endoreg-db 0.8.9.32__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of endoreg-db might be problematic. Click here for more details.

Files changed (787) hide show
  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
  300. endoreg_db/management/commands/load_examination_data.py +78 -0
  301. endoreg_db/management/commands/load_examination_indication_data.py +85 -0
  302. endoreg_db/management/commands/load_finding_data.py +115 -0
  303. endoreg_db/management/commands/load_gender_data.py +37 -0
  304. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +142 -0
  305. endoreg_db/management/commands/load_information_source.py +46 -0
  306. endoreg_db/management/commands/load_lab_value_data.py +52 -0
  307. endoreg_db/management/commands/load_legacy_data.py +303 -0
  308. endoreg_db/management/commands/load_medication_data.py +104 -0
  309. endoreg_db/management/commands/load_name_data.py +36 -0
  310. endoreg_db/management/commands/load_organ_data.py +39 -0
  311. endoreg_db/management/commands/load_pdf_type_data.py +58 -0
  312. endoreg_db/management/commands/load_profession_data.py +40 -0
  313. endoreg_db/management/commands/load_qualification_data.py +56 -0
  314. endoreg_db/management/commands/load_report_reader_flag_data.py +40 -0
  315. endoreg_db/management/commands/load_requirement_data.py +207 -0
  316. endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
  317. endoreg_db/management/commands/load_risk_data.py +57 -0
  318. endoreg_db/management/commands/load_shift_data.py +57 -0
  319. endoreg_db/management/commands/load_tag_data.py +54 -0
  320. endoreg_db/management/commands/load_unit_data.py +40 -0
  321. endoreg_db/management/commands/load_user_groups.py +26 -0
  322. endoreg_db/management/commands/model_input.py +169 -0
  323. endoreg_db/management/commands/register_ai_model.py +70 -0
  324. endoreg_db/management/commands/setup_endoreg_db.py +459 -0
  325. endoreg_db/management/commands/start_filewatcher.py +115 -0
  326. endoreg_db/management/commands/storage_management.py +622 -0
  327. endoreg_db/management/commands/summarize_db_content.py +280 -0
  328. endoreg_db/management/commands/train_image_multilabel_model.py +144 -0
  329. endoreg_db/management/commands/validate_video_files.py +189 -0
  330. endoreg_db/management/commands/video_validation.py +20 -0
  331. endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
  332. endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
  333. endoreg_db/mermaid/binary_classification_annotation.md +50 -0
  334. endoreg_db/mermaid/classification.md +8 -0
  335. endoreg_db/mermaid/examination.md +8 -0
  336. endoreg_db/mermaid/findings.md +7 -0
  337. endoreg_db/mermaid/image_classification.md +28 -0
  338. endoreg_db/mermaid/interventions.md +8 -0
  339. endoreg_db/mermaid/morphology.md +8 -0
  340. endoreg_db/mermaid/patient_creation.md +14 -0
  341. endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
  342. endoreg_db/migrations/0001_initial.py +1953 -0
  343. endoreg_db/migrations/__init__.py +0 -0
  344. endoreg_db/models/__init__.py +322 -0
  345. endoreg_db/models/administration/__init__.py +95 -0
  346. endoreg_db/models/administration/ai/__init__.py +9 -0
  347. endoreg_db/models/administration/ai/active_model.py +35 -0
  348. endoreg_db/models/administration/ai/ai_model.py +180 -0
  349. endoreg_db/models/administration/ai/model_type.py +42 -0
  350. endoreg_db/models/administration/case/__init__.py +5 -0
  351. endoreg_db/models/administration/case/case.py +114 -0
  352. endoreg_db/models/administration/case/case_template/__init__.py +3 -0
  353. endoreg_db/models/administration/case/case_template/case_template.py +3 -0
  354. endoreg_db/models/administration/case/case_template/case_template_rule.py +3 -0
  355. endoreg_db/models/administration/case/case_template/case_template_rule_value.py +3 -0
  356. endoreg_db/models/administration/case/case_template/case_template_type.py +3 -0
  357. endoreg_db/models/administration/center/__init__.py +13 -0
  358. endoreg_db/models/administration/center/center.py +85 -0
  359. endoreg_db/models/administration/center/center_product.py +67 -0
  360. endoreg_db/models/administration/center/center_resource.py +69 -0
  361. endoreg_db/models/administration/center/center_shift.py +94 -0
  362. endoreg_db/models/administration/center/center_waste.py +42 -0
  363. endoreg_db/models/administration/person/__init__.py +26 -0
  364. endoreg_db/models/administration/person/employee/__init__.py +3 -0
  365. endoreg_db/models/administration/person/employee/employee.py +40 -0
  366. endoreg_db/models/administration/person/employee/employee_qualification.py +44 -0
  367. endoreg_db/models/administration/person/employee/employee_type.py +50 -0
  368. endoreg_db/models/administration/person/examiner/__init__.py +4 -0
  369. endoreg_db/models/administration/person/examiner/examiner.py +64 -0
  370. endoreg_db/models/administration/person/names/__init__.py +0 -0
  371. endoreg_db/models/administration/person/names/first_name.py +20 -0
  372. endoreg_db/models/administration/person/names/last_name.py +20 -0
  373. endoreg_db/models/administration/person/patient/__init__.py +7 -0
  374. endoreg_db/models/administration/person/patient/patient.py +488 -0
  375. endoreg_db/models/administration/person/patient/patient_external_id.py +36 -0
  376. endoreg_db/models/administration/person/person.py +35 -0
  377. endoreg_db/models/administration/person/profession/__init__.py +28 -0
  378. endoreg_db/models/administration/person/user/__init__.py +5 -0
  379. endoreg_db/models/administration/person/user/portal_user_information.py +41 -0
  380. endoreg_db/models/administration/product/__init__.py +15 -0
  381. endoreg_db/models/administration/product/product.py +106 -0
  382. endoreg_db/models/administration/product/product_group.py +41 -0
  383. endoreg_db/models/administration/product/product_material.py +60 -0
  384. endoreg_db/models/administration/product/product_weight.py +51 -0
  385. endoreg_db/models/administration/product/reference_product.py +147 -0
  386. endoreg_db/models/administration/qualification/__init__.py +7 -0
  387. endoreg_db/models/administration/qualification/qualification.py +43 -0
  388. endoreg_db/models/administration/qualification/qualification_type.py +39 -0
  389. endoreg_db/models/administration/shift/__init__.py +9 -0
  390. endoreg_db/models/administration/shift/scheduled_days.py +72 -0
  391. endoreg_db/models/administration/shift/shift.py +57 -0
  392. endoreg_db/models/administration/shift/shift_type.py +108 -0
  393. endoreg_db/models/aidataset/__init__.py +5 -0
  394. endoreg_db/models/aidataset/aidataset.py +193 -0
  395. endoreg_db/models/label/__init__.py +23 -0
  396. endoreg_db/models/label/annotation/__init__.py +12 -0
  397. endoreg_db/models/label/annotation/image_classification.py +85 -0
  398. endoreg_db/models/label/annotation/video_segmentation_annotation.py +61 -0
  399. endoreg_db/models/label/label.py +91 -0
  400. endoreg_db/models/label/label_set.py +68 -0
  401. endoreg_db/models/label/label_type.py +29 -0
  402. endoreg_db/models/label/label_video_segment/__init__.py +3 -0
  403. endoreg_db/models/label/label_video_segment/_create_from_video.py +42 -0
  404. endoreg_db/models/label/label_video_segment/label_video_segment.py +611 -0
  405. endoreg_db/models/label/video_segmentation_label.py +35 -0
  406. endoreg_db/models/label/video_segmentation_labelset.py +28 -0
  407. endoreg_db/models/media/__init__.py +23 -0
  408. endoreg_db/models/media/frame/__init__.py +3 -0
  409. endoreg_db/models/media/frame/frame.py +137 -0
  410. endoreg_db/models/media/pdf/__init__.py +12 -0
  411. endoreg_db/models/media/pdf/raw_pdf.py +764 -0
  412. endoreg_db/models/media/pdf/report_file.py +162 -0
  413. endoreg_db/models/media/pdf/report_reader/__init__.py +7 -0
  414. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +85 -0
  415. endoreg_db/models/media/pdf/report_reader/report_reader_flag.py +46 -0
  416. endoreg_db/models/media/video/__init__.py +9 -0
  417. endoreg_db/models/media/video/create_from_file.py +402 -0
  418. endoreg_db/models/media/video/pipe_1.py +258 -0
  419. endoreg_db/models/media/video/pipe_2.py +129 -0
  420. endoreg_db/models/media/video/video_file.py +907 -0
  421. endoreg_db/models/media/video/video_file_ai.py +828 -0
  422. endoreg_db/models/media/video/video_file_anonymize.py +524 -0
  423. endoreg_db/models/media/video/video_file_frames/__init__.py +49 -0
  424. endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +25 -0
  425. endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
  426. endoreg_db/models/media/video/video_file_frames/_delete_frames.py +126 -0
  427. endoreg_db/models/media/video/video_file_frames/_extract_frames.py +233 -0
  428. endoreg_db/models/media/video/video_file_frames/_get_frame.py +36 -0
  429. endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +13 -0
  430. endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +24 -0
  431. endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +40 -0
  432. endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +44 -0
  433. endoreg_db/models/media/video/video_file_frames/_get_frames.py +30 -0
  434. endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +205 -0
  435. endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +228 -0
  436. endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +107 -0
  437. endoreg_db/models/media/video/video_file_io.py +272 -0
  438. endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
  439. endoreg_db/models/media/video/video_file_meta/get_crop_template.py +58 -0
  440. endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +62 -0
  441. endoreg_db/models/media/video/video_file_meta/get_fps.py +183 -0
  442. endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +198 -0
  443. endoreg_db/models/media/video/video_file_meta/text_meta.py +178 -0
  444. endoreg_db/models/media/video/video_file_meta/video_meta.py +105 -0
  445. endoreg_db/models/media/video/video_file_segments.py +317 -0
  446. endoreg_db/models/media/video/video_metadata.py +67 -0
  447. endoreg_db/models/media/video/video_processing.py +192 -0
  448. endoreg_db/models/medical/__init__.py +136 -0
  449. endoreg_db/models/medical/contraindication/README.md +1 -0
  450. endoreg_db/models/medical/contraindication/__init__.py +29 -0
  451. endoreg_db/models/medical/disease.py +174 -0
  452. endoreg_db/models/medical/event.py +154 -0
  453. endoreg_db/models/medical/examination/__init__.py +20 -0
  454. endoreg_db/models/medical/examination/examination.py +183 -0
  455. endoreg_db/models/medical/examination/examination_indication.py +229 -0
  456. endoreg_db/models/medical/examination/examination_time.py +68 -0
  457. endoreg_db/models/medical/examination/examination_time_type.py +44 -0
  458. endoreg_db/models/medical/examination/examination_type.py +47 -0
  459. endoreg_db/models/medical/finding/__init__.py +20 -0
  460. endoreg_db/models/medical/finding/finding.py +113 -0
  461. endoreg_db/models/medical/finding/finding_classification.py +131 -0
  462. endoreg_db/models/medical/finding/finding_intervention.py +68 -0
  463. endoreg_db/models/medical/finding/finding_type.py +38 -0
  464. endoreg_db/models/medical/hardware/__init__.py +8 -0
  465. endoreg_db/models/medical/hardware/endoscope.py +77 -0
  466. endoreg_db/models/medical/hardware/endoscopy_processor.py +182 -0
  467. endoreg_db/models/medical/laboratory/__init__.py +5 -0
  468. endoreg_db/models/medical/laboratory/lab_value.py +490 -0
  469. endoreg_db/models/medical/medication/__init__.py +23 -0
  470. endoreg_db/models/medical/medication/medication.py +45 -0
  471. endoreg_db/models/medical/medication/medication_indication.py +78 -0
  472. endoreg_db/models/medical/medication/medication_indication_type.py +58 -0
  473. endoreg_db/models/medical/medication/medication_intake_time.py +58 -0
  474. endoreg_db/models/medical/medication/medication_schedule.py +58 -0
  475. endoreg_db/models/medical/organ/__init__.py +38 -0
  476. endoreg_db/models/medical/patient/__init__.py +48 -0
  477. endoreg_db/models/medical/patient/medication_examples.py +56 -0
  478. endoreg_db/models/medical/patient/patient_disease.py +72 -0
  479. endoreg_db/models/medical/patient/patient_event.py +80 -0
  480. endoreg_db/models/medical/patient/patient_examination.py +280 -0
  481. endoreg_db/models/medical/patient/patient_examination_indication.py +57 -0
  482. endoreg_db/models/medical/patient/patient_finding.py +416 -0
  483. endoreg_db/models/medical/patient/patient_finding_classification.py +231 -0
  484. endoreg_db/models/medical/patient/patient_finding_intervention.py +37 -0
  485. endoreg_db/models/medical/patient/patient_lab_sample.py +157 -0
  486. endoreg_db/models/medical/patient/patient_lab_value.py +247 -0
  487. endoreg_db/models/medical/patient/patient_medication.py +111 -0
  488. endoreg_db/models/medical/patient/patient_medication_schedule.py +152 -0
  489. endoreg_db/models/medical/risk/__init__.py +7 -0
  490. endoreg_db/models/medical/risk/risk.py +73 -0
  491. endoreg_db/models/medical/risk/risk_type.py +54 -0
  492. endoreg_db/models/metadata/__init__.py +19 -0
  493. endoreg_db/models/metadata/model_meta.py +266 -0
  494. endoreg_db/models/metadata/model_meta_logic.py +485 -0
  495. endoreg_db/models/metadata/pdf_meta.py +96 -0
  496. endoreg_db/models/metadata/sensitive_meta.py +345 -0
  497. endoreg_db/models/metadata/sensitive_meta_logic.py +1161 -0
  498. endoreg_db/models/metadata/video_meta.py +459 -0
  499. endoreg_db/models/metadata/video_prediction_logic.py +232 -0
  500. endoreg_db/models/metadata/video_prediction_meta.py +319 -0
  501. endoreg_db/models/operation_log.py +63 -0
  502. endoreg_db/models/other/__init__.py +40 -0
  503. endoreg_db/models/other/distribution/__init__.py +46 -0
  504. endoreg_db/models/other/distribution/base_value_distribution.py +22 -0
  505. endoreg_db/models/other/distribution/date_value_distribution.py +163 -0
  506. endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +50 -0
  507. endoreg_db/models/other/distribution/numeric_value_distribution.py +211 -0
  508. endoreg_db/models/other/distribution/single_categorical_value_distribution.py +23 -0
  509. endoreg_db/models/other/emission/__init__.py +5 -0
  510. endoreg_db/models/other/emission/emission_factor.py +110 -0
  511. endoreg_db/models/other/gender.py +32 -0
  512. endoreg_db/models/other/information_source.py +190 -0
  513. endoreg_db/models/other/material.py +34 -0
  514. endoreg_db/models/other/resource.py +24 -0
  515. endoreg_db/models/other/tag.py +32 -0
  516. endoreg_db/models/other/transport_route.py +40 -0
  517. endoreg_db/models/other/unit.py +40 -0
  518. endoreg_db/models/other/waste.py +28 -0
  519. endoreg_db/models/report/__init__.py +0 -0
  520. endoreg_db/models/report/images.py +0 -0
  521. endoreg_db/models/report/report.py +5 -0
  522. endoreg_db/models/requirement/__init__.py +11 -0
  523. endoreg_db/models/requirement/requirement.py +792 -0
  524. endoreg_db/models/requirement/requirement_error.py +84 -0
  525. endoreg_db/models/requirement/requirement_evaluation/__init__.py +6 -0
  526. endoreg_db/models/requirement/requirement_evaluation/evaluate_with_dependencies.py +268 -0
  527. endoreg_db/models/requirement/requirement_evaluation/get_values.py +40 -0
  528. endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +6 -0
  529. endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +137 -0
  530. endoreg_db/models/requirement/requirement_operator.py +187 -0
  531. endoreg_db/models/requirement/requirement_set.py +327 -0
  532. endoreg_db/models/state/__init__.py +13 -0
  533. endoreg_db/models/state/abstract.py +11 -0
  534. endoreg_db/models/state/anonymization.py +30 -0
  535. endoreg_db/models/state/audit_ledger.py +155 -0
  536. endoreg_db/models/state/label_video_segment.py +31 -0
  537. endoreg_db/models/state/processing_history/__init__.py +3 -0
  538. endoreg_db/models/state/processing_history/processing_history.py +136 -0
  539. endoreg_db/models/state/raw_pdf.py +219 -0
  540. endoreg_db/models/state/sensitive_meta.py +50 -0
  541. endoreg_db/models/state/video.py +251 -0
  542. endoreg_db/models/upload_job.py +100 -0
  543. endoreg_db/models/utils.py +138 -0
  544. endoreg_db/queries/__init__.py +3 -0
  545. endoreg_db/queries/annotations/__init__.py +1 -0
  546. endoreg_db/queries/annotations/legacy.py +169 -0
  547. endoreg_db/queries/sanity/__init_.py +0 -0
  548. endoreg_db/root_urls.py +27 -0
  549. endoreg_db/schemas/__init__.py +0 -0
  550. endoreg_db/schemas/examination_evaluation.py +30 -0
  551. endoreg_db/serializers/Frames_NICE_and_PARIS_classifications.py +861 -0
  552. endoreg_db/serializers/__init__.py +104 -0
  553. endoreg_db/serializers/administration/__init__.py +13 -0
  554. endoreg_db/serializers/administration/ai/__init__.py +9 -0
  555. endoreg_db/serializers/administration/ai/active_model.py +12 -0
  556. endoreg_db/serializers/administration/ai/ai_model.py +20 -0
  557. endoreg_db/serializers/administration/ai/model_type.py +12 -0
  558. endoreg_db/serializers/administration/center.py +14 -0
  559. endoreg_db/serializers/administration/gender.py +11 -0
  560. endoreg_db/serializers/anonymization.py +77 -0
  561. endoreg_db/serializers/evaluation/examination_evaluation.py +0 -0
  562. endoreg_db/serializers/examination/__init__.py +10 -0
  563. endoreg_db/serializers/examination/base.py +45 -0
  564. endoreg_db/serializers/examination/dropdown.py +20 -0
  565. endoreg_db/serializers/examination_serializer.py +9 -0
  566. endoreg_db/serializers/finding/__init__.py +5 -0
  567. endoreg_db/serializers/finding/finding.py +61 -0
  568. endoreg_db/serializers/finding_classification/__init__.py +7 -0
  569. endoreg_db/serializers/finding_classification/choice.py +19 -0
  570. endoreg_db/serializers/finding_classification/classification.py +11 -0
  571. endoreg_db/serializers/label_video_segment/__init__.py +9 -0
  572. endoreg_db/serializers/label_video_segment/image_classification_annotation.py +62 -0
  573. endoreg_db/serializers/label_video_segment/label/__init__.py +6 -0
  574. endoreg_db/serializers/label_video_segment/label/label.py +15 -0
  575. endoreg_db/serializers/label_video_segment/label_video_segment.py +427 -0
  576. endoreg_db/serializers/meta/__init__.py +13 -0
  577. endoreg_db/serializers/meta/sensitive_meta_detail.py +122 -0
  578. endoreg_db/serializers/meta/sensitive_meta_update.py +153 -0
  579. endoreg_db/serializers/meta/sensitive_meta_verification.py +62 -0
  580. endoreg_db/serializers/meta/video_meta.py +39 -0
  581. endoreg_db/serializers/misc/__init__.py +14 -0
  582. endoreg_db/serializers/misc/file_overview.py +72 -0
  583. endoreg_db/serializers/misc/sensitive_patient_data.py +144 -0
  584. endoreg_db/serializers/misc/stats.py +35 -0
  585. endoreg_db/serializers/misc/translatable_field_mix_in.py +44 -0
  586. endoreg_db/serializers/misc/upload_job.py +74 -0
  587. endoreg_db/serializers/patient/__init__.py +12 -0
  588. endoreg_db/serializers/patient/patient.py +103 -0
  589. endoreg_db/serializers/patient/patient_dropdown.py +35 -0
  590. endoreg_db/serializers/patient_examination/__init__.py +7 -0
  591. endoreg_db/serializers/patient_examination/patient_examination.py +168 -0
  592. endoreg_db/serializers/patient_finding/__init__.py +15 -0
  593. endoreg_db/serializers/patient_finding/patient_finding.py +32 -0
  594. endoreg_db/serializers/patient_finding/patient_finding_classification.py +47 -0
  595. endoreg_db/serializers/patient_finding/patient_finding_detail.py +62 -0
  596. endoreg_db/serializers/patient_finding/patient_finding_intervention.py +28 -0
  597. endoreg_db/serializers/patient_finding/patient_finding_list.py +40 -0
  598. endoreg_db/serializers/patient_finding/patient_finding_write.py +135 -0
  599. endoreg_db/serializers/pdf/__init__.py +3 -0
  600. endoreg_db/serializers/pdf/anony_text_validation.py +101 -0
  601. endoreg_db/serializers/requirements/requirement_schema.py +20 -0
  602. endoreg_db/serializers/requirements/requirement_sets.py +99 -0
  603. endoreg_db/serializers/sensitive_meta_serializer.py +301 -0
  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
endoreg_db/data/lx_permission/endoreg.yaml ADDED
@@ -0,0 +1,52 @@
1
+ # EndoReg Base DB
2
+ - model: endoreg_db.lx_permission
3
+ fields:
4
+ name: "endoreg_base_db_read"
5
+
6
+ - model: endoreg_db.lx_permission
7
+ fields:
8
+ name: "endoreg_base_db_write"
9
+
10
+ - model: endoreg_db.lx_permission
11
+ fields:
12
+ name: "endoreg_base_db_admin"
13
+
14
+ - model: endoreg_db.lx_permission
15
+ fields:
16
+ name: "endoreg_base_db_user"
17
+
18
+
19
+ # EndoReg Backup DB
20
+ - model: endoreg_db.lx_permission
21
+ fields:
22
+ name: "endoreg_backup_db_read"
23
+
24
+ - model: endoreg_db.lx_permission
25
+ fields:
26
+ name: "endoreg_backup_db_write"
27
+
28
+ - model: endoreg_db.lx_permission
29
+ fields:
30
+ name: "endoreg_backup_db_admin"
31
+
32
+ - model: endoreg_db.lx_permission
33
+ fields:
34
+ name: "endoreg_backup_db_user"
35
+
36
+
37
+ # EndoReg Test DB
38
+ - model: endoreg_db.lx_permission
39
+ fields:
40
+ name: "endoreg_test_db_read"
41
+
42
+ - model: endoreg_db.lx_permission
43
+ fields:
44
+ name: "endoreg_test_db_write"
45
+
46
+ - model: endoreg_db.lx_permission
47
+ fields:
48
+ name: "endoreg_test_db_admin"
49
+
50
+ - model: endoreg_db.lx_permission
51
+ fields:
52
+ name: "endoreg_test_db_user"
endoreg_db/data/material/material.yaml ADDED
@@ -0,0 +1,91 @@
1
+ - model: endoreg_db.Material
2
+ fields:
3
+ name: cardboard
4
+ name_de: Pappe
5
+ name_en: cardboard
6
+ emission_factor: material_emission_cardboard
7
+
8
+ - fields:
9
+ name: foil
10
+ name_de: Folien
11
+ name_en: foil
12
+ emission_factor: material_emission_foil
13
+ model: endoreg_db.Material
14
+
15
+ - fields:
16
+ name: gold
17
+ name_de: Gold
18
+ name_en: gold
19
+ emission_factor: material_emission_gold
20
+
21
+
22
+ - fields:
23
+ name: metal
24
+ name_de: Metall
25
+ name_en: metal
26
+ emission_factor: material_emission_metal
27
+ model: endoreg_db.Material
28
+
29
+ - fields:
30
+ name: nickel
31
+ name_de: Nickel
32
+ name_en: nickel
33
+ emission_factor: material_emission_nickel
34
+ model: endoreg_db.Material
35
+
36
+ - fields:
37
+ name: paper
38
+ name_de: Papier
39
+ name_en: paper
40
+ emission_factor: material_emission_paper
41
+ model: endoreg_db.Material
42
+
43
+ - fields:
44
+ name: paper_coated
45
+ name_de: Beschichtetes Papier
46
+ name_en: paper_coated
47
+ emission_factor: material_emission_paper_coated
48
+ model: endoreg_db.Material
49
+
50
+ - fields:
51
+ name: plastic
52
+ name_de: Kunststoff
53
+ name_en: plastic
54
+ emission_factor: material_emission_plastic
55
+ model: endoreg_db.Material
56
+ - fields:
57
+ name: plastic_coated
58
+ name_de: Kunststoff beschichtet
59
+ name_en: plastic_coated
60
+ emission_factor: material_emission_plastic_coated
61
+ model: endoreg_db.Material
62
+ - fields:
63
+ name: silicone
64
+ name_de: Silikon
65
+ name_en: silicone
66
+ emission_factor: material_emission_silicone
67
+ model: endoreg_db.Material
68
+ - fields:
69
+ name: steel
70
+ name_de: Stahl
71
+ name_en: steel
72
+ emission_factor: material_emission_steel
73
+ model: endoreg_db.Material
74
+ - fields:
75
+ name: tantal
76
+ name_de: Tantal
77
+ name_en: tantal
78
+ emission_factor: material_emission_tantal
79
+ model: endoreg_db.Material
80
+ - fields:
81
+ name: textile
82
+ name_de: Textil
83
+ name_en: textile
84
+ emission_factor: material_emission_textile
85
+ model: endoreg_db.Material
86
+ - fields:
87
+ name: titan
88
+ name_de: Titan
89
+ name_en: titan
90
+ emission_factor: material_emission_titan
91
+ model: endoreg_db.Material
endoreg_db/data/medication/anticoagulation.yaml ADDED
@@ -0,0 +1,65 @@
1
+ - models: endoreg_db.medication
2
+ fields:
3
+ name: "apixaban"
4
+ name_de: "Apixaban"
5
+ name_en: "Apixaban"
6
+ adapt_to_renal_function: true
7
+ adapt_to_hepatic_function: true
8
+ adapt_to_indication: true
9
+ adapt_to_age: true
10
+ adapt_to_weight: false
11
+ adapt_to_risk: true
12
+ default_unit: "miligram"
13
+
14
+ - models: endoreg_db.medication
15
+ fields:
16
+ name: "dabigatran"
17
+ name_de: "Dabigatran"
18
+ name_en: "Dabigatran"
19
+ adapt_to_renal_function: true
20
+ adapt_to_hepatic_function: true
21
+ adapt_to_indication: true
22
+ adapt_to_age: true
23
+ adapt_to_weight: false
24
+ adapt_to_risk: true
25
+ default_unit: "miligram"
26
+
27
+ - models: endoreg_db.medication
28
+ fields:
29
+ name: "edoxaban"
30
+ name_de: "Edoxaban"
31
+ name_en: "Edoxaban"
32
+ adapt_to_renal_function: true
33
+ adapt_to_hepatic_function: true
34
+ adapt_to_indication: true
35
+ adapt_to_age: true
36
+ adapt_to_weight: false
37
+ adapt_to_risk: true
38
+ default_unit: "miligram"
39
+
40
+ - models: endoreg_db.medication
41
+ fields:
42
+ name: "rivaroxaban"
43
+ name_de: "Rivaroxaban"
44
+ name_en: "Rivaroxaban"
45
+ adapt_to_renal_function: true
46
+ adapt_to_hepatic_function: true
47
+ adapt_to_indication: true
48
+ adapt_to_age: true
49
+ adapt_to_weight: false
50
+ adapt_to_risk: true
51
+ default_unit: "miligram"
52
+
53
+ - models: endoreg_db.medication
54
+ fields:
55
+ name: "enoxaparin"
56
+ name_de: "Enoxaparin"
57
+ name_en: "Enoxaparin"
58
+ adapt_to_renal_function: true
59
+ adapt_to_hepatic_function: false
60
+ adapt_to_indication: true
61
+ adapt_to_age: false
62
+ adapt_to_weight: true
63
+ adapt_to_risk: true
64
+ default_unit: "miligram"
65
+
endoreg_db/data/medication/tah.yaml ADDED
@@ -0,0 +1,70 @@
1
+ # ASS
2
+ - models: endoreg_db.medication
3
+ fields:
4
+ name: "aspirin"
5
+ name_de: "Aspririn"
6
+ name_en: "Aspirin"
7
+ adapt_to_renal_function: false
8
+ adapt_to_hepatic_function: false
9
+ adapt_to_indication: true
10
+ adapt_to_age: false
11
+ adapt_to_weight: false
12
+ adapt_to_risk: false
13
+ default_unit: "miligram"
14
+
15
+ # Clopidogrel
16
+ - models: endoreg_db.medication
17
+ fields:
18
+ name: "clopidogrel"
19
+ name_de: "Clopidogrel"
20
+ name_en: "Clopidogrel"
21
+ adapt_to_renal_function: false
22
+ adapt_to_hepatic_function: false
23
+ adapt_to_indication: true
24
+ adapt_to_age: false
25
+ adapt_to_weight: false
26
+ adapt_to_risk: false
27
+ default_unit: "miligram"
28
+
29
+ # Prasugrel
30
+ - models: endoreg_db.medication
31
+ fields:
32
+ name: "prasugrel"
33
+ name_de: "Prasugrel"
34
+ name_en: "Prasugrel"
35
+ adapt_to_renal_function: false
36
+ adapt_to_hepatic_function: false
37
+ adapt_to_indication: true
38
+ adapt_to_age: false
39
+ adapt_to_weight: false
40
+ adapt_to_risk: false
41
+ default_unit: "miligram"
42
+
43
+
44
+ # Ticagrelor
45
+ - models: endoreg_db.medication
46
+ fields:
47
+ name: "ticagrelor"
48
+ name_de: "Ticagrelor"
49
+ name_en: "Ticagrelor"
50
+ adapt_to_renal_function: false
51
+ adapt_to_hepatic_function: true
52
+ adapt_to_indication: true
53
+ adapt_to_age: false
54
+ adapt_to_weight: false
55
+ adapt_to_risk: false
56
+ default_unit: "miligram"
57
+
58
+ # Tirofiban
59
+ - models: endoreg_db.medication
60
+ fields:
61
+ name: "tirofiban"
62
+ name_de: "Tirofiban"
63
+ name_en: Tirofiban"
64
+ adapt_to_renal_function: true
65
+ adapt_to_hepatic_function: true
66
+ adapt_to_indication: true
67
+ adapt_to_age: false
68
+ adapt_to_weight: false
69
+ adapt_to_risk: false
70
+ default_unit: "miligram"
endoreg_db/data/medication_indication/anticoagulation.yaml ADDED
@@ -0,0 +1,115 @@
1
+ # Quellen: Fachinformationen d. entsprechenden Medikamente
2
+ - model: endoreg_db.medication_indication
3
+ fields:
4
+ name: "te_prevention-after_hip-apixaban"
5
+ events: ["hip_replacement_surgery"]
6
+ diseases: []
7
+ disease_classification_choices: []
8
+ medication_schedules: [
9
+ "apixaban-2.5mg-twice_daily_32d", # min 32d, max 38d
10
+ ]
11
+ indication_type: "thromboembolism-prevention-after_hip_replacement"
12
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
13
+
14
+ - model: endoreg_db.medication_indication
15
+ fields:
16
+ name: "te_prevention-after_knee-apixaban"
17
+ events: ["knee_replacement_surgery"]
18
+ diseases: []
19
+ disease_classification_choices: []
20
+ medication_schedules: [
21
+ "apixaban-2.5mg-twice_daily_10d", # min 10d, max 14d
22
+ ]
23
+ indication_type: "thromboembolism-prevention-after_knee_replacement"
24
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
25
+
26
+ - model: endoreg_db.medication_indication
27
+ fields:
28
+ name: "te_prevention-non_valvular_af-apixaban"
29
+ events: []
30
+ diseases: ["non_valvular_atrial_fibrillation"]
31
+ disease_classification_choices: []
32
+ medication_schedules: [
33
+ "apixaban-5mg-twice_daily", # no limit
34
+ ]
35
+ indication_type: "thromboembolism-prevention-non_valvular_af"
36
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
37
+
38
+ # - model: endoreg_db.medication_indication
39
+ # fields:
40
+ # name: "te_prevention_non_valvular_af-apixaban-ckd_stage_4"
41
+ # classification_choices: [
42
+ # "ckd_4"
43
+ # ]
44
+ # medication_schedules: [
45
+ # "apixaban-2.5mg-twice_daily"
46
+ # ]
47
+ # indication_type: "thromboembolism-prevention-non_valvular_af"
48
+ # sources: [
49
+ # "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
50
+ # ]
51
+
52
+ # generally same as ckd4 above but technically different definition
53
+ # Applies for example when risk factors (2 of three: age >= 80; KG <= 60 kg; Kreatinin >= 1.5 mg/dl)
54
+ - model: endoreg_db.medication_indication
55
+ fields:
56
+ name: "te_prevention-non_valvular_af-apixaban-dr" #dr = dose reduction
57
+ events: []
58
+ diseases: ["non_valvular_atrial_fibrillation"]
59
+ disease_classification_choices: []
60
+ medication_schedules: [
61
+ "apixaban-2.5mg-twice_daily", # no limit
62
+ ]
63
+ indication_type: "thromboembolism-prevention-non_valvular_af"
64
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
65
+
66
+ - model: endoreg_db.medication_indication
67
+ fields:
68
+ name: "dvt_treatment-apixaban-3mo"
69
+ events: ["deep_vein_thrombosis"]
70
+ diseases: []
71
+ disease_classification_choices: []
72
+ medication_schedules: [
73
+ "apixaban-5g-twice_daily_7d", # first 7d of treatment 10 mg twice daily
74
+ "apixaban-5g-twice_daily_3mo", # no limit
75
+ ]
76
+ indication_type: "deep_vein_thrombosis-treatment"
77
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
78
+
79
+ - model: endoreg_db.medication_indication
80
+ fields:
81
+ name: "pe_treatment-apixaban-3mo"
82
+ events: ["pulmonary_embolism"]
83
+ diseases: []
84
+ disease_classification_choices: []
85
+ medication_schedules: [
86
+ "apixaban-5g-twice_daily_7d", # first 7d of treatment 10 mg twice daily
87
+ "apixaban-5g-twice_daily_3mo", # no limit
88
+ ]
89
+ indication_type: "pulmonary_embolism-treatment"
90
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
91
+
92
+ - model: endoreg_db.medication_indication
93
+ fields:
94
+ name: "pe_treatment-apixaban-6mo"
95
+ events: ["pulmonary_embolism"]
96
+ diseases: []
97
+ disease_classification_choices: []
98
+ medication_schedules: [
99
+ "apixaban-5g-twice_daily_7d", # first 7d of treatment 10 mg twice daily
100
+ "apixaban-5g-twice_daily_6mo", # no limit
101
+ ]
102
+ indication_type: "pulmonary_embolism-treatment"
103
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
104
+
105
+ - model: endoreg_db.medication_indication
106
+ fields:
107
+ name: "te_prevention-recurrent-te-apixaban"
108
+ events: ["recurrent_thrombembolism"]
109
+ diseases: []
110
+ disease_classification_choices: []
111
+ medication_schedules: ["apixaban-2.5mg-twice_daily"]
112
+ indication_type: "thrombembolism-prevention-recurrent_thrombembolism"
113
+ sources: ["fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"]
114
+ # templates to create:
115
+ # medication_schedules:
endoreg_db/data/medication_indication_type/data.yaml ADDED
@@ -0,0 +1,11 @@
1
+ - model: endoreg_db.medication_indication_type
2
+ fields:
3
+ name: "event"
4
+ name_de: "Ereignis"
5
+ name_en: "event"
6
+
7
+ - model: endoreg_db.medication_indication_type
8
+ fields:
9
+ name: "disease"
10
+ name_de: "Krankheit"
11
+ name_en: "disease"
endoreg_db/data/medication_indication_type/thrombembolism.yaml ADDED
@@ -0,0 +1,41 @@
1
+ - model: endoreg_db.medication_indication_type
2
+ fields:
3
+ name: "thromboembolism-prevention-after_hip_replacement"
4
+ name_de: "Thromboembolie-Prophylaxe nach Hüft-TEP"
5
+ name_en: "Thromboembolism Prevention after Hip Replacement"
6
+
7
+ - model: endoreg_db.medication_indication_type
8
+ fields:
9
+ name: "thromboembolism-prevention-after_knee_replacement"
10
+ name_de: "Thromboembolie-Prophylaxe nach Knie-TEP"
11
+ name_en: "Thromboembolism Prevention after Knee Replacement"
12
+
13
+ - model: endoreg_db.medication_indication_type
14
+ fields:
15
+ name: "thromboembolism-prevention-non_valvular_af"
16
+ name_de: "Thromboembolie-Prophylaxe bei nicht-valvulärem Vorhofflimmern"
17
+ name_en: "Thromboembolism Prevention in Non-Valvular Atrial Fibrillation"
18
+
19
+ - model: endoreg_db.medication_indication_type
20
+ fields:
21
+ name: "thromboembolism-prevention-recurrent_thrombembolism"
22
+ name_de: "Thromboembolie-Prophylaxe bei rezidivierenden Thrombembolien"
23
+ name_en: "Thromboembolism Prevention in Recurrent Thrombembolism"
24
+
25
+ - model: endoreg_db.medication_indication_type
26
+ fields:
27
+ name: "deep_vein_thrombosis-treatment"
28
+ name_de: "Thrombose-Behandlung bei tiefer Beinvenenthrombose"
29
+ name_en: "Deep Vein Thrombosis Treatment"
30
+
31
+ - model: endoreg_db.medication_indication_type
32
+ fields:
33
+ name: "pulmonary_embolism-treatment"
34
+ name_de: "Thrombose-Behandlung bei Lungenembolie"
35
+ name_en: "Pulmonary Embolism Treatment"
36
+
37
+ - model: endoreg_db.medication_indication_type
38
+ fields:
39
+ name: "thrombembolism-prevention-recurrent_thrombembolism"
40
+ name_de: "Thromboembolie-Prophylaxe bei rezidivierenden Thrombembolien"
41
+ name_en: "Thromboembolism Prevention in Recurrent Thrombembolism"
endoreg_db/data/medication_intake_time/base.yaml ADDED
@@ -0,0 +1,31 @@
1
+ - model: endoreg_db.endoreg_db.medication_intake_time # Changed to fully qualified model name
2
+ fields:
3
+ name: "daily-morning"
4
+ name_de: "täglich, morgens"
5
+ name_en: "daily, morning"
6
+ repeats: "daily"
7
+ time: "07:00:00"
8
+
9
+ - model: endoreg_db.endoreg_db.medication_intake_time # Changed to fully qualified model name
10
+ fields:
11
+ name: "daily-evening"
12
+ name_de: "täglich, abends"
13
+ name_en: "daily, evening"
14
+ repeats: "daily"
15
+ time: "19:00:00"
16
+
17
+ - model: endoreg_db.endoreg_db.medication_intake_time # Changed to fully qualified model name
18
+ fields:
19
+ name: "daily-noon"
20
+ name_de: "täglich, mittags"
21
+ name_en: "daily, noon"
22
+ repeats: "daily"
23
+ time: "13:00:00"
24
+
25
+ - model: endoreg_db.endoreg_db.medication_intake_time # Changed to fully qualified model name
26
+ fields:
27
+ name: "daily-night"
28
+ name_de: "täglich, nachts"
29
+ name_en: "daily, night"
30
+ repeats: "daily"
31
+ time: "01:00:00"
endoreg_db/data/medication_schedule/apixaban.yaml ADDED
@@ -0,0 +1,95 @@
1
+ - model: endoreg_db.medication_schedule
2
+ fields:
3
+ name: "apixaban-2.5mg-twice_daily_32d"
4
+ name_de: "Apixaban 2.5mg, 2x täglich, 32 Tage"
5
+ name_en: "Apixaban 2.5mg, twice daily, 32 days"
6
+ therapy_duration_d: 32
7
+ medication: "apixaban"
8
+ dose: 2.5
9
+ unit: "miligram"
10
+ intake_times: [
11
+ "daily-morning",
12
+ "daily-evening"
13
+ ]
14
+
15
+ - model: endoreg_db.medication_schedule
16
+ fields:
17
+ name: "apixaban-2.5mg-twice_daily_10d"
18
+ name_de: "Apixaban 2.5mg, 2x täglich, 10 Tage"
19
+ name_en: "Apixaban 2.5mg, twice daily, 10 days"
20
+ therapy_duration_d: 10
21
+ medication: "apixaban"
22
+ dose: 2.5
23
+ unit: "miligram"
24
+ intake_times: [
25
+ "daily-morning",
26
+ "daily-evening"
27
+ ]
28
+
29
+ - model: endoreg_db.medication_schedule
30
+ fields:
31
+ name: "apixaban-5mg-twice_daily"
32
+ name_de: "Apixaban 5mg, 2x täglich"
33
+ name_en: "Apixaban 5mg, twice daily"
34
+ medication: "apixaban"
35
+ dose: 5
36
+ unit: "miligram"
37
+ intake_times: [
38
+ "daily-morning",
39
+ "daily-evening"
40
+ ]
41
+
42
+ - model: endoreg_db.medication_schedule
43
+ fields:
44
+ name: "apixaban-2.5mg-twice_daily"
45
+ name_de: "Apixaban 2.5mg, 2x täglich"
46
+ name_en: "Apixaban 2.5mg, twice daily"
47
+ medication: "apixaban"
48
+ dose: 2.5
49
+ unit: "miligram"
50
+ intake_times: [
51
+ "daily-morning",
52
+ "daily-evening"
53
+ ]
54
+
55
+ - model: endoreg_db.medication_schedule
56
+ fields:
57
+ name: "apixaban-5g-twice_daily_7d"
58
+ name_de: "Apixaban 5g, 2x täglich, 7 Tage"
59
+ name_en: "Apixaban 5g, twice daily, 7 days"
60
+ therapy_duration_d: 7
61
+ medication: "apixaban"
62
+ dose: 5
63
+ unit: "miligram"
64
+ intake_times: [
65
+ "daily-morning",
66
+ "daily-evening"
67
+ ]
68
+
69
+ - model: endoreg_db.medication_schedule
70
+ fields:
71
+ name: "apixaban-5g-twice_daily_3mo"
72
+ name_de: "Apixaban 5g, 2x täglich, 3 Monate"
73
+ name_en: "Apixaban 5g, twice daily, 3 months"
74
+ therapy_duration_d: 90
75
+ medication: "apixaban"
76
+ dose: 5
77
+ unit: "miligram"
78
+ intake_times: [
79
+ "daily-morning",
80
+ "daily-evening"
81
+ ]
82
+
83
+ - model: endoreg_db.medication_schedule
84
+ fields:
85
+ name: "apixaban-5g-twice_daily_6mo"
86
+ name_de: "Apixaban 5g, 2x täglich, 6 Monate"
87
+ name_en: "Apixaban 5g, twice daily, 6 months"
88
+ therapy_duration_d: 180
89
+ medication: "apixaban"
90
+ dose: 5
91
+ unit: "miligram"
92
+ intake_times: [
93
+ "daily-morning",
94
+ "daily-evening"
95
+ ]
endoreg_db/data/medication_schedule/ass.yaml ADDED
@@ -0,0 +1,12 @@
1
+ - model: endoreg_db.medication_schedule
2
+ fields:
3
+ name: "ass-100mg-once_daily"
4
+ name_de: "ASS 100mg, 1x täglich"
5
+ name_en: "ASS 100mg, once daily"
6
+ therapy_duration_d: -1
7
+ medication: "aspirin"
8
+ dose: 100
9
+ unit: "miligram"
10
+ intake_times: [
11
+ "daily-morning",
12
+ ]
endoreg_db/data/medication_schedule/enoxaparin.yaml ADDED
@@ -0,0 +1,26 @@
1
+ - model: endoreg_db.medication_schedule
2
+ fields:
3
+ name: "enoxaparin-80mg-twice_daily"
4
+ name_de: "Enoxaparin 80mg, 2x täglich"
5
+ name_en: "Enoxaparin 80mg, twice daily"
6
+ therapy_duration_d: -1
7
+ medication: "enoxaparin"
8
+ dose: 80
9
+ unit: "miligram"
10
+ intake_times: [
11
+ "daily-morning",
12
+ "daily-evening"
13
+ ]
14
+
15
+ - model: endoreg_db.medication_schedule
16
+ fields:
17
+ name: "enoxaparin-40mg-one_daily"
18
+ name_de: "Enoxaparin 80mg, 1x täglich"
19
+ name_en: "Enoxaparin 80mg, once daily"
20
+ therapy_duration_d: -1
21
+ medication: "enoxaparin"
22
+ dose: 40
23
+ unit: "miligram"
24
+ intake_times: [
25
+ "daily-morning"
26
+ ]
endoreg_db/data/names_first/first_names.yaml ADDED
@@ -0,0 +1,54 @@
1
+ - model: endoreg_db.first_name
2
+ fields:
3
+ name: Alexander
4
+ - model: endoreg_db.first_name
5
+ fields:
6
+ name: Angelika
7
+ - model: endoreg_db.first_name
8
+ fields:
9
+ name: Anja
10
+ - model: endoreg_db.first_name
11
+ fields:
12
+ name: Doro
13
+ - model: endoreg_db.first_name
14
+ fields:
15
+ name: Dorothea
16
+ - model: endoreg_db.first_name
17
+ fields:
18
+ name: Florian
19
+ - model: endoreg_db.first_name
20
+ fields:
21
+ name: Hans
22
+ - model: endoreg_db.first_name
23
+ fields:
24
+ name: Kathrin
25
+ - model: endoreg_db.first_name
26
+ fields:
27
+ name: Laura
28
+ - model: endoreg_db.first_name
29
+ fields:
30
+ name: Linhel
31
+ - model: endoreg_db.first_name
32
+ fields:
33
+ name: Mandy
34
+ - model: endoreg_db.first_name
35
+ fields:
36
+ name: Markus
37
+ - model: endoreg_db.first_name
38
+ fields:
39
+ name: Philip
40
+ - model: endoreg_db.first_name
41
+ fields:
42
+ name: Rainer
43
+ - model: endoreg_db.first_name
44
+ fields:
45
+ name: Sven
46
+ - model: endoreg_db.first_name
47
+ fields:
48
+ name: Tanja
49
+ - model: endoreg_db.first_name
50
+ fields:
51
+ name: Theodor
52
+ - model: endoreg_db.first_name
53
+ fields:
54
+ name: Thomas