endoreg-db 0.8.9.32__py3-none-any.whl

endoreg_db/data/profession/data.yaml

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+- model: endoreg_db.Profession
+  fields:
+    name: "nurse"
+    name_de: "Pflegekraft"
+    name_en: "Nurse"
+    description: "Not further specified nurse"
+
+# endoscopy nurse
+- model: endoreg_db.Profession
+  fields:
+    name: "endoscopy-nurse"
+    name_de: "Pflegekraft (Endoskopie)"
+    name_en: "Endoscopy nurse"
+    description: "Endoscopy nurse"
+
+- model: endoreg_db.Profession
+  fields:
+    name: "physician"
+    name_de: "Arzt"
+    name_en: "Physician"
+    description: "Not further specified doctor"
+
+# Physician in training (gastroenterology)
+- model: endoreg_db.Profession
+  fields:
+    name: "physician-in-training-gastroenterology"
+    name_de: "Arzt in Weiterbildung Gastroenterologie"
+    name_en: "Physician in training (gastroenterology)"
+    description: "Physician in training (gastroenterology)"
+  
+# Physician in training (internal medicine)
+- model: endoreg_db.Profession
+  fields:
+    name: "physician-in-training-internal-medicine"
+    name_de: "Arzt in Weiterbildung Innere Medizin"
+    name_en: "Physician in training (internal medicine)"
+    description: "Physician in training (internal medicine)"
+
+# Physician in training (general surgery)
+- model: endoreg_db.Profession
+  fields:
+    name: "physician-in-training-general-surgery"
+    name_de: "Arzt in Weiterbildung Allgemeinchirurgie"
+    name_en: "Physician in training (general surgery)"
+    description: "Physician in training (general surgery)"
+
+# Physician (Internal Medicine)
+- model: endoreg_db.Profession
+  fields:
+    name: "physician-internal-medicine"
+    name_de: "Arzt Innere Medizin"
+    name_en: "Physician (Internal Medicine)"
+    description: "Physician (Internal Medicine)"
+
+# Physician (Gastroenterology)
+- model: endoreg_db.Profession
+  fields:
+    name: "physician-gastroenterology"
+    name_de: "Arzt Gastroenterologie"
+    name_en: "Physician (Gastroenterology)"
+    description: "Physician (Gastroenterology)"
+
+# Physician (General Surgery)
+- model: endoreg_db.Profession
+  fields:
+    name: "physician-general-surgery"
+    name_de: "Arzt Allgemeinchirurgie"
+    name_en: "Physician (General Surgery)"
+    description: "Physician (General Surgery)"
+

endoreg_db/data/qualification/endoscopy.yaml

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+
+- model: endoreg_db.qualification
+  fields:
+    name: "endoscopy_supervised"
+    name_de: "Endoskopie (Beaufsichtigt)"
+    name_en: "Endoscopy (Supervised)"
+    qualification_types:
+      - "endoscopy"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "endoscopy_base"
+    name_de: "Endoskopie (Basis)"
+    name_en: "Endoscopy (Base)"
+    qualification_types:
+      - "endoscopy"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "endoscopy_eus"
+    name_de: "Endoskopie (EUS)"
+    name_en: "Endoscopy (EUS)"
+    qualification_types:
+      - "endoscopy"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "endoscopy_ercp"
+    name_de: "Endoskopie (ERCP)"
+    name_en: "Endoscopy (ERCP)"
+    qualification_types:
+      - "endoscopy"
+      - "shift_requirement"

endoreg_db/data/qualification/m2.yaml

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+- model: endoreg_db.qualification
+  fields:
+    name: "wr_m41"
+    name_de: "Visitendienst - M41"
+    name_en: "Ward Rounds - M41"
+    qualification_types:
+      - "ward_rounds"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "wr_m42g"
+    name_de: "Visitendienst - M42 (G)"
+    name_en: "Ward Rounds - M42 (G)"
+    qualification_types:
+      - "ward_rounds"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "wr_m42h"
+    name_de: "Visitendienst - M42 (H)"
+    name_en: "Ward Rounds - M42 (H)"
+    qualification_types:
+      - "ward_rounds"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "wr_m43"
+    name_de: "Visitendienst - M43"
+    name_en: "Ward Rounds - M43"
+    qualification_types:
+      - "ward_rounds"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "wr_m52"
+    name_de: "Visitendienst - M52"
+    name_en: "Ward Rounds - M52"
+    qualification_types:
+      - "ward_rounds"

endoreg_db/data/qualification/outpatient_clinic.yaml

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+- model: endoreg_db.qualification
+  fields:
+    name: "outpatient_informed_consent"
+    name_de: "Sprechstunde - Aufklärung"
+    name_en: "Outpatient Clinic - Informed Consent"
+    qualification_types:
+      - "outpatient_clinic"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "outpatient_ibd"
+    name_de: "Sprechstunde - CED"
+    name_en: "Outpatient Clinic - IBD"
+    qualification_types:
+      - "outpatient_clinic"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "outpatient_net"
+    name_de: "Sprechstunde - NET"
+    name_en: "Outpatient Clinic - NET"
+    qualification_types:
+      - "outpatient_clinic"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "outpatient_rare_diseases"
+    name_de: "Sprechstunde - Seltene Erkrankungen"
+    name_en: "Outpatient Clinic - Rare Diseases"
+    qualification_types:
+      - "outpatient_clinic"
+      - "shift_requirement"
+

endoreg_db/data/qualification/sonography.yaml

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+
+- model: endoreg_db.qualification
+  fields:
+    name: "sonography_supervised"
+    name_de: "Sonographie (Beaufsichtigt)"
+    name_en: "Sonography (Supervised)"
+    qualification_types:
+      - "sonography"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "sonography_base"
+    name_de: "Sonographie (Basis)"
+    name_en: "Sonography (Base)"
+    qualification_types:
+      - "sonography"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "sonography_liver_biopsy"
+    name_de: "Sonographie (Leberbiopsie)"
+    name_en: "Sonography (Liver Biopsy)"
+    qualification_types:
+      - "sonography"
+      - "shift_requirement"
+
+- model: endoreg_db.qualification
+  fields:
+    name: "sonography_supervision"
+    name_de: "Sonographie (Supervision)"
+    name_en: "Sonography (Supervision)"
+    qualification_types:
+      - "sonography"
+      - "shift_requirement"

endoreg_db/data/qualification_type/base.yaml

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+- model: endoreg_db.qualification_type
+  fields:
+    name: "ward_rounds"
+    name_de: "Visitendienst"
+    name_en: "Ward Rounds"
+
+- model: endoreg_db.qualification_type
+  fields:
+    name: "outpatient_clinic"
+    name_de: "Sprechstunde"
+    name_en: "Outpatient Clinic"
+
+- model: endoreg_db.qualification_type
+  fields:
+    name: "shift_requirement"
+    name_de: "Schichtdienst"
+    name_en: "Shift Requirement"
+
+- model: endoreg_db.qualification_type
+  fields:
+    name: "endoscopy"
+    name_de: "Endoskopie"
+    name_en: "Endoscopy"
+
+- model: endoreg_db.qualification_type
+  fields:
+    name: "sonography"
+    name_de: "Sonographie"
+    name_en: "Sonography"

endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml

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+- fields:
+    name: reference_balloon_wuerzburg
+    product: extraction_balloon_escort_2
+    product_group: Balloon
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_bougie_wuerzburg
+    product: esophageal_dilator
+    product_group: Bougie
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_wire_wuerzburg
+    product: visiglide_2
+    product_group: Wire
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_peg_wuerzburg
+    product: peg_freka_15_ch
+    product_group: PEG
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_instrument_wuerzburg
+    product: biopsy_grasper_hot_radial_jaw_4
+    product_group: Instrument
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_metalstent_wuerzburg
+    product: nitinol_stent_aix_oel
+    product_group: Metal-Stent
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_plasticstent_wuerzburg
+    product: biliary_stent_cotton_leung_sof_flex
+    product_group: Plastic-Stent
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_plastic_wuerzburg
+    product: bite_protector
+    product_group: Plastic
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_plastic-large_wuerzburg
+    product: pressure_syringe_60_ml
+    product_group: Plastic-Large
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_coat_wuerzburg
+    product: foliodress_gown_standard
+    product_group: Coat
+  model: endoreg_db.ReferenceProduct
+- fields:
+    name: reference_absorbant-pad_wuerzburg
+    product: absorbant_pad
+    product_group: Absorbant-Pad
+  model: endoreg_db.ReferenceProduct

endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml

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+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "rkh-histology-generic-cut-off-below-line"
+    value: "Mitkollegialen Grüßen"
+
+- model: endoreg_db.pdf_type
+  fields:
+    name: "rkh-histology-generic-patient-info-line"
+    value: "Pat.: "

endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml

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+# yaml definitions for report reader flag objects
+# PATIENT_INFO_LINE_FLAG = "Patient: "
+# ENDOSCOPE_INFO_LINE_FLAG = "Gerät: "
+# EXAMINER_INFO_LINE_FLAG = "1. Unters.:"
+# CUT_OFF_BELOW_LINE_FLAG = "________________"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-examination-generic-patient-info-line"
+    value: "Patient: "
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-examination-generic-endoscope-info-line"
+    value: "Gerät: "
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-examination-generic-examiner-info-line"
+    value: "1. Unters.:"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-examination-generic-cut-off-below-line-01"
+    value: "________________"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-examination-generic-anamnese-info-line"
+    value: "Anamnese: "

endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml

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+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-histology-generic-patient-info-line"
+    value: "Patient:"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-histology-generic-examiner-info-line"
+    value: "Eingang am:"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-histology-generic-cut-off-below-line-01"
+    value: "$$-3"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-endoscopy-histology-cut-off-below-line-flag-01"
+    value: "$$-3"
+
+- model: endoreg_db.report_reader_flag
+  fields:
+    name: "ukw-histology-generic-endoscope-info-line"
+    value: ""

endoreg_db/data/requirement/01_patient_data.yaml

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+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_dob_information"
+    name_de: "Patient hat Geburtsdatum Information"
+    name_en: "Patient has date of birth information"
+    description: "Checks if the patient has date of birth information."
+    requirement_types:
+      - "patient"
+      - "patient_examination"
+    operator: model_attribute_set_any #TODO implement operator
+    operator_instructions: "dob;patient.dob"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_valid_dob_information"
+    name_de: "Patient hat gültige Geburtsdatum Information"
+    name_en: "Patient has valid date of birth information"
+    description: "Checks if the patient has valid date of birth information."
+    requirement_types:
+      - "patient"
+      - "patient_examination"
+    operator: model_attribute_numeric_in_range
+    operator_instructions: "?age;?patient.age"
+    numeric_value_min: 18
+    numeric_value_max: 110
+
+# Name related Requirements
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_first_name_information"
+    name_de: "Patienten-Untersuchung hat Namensinformation"
+    name_en: "Patient Examination has names information"
+    description: "Checks if the patient has first and last name information."
+    requirement_types:
+      - "patient"
+      - "patient_examination"
+    operator: "model_attribute_set_any"
+    operator_instructions: "?first_name;?patient.first_name"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_last_name_information"
+    name_de: "Patienten-Untersuchung hat Nachnameninformation"
+    name_en: "Patient Examination has last name information"
+    description: "Checks if the patient has last name information."
+    requirement_types:
+      - "patient"
+      - "patient_examination"
+    operator: "model_attribute_set_any"
+    operator_instructions: "?last_name;?patient.last_name"
+
+############# Gender Related Requirements ################
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_gender_information"
+    name_de: "Patient hat Geschlechtsinformation"
+    name_en: "Patient has gender information"
+    description: "Checks if the patient has gender information."
+    requirement_types:
+      - "patient"
+      - "patient_examination"
+    operator: model_attribute_set_any
+    operator_instructions: "?gender;?patient.gender"
+
+# model_attribute_is_among_values operator to be implemented
+# should resolve the target models defined in requirement types to
+# get at least one of the linked models (i.e. "patient_has_gender_information",
+# expects a patient as input and should fetch the gender attribute and check
+# if it is among the defined values [male, female])
+# operator_instructions must be provided for used operator;
+# we will parse the value as comma separated list;
+# it defines attributes the operator will try to fetch
+# from the input models defined in requirement_types.
+# at least one of the provided values must match at least one
+# valid field for each input model
+
+- model: endoreg_db.requirement
+  fields:
+    name: "patient_has_valid_gender_information"
+    name_de: "Patient hat Geschlechtsinformation"
+    name_en: "Patient has gender information"
+    description: "Checks if the patient has gender information."
+    requirement_types:
+      - "patient"
+      - "patient_examination"
+    operator: model_attribute_is_among_values #TODO implement operator; here,
+    # we add "entries leading with "!" to indicate the current
+    # requirements field we use to fetch  the list of values
+    # to check against
+    operator_instructions: "?gender;?patient.gender;!genders"
+    genders:
+      - "male"
+      - "female"

endoreg_db/data/requirement/old/colon_polyp_intervention.yaml

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+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_default_polyp_resection"
+    requirement_types:
+      - "patient_finding"
+    operators:
+      - "models_match_any"
+    finding_interventions:
+      - "colon_lesion_biopsy"
+      - "colon_lesion_polypectomy_cold_snare"
+      - "colon_lesion_polypectomy_hot_snare"
+      - "colon_lesion_emr"
+      - "colon_lesion_esd"
+      - "colon_lesion_eftr"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_default_polyp_no_resection"
+    requirement_types:
+      - "patient_finding"
+    operators:
+      - "models_match_none"
+    finding_interventions:
+      - "colon_lesion_biopsy"
+      - "colon_lesion_polypectomy_cold_snare"
+      - "colon_lesion_polypectomy_hot_snare"
+      - "colon_lesion_emr"
+      - "colon_lesion_esd"
+      - "colon_lesion_eftr"
+# - model: endoreg_db.requirement
+#   fields:
+#     name: "colonoscopy_finding_colon_polyp_no_resection_reason"
+#     requirement_types:
+#       - "patient_finding"
+#     operators:
+#       - "models_match_any"
+#     finding_classifications:
+#       - "colon_lesion_no_resection_reason"
+
+# - model: endoreg_db.requirement
+#   fields:
+#     name: "colonoscopy_polyp_clip_application"
+#     requirement_types:
+#       - "patient_finding"
+#     operators:
+#       - "models_match_any"
+#     finding_interventions:
+#       - "colon_lesion_over_the_scope_clip"
+#       - "colon_lesion_clip"

endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml

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+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_austria_screening_bowel_prep"
+    requirement_types:
+      - "patient_examination"
+    operators:
+      - "models_match_any"
+    finding_classifications:
+      - "bowel_prep_screening_austria"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_austria_screening_sedation"
+    requirement_types:
+      - "patient_examination"
+    operators:
+      - "models_match_any"
+    finding_classifications:
+      - "sedation_performed"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_austria_screening_examination_cecum_visualized"
+    requirement_types:
+      - "patient_finding"
+    operators:
+      - "models_match_all"
+    findings:
+      - "cecum"
+    finding_classifications: [
+      "visualized"
+    ]
+    finding_classification_choices: [
+      "yes"
+    ]
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_austria_screening_examination_reason_incomplete"
+    requirement_types:
+      - "patient_examination"
+    operators:
+      - "models_match_all"
+    finding_classifications:
+      - "colonoscopy_not_complete_reason"

endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml

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+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_default_size"
+    requirement_types:
+      - "patient_finding"
+    operators:
+      - "models_match_any"
+    finding_classifications:
+      - "colon_lesion_size_mm"
+      - "colon_lesion_size_categorical"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_default_location"
+    requirement_types:
+      - "patient_finding"
+    operators:
+      - "models_match_any"
+    finding_classifications:
+      - "colonoscopy_location_default"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_default_polyp_morphology"
+    operators:
+      - "models_match_any"
+    requirement_types:
+      - "patient_finding"
+    finding_classifications:
+      - "colon_lesion_paris"
+      - "colon_lesion_lst"
+      - "colon_lesion_planarity_default"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_default_polyp_histology"
+    requirement_types:
+      - "patient_finding"
+    operators:
+      - "models_match_all"
+    finding_classifications:
+      - "colonoscopy_polyp_histology"
+      - "colonoscopy_polyp_histology_dysplasia"
+      - "colonoscopy_histology_dignity"
+      - "colonoscopy_default_histology_in_sano"
+
+- models: endoreg_db.requirement
+  fields:
+    name: "colonoscopy_finding_colon_polyp_histo_expected"

endoreg_db/data/requirement/old/disease_cardiovascular.yaml

@@ -0,0 +1,79 @@
+# KHK
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_coronary_artery_disease"
+    name_de: "Koronare Gefäßerkrankung"
+    name_en: "Coronary artery disease"
+    description: "Coronary artery disease"
+    requirement_types:
+      - "patient"
+    operators:
+      - models_match_all
+    diseases:
+      - "coronary_artery_disease"
+
+# Hypertension
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_hypertension"
+    name_de: "Arterielle Hypertonie"
+    name_en: "Hypertension"
+    description: "Hypertension"
+    requirement_types:
+      - "patient"
+    operators:
+      - models_match_all
+    diseases:
+      - "hypertension"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_congestive_heart_failure"
+    name_de: "Chron. Herzinsuffizienz"
+    name_en: "Congestive heart failure"
+    description: "Congestive heart failure"
+    requirement_types:
+      - "patient"
+    operators:
+      - models_match_all
+    diseases:
+      - "congestive_heart_failure"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_diabetes_mellitus_I"
+    name_de: "Diabetes mellitus Typ I"
+    name_en: "Diabetes mellitus type I"
+    description: "Diabetes mellitus type I"
+    requirement_types:
+      - "patient"
+    operators:
+      - models_match_all
+    diseases:
+      - "diabetes_mellitus_I"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_diabetes_mellitus_II"
+    name_de: "Diabetes mellitus Typ II"
+    name_en: "Diabetes mellitus type II"
+    description: "Diabetes mellitus type II"
+    requirement_types:
+      - "patient"
+    operators:
+      - models_match_all
+    diseases:
+      - "diabetes_mellitus_II"
+
+- model: endoreg_db.requirement
+  fields:
+    name: "disease_is_non_valvular_atrial_fibrillation"
+    name_de: "Nicht valvuläres Vorhofflimmern"
+    name_en: "Non valvular atrial fibrillation"
+    description: "Non valvular atrial fibrillation"
+    requirement_types:
+      - "patient"
+    operators:
+      - models_match_all
+    diseases:
+      - "non_valvular_atrial_fibrillation"