endoreg-db 0.8.9.32__py3-none-any.whl
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- endoreg_db/__init__.py +0 -0
- endoreg_db/_version.py +34 -0
- endoreg_db/admin.py +97 -0
- endoreg_db/api/serializers/finding_descriptions.py +0 -0
- endoreg_db/api/views/finding_descriptions.py +0 -0
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +17 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/authz/auth.py +78 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +20 -0
- endoreg_db/authz/middleware.py +84 -0
- endoreg_db/authz/permissions.py +138 -0
- endoreg_db/authz/policy.py +224 -0
- endoreg_db/authz/settings.py +64 -0
- endoreg_db/authz/views_auth.py +70 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +99 -0
- endoreg_db/config/__init__.py +0 -0
- endoreg_db/config/env.py +106 -0
- endoreg_db/config/settings/__init__.py +6 -0
- endoreg_db/config/settings/base.py +148 -0
- endoreg_db/config/settings/case_gen.py +32 -0
- endoreg_db/config/settings/dev.py +108 -0
- endoreg_db/config/settings/keycloak.py +177 -0
- endoreg_db/config/settings/prod.py +66 -0
- endoreg_db/config/settings/test.py +72 -0
- endoreg_db/data/__init__.py +135 -0
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/ai_model_label/label/data.yaml +88 -0
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_type/data.yaml +7 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
- endoreg_db/data/case_template/rule_value/.init +0 -0
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
- endoreg_db/data/case_template/template/base.yaml +8 -0
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
- endoreg_db/data/case_template/tmp/_rule_value +13 -0
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
- endoreg_db/data/center/data.yaml +99 -0
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/cardiovascular.yaml +37 -0
- endoreg_db/data/disease/hepatology.yaml +5 -0
- endoreg_db/data/disease/misc.yaml +5 -0
- endoreg_db/data/disease/renal.yaml +5 -0
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
- endoreg_db/data/distribution/date/patient.yaml +7 -0
- endoreg_db/data/distribution/multiple_categorical/.init +0 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscope_type/data.yaml +11 -0
- endoreg_db/data/endoscopy_processor/data.yaml +50 -0
- endoreg_db/data/event/cardiology.yaml +15 -0
- endoreg_db/data/event/neurology.yaml +14 -0
- endoreg_db/data/event/surgery.yaml +13 -0
- endoreg_db/data/event/thrombembolism.yaml +20 -0
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/examination/examinations/data.yaml +172 -0
- endoreg_db/data/examination/time/data.yaml +48 -0
- endoreg_db/data/examination/time-type/data.yaml +5 -0
- endoreg_db/data/examination/type/data.yaml +17 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/00_generic.yaml +35 -0
- endoreg_db/data/finding/00_generic_complication.yaml +9 -0
- endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
- endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
- endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
- endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
- endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
- endoreg_db/data/finding_classification/00_generic.yaml +44 -0
- endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
- endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
- endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
- endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
- endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
- endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
- endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
- endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
- endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
- endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
- endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
- endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
- endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
- endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_type/data.yaml +39 -0
- endoreg_db/data/gender/data.yaml +42 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/data.yaml +30 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/medication.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
- endoreg_db/data/lab_value/coagulation.yaml +54 -0
- endoreg_db/data/lab_value/electrolytes.yaml +228 -0
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
- endoreg_db/data/lab_value/hematology.yaml +184 -0
- endoreg_db/data/lab_value/hormones.yaml +59 -0
- endoreg_db/data/lab_value/lipids.yaml +53 -0
- endoreg_db/data/lab_value/misc.yaml +76 -0
- endoreg_db/data/lab_value/renal_function.yaml +12 -0
- endoreg_db/data/log_type/data.yaml +57 -0
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/material/material.yaml +91 -0
- endoreg_db/data/medication/anticoagulation.yaml +65 -0
- endoreg_db/data/medication/tah.yaml +70 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
- endoreg_db/data/medication_indication_type/data.yaml +11 -0
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
- endoreg_db/data/medication_intake_time/base.yaml +31 -0
- endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
- endoreg_db/data/medication_schedule/ass.yaml +12 -0
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +59 -0
- endoreg_db/data/network_device_type/data.yaml +12 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
- endoreg_db/data/pdf_type/data.yaml +46 -0
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
- endoreg_db/data/profession/data.yaml +70 -0
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
- endoreg_db/data/requirement/01_patient_data.yaml +93 -0
- endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/old/gender.yaml +0 -0
- endoreg_db/data/requirement/old/lab_value.yaml +441 -0
- endoreg_db/data/requirement/old/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
- endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
- endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set_type/data.yaml +41 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift/m2.yaml +0 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
- endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
- endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
- endoreg_db/data/unit/concentration.yaml +115 -0
- endoreg_db/data/unit/data.yaml +17 -0
- endoreg_db/data/unit/length.yaml +31 -0
- endoreg_db/data/unit/misc.yaml +20 -0
- endoreg_db/data/unit/rate.yaml +6 -0
- endoreg_db/data/unit/time.yaml +48 -0
- endoreg_db/data/unit/volume.yaml +35 -0
- endoreg_db/data/unit/weight.yaml +38 -0
- endoreg_db/data/waste/data.yaml +12 -0
- endoreg_db/exceptions.py +24 -0
- endoreg_db/export/frames/export.py +6 -0
- endoreg_db/export/frames/export_frames_with_labels.py +616 -0
- endoreg_db/factories/__init__.py +0 -0
- endoreg_db/forms/__init__.py +4 -0
- endoreg_db/forms/examination_form.py +12 -0
- endoreg_db/forms/patient_finding_intervention_form.py +40 -0
- endoreg_db/forms/patient_form.py +23 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -0
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
- endoreg_db/forms/settings/__init__.py +11 -0
- endoreg_db/forms/unit.py +7 -0
- endoreg_db/helpers/__init__.py +0 -0
- endoreg_db/helpers/count_db.py +48 -0
- endoreg_db/helpers/data_loader.py +280 -0
- endoreg_db/helpers/default_objects.py +414 -0
- endoreg_db/helpers/download_segmentation_model.py +32 -0
- endoreg_db/helpers/interact.py +1 -0
- endoreg_db/helpers/test_video_helper.py +127 -0
- endoreg_db/import_files/__init__.py +27 -0
- endoreg_db/import_files/context/__init__.py +7 -0
- endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
- endoreg_db/import_files/context/ensure_center.py +17 -0
- endoreg_db/import_files/context/file_lock.py +66 -0
- endoreg_db/import_files/context/import_context.py +42 -0
- endoreg_db/import_files/context/validate_directories.py +57 -0
- endoreg_db/import_files/file_storage/__init__.py +15 -0
- endoreg_db/import_files/file_storage/create_report_file.py +99 -0
- endoreg_db/import_files/file_storage/create_video_file.py +104 -0
- endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
- endoreg_db/import_files/file_storage/state_management.py +463 -0
- endoreg_db/import_files/file_storage/storage.py +42 -0
- endoreg_db/import_files/import_service.md +26 -0
- endoreg_db/import_files/processing/__init__.py +11 -0
- endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
- endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
- endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
- endoreg_db/import_files/pseudonymization/__init__.py +0 -0
- endoreg_db/import_files/pseudonymization/fake.py +52 -0
- endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
- endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
- endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
- endoreg_db/import_files/report_import_service.py +147 -0
- endoreg_db/import_files/video_import_service.py +154 -0
- endoreg_db/logger_conf.py +156 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +132 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
- endoreg_db/management/commands/export_frame_annot.py +196 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
- endoreg_db/management/commands/fix_video_paths.py +186 -0
- endoreg_db/management/commands/import_report.py +361 -0
- endoreg_db/management/commands/list_routes.py +20 -0
- endoreg_db/management/commands/load_ai_model_data.py +83 -0
- endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
- endoreg_db/management/commands/load_base_db_data.py +63 -0
- endoreg_db/management/commands/load_center_data.py +68 -0
- endoreg_db/management/commands/load_contraindication_data.py +39 -0
- endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
- endoreg_db/management/commands/load_disease_classification_data.py +38 -0
- endoreg_db/management/commands/load_disease_data.py +59 -0
- endoreg_db/management/commands/load_distribution_data.py +63 -0
- endoreg_db/management/commands/load_endoscope_data.py +58 -0
- endoreg_db/management/commands/load_event_data.py +39 -0
- endoreg_db/management/commands/load_examination_data.py +78 -0
- endoreg_db/management/commands/load_examination_indication_data.py +85 -0
- endoreg_db/management/commands/load_finding_data.py +115 -0
- endoreg_db/management/commands/load_gender_data.py +37 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +142 -0
- endoreg_db/management/commands/load_information_source.py +46 -0
- endoreg_db/management/commands/load_lab_value_data.py +52 -0
- endoreg_db/management/commands/load_legacy_data.py +303 -0
- endoreg_db/management/commands/load_medication_data.py +104 -0
- endoreg_db/management/commands/load_name_data.py +36 -0
- endoreg_db/management/commands/load_organ_data.py +39 -0
- endoreg_db/management/commands/load_pdf_type_data.py +58 -0
- endoreg_db/management/commands/load_profession_data.py +40 -0
- endoreg_db/management/commands/load_qualification_data.py +56 -0
- endoreg_db/management/commands/load_report_reader_flag_data.py +40 -0
- endoreg_db/management/commands/load_requirement_data.py +207 -0
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/load_risk_data.py +57 -0
- endoreg_db/management/commands/load_shift_data.py +57 -0
- endoreg_db/management/commands/load_tag_data.py +54 -0
- endoreg_db/management/commands/load_unit_data.py +40 -0
- endoreg_db/management/commands/load_user_groups.py +26 -0
- endoreg_db/management/commands/model_input.py +169 -0
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- endoreg_db/utils/check_video_files.py +175 -0
- endoreg_db/utils/cropping.py +30 -0
- endoreg_db/utils/dataloader.py +285 -0
- endoreg_db/utils/dates.py +59 -0
- endoreg_db/utils/defaults/set_default_center.py +33 -0
- endoreg_db/utils/env.py +37 -0
- endoreg_db/utils/extract_specific_frames.py +87 -0
- endoreg_db/utils/file_operations.py +70 -0
- endoreg_db/utils/fix_video_path_direct.py +157 -0
- endoreg_db/utils/frame_anonymization_utils.py +463 -0
- endoreg_db/utils/hashs.py +138 -0
- endoreg_db/utils/links/__init__.py +0 -0
- endoreg_db/utils/links/requirement_link.py +237 -0
- endoreg_db/utils/mime_types.py +0 -0
- endoreg_db/utils/names.py +82 -0
- endoreg_db/utils/ocr.py +195 -0
- endoreg_db/utils/operation_log.py +87 -0
- endoreg_db/utils/parse_and_generate_yaml.py +45 -0
- endoreg_db/utils/paths.py +159 -0
- endoreg_db/utils/permissions.py +160 -0
- endoreg_db/utils/pipelines/Readme.md +235 -0
- endoreg_db/utils/pipelines/__init__.py +0 -0
- endoreg_db/utils/pipelines/process_video_dir.py +144 -0
- endoreg_db/utils/product/__init__.py +0 -0
- endoreg_db/utils/product/sum_emissions.py +22 -0
- endoreg_db/utils/product/sum_weights.py +20 -0
- endoreg_db/utils/pydantic_models/__init__.py +5 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/requirement_helpers.py +0 -0
- endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
- endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
- endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
- endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
- endoreg_db/utils/setup_config.py +196 -0
- endoreg_db/utils/storage.py +117 -0
- endoreg_db/utils/translation.py +31 -0
- endoreg_db/utils/uuid.py +5 -0
- endoreg_db/utils/validate_endo_roi.py +33 -0
- endoreg_db/utils/validate_subcategory_dict.py +93 -0
- endoreg_db/utils/validate_video_detailed.py +415 -0
- endoreg_db/utils/video/__init__.py +30 -0
- endoreg_db/utils/video/extract_frames.py +100 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
- endoreg_db/utils/video/names.py +47 -0
- endoreg_db/utils/video/streaming_processor.py +386 -0
- endoreg_db/utils/video/video_splitter.py +105 -0
- endoreg_db/versioning.md +79 -0
- endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
- endoreg_db/views/__init__.py +157 -0
- endoreg_db/views/anonymization/__init__.py +31 -0
- endoreg_db/views/anonymization/media_management.py +486 -0
- endoreg_db/views/anonymization/overview.py +307 -0
- endoreg_db/views/anonymization/validate.py +310 -0
- endoreg_db/views/auth/__init__.py +13 -0
- endoreg_db/views/auth/keycloak.py +146 -0
- endoreg_db/views/examination/__init__.py +30 -0
- endoreg_db/views/examination/examination.py +37 -0
- endoreg_db/views/examination/examination_manifest_cache.py +26 -0
- endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
- endoreg_db/views/examination/get_finding_classifications.py +38 -0
- endoreg_db/views/examination/get_findings.py +39 -0
- endoreg_db/views/examination/get_instruments.py +19 -0
- endoreg_db/views/examination/get_interventions.py +14 -0
- endoreg_db/views/finding/__init__.py +9 -0
- endoreg_db/views/finding/finding.py +116 -0
- endoreg_db/views/finding/get_classifications.py +14 -0
- endoreg_db/views/finding/get_interventions.py +17 -0
- endoreg_db/views/finding_classification/__init__.py +13 -0
- endoreg_db/views/finding_classification/base.py +0 -0
- endoreg_db/views/finding_classification/finding_classification.py +41 -0
- endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
- endoreg_db/views/media/__init__.py +32 -0
- endoreg_db/views/media/pdf_media.py +411 -0
- endoreg_db/views/media/sensitive_metadata.py +372 -0
- endoreg_db/views/media/video_media.py +275 -0
- endoreg_db/views/meta/__init__.py +7 -0
- endoreg_db/views/meta/sensitive_meta_list.py +102 -0
- endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
- endoreg_db/views/misc/__init__.py +29 -0
- endoreg_db/views/misc/center.py +14 -0
- endoreg_db/views/misc/csrf.py +8 -0
- endoreg_db/views/misc/gender.py +15 -0
- endoreg_db/views/misc/stats.py +255 -0
- endoreg_db/views/misc/upload_views.py +241 -0
- endoreg_db/views/patient/__init__.py +3 -0
- endoreg_db/views/patient/patient.py +253 -0
- endoreg_db/views/patient_examination/__init__.py +11 -0
- endoreg_db/views/patient_examination/patient_examination.py +141 -0
- endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
- endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
- endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
- endoreg_db/views/patient_examination/video.py +228 -0
- endoreg_db/views/patient_finding/__init__.py +7 -0
- endoreg_db/views/patient_finding/base.py +0 -0
- endoreg_db/views/patient_finding/patient_finding.py +71 -0
- endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
- endoreg_db/views/patient_finding_classification/__init__.py +5 -0
- endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
- endoreg_db/views/report/__init__.py +7 -0
- endoreg_db/views/report/reimport.py +177 -0
- endoreg_db/views/report/report_stream.py +191 -0
- endoreg_db/views/requirement/__init__.py +11 -0
- endoreg_db/views/requirement/evaluate.py +278 -0
- endoreg_db/views/requirement/lookup.py +380 -0
- endoreg_db/views/requirement/lookup_store.py +183 -0
- endoreg_db/views/requirement/requirement_utils.py +87 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +266 -0
- endoreg_db/views/video/__init__.py +49 -0
- endoreg_db/views/video/ai/__init__.py +8 -0
- endoreg_db/views/video/ai/label.py +159 -0
- endoreg_db/views/video/correction.py +529 -0
- endoreg_db/views/video/reimport.py +230 -0
- endoreg_db/views/video/segments_crud.py +709 -0
- endoreg_db/views/video/video_apply_mask.py +49 -0
- endoreg_db/views/video/video_correction.py +22 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_metadata.py +101 -0
- endoreg_db/views/video/video_processing_history.py +25 -0
- endoreg_db/views/video/video_remove_frames.py +49 -0
- endoreg_db/views/video/video_stream.py +334 -0
- endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
- endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
- endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
- endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
|
@@ -0,0 +1,96 @@
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1
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+
- model: endoreg_db.requirement_operator
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2
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fields:
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name: "models_match_all"
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4
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name_de: "Modelle existieren"
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5
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name_en: "Models exist"
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description: "Make sure that all the provided Foreign Key models exist."
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- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_any"
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name_de: "Mindestens ein Modell existiert"
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name_en: "At least one model exists"
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description: "Make sure that at least one of the provided Foreign Key models exist."
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- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_none"
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name_de: "Kein Modell existiert"
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name_en: "No model exists"
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description: "Make sure that none of the provided Foreign Key models exist."
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- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_n"
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name_de: " Exakt n Modelle existieren"
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name_en: "Exactly n models exist"
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description: "Make sure that exactly n of the provided Foreign Key models exist. The number n is defined using the numeric_value_min field."
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29
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+
- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_n_or_more"
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name_de: "Mindestens n Modelle existieren"
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name_en: "At least n models exist"
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34
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description: "Make sure that at least n of the provided Foreign Key models exist. The number n is defined using the numeric_value_min field."
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35
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36
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+
- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_n_or_less"
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39
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name_de: "Höchstens n Modelle existieren"
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40
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name_en: "At most n models exist"
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41
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description: "Make sure that at most n of the provided Foreign Key models exist. The number n is defined using the numeric_value_min field."
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42
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+
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43
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+
- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_count_in_range"
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46
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name_de: "Anzahl der Modelle liegt im angegebenen Bereich"
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47
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name_en: "Number of models is in the given range"
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48
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description: "Make sure that the number of provided Foreign Key models is in the given range. The range is defined using numeric_value_min and numeric_value_max."
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49
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+
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50
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+
- model: endoreg_db.requirement_operator
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fields:
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name: "models_match_any_in_timeframe"
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53
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name_de: "Mindestens ein Modell existiert im angegebenen Zeitraum"
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54
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name_en: "At least one model exists in the given timeframe"
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55
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+
description: "Make sure that at least one of the provided Foreign Key models exist and its associated date falls within the specified timeframe. Timeframe is defined by numeric_value_min, numeric_value_max, and unit on the Requirement."
|
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56
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+
|
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57
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+
- model: endoreg_db.requirement_operator
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58
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+
fields:
|
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59
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+
name: "models_match_all_in_timeframe"
|
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60
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name_de: "Modelle existieren im angegebenen Zeitraum"
|
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61
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+
name_en: "Models exist in the given timeframe"
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62
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+
description: "Make sure that all the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
|
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63
|
+
|
|
64
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+
- model: endoreg_db.requirement_operator
|
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65
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fields:
|
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66
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name: "models_match_none_in_timeframe"
|
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67
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name_de: "Kein Modell existiert im angegebenen Zeitraum"
|
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68
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+
name_en: "No model exists in the given timeframe"
|
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69
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+
description: "Make sure that none of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week)."
|
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70
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+
|
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71
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+
- model: endoreg_db.requirement_operator
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72
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fields:
|
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73
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name: "models_match_n_in_timeframe"
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74
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name_de: "Exakt n Modelle existieren im angegebenen Zeitraum"
|
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75
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+
name_en: "Exactly n models exist in the given timeframe"
|
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76
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+
description: "Make sure that exactly n of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week). The number n is defined using the numeric_value_min field."
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77
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+
|
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78
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+
- model: endoreg_db.requirement_operator
|
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79
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fields:
|
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80
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name: "models_match_n_or_more_in_timeframe"
|
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81
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name_de: "Mindestens n Modelle existieren im angegebenen Zeitraum"
|
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82
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+
name_en: "At least n models exist in the given timeframe"
|
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83
|
+
description: "Make sure that at least n of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week). The number n is defined using the numeric_value_min field."
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84
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+
|
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85
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+
- model: endoreg_db.requirement_operator
|
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86
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+
fields:
|
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87
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+
name: "models_match_n_or_less_in_timeframe"
|
|
88
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+
name_de: "Höchstens n Modelle existieren im angegebenen Zeitraum"
|
|
89
|
+
name_en: "At most n models exist in the given timeframe"
|
|
90
|
+
description: "Make sure that at most n of the provided Foreign Key models have a date within the given timeframe. The timeframe is defined using numeric_value_min and numeric_value_max and setting the unit to a fitting one (e.g. week). The number n is defined using the numeric_value_min field."
|
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91
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+
|
|
92
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+
- model: endoreg_db.requirement_operator
|
|
93
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+
fields:
|
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94
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+
name: "patient_medication_schedule_matches_template"
|
|
95
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+
description: "Checks if any PatientMedication in the input PatientMedicationSchedule matches the profile (medication, dose, unit, intake times) of any MedicationSchedule template linked to the requirement."
|
|
96
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+
evaluation_function_name: "_evaluate_patient_medication_schedule_matches_template"
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@@ -0,0 +1,36 @@
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1
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- model: endoreg_db.requirement_operator
|
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2
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fields:
|
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3
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name: "model_attribute_numeric_in_range"
|
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4
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name_de: "Modellattribut numerisch im Bereich"
|
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5
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+
name_en: "Model attribute numeric in range"
|
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6
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+
description: "
|
|
7
|
+
Checks if a numeric model attribute is within a specified range.
|
|
8
|
+
If this operator is used in a requirement, the requirement
|
|
9
|
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must define 'target_attributes', 'numeric_value_min', and 'numeric_value_max' fields.
|
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10
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+
"
|
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11
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+
|
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12
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+
- model: endoreg_db.requirement_operator
|
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13
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fields:
|
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14
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name: "model_attribute_set_any"
|
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15
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+
name_de: "Modellattribut Menge beliebig"
|
|
16
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+
name_en: "Model attribute set any"
|
|
17
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+
description: "
|
|
18
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+
Checks if a model attribute is set to any value (not null or empty).
|
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19
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+
If this operator is used in a requirement, the requirement
|
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20
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must define 'target_attributes' field.
|
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21
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+
"
|
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22
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+
|
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23
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- model: endoreg_db.requirement_operator
|
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24
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fields:
|
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25
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name: "model_attribute_is_among_values"
|
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26
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name_de: "Modellattribut ist unter Werten"
|
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27
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+
name_en: "Model attribute is among values"
|
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28
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+
description: "
|
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29
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+
Checks if a model attribute is among a specified set of values.
|
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30
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+
If this operator is used in a requirement, the requirement
|
|
31
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+
must define 'target_attributes'. In this case,
|
|
32
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+
target must contain a comma-separated list.
|
|
33
|
+
Entries without prefix are target fields to check against,
|
|
34
|
+
entries with prefix '?' define fields of the requirement to use
|
|
35
|
+
as reference during evaluation.
|
|
36
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+
"
|
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@@ -0,0 +1,65 @@
|
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1
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- models: endoreg_db.requirement_set
|
|
2
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+
fields:
|
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3
|
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name: "patient_gender_generic"
|
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4
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+
name_de: "Patientengeschlecht (männlich/weiblich)"
|
|
5
|
+
name_en: "Patient gender generic"
|
|
6
|
+
description: "Patient gender (generic)"
|
|
7
|
+
requirement_set_type: "any"
|
|
8
|
+
requirements:
|
|
9
|
+
- patient_gender_is_male
|
|
10
|
+
- patient_gender_is_female
|
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11
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+
|
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12
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+
- models: endoreg_db.requirement_set
|
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13
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fields:
|
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14
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name: "patient_names_generic"
|
|
15
|
+
name_de: "Patientennamen (Vorname, Nachname)"
|
|
16
|
+
name_en: "Patient names generic"
|
|
17
|
+
description: "Patient names (generic)"
|
|
18
|
+
requirement_set_type: "all"
|
|
19
|
+
requirements:
|
|
20
|
+
- patient_first_name #TODO
|
|
21
|
+
- patient_last_name #TODO
|
|
22
|
+
|
|
23
|
+
- models: endoreg_db.requirement_set
|
|
24
|
+
fields:
|
|
25
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+
name: "patient_dob_generic"
|
|
26
|
+
name_de: "Patienten-Geburtsdatum"
|
|
27
|
+
name_en: "Patient date of birth generic"
|
|
28
|
+
description: "Patient date of birth (generic)"
|
|
29
|
+
requirement_set_type: "all"
|
|
30
|
+
requirements:
|
|
31
|
+
- patient_date_of_birth_present #TODO
|
|
32
|
+
|
|
33
|
+
- models: endoreg_db.requirement_set
|
|
34
|
+
fields:
|
|
35
|
+
name: "colonoscopy_basic_patient_history"
|
|
36
|
+
name_de: "Koloskopie - Basis Patientenanamnese"
|
|
37
|
+
name_en: "Colonoscopy - Basic Patient History"
|
|
38
|
+
description: "Colonoscopy - Basic Patient History"
|
|
39
|
+
requirement_set_type: "all"
|
|
40
|
+
requirements:
|
|
41
|
+
- "patient_history_last_colonoscopy_known" #TODO
|
|
42
|
+
- "patient_history_previous_bowel_surgery_known" #TODO
|
|
43
|
+
|
|
44
|
+
- models: endoreg_db.requirement_set
|
|
45
|
+
fields:
|
|
46
|
+
name: "patient_age_generic"
|
|
47
|
+
name_de: "Patientenalter (18-100 Jahre)"
|
|
48
|
+
name_en: "Patient Age (18-100 years)"
|
|
49
|
+
description: "Patient age between 18 and 100 years"
|
|
50
|
+
requirement_set_type: "all"
|
|
51
|
+
requirements:
|
|
52
|
+
- "patient_age_gte_18"
|
|
53
|
+
- "patient_age_lte_100"
|
|
54
|
+
|
|
55
|
+
- models: endoreg_db.requirement_set
|
|
56
|
+
fields:
|
|
57
|
+
name: "generic_patient"
|
|
58
|
+
requirement_set_type: "all"
|
|
59
|
+
description: "Generic patient requirement set"
|
|
60
|
+
name_de: "Generische Patientenanforderung"
|
|
61
|
+
name_en: "Generic Patient Requirement"
|
|
62
|
+
links_to_sets:
|
|
63
|
+
- "patient_age_generic"
|
|
64
|
+
- "patient_gender_generic"
|
|
65
|
+
- "basic_lab_values_normal"
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
- models: endoreg_db.requirement_set
|
|
2
|
+
fields:
|
|
3
|
+
name: "basic_lab_values_normal"
|
|
4
|
+
name_de: "Basis-Labortests (Unauffällig)"
|
|
5
|
+
name_en: "Basic Lab Tests (Normal)"
|
|
6
|
+
description: "Basic lab tests (normal)"
|
|
7
|
+
requirement_set_type: "all"
|
|
8
|
+
requirements:
|
|
9
|
+
- "lab_value_hb_normal"
|
|
10
|
+
- "lab_value_leukocytes_normal"
|
|
11
|
+
- "lab_value_platelets_normal"
|
|
12
|
+
- "lab_value_creatinine_normal"
|
|
13
|
+
- "lab_value_inr_normal"
|
|
@@ -0,0 +1,46 @@
|
|
|
1
|
+
- models: endoreg_db.requirement_set
|
|
2
|
+
fields:
|
|
3
|
+
name: "endoscopy_bleeding_risk_high"
|
|
4
|
+
name_de: "Endoskopie - Blutungsrisiko: hoch"
|
|
5
|
+
name_en: "Endoscopy - Bleeding Risk: High"
|
|
6
|
+
description: "Endoskopie - Blutungsrisiko: hoch"
|
|
7
|
+
# linked_sets: [] # if this rule depends on others
|
|
8
|
+
requirement_set_type: "any"
|
|
9
|
+
requirements:
|
|
10
|
+
- "endoscopy_intervention_bleeding_risk_high"
|
|
11
|
+
|
|
12
|
+
- models: endoreg_db.requirement_set
|
|
13
|
+
fields:
|
|
14
|
+
name: "endoscopy_bleeding_risk_low"
|
|
15
|
+
name_de: "Endoskopie - Blutungsrisiko: niedrig"
|
|
16
|
+
name_en: "Endoscopy - Bleeding Risk: Low"
|
|
17
|
+
description: "Endoskopie - Blutungsrisiko: niedrig"
|
|
18
|
+
# linked_sets: [] # if this rule depends on others
|
|
19
|
+
requirement_set_type: "any"
|
|
20
|
+
requirements:
|
|
21
|
+
- "endoscopy_intervention_bleeding_risk_low"
|
|
22
|
+
links_to_sets: []
|
|
23
|
+
|
|
24
|
+
- models: endoreg_db.requirement_set
|
|
25
|
+
fields:
|
|
26
|
+
name: "patient_medication_indication_anticoagulation"
|
|
27
|
+
name_de: "Patientenmedikation - Antikoagulation"
|
|
28
|
+
name_en: "Patient Medication - Anticoagulation"
|
|
29
|
+
description: "Patient medication - anticoagulation"
|
|
30
|
+
requirement_set_type: "any"
|
|
31
|
+
requirements:
|
|
32
|
+
- "indication_non_valvular_af_apixaban_is_defined_in_requirement"
|
|
33
|
+
- "indication_after_hip_apixaban_is_defined_in_requirement"
|
|
34
|
+
- "indication_after_knee_apixaban_is_defined_in_requirement"
|
|
35
|
+
|
|
36
|
+
- models: endoreg_db.requirement_set
|
|
37
|
+
fields:
|
|
38
|
+
name: "high_bleed_risk_endoscopy_w_patient_w_anticoagulation"
|
|
39
|
+
name_de: "Endoskopie - hohes Blutungsrisiko mit generischen Patientenanforderungen"
|
|
40
|
+
name_en: "High Bleed Risk Endoscopy with Generic Patient Requirements"
|
|
41
|
+
description: "High bleed risk endoscopy with generic patient requirements"
|
|
42
|
+
requirement_set_type: "all"
|
|
43
|
+
links_to_sets:
|
|
44
|
+
- "endoscopy_bleeding_risk_high"
|
|
45
|
+
- "generic_patient"
|
|
46
|
+
- "patient_medication_indication_anticoagulation"
|
|
@@ -0,0 +1,190 @@
|
|
|
1
|
+
- models: endoreg_db.requirement_set
|
|
2
|
+
fields:
|
|
3
|
+
name: "coloreg_patient_data"
|
|
4
|
+
name_de: "Coloreg Patientendaten"
|
|
5
|
+
name_en: "Coloreg Patient Data"
|
|
6
|
+
description: "Coloreg Patient Data"
|
|
7
|
+
requirement_set_type: "all"
|
|
8
|
+
requirements:
|
|
9
|
+
- "patient_has_gender_information" # Checks if any gender is set
|
|
10
|
+
# - "patient_has_valid_gender_information" # checks if gender is male or female
|
|
11
|
+
- "patient_has_dob_information" #TODO
|
|
12
|
+
- "patient_has_names_information" #TODO
|
|
13
|
+
links_to_sets:
|
|
14
|
+
- "colonoscopy_basic_patient_history" # includes previous bowel_surgery_known and last_colonoscopy_known
|
|
15
|
+
tags: [] # not tagged as report_mask_requirement_set, only used in top level requirement set
|
|
16
|
+
|
|
17
|
+
- models: endoreg_db.requirement_set
|
|
18
|
+
fields:
|
|
19
|
+
name: "coloreg_examination_data"
|
|
20
|
+
name_de: "Coloreg Untersuchungsdaten"
|
|
21
|
+
name_en: "Coloreg Examination Data"
|
|
22
|
+
description: "Coloreg Examination Data"
|
|
23
|
+
requirement_set_type: "all"
|
|
24
|
+
requirements:
|
|
25
|
+
- "examination_has_indication" #TODO
|
|
26
|
+
- "examination_has_sedation_information" #TODO
|
|
27
|
+
- "examination_bowel_prep_recorded" #TODO
|
|
28
|
+
links_to_sets:
|
|
29
|
+
- "colonoscopy_deepest_insertion_reached_recorded" #TODO # if not cecum or terminal ileum
|
|
30
|
+
tags: []
|
|
31
|
+
|
|
32
|
+
- models: endoreg_db.requirement_set
|
|
33
|
+
fields:
|
|
34
|
+
name: "coloreg_finding_colon_polyp_location_base"
|
|
35
|
+
name_de: "Coloreg Befund Kolon Polyp Lage"
|
|
36
|
+
name_en: "Coloreg Finding Colon Polyp Location"
|
|
37
|
+
description: "Coloreg Finding Colon Polyp Exact Location"
|
|
38
|
+
requirement_set_type: "any"
|
|
39
|
+
requirements:
|
|
40
|
+
- "colon_polyp_has_location" #TODO
|
|
41
|
+
|
|
42
|
+
- models: endoreg_db.requirement_set
|
|
43
|
+
fields:
|
|
44
|
+
name: "coloreg_finding_colon_polyp_rectosigmoid_location"
|
|
45
|
+
name_de: "Coloreg Befund Kolon Polyp Rektosigmoid Lage"
|
|
46
|
+
name_en: "Coloreg Finding Colon Polyp Rectosigmoid Location"
|
|
47
|
+
description: "Coloreg Finding Colon Polyp Rectosigmoid Location"
|
|
48
|
+
requirement_set_type: "all"
|
|
49
|
+
depends_on:
|
|
50
|
+
- "coloreg_finding_colon_polyp_location_base"
|
|
51
|
+
requirements:
|
|
52
|
+
- "coloreg_finding_colon_polyp_rectosigmoid_has_location_cm" #TODO Rektosigmoid muss cm haben
|
|
53
|
+
- "coloreg_finding_colon_polyp_non_rectosigmoid_has_location_cm" #TODO nicht rektosigmoid kann cm haben
|
|
54
|
+
- "coloreg_finding_colon_polyp_non_rectosigmoid_has_location_colon_segment" #TODO nicht rektosigmoid kann Segment haben
|
|
55
|
+
|
|
56
|
+
- models: endoreg_db.requirement_set
|
|
57
|
+
fields:
|
|
58
|
+
name: "coloreg_finding_colon_polyp_size"
|
|
59
|
+
name_de: "Coloreg Befund Kolon Polyp Größe"
|
|
60
|
+
name_en: "Coloreg Finding Colon Polyp Size"
|
|
61
|
+
description: "Coloreg Finding Colon Polyp Size"
|
|
62
|
+
requirement_set_type: "any"
|
|
63
|
+
requirements:
|
|
64
|
+
- "coloreg_finding_colon_polyp_size_measured_in_mm" #TODO
|
|
65
|
+
- "coloreg_finding_colon_polyp_size_categorical" #TODO
|
|
66
|
+
|
|
67
|
+
- models: endoreg_db.requirement_set
|
|
68
|
+
fields:
|
|
69
|
+
name: "coloreg_polyp_small_morphology"
|
|
70
|
+
name_de: "Coloreg Polyp Klein Morphologie"
|
|
71
|
+
name_en: "Coloreg Polyp Small Morphology"
|
|
72
|
+
description: "Coloreg Polyp Small Morphology"
|
|
73
|
+
requirement_set_type: "all"
|
|
74
|
+
requirements:
|
|
75
|
+
- "colon_polyp_size_smaller_10_mm" # any size_cat is <6 or 6 - 9 mm or size_mm is < 10 mm
|
|
76
|
+
- "colonoscopy_default_polyp_morphology_wli" # any (paris / description)
|
|
77
|
+
|
|
78
|
+
- models: endoreg_db.requirement_set
|
|
79
|
+
fields:
|
|
80
|
+
name: "coloreg_polyp_medium_morphology"
|
|
81
|
+
name_de: "Coloreg Polyp Mittel Morphologie"
|
|
82
|
+
name_en: "Coloreg Polyp Medium Morphology"
|
|
83
|
+
description: "Coloreg Polyp Medium Morphology"
|
|
84
|
+
requirement_set_type: "all"
|
|
85
|
+
requirements:
|
|
86
|
+
- "colon_polyp_size_smaller_10_19_mm" # size cat is 10-19 mm or size_mm between 10 and 19 mm
|
|
87
|
+
- "colonoscopy_default_polyp_morphology_wli"
|
|
88
|
+
- "colonoscopy_nbi_polyp_morphology" # (nice)
|
|
89
|
+
|
|
90
|
+
- models: endoreg_db.requirement_set
|
|
91
|
+
fields:
|
|
92
|
+
name: "coloreg_polyp_large_morphology"
|
|
93
|
+
name_de: "Coloreg Polyp Groß Morphologie"
|
|
94
|
+
name_en: "Coloreg Polyp Large Morphology"
|
|
95
|
+
description: "Coloreg Polyp Large Morphology"
|
|
96
|
+
requirement_set_type: "all"
|
|
97
|
+
requirements:
|
|
98
|
+
- "colon_polyp_size_20_mm_or_larger" # size cat is 20+ mm or size_mm >=20 mm
|
|
99
|
+
- "colonoscopy_nbi_polyp_morphology" # (nice)
|
|
100
|
+
- "colonoscopy_large_polyp_morphology" # ( LST )
|
|
101
|
+
|
|
102
|
+
- models: endoreg_db.requirement_set
|
|
103
|
+
fields:
|
|
104
|
+
name: "coloreg_finding_colon_polyp_morphology"
|
|
105
|
+
name_de: "Coloreg Befund Kolon Polyp Morphologie"
|
|
106
|
+
name_en: "Coloreg Finding Colon Polyp Morphology"
|
|
107
|
+
description: "Coloreg Finding Colon Polyp Morphology"
|
|
108
|
+
requirement_set_type: "any"
|
|
109
|
+
depends_on:
|
|
110
|
+
- "coloreg_finding_colon_polyp_size"
|
|
111
|
+
links_to_sets:
|
|
112
|
+
- "coloreg_polyp_small_morphology"
|
|
113
|
+
- "coloreg_polyp_medium_morphology"
|
|
114
|
+
- "coloreg_polyp_large_morphology"
|
|
115
|
+
|
|
116
|
+
- models: endoreg_db.requirement_set
|
|
117
|
+
fields:
|
|
118
|
+
name: "coloreg_finding_colon_polyp_histology_expected_and_available"
|
|
119
|
+
name_de: "Coloreg Befund Kolon Polyp Histologie"
|
|
120
|
+
name_en: "Coloreg Finding Colon Polyp Histology"
|
|
121
|
+
description: "Coloreg Finding Colon Polyp Histology"
|
|
122
|
+
requirement_set_type: "all"
|
|
123
|
+
requirements:
|
|
124
|
+
- "colonoscopy_default_polyp_resection"
|
|
125
|
+
- "colonoscopy_default_polyp_histology"
|
|
126
|
+
|
|
127
|
+
- models: endoreg_db.requirement_set
|
|
128
|
+
fields:
|
|
129
|
+
name: "coloreg_finding_colon_polyp_histology_not_expected"
|
|
130
|
+
name_de: "Coloreg Befund Kolon Polyp Histologie"
|
|
131
|
+
name_en: "Coloreg Finding Colon Polyp Histology"
|
|
132
|
+
description: "Coloreg Finding Colon Polyp Histology"
|
|
133
|
+
requirement_set_type: "all"
|
|
134
|
+
requirements:
|
|
135
|
+
- "colonoscopy_default_polyp_no_resection"
|
|
136
|
+
# - "colonoscopy_finding_colon_polyp_no_resection_reason"
|
|
137
|
+
|
|
138
|
+
- models: endoreg_db.requirement_set
|
|
139
|
+
fields:
|
|
140
|
+
name: "coloreg_finding_colon_polyp_histology"
|
|
141
|
+
name_de: "Coloreg Befund Kolon Polyp Histologie"
|
|
142
|
+
name_en: "Coloreg Finding Colon Polyp Histology"
|
|
143
|
+
description: "Coloreg Finding Colon Polyp Histology"
|
|
144
|
+
requirement_set_type: "any"
|
|
145
|
+
links_to_sets:
|
|
146
|
+
- "coloreg_finding_colon_polyp_histology_expected_and_available"
|
|
147
|
+
- "coloreg_finding_colon_polyp_histology_not_expected"
|
|
148
|
+
|
|
149
|
+
- models: endoreg_db.requirement_set
|
|
150
|
+
fields:
|
|
151
|
+
name: "coloreg_finding_colon_polyp_base_description"
|
|
152
|
+
name_de: "Coloreg Befund Kolon Polyp"
|
|
153
|
+
name_en: "Coloreg Finding Colon Polyp"
|
|
154
|
+
description: "Coloreg Finding Colon Polyp"
|
|
155
|
+
requirement_set_type: "all"
|
|
156
|
+
requirements: []
|
|
157
|
+
links_to_sets:
|
|
158
|
+
- "coloreg_finding_colon_polyp_size"
|
|
159
|
+
- "coloreg_finding_colon_polyp_location_base"
|
|
160
|
+
- "coloreg_finding_colon_polyp_rectosigmoid_location"
|
|
161
|
+
- "coloreg_finding_colon_polyp_morphology"
|
|
162
|
+
- "coloreg_finding_colon_polyp_histology"
|
|
163
|
+
tags: []
|
|
164
|
+
|
|
165
|
+
- models: endoreg_db.requirement_set
|
|
166
|
+
fields:
|
|
167
|
+
name: "coloreg_finding_data_complete"
|
|
168
|
+
name_de: "Coloreg Befund Kolon Polyp Komplett"
|
|
169
|
+
name_en: "Coloreg Finding Colon Polyp Complete"
|
|
170
|
+
description: "Coloreg Finding Colon Polyp Complete"
|
|
171
|
+
requirement_set_type: "all"
|
|
172
|
+
links_to_sets:
|
|
173
|
+
- "coloreg_finding_colon_polyp_base_description"
|
|
174
|
+
tags: []
|
|
175
|
+
|
|
176
|
+
- models: endoreg_db.requirement_set
|
|
177
|
+
fields:
|
|
178
|
+
name: "coloreg_colonoscopy_report_complete"
|
|
179
|
+
name_de: "Koloskopie Coloreg"
|
|
180
|
+
name_en: "Colonoscopy Coloreg"
|
|
181
|
+
description: "Colonoscopy Coloreg"
|
|
182
|
+
requirement_set_type: "all"
|
|
183
|
+
links_to_sets:
|
|
184
|
+
- "coloreg_patient_data"
|
|
185
|
+
- "coloreg_examination_data"
|
|
186
|
+
- "coloreg_finding_data_complete"
|
|
187
|
+
tags:
|
|
188
|
+
- "report_mask_requirement_set"
|
|
189
|
+
reqset_exam_links:
|
|
190
|
+
- "colonoscopy_req_sets"
|
|
@@ -0,0 +1,109 @@
|
|
|
1
|
+
- models: endoreg_db.requirement_set
|
|
2
|
+
fields:
|
|
3
|
+
name: "coloreg_patient_data"
|
|
4
|
+
name_de: "Coloreg Patientendaten"
|
|
5
|
+
name_en: "Coloreg Patient Data"
|
|
6
|
+
description: "Coloreg Patient Data"
|
|
7
|
+
requirement_set_type: "all"
|
|
8
|
+
requirements: []
|
|
9
|
+
links_to_sets:
|
|
10
|
+
- "patient_gender_generic"
|
|
11
|
+
- "patient_names_generic"
|
|
12
|
+
- "patient_dob_generic"
|
|
13
|
+
- "colonoscopy_basic_patient_history" # includes previous bowel_surgery_known and last_colonoscopy_known
|
|
14
|
+
tags: [] # not tagged as report_mask_requirement_set, only used in top level requirement set
|
|
15
|
+
|
|
16
|
+
- models: endoreg_db.requirement_set
|
|
17
|
+
fields:
|
|
18
|
+
name: "coloreg_examination_data"
|
|
19
|
+
name_de: "Coloreg Untersuchungsdaten"
|
|
20
|
+
name_en: "Coloreg Examination Data"
|
|
21
|
+
description: "Coloreg Examination Data"
|
|
22
|
+
requirement_set_type: "all"
|
|
23
|
+
requirements:
|
|
24
|
+
- "examination_has_indication" #TODO
|
|
25
|
+
- "examination_has_sedation_information" #TODO
|
|
26
|
+
- "examination_bowel_prep_recorded" #TODO
|
|
27
|
+
links_to_sets:
|
|
28
|
+
- "colonoscopy_deepest_insertion_reached_recorded" #TODO # if not cecum or terminal ileum
|
|
29
|
+
tags: []
|
|
30
|
+
|
|
31
|
+
- models: endoreg_db.requirement_set
|
|
32
|
+
fields:
|
|
33
|
+
name: "coloreg_finding_colon_polyp_location"
|
|
34
|
+
name_de: "Coloreg Befund Kolon Polyp Lage"
|
|
35
|
+
name_en: "Coloreg Finding Colon Polyp Location"
|
|
36
|
+
description: "Coloreg Finding Colon Polyp Exact Location"
|
|
37
|
+
requirement_set_type: "any"
|
|
38
|
+
requirements:
|
|
39
|
+
- "coloreg_finding_colon_polyp_rectosigmoid_has_location_distance_from_anal_verge" #TODO
|
|
40
|
+
- "coloreg_finding_colon_polyp_non_rectosigmoid_has_location_distance_from_anal_verge" #TODO
|
|
41
|
+
- "coloreg_finding_colon_polyp_non_rectosigmoid_has_location_colon_segment" #TODO
|
|
42
|
+
|
|
43
|
+
- models: endoreg_db.requirement_set
|
|
44
|
+
fields:
|
|
45
|
+
name: "coloreg_finding_colon_polyp_size"
|
|
46
|
+
name_de: "Coloreg Befund Kolon Polyp Größe"
|
|
47
|
+
name_en: "Coloreg Finding Colon Polyp Size"
|
|
48
|
+
description: "Coloreg Finding Colon Polyp Size"
|
|
49
|
+
requirement_set_type: "any"
|
|
50
|
+
requirements:
|
|
51
|
+
- "coloreg_finding_colon_polyp_size_measured_in_mm" #TODO
|
|
52
|
+
- "coloreg_finding_colon_polyp_size_categorical" #TODO
|
|
53
|
+
|
|
54
|
+
- models: endoreg_db.requirement_set
|
|
55
|
+
fields:
|
|
56
|
+
name: "coloreg_finding_colon_polyp_small_base"
|
|
57
|
+
name_de: "Coloreg Befund Kolon Polyp Klein"
|
|
58
|
+
name_en: "Coloreg Finding Colon Polyp Small"
|
|
59
|
+
description: "Coloreg Finding Colon Polyp Small"
|
|
60
|
+
requirement_set_type: "all"
|
|
61
|
+
requirements:
|
|
62
|
+
- "coloreg_finding_colon_polyp_size_smaller_10_mm" #TODO any; size_cat or size_mm
|
|
63
|
+
- "coloreg_finding_colon_polyp_location" # either location_categorical or location_cm (any)
|
|
64
|
+
- "colonoscopy_default_polyp_morphology_wli" # any (paris / description)
|
|
65
|
+
- "colonoscopy_default_polyp_histology" # all
|
|
66
|
+
|
|
67
|
+
- models: endoreg_db.requirement_set
|
|
68
|
+
fields:
|
|
69
|
+
name: "coloreg_finding_colon_polyp_medium_base"
|
|
70
|
+
name_de: "Coloreg Befund Kolon Polyp Mittel"
|
|
71
|
+
name_en: "Coloreg Finding Colon Polyp Medium"
|
|
72
|
+
description: "Coloreg Finding Colon Polyp Medium"
|
|
73
|
+
requirement_set_type: "all"
|
|
74
|
+
requirements:
|
|
75
|
+
- "coloreg_finding_colon_polyp_size_between_10_and_19_mm" #TODO size >=10mm
|
|
76
|
+
- "coloreg_finding_colon_polyp_location"
|
|
77
|
+
- "colonoscopy_default_polyp_morphology_wli"
|
|
78
|
+
- "colonoscopy_advanced_polyp_morphology"
|
|
79
|
+
- "colonoscopy_default_polyp_histology"
|
|
80
|
+
|
|
81
|
+
- models: endoreg_db.requirement_set
|
|
82
|
+
fields:
|
|
83
|
+
name: "coloreg_finding_colon_polyp_base_description"
|
|
84
|
+
name_de: "Coloreg Befund Kolon Polyp"
|
|
85
|
+
name_en: "Coloreg Finding Colon Polyp"
|
|
86
|
+
description: "Coloreg Finding Colon Polyp"
|
|
87
|
+
requirement_set_type: "any"
|
|
88
|
+
requirements: []
|
|
89
|
+
links_to_sets:
|
|
90
|
+
- "coloreg_finding_colon_polyp_small_base" #TODO size <10mm, requires size, location, paris / description, histology
|
|
91
|
+
- "coloreg_finding_colon_polyp_medium_base" #TODO size >=10mm, requires size, location, paris / description, advanced morphology, histology
|
|
92
|
+
- "coloreg_finding_colon_polyp_large_base" #TODO size >=20mm, requires size, location, LST / description, advanced morphology, histology
|
|
93
|
+
tags: []
|
|
94
|
+
|
|
95
|
+
- models: endoreg_db.requirement_set
|
|
96
|
+
fields:
|
|
97
|
+
name: "colonoscopy_coloreg"
|
|
98
|
+
name_de: "Koloskopie Coloreg"
|
|
99
|
+
name_en: "Colonoscopy Coloreg"
|
|
100
|
+
description: "Colonoscopy Coloreg"
|
|
101
|
+
requirement_set_type: "all"
|
|
102
|
+
links_to_sets:
|
|
103
|
+
- "coloreg_patient_data"
|
|
104
|
+
- "coloreg_examination_data"
|
|
105
|
+
- "coloreg_finding_colon_polyp_base_description"
|
|
106
|
+
tags:
|
|
107
|
+
- "report_mask_requirement_set"
|
|
108
|
+
reqset_exam_links:
|
|
109
|
+
- "colonoscopy_req_sets"
|
|
@@ -0,0 +1,57 @@
|
|
|
1
|
+
|
|
2
|
+
|
|
3
|
+
- models: endoreg_db.requirement_set
|
|
4
|
+
fields:
|
|
5
|
+
name: "colonoscopy_austria_screening_finding_polyp_required_classifications"
|
|
6
|
+
name_de: "Vorsorge Koloskopie Österreich: Polyp"
|
|
7
|
+
requirement_set_type: "all"
|
|
8
|
+
links_to_sets: []
|
|
9
|
+
requirements:
|
|
10
|
+
- "colon_austria_screening_polyp_size"
|
|
11
|
+
- "colonoscopy_austria_screening_polyp_location"
|
|
12
|
+
- "colonoscopy_austria_screening_polyp_histology"
|
|
13
|
+
|
|
14
|
+
- models: endoreg_db.requirement_set
|
|
15
|
+
fields:
|
|
16
|
+
name: "colonoscopy_austria_screening_examination_complete"
|
|
17
|
+
requirement_set_type: "any"
|
|
18
|
+
requirements:
|
|
19
|
+
- "colonoscopy_austria_screening_examination_cecum_visualized"
|
|
20
|
+
- "colonoscopy_austria_screening_examination_reason_incomplete"
|
|
21
|
+
|
|
22
|
+
- models: endoreg_db.requirement_set
|
|
23
|
+
fields:
|
|
24
|
+
name: "colonoscopy_austria_screening_examination_required_findings"
|
|
25
|
+
links_to_sets:
|
|
26
|
+
- "colonoscopy_austria_screening_examination_complete"
|
|
27
|
+
requirement_set_type: "all"
|
|
28
|
+
requirements:
|
|
29
|
+
- "colonoscopy_austria_screening_bowel_prep"
|
|
30
|
+
- "colonoscopy_austria_screening_sedation"
|
|
31
|
+
|
|
32
|
+
- models: endoreg_db.requirement_set
|
|
33
|
+
fields:
|
|
34
|
+
name: "colonoscopy_austria_screening_required_patient_information"
|
|
35
|
+
name_de: "Vorsorge Koloskopie Österreich: Patienteninformation"
|
|
36
|
+
requirement_set_type: "all"
|
|
37
|
+
links_to_sets:
|
|
38
|
+
- "patient_gender_generic"
|
|
39
|
+
- "patient_age_generic"
|
|
40
|
+
|
|
41
|
+
- models: endoreg_db.requirement_set
|
|
42
|
+
fields:
|
|
43
|
+
name: "colonoscopy_austria_screening_qa"
|
|
44
|
+
name_de: "Vorsorge Koloskopie Österreich QA"
|
|
45
|
+
name_en: "Colonoscopy Austria Screening QA"
|
|
46
|
+
description: "Colonoscopy Austria Screening QA"
|
|
47
|
+
requirement_set_type: "all"
|
|
48
|
+
links_to_sets:
|
|
49
|
+
- "colonoscopy_austria_screening_finding_polyp_required_classifications"
|
|
50
|
+
- "colonoscopy_austria_screening_required_patient_information"
|
|
51
|
+
- "colonoscopy_austria_screening_examination_required_findings"
|
|
52
|
+
tags:
|
|
53
|
+
- "report_mask_requirement_set"
|
|
54
|
+
- "colonoscopy_austria_screening"
|
|
55
|
+
reqset_exam_links:
|
|
56
|
+
- "colonoscopy_austria_req_sets"
|
|
57
|
+
- "colonoscopy_req_sets"
|
|
@@ -0,0 +1,41 @@
|
|
|
1
|
+
- model: endoreg_db.requirement_set_type
|
|
2
|
+
fields:
|
|
3
|
+
name: "all"
|
|
4
|
+
name_de: "alle"
|
|
5
|
+
name_en: "all"
|
|
6
|
+
description: "All requirement are true"
|
|
7
|
+
|
|
8
|
+
- model: endoreg_db.requirement_set_type
|
|
9
|
+
fields:
|
|
10
|
+
name: "any"
|
|
11
|
+
name_de: "mindestens eine"
|
|
12
|
+
name_en: "at least one"
|
|
13
|
+
description: "At least one requirement is true"
|
|
14
|
+
|
|
15
|
+
- model: endoreg_db.requirement_set_type
|
|
16
|
+
fields:
|
|
17
|
+
name: "none"
|
|
18
|
+
name_de: "keine"
|
|
19
|
+
name_en: "none"
|
|
20
|
+
description: "No requirement is true"
|
|
21
|
+
|
|
22
|
+
- model: endoreg_db.requirement_set_type
|
|
23
|
+
fields:
|
|
24
|
+
name: "exactly_1"
|
|
25
|
+
name_de: "genau eins"
|
|
26
|
+
name_en: "exactly one"
|
|
27
|
+
description: "Exactly one requirement is true"
|
|
28
|
+
|
|
29
|
+
- model: endoreg_db.requirement_set_type
|
|
30
|
+
fields:
|
|
31
|
+
name: "at_least_1"
|
|
32
|
+
name_de: "mindestens eins"
|
|
33
|
+
name_en: "at least one"
|
|
34
|
+
description: "At least one requirement is true"
|
|
35
|
+
|
|
36
|
+
- model: endoreg_db.requirement_set_type
|
|
37
|
+
fields:
|
|
38
|
+
name: "at_most_1"
|
|
39
|
+
name_de: "höchstens eins"
|
|
40
|
+
name_en: "at most one"
|
|
41
|
+
description: "At most one requirement is true"
|