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
- endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
- endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
- endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
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import logging
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import time
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from pathlib import Path
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from typing import TYPE_CHECKING, List, Optional
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from django.db import OperationalError
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from tqdm import tqdm
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if TYPE_CHECKING:
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from endoreg_db.models import VideoFile
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logger = logging.getLogger(__name__)
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def _initialize_frames(video: "VideoFile", frame_paths: Optional[List[Path]] = None):
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"""
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Initializes Frame objects in the database based on either provided existing
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frame paths or the expected frame count from the video metadata.
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If `frame_paths` is provided, Frame objects are created/updated and marked
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as `is_extracted=True`.
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If `frame_paths` is None, Frame objects are created based on `video.frame_count`
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and marked as `is_extracted=False`.
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Updates state.frames_initialized and state.frame_count.
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Uses bulk_create with ignore_conflicts=True, so it won't fail if frames already exist.
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Raises RuntimeError on failure to create/update frames or update state.
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State Transitions:
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- On Success: Sets state.frames_initialized=True, state.frame_count=N.
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- On Failure: Does not change state (error is raised).
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"""
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from endoreg_db.models import Frame
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from endoreg_db.models.media.video.video_file_frames._bulk_create_frames import (
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_bulk_create_frames,
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)
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from endoreg_db.models.media.video.video_file_frames._create_frame_object import (
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_create_frame_object,
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)
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frames_to_create = []
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num_expected_or_provided = 0
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mark_as_extracted = False
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if frame_paths:
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logger.info(
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"Initializing Frame objects based on %d provided paths for video %s.",
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len(frame_paths),
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video.video_hash,
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)
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mark_as_extracted = True
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num_expected_or_provided = len(frame_paths)
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for frame_path in tqdm(
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frame_paths,
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desc=f"Initializing Frames from Paths {video.video_hash}",
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unit="frame",
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):
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try:
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frame_number = int(frame_path.stem.split("_")[-1])
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relative_path_str = frame_path.name
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frames_to_create.append(
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_create_frame_object(
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video,
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frame_number,
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relative_path_str,
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extracted=mark_as_extracted,
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)
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)
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except (ValueError, IndexError) as e:
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logger.warning(
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"Could not parse frame number from %s: %s", frame_path.name, e
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)
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continue
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else:
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expected_frame_count = video.frame_count
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if expected_frame_count is None or expected_frame_count <= 0:
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logger.warning(
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"Cannot initialize frames for video %s: Frame count is %s.",
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video.video_hash,
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expected_frame_count,
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)
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try:
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state = video.get_or_create_state()
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state.frames_initialized = False
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state.frame_count = None
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state.save(update_fields=["frames_initialized", "frame_count"])
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except Exception as state_e:
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logger.error(
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"Failed to reset state during empty initialization for video %s: %s",
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video.video_hash,
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state_e,
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exc_info=True,
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)
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return
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logger.info(
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"Initializing %d expected Frame objects for video %s (is_extracted=False).",
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expected_frame_count,
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video.video_hash,
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)
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mark_as_extracted = False
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num_expected_or_provided = expected_frame_count
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for frame_number in tqdm(
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range(expected_frame_count),
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desc=f"Initializing Expected Frames {video.video_hash}",
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unit="frame",
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):
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relative_path_str = f"frame_{frame_number:07d}.jpg"
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frames_to_create.append(
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_create_frame_object(
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video, frame_number, relative_path_str, extracted=mark_as_extracted
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)
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)
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if frames_to_create:
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for attempt in range(5):
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try:
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_bulk_create_frames(video, frames_to_create)
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num_created_or_ignored = len(frames_to_create)
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logger.info(
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"Bulk create attempted for %d Frame objects for video %s (ignore_conflicts=True).",
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num_created_or_ignored,
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video.video_hash,
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)
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if mark_as_extracted:
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frame_numbers_to_update = [f.frame_number for f in frames_to_create]
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if frame_numbers_to_update:
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update_count = Frame.objects.filter(
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video=video,
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frame_number__in=frame_numbers_to_update,
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is_extracted=False,
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).update(is_extracted=True)
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if update_count > 0:
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logger.info(
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"Marked %d existing Frame objects as is_extracted=True for video %s.",
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update_count,
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video.video_hash,
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)
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try:
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state = video.get_or_create_state()
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state.frames_initialized = True
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state.frame_count = num_expected_or_provided
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state.save(update_fields=["frames_initialized", "frame_count"])
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logger.info(
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"Set frames_initialized=True and frame_count=%d for video %s.",
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num_expected_or_provided,
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video.video_hash,
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)
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except Exception as state_e:
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logger.error(
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"Failed to update state after frame initialization for video %s: %s",
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video.video_hash,
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state_e,
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exc_info=True,
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)
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raise RuntimeError(
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f"Failed to update state after frame initialization for video {video.video_hash}"
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) from state_e
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except OperationalError as e:
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if "database is locked" in str(e):
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logger.warning(
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"Database is locked, retrying frame initialization for video %s (attempt %d/5).",
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video.video_hash,
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attempt + 1,
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)
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time.sleep(2**attempt)
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if attempt < 4:
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continue
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else:
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raise RuntimeError(
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f"Failed to initialize frames for video {video.video_hash}."
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) from e
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logger.error(
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"Error initializing frames for video %s: %s",
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video.video_hash,
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e,
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exc_info=True,
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)
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raise RuntimeError(
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f"Failed to initialize frames for video {video.video_hash}."
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) from e
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else:
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logger.warning(
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"No valid frames found/generated to initialize for video %s.",
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video.video_hash,
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)
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try:
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state = video.get_or_create_state()
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if state.frames_initialized or state.frame_count is not None:
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state.frames_initialized = False
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state.frame_count = None
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state.save(update_fields=["frames_initialized", "frame_count"])
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except Exception as state_e:
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logger.error(
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"Failed to reset state during empty initialization for video %s: %s",
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video.video_hash,
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state_e,
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exc_info=True,
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)
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@@ -0,0 +1,228 @@
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import logging
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import os
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from typing import TYPE_CHECKING
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from django.db import transaction
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from endoreg_db.models.media.video.video_file_io import _get_frame_dir_path
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9
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+
# Assuming ffmpeg_wrapper has or will have this function
|
|
10
|
+
from endoreg_db.utils.video.ffmpeg_wrapper import (
|
|
11
|
+
extract_frame_range as ffmpeg_extract_frame_range,
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
if TYPE_CHECKING:
|
|
15
|
+
from endoreg_db.models import VideoFile
|
|
16
|
+
|
|
17
|
+
logger = logging.getLogger(__name__)
|
|
18
|
+
|
|
19
|
+
|
|
20
|
+
def _delete_frame_range(video: "VideoFile", start_frame: int, end_frame: int):
|
|
21
|
+
"""
|
|
22
|
+
Deletes frame image files within the specified range [start_frame, end_frame)
|
|
23
|
+
and updates their is_extracted status to False. Runs within the caller's transaction.
|
|
24
|
+
"""
|
|
25
|
+
|
|
26
|
+
logger.info(
|
|
27
|
+
"Deleting frame files for video %s in range [%d, %d)",
|
|
28
|
+
video.video_hash,
|
|
29
|
+
start_frame,
|
|
30
|
+
end_frame,
|
|
31
|
+
)
|
|
32
|
+
frames_to_delete = video.frames.filter(
|
|
33
|
+
frame_number__gte=start_frame, frame_number__lt=end_frame, is_extracted=True
|
|
34
|
+
)
|
|
35
|
+
|
|
36
|
+
deleted_count = 0
|
|
37
|
+
paths_to_delete = [
|
|
38
|
+
frame.file_path for frame in frames_to_delete
|
|
39
|
+
] # Get paths before potential DB changes
|
|
40
|
+
|
|
41
|
+
# Update DB first
|
|
42
|
+
update_count = frames_to_delete.update(is_extracted=False)
|
|
43
|
+
logger.info(
|
|
44
|
+
"Marked %d Frame objects as is_extracted=False for video %s range [%d, %d).",
|
|
45
|
+
update_count,
|
|
46
|
+
video.video_hash,
|
|
47
|
+
start_frame,
|
|
48
|
+
end_frame,
|
|
49
|
+
)
|
|
50
|
+
|
|
51
|
+
# Then delete files
|
|
52
|
+
for frame_path in paths_to_delete:
|
|
53
|
+
try:
|
|
54
|
+
if frame_path.exists():
|
|
55
|
+
os.remove(frame_path)
|
|
56
|
+
deleted_count += 1
|
|
57
|
+
except Exception as e:
|
|
58
|
+
# Log warning but continue; DB state is already updated.
|
|
59
|
+
logger.warning(
|
|
60
|
+
"Could not delete frame file %s for video %s: %s",
|
|
61
|
+
frame_path,
|
|
62
|
+
video.video_hash,
|
|
63
|
+
e,
|
|
64
|
+
)
|
|
65
|
+
|
|
66
|
+
logger.info(
|
|
67
|
+
"Attempted deletion of %d files for video %s range [%d, %d). Actual deleted: %d.",
|
|
68
|
+
len(paths_to_delete),
|
|
69
|
+
video.video_hash,
|
|
70
|
+
start_frame,
|
|
71
|
+
end_frame,
|
|
72
|
+
deleted_count,
|
|
73
|
+
)
|
|
74
|
+
|
|
75
|
+
|
|
76
|
+
@transaction.atomic
|
|
77
|
+
def _extract_frame_range(
|
|
78
|
+
video: "VideoFile",
|
|
79
|
+
start_frame: int,
|
|
80
|
+
end_frame: int,
|
|
81
|
+
quality: int = 2,
|
|
82
|
+
overwrite: bool = False,
|
|
83
|
+
ext="jpg",
|
|
84
|
+
verbose=False,
|
|
85
|
+
) -> bool:
|
|
86
|
+
"""
|
|
87
|
+
Extracts frames within the range [start_frame, end_frame) using ffmpeg.
|
|
88
|
+
Updates corresponding Frame objects' is_extracted flag.
|
|
89
|
+
Runs within the caller's transaction.
|
|
90
|
+
Does NOT update VideoState.frames_extracted.
|
|
91
|
+
"""
|
|
92
|
+
|
|
93
|
+
if not video.has_raw:
|
|
94
|
+
raise FileNotFoundError(
|
|
95
|
+
f"Raw video file not available for {video.video_hash}. Cannot extract frame range."
|
|
96
|
+
)
|
|
97
|
+
|
|
98
|
+
raw_file_path = video.get_raw_file_path()
|
|
99
|
+
if not raw_file_path or not raw_file_path.exists():
|
|
100
|
+
raise FileNotFoundError(
|
|
101
|
+
f"Raw video file not found at {raw_file_path} for video {video.video_hash}. Cannot extract frame range."
|
|
102
|
+
)
|
|
103
|
+
|
|
104
|
+
frame_dir = _get_frame_dir_path(video)
|
|
105
|
+
if not frame_dir:
|
|
106
|
+
raise ValueError(
|
|
107
|
+
f"Cannot determine frame directory path for video {video.video_hash}."
|
|
108
|
+
)
|
|
109
|
+
|
|
110
|
+
# Check frames within the range that might already exist
|
|
111
|
+
frames_in_range = video.frames.filter(
|
|
112
|
+
frame_number__gte=start_frame, frame_number__lt=end_frame
|
|
113
|
+
)
|
|
114
|
+
existing_extracted_in_range = frames_in_range.filter(is_extracted=True)
|
|
115
|
+
|
|
116
|
+
if existing_extracted_in_range.exists():
|
|
117
|
+
if overwrite:
|
|
118
|
+
logger.info(
|
|
119
|
+
"Overwrite=True, deleting existing frame files in range [%d, %d) for video %s before extraction.",
|
|
120
|
+
start_frame,
|
|
121
|
+
end_frame,
|
|
122
|
+
video.video_hash,
|
|
123
|
+
)
|
|
124
|
+
_delete_frame_range(video, start_frame, end_frame)
|
|
125
|
+
else:
|
|
126
|
+
logger.info(
|
|
127
|
+
"Frames already exist in range [%d, %d) for video %s and overwrite=False. Skipping extraction for this range.",
|
|
128
|
+
start_frame,
|
|
129
|
+
end_frame,
|
|
130
|
+
video.video_hash,
|
|
131
|
+
)
|
|
132
|
+
updated_count = frames_in_range.filter(is_extracted=False).update(
|
|
133
|
+
is_extracted=True
|
|
134
|
+
)
|
|
135
|
+
if updated_count > 0:
|
|
136
|
+
logger.info(
|
|
137
|
+
"Marked %d existing Frame objects in range [%d, %d) as extracted for video %s.",
|
|
138
|
+
updated_count,
|
|
139
|
+
start_frame,
|
|
140
|
+
end_frame,
|
|
141
|
+
video.video_hash,
|
|
142
|
+
)
|
|
143
|
+
return True # Indicate success as frames are considered present
|
|
144
|
+
|
|
145
|
+
frame_dir.mkdir(parents=True, exist_ok=True)
|
|
146
|
+
extracted_paths = []
|
|
147
|
+
|
|
148
|
+
try:
|
|
149
|
+
logger.info(
|
|
150
|
+
"Starting frame range extraction [%d, %d) for video %s to %s",
|
|
151
|
+
start_frame,
|
|
152
|
+
end_frame,
|
|
153
|
+
video.video_hash,
|
|
154
|
+
frame_dir,
|
|
155
|
+
)
|
|
156
|
+
extracted_paths = ffmpeg_extract_frame_range(
|
|
157
|
+
raw_file_path, frame_dir, start_frame, end_frame, quality=quality, ext=ext
|
|
158
|
+
)
|
|
159
|
+
|
|
160
|
+
logger.info(
|
|
161
|
+
"ffmpeg extraction process completed for video %s range [%d, %d). Found %d files.",
|
|
162
|
+
video.video_hash,
|
|
163
|
+
start_frame,
|
|
164
|
+
end_frame,
|
|
165
|
+
len(extracted_paths),
|
|
166
|
+
)
|
|
167
|
+
|
|
168
|
+
update_count = frames_in_range.update(is_extracted=True)
|
|
169
|
+
logger.info(
|
|
170
|
+
"Marked %d Frame objects in range [%d, %d) as is_extracted=True for video %s.",
|
|
171
|
+
update_count,
|
|
172
|
+
start_frame,
|
|
173
|
+
end_frame,
|
|
174
|
+
video.video_hash,
|
|
175
|
+
)
|
|
176
|
+
|
|
177
|
+
return True
|
|
178
|
+
|
|
179
|
+
except FileNotFoundError as err:
|
|
180
|
+
logger.error(
|
|
181
|
+
"Frame range extraction [%d, %d) failed for video %s: %s",
|
|
182
|
+
start_frame,
|
|
183
|
+
end_frame,
|
|
184
|
+
video.video_hash,
|
|
185
|
+
err,
|
|
186
|
+
exc_info=True,
|
|
187
|
+
)
|
|
188
|
+
raise
|
|
189
|
+
|
|
190
|
+
except Exception as e:
|
|
191
|
+
logger.error(
|
|
192
|
+
"Frame range extraction [%d, %d) or DB update failed for video %s: %s",
|
|
193
|
+
start_frame,
|
|
194
|
+
end_frame,
|
|
195
|
+
video.video_hash,
|
|
196
|
+
e,
|
|
197
|
+
exc_info=True,
|
|
198
|
+
)
|
|
199
|
+
|
|
200
|
+
logger.warning(
|
|
201
|
+
"Attempting file cleanup in range [%d, %d) for video %s due to extraction error.",
|
|
202
|
+
start_frame,
|
|
203
|
+
end_frame,
|
|
204
|
+
video.video_hash,
|
|
205
|
+
)
|
|
206
|
+
files_to_check = (
|
|
207
|
+
extracted_paths if "extracted_paths" in locals() and extracted_paths else []
|
|
208
|
+
)
|
|
209
|
+
if not files_to_check:
|
|
210
|
+
files_to_check = [
|
|
211
|
+
frame_dir / f"frame_{i:07d}.{ext}"
|
|
212
|
+
for i in range(start_frame, end_frame)
|
|
213
|
+
]
|
|
214
|
+
|
|
215
|
+
for potential_file in files_to_check:
|
|
216
|
+
if potential_file.exists():
|
|
217
|
+
try:
|
|
218
|
+
os.remove(potential_file)
|
|
219
|
+
except OSError as unlink_err:
|
|
220
|
+
logger.error(
|
|
221
|
+
"Failed to delete potential frame %s during cleanup: %s",
|
|
222
|
+
potential_file,
|
|
223
|
+
unlink_err,
|
|
224
|
+
)
|
|
225
|
+
|
|
226
|
+
raise RuntimeError(
|
|
227
|
+
f"Frame range extraction or update failed for video {video.video_hash} range [{start_frame}, {end_frame})."
|
|
228
|
+
) from e
|
|
@@ -0,0 +1,107 @@
|
|
|
1
|
+
import logging
|
|
2
|
+
from typing import TYPE_CHECKING, Set
|
|
3
|
+
|
|
4
|
+
from django.db import transaction
|
|
5
|
+
|
|
6
|
+
if TYPE_CHECKING:
|
|
7
|
+
from endoreg_db.models import VideoFile
|
|
8
|
+
|
|
9
|
+
logger = logging.getLogger(__name__)
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
@transaction.atomic
|
|
13
|
+
def _mark_frames_extracted_status(
|
|
14
|
+
video: "VideoFile", extracted_frame_numbers: Set[int], status: bool
|
|
15
|
+
):
|
|
16
|
+
"""
|
|
17
|
+
Bulk updates the is_extracted status for a set of frame numbers.
|
|
18
|
+
"""
|
|
19
|
+
from endoreg_db.models.media.frame import Frame
|
|
20
|
+
|
|
21
|
+
if not extracted_frame_numbers:
|
|
22
|
+
logger.warning(
|
|
23
|
+
"No frame numbers provided to update status for video %s.", video.video_hash
|
|
24
|
+
)
|
|
25
|
+
return 0
|
|
26
|
+
|
|
27
|
+
# --- Enhanced Logging ---
|
|
28
|
+
min_frame = min(extracted_frame_numbers) if extracted_frame_numbers else "N/A"
|
|
29
|
+
max_frame = max(extracted_frame_numbers) if extracted_frame_numbers else "N/A"
|
|
30
|
+
contains_zero = 0 in extracted_frame_numbers
|
|
31
|
+
logger.info(
|
|
32
|
+
"Attempting to mark %d Frame objects as is_extracted=%s for video %s. Frame numbers range: [%s-%s]. Contains frame 0: %s",
|
|
33
|
+
len(extracted_frame_numbers),
|
|
34
|
+
status,
|
|
35
|
+
video.video_hash,
|
|
36
|
+
min_frame,
|
|
37
|
+
max_frame,
|
|
38
|
+
contains_zero,
|
|
39
|
+
)
|
|
40
|
+
# --- End Enhanced Logging ---
|
|
41
|
+
|
|
42
|
+
try:
|
|
43
|
+
# Update Frame objects based on frame_number
|
|
44
|
+
# Convert set to list for potentially better compatibility with some DB backends
|
|
45
|
+
updated_count = Frame.objects.filter(
|
|
46
|
+
video=video, frame_number__in=list(extracted_frame_numbers)
|
|
47
|
+
).update(is_extracted=status)
|
|
48
|
+
|
|
49
|
+
logger.info(
|
|
50
|
+
"Database reported updating %d Frame objects to is_extracted=%s for video %s.",
|
|
51
|
+
updated_count,
|
|
52
|
+
status,
|
|
53
|
+
video.video_hash,
|
|
54
|
+
)
|
|
55
|
+
|
|
56
|
+
# Verification step
|
|
57
|
+
if updated_count != len(extracted_frame_numbers):
|
|
58
|
+
logger.warning(
|
|
59
|
+
"Mismatch during status update for video %s. Expected to update %d frames, but DB reported updating %d.",
|
|
60
|
+
video.video_hash,
|
|
61
|
+
len(extracted_frame_numbers),
|
|
62
|
+
updated_count,
|
|
63
|
+
)
|
|
64
|
+
# --- Add detailed check for frame 0 if status is True and it should have been updated ---
|
|
65
|
+
if (
|
|
66
|
+
status is True
|
|
67
|
+
and contains_zero
|
|
68
|
+
and updated_count < len(extracted_frame_numbers)
|
|
69
|
+
):
|
|
70
|
+
try:
|
|
71
|
+
# Check the status of frame 0 directly after the update attempt
|
|
72
|
+
frame_zero = Frame.objects.get(video=video, frame_number=0)
|
|
73
|
+
if not frame_zero.is_extracted:
|
|
74
|
+
logger.error(
|
|
75
|
+
"Verification check: Frame 0 (PK: %s) was NOT updated to is_extracted=True for video %s.",
|
|
76
|
+
frame_zero.pk,
|
|
77
|
+
video.video_hash,
|
|
78
|
+
)
|
|
79
|
+
else:
|
|
80
|
+
# This case should ideally not happen if updated_count < expected count, but log just in case
|
|
81
|
+
logger.info(
|
|
82
|
+
"Verification check: Frame 0 (PK: %s) IS is_extracted=True for video %s, despite count mismatch.",
|
|
83
|
+
frame_zero.pk,
|
|
84
|
+
video.video_hash,
|
|
85
|
+
)
|
|
86
|
+
except Frame.DoesNotExist:
|
|
87
|
+
logger.error(
|
|
88
|
+
"Verification check: Frame 0 does not exist for video %s during status check.",
|
|
89
|
+
video.video_hash,
|
|
90
|
+
)
|
|
91
|
+
except Exception as verify_e:
|
|
92
|
+
logger.error(
|
|
93
|
+
"Verification check: Error checking frame 0 status for video %s: %s",
|
|
94
|
+
video.video_hash,
|
|
95
|
+
verify_e,
|
|
96
|
+
)
|
|
97
|
+
# --- End detailed check ---
|
|
98
|
+
|
|
99
|
+
return updated_count
|
|
100
|
+
except Exception as e:
|
|
101
|
+
logger.error(
|
|
102
|
+
"Failed to bulk update is_extracted status for video %s: %s",
|
|
103
|
+
video.video_hash,
|
|
104
|
+
e,
|
|
105
|
+
exc_info=True,
|
|
106
|
+
)
|
|
107
|
+
raise # Re-raise to ensure transaction rollback if needed
|