endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,380 @@
1
+ # api/viewsets/lookup.py
2
+ import logging
3
+ from ast import literal_eval
4
+ from collections.abc import Mapping
5
+
6
+ from django.core.cache import cache
7
+ from rest_framework import status, viewsets
8
+ from rest_framework.decorators import action
9
+ from rest_framework.parsers import FormParser, JSONParser, MultiPartParser
10
+ from rest_framework.response import Response
11
+
12
+ # Use module import so tests can monkeypatch functions on the module
13
+ from endoreg_db.services import lookup_service as ls
14
+ from endoreg_db.services.lookup_store import DEFAULT_TTL_SECONDS, LookupStore
15
+ from endoreg_db.utils.permissions import EnvironmentAwarePermission
16
+ from endoreg_db.models.other.tag import Tag
17
+
18
+ ORIGIN_MAP_PREFIX = "lookup:origin:"
19
+ ISSUED_MAP_PREFIX = "lookup:issued_for_internal:"
20
+
21
+ logger = logging.getLogger(__name__)
22
+
23
+
24
+ class LookupViewSet(viewsets.ViewSet):
25
+ """
26
+ Django REST Framework ViewSet for managing lookup sessions.
27
+
28
+ This ViewSet provides REST API endpoints for the lookup system, which
29
+ evaluates medical examination requirements against patient data. It uses
30
+ token-based sessions stored in Django cache to maintain state across
31
+ multiple client requests.
32
+
33
+ Key features:
34
+ - Session initialization with patient examination data
35
+ - Retrieval of lookup data by token
36
+ - Partial updates to session data with automatic recomputation
37
+ - Manual recomputation of derived data
38
+ - Automatic session recovery for expired tokens
39
+
40
+ The API supports both internal service tokens and public client tokens,
41
+ with origin mapping to enable session restart functionality.
42
+
43
+ Endpoints:
44
+ - POST /init: Initialize new lookup session
45
+ - GET /{token}/all: Retrieve complete session data
46
+ - GET/PATCH /{token}/parts: Get/update partial session data
47
+ - POST /{token}/recompute: Manually trigger recomputation
48
+ """
49
+
50
+ permission_classes = [EnvironmentAwarePermission]
51
+ parser_classes = (JSONParser, FormParser, MultiPartParser)
52
+ INPUT_KEYS = {
53
+ "patient_examination_id",
54
+ "selectedRequirementSetIds",
55
+ "selectedChoices",
56
+ }
57
+
58
+ user_tags = Tag
59
+
60
+ @action(detail=False, methods=["post"])
61
+ def init(self, request):
62
+ """
63
+ Initialize a new lookup session for a patient examination.
64
+
65
+ Creates a new token-based session containing initial lookup data
66
+ for the specified patient examination. Handles malformed payloads
67
+ and supports multiple initialization requests for the same examination
68
+ by issuing fresh public tokens while maintaining internal state.
69
+
70
+ Request body:
71
+ patient_examination_id: Integer ID of the patient examination
72
+
73
+ Returns:
74
+ JSON response with session token
75
+
76
+ Raises:
77
+ 400: Invalid patient_examination_id or creation failure
78
+ """
79
+ try:
80
+ debug_data = getattr(request, "data", None)
81
+ raw_post = getattr(getattr(request, "_request", None), "POST", None)
82
+ body_preview = None
83
+ try:
84
+ body = getattr(getattr(request, "_request", None), "body", b"")
85
+ body_preview = body[:200]
86
+
87
+ except Exception:
88
+ body_preview = None
89
+ logger.debug(
90
+ "lookup.init incoming: data=%r POST=%r body[:200]=%r",
91
+ debug_data,
92
+ raw_post,
93
+ body_preview,
94
+ )
95
+
96
+ except Exception:
97
+ pass
98
+ # Prefer DRF data
99
+ raw_pe = (
100
+ request.data.get("patient_examination_id")
101
+ if hasattr(request, "data")
102
+ else None
103
+ )
104
+ # Fallback: parse malformed form payload where the entire dict was sent as a single key string
105
+
106
+ if raw_pe is None:
107
+ for candidate in (
108
+ getattr(getattr(request, "_request", None), "POST", None),
109
+ request.data if hasattr(request, "data") else None,
110
+ ):
111
+ try:
112
+ if isinstance(candidate, Mapping) and len(candidate.keys()) == 1:
113
+ only_key = next(iter(candidate.keys()))
114
+ if (
115
+ isinstance(only_key, str)
116
+ and only_key.startswith("{")
117
+ and only_key.endswith("}")
118
+ ):
119
+ try:
120
+ parsed = literal_eval(only_key)
121
+ if (
122
+ isinstance(parsed, dict)
123
+ and "patient_examination_id" in parsed
124
+ ):
125
+ raw_pe = parsed.get("patient_examination_id")
126
+ logger.debug(
127
+ "lookup.init recovered pe_id from malformed payload: %r",
128
+ raw_pe,
129
+ )
130
+ break
131
+
132
+ except Exception:
133
+ pass
134
+
135
+ except Exception:
136
+ pass
137
+
138
+ user_tags = request.data.get("user_tags", None)
139
+ if user_tags and not isinstance(user_tags, list):
140
+ user_tags = [user_tags]
141
+ # Fallback to query params
142
+ if raw_pe is None:
143
+ raw_pe = request.query_params.get("patient_examination_id")
144
+
145
+ logger.debug("lookup.init raw_pe=%r type=%s", raw_pe, type(raw_pe))
146
+
147
+ # Normalize potential list/tuple inputs (e.g., from form submissions)
148
+ if isinstance(raw_pe, (list, tuple)):
149
+ raw_pe = raw_pe[0] if raw_pe else None
150
+
151
+ if raw_pe in (None, ""):
152
+ return Response(
153
+ {"detail": "patient_examination_id must be an integer"},
154
+ status=status.HTTP_400_BAD_REQUEST,
155
+ )
156
+
157
+ # Coerce to int robustly
158
+ try:
159
+ pe_id = int(str(raw_pe))
160
+
161
+ except (TypeError, ValueError):
162
+ logger.warning("lookup.init failed to int() raw_pe=%r", raw_pe)
163
+ return Response(
164
+ {"detail": "patient_examination_id must be an integer"},
165
+ status=status.HTTP_400_BAD_REQUEST,
166
+ )
167
+
168
+ if pe_id <= 0:
169
+ return Response(
170
+ {"detail": "patient_examination_id must be positive"},
171
+ status=status.HTTP_400_BAD_REQUEST,
172
+ )
173
+
174
+ try:
175
+ # Create internal session via service (may seed its own token/cache)
176
+ service_kwargs = {}
177
+ if user_tags:
178
+ service_kwargs["user_tags"] = user_tags
179
+
180
+ internal_token = ls.create_lookup_token_for_pe(pe_id, **service_kwargs)
181
+ internal_data = LookupStore(token=internal_token).get_all()
182
+
183
+ issued_key = f"{ISSUED_MAP_PREFIX}{internal_token}"
184
+
185
+ issued_count = cache.get(issued_key, 0)
186
+
187
+ if issued_count == 0:
188
+ # First issuance: return the service token directly
189
+
190
+ token_to_return = internal_token
191
+
192
+ cache.set(issued_key, 1, DEFAULT_TTL_SECONDS)
193
+
194
+ else:
195
+ # Subsequent inits for same internal token: issue a fresh public token seeded with internal data
196
+
197
+ public_store = LookupStore()
198
+
199
+ token_to_return = public_store.init(
200
+ initial=internal_data, ttl=DEFAULT_TTL_SECONDS
201
+ )
202
+
203
+ cache.set(issued_key, issued_count + 1, DEFAULT_TTL_SECONDS)
204
+
205
+ # Persist origin mapping so we can restart expired sessions
206
+
207
+ cache.set(
208
+ f"{ORIGIN_MAP_PREFIX}{token_to_return}", pe_id, DEFAULT_TTL_SECONDS
209
+ )
210
+
211
+ except Exception as e:
212
+ return Response({"detail": str(e)}, status=status.HTTP_400_BAD_REQUEST)
213
+
214
+ return Response({"token": token_to_return}, status=status.HTTP_201_CREATED)
215
+
216
+ @action(detail=True, methods=["get"], url_path="all")
217
+ def get_all(self, request, pk=None):
218
+ """
219
+ Retrieve complete lookup data for a session token.
220
+
221
+ Returns all stored data for the given token. If data is not found,
222
+ attempts automatic session recovery using persisted origin mapping.
223
+
224
+ Args:
225
+ pk: Session token
226
+
227
+ Returns:
228
+ Complete lookup data dictionary
229
+
230
+ Raises:
231
+ 404: Token not found and recovery failed
232
+ """
233
+
234
+ if not pk:
235
+ return Response(
236
+ {"detail": "Token required"}, status=status.HTTP_404_NOT_FOUND
237
+ )
238
+
239
+ store = LookupStore(token=pk)
240
+
241
+ try:
242
+ validated_data = store.validate_and_recover_data(pk)
243
+
244
+ except Exception:
245
+ validated_data = None
246
+
247
+ if validated_data is None:
248
+ # Try automatic restart once using persisted origin mapping
249
+
250
+ pe_id = cache.get(f"{ORIGIN_MAP_PREFIX}{pk}")
251
+
252
+ if pe_id:
253
+ try:
254
+ internal_token = ls.create_lookup_token_for_pe(int(pe_id))
255
+
256
+ new_data = LookupStore(token=internal_token).get_all()
257
+
258
+ if not new_data:
259
+ return Response(
260
+ {
261
+ "error": "Lookup data not available after restart",
262
+ "token": pk,
263
+ },
264
+ status=status.HTTP_404_NOT_FOUND,
265
+ )
266
+
267
+ # Hydrate the original token with recovered data and refresh origin TTL
268
+ store.set_many(new_data)
269
+ cache.set(f"{ORIGIN_MAP_PREFIX}{pk}", pe_id, DEFAULT_TTL_SECONDS)
270
+ return Response(store.get_all(), status=status.HTTP_200_OK)
271
+
272
+ except Exception:
273
+ pass
274
+
275
+ return Response(
276
+ {"error": "Lookup data not found or expired", "token": pk},
277
+ status=status.HTTP_404_NOT_FOUND,
278
+ )
279
+
280
+ return Response(store.get_all())
281
+
282
+ @action(detail=True, methods=["get", "patch"], url_path="parts")
283
+ def parts(self, request, pk=None):
284
+ """
285
+ Get or update partial lookup data for a session.
286
+
287
+ GET: Retrieve specific keys from the session data.
288
+ PATCH: Update session data and trigger recomputation if input keys changed.
289
+
290
+ GET query params:
291
+ keys: Comma-separated list of keys to retrieve
292
+
293
+ PATCH body:
294
+ updates: Dictionary of key-value pairs to update
295
+
296
+ Args:
297
+ pk: Session token
298
+
299
+ Returns:
300
+ GET: Dictionary with requested keys
301
+ PATCH: Success confirmation
302
+
303
+ Raises:
304
+ 404: Token not found
305
+ 400: Invalid request parameters
306
+ """
307
+
308
+ if not pk:
309
+ return Response(
310
+ {"detail": "Token required"}, status=status.HTTP_404_NOT_FOUND
311
+ )
312
+
313
+ store = LookupStore(token=pk)
314
+
315
+ if request.method == "GET":
316
+ keys_param = request.query_params.get("keys", "")
317
+
318
+ keys = [k.strip() for k in keys_param.split(",") if k.strip()]
319
+
320
+ if not keys:
321
+ return Response(
322
+ {"detail": "Provide ?keys=key1,key2"},
323
+ status=status.HTTP_400_BAD_REQUEST,
324
+ )
325
+
326
+ try:
327
+ return Response(store.get_many(keys))
328
+
329
+ except Exception:
330
+ return Response(
331
+ {"detail": "Lookup data not found or expired"},
332
+ status=status.HTTP_404_NOT_FOUND,
333
+ )
334
+
335
+ # PATCH
336
+
337
+ updates = request.data.get("updates", {})
338
+
339
+ if not isinstance(updates, dict) or not updates:
340
+ return Response(
341
+ {"detail": "updates must be a non-empty object"},
342
+ status=status.HTTP_400_BAD_REQUEST,
343
+ )
344
+
345
+ store.set_many(updates)
346
+
347
+ if any(key in self.INPUT_KEYS for key in updates.keys()):
348
+ try:
349
+ ls.recompute_lookup(pk)
350
+
351
+ except Exception as e:
352
+ import logging
353
+
354
+ logging.getLogger(__name__).error(
355
+ "Failed to recompute after patch for token %s: %s", pk, e
356
+ )
357
+
358
+ return Response({"ok": True, "token": pk}, status=status.HTTP_200_OK)
359
+
360
+ @action(detail=True, methods=["post"], url_path="recompute")
361
+ def recompute(self, request, pk=None):
362
+ """Recompute lookup data based on current PatientExamination and user selections"""
363
+
364
+ if not pk:
365
+ return Response(
366
+ {"detail": "Token required"}, status=status.HTTP_404_NOT_FOUND
367
+ )
368
+
369
+ try:
370
+ updates = ls.recompute_lookup(pk)
371
+
372
+ return Response(
373
+ {"ok": True, "token": pk, "updates": updates}, status=status.HTTP_200_OK
374
+ )
375
+
376
+ except ValueError as e:
377
+ return Response({"detail": str(e)}, status=status.HTTP_404_NOT_FOUND)
378
+
379
+ except Exception as e:
380
+ return Response({"detail": str(e)}, status=status.HTTP_400_BAD_REQUEST)
@@ -0,0 +1,183 @@
1
+ # services/lookup_store.py
2
+
3
+ from __future__ import annotations
4
+
5
+ import uuid
6
+ from typing import Any, Dict, Iterable, Optional
7
+
8
+ from django.conf import settings
9
+ from django.core.cache import cache
10
+
11
+
12
+ # Align TTL with Django cache TIMEOUT for consistency in tests and runtime
13
+
14
+
15
+ try:
16
+ DEFAULT_TTL_SECONDS = int(
17
+ settings.CACHES.get("default", {}).get("TIMEOUT", 60 * 30)
18
+ )
19
+
20
+
21
+ except Exception:
22
+ DEFAULT_TTL_SECONDS = 60 * 30 # 30 minutes fallback
23
+
24
+
25
+ class LookupStore:
26
+ """
27
+
28
+ Server-side lookup dictionary stored in Django cache.
29
+
30
+ Return a token to the client; later requests use that token to get/update parts.
31
+
32
+ """
33
+
34
+ def __init__(self, token: Optional[str] = None):
35
+ self.token = token or uuid.uuid4().hex
36
+
37
+ @property
38
+ def cache_key(self) -> str:
39
+ return f"lookup:{self.token}"
40
+
41
+ def init(
42
+ self, initial: Optional[Dict[str, Any]] = None, ttl: int = DEFAULT_TTL_SECONDS
43
+ ) -> str:
44
+ cache.set(self.cache_key, initial or {}, ttl)
45
+
46
+ return self.token
47
+
48
+ def get_all(self) -> Dict[str, Any]:
49
+ return cache.get(self.cache_key, {})
50
+
51
+ def get_many(self, keys: Iterable[str]) -> Dict[str, Any]:
52
+ data = self.get_all()
53
+
54
+ return {k: data.get(k) for k in keys}
55
+
56
+ def set_many(self, updates: Dict[str, Any], ttl: int = DEFAULT_TTL_SECONDS) -> None:
57
+ data = self.get_all()
58
+
59
+ data.update(updates)
60
+
61
+ cache.set(self.cache_key, data, ttl)
62
+
63
+ def get(self, key: str, default: Any = None) -> Any:
64
+ return self.get_all().get(key, default)
65
+
66
+ def set(self, key: str, value: Any, ttl: int = DEFAULT_TTL_SECONDS) -> None:
67
+ data = self.get_all()
68
+
69
+ data[key] = value
70
+
71
+ cache.set(self.cache_key, data, ttl)
72
+
73
+ def delete(self) -> None:
74
+ cache.delete(self.cache_key)
75
+
76
+ def patch(self, updates: Dict[str, Any], ttl: int = DEFAULT_TTL_SECONDS) -> None:
77
+ """Patch existing data with updates."""
78
+
79
+ data = self.get_all()
80
+
81
+ data.update(updates)
82
+
83
+ cache.set(self.cache_key, data, ttl)
84
+
85
+ def validate_and_recover_data(self, token):
86
+ """Validate stored data and attempt recovery if corrupted"""
87
+
88
+ data = self.get_all()
89
+
90
+ if not data:
91
+ return None
92
+
93
+ # Check if required fields are present
94
+
95
+ required_fields = [
96
+ "patient_examination_id",
97
+ "requirements_by_set",
98
+ "requirement_status",
99
+ ]
100
+
101
+ missing_fields = [field for field in required_fields if field not in data]
102
+
103
+ if missing_fields:
104
+ import logging
105
+
106
+ logger = logging.getLogger(__name__)
107
+
108
+ logger.warning(
109
+ f"Missing fields in lookup data for token {token}: {missing_fields}"
110
+ )
111
+
112
+ # Try to recover patient_examination_id from token or related data
113
+
114
+ if "patient_examination_id" in missing_fields:
115
+ # Attempt to extract from token or find related examination
116
+
117
+ recovered_id = self._recover_patient_examination_id(token)
118
+
119
+ if recovered_id:
120
+ data["patient_examination_id"] = recovered_id
121
+
122
+ logger.info(
123
+ f"Recovered patient_examination_id {recovered_id} for token {token}"
124
+ )
125
+
126
+ # Do not automatically recompute here to avoid loops
127
+
128
+ # Recompute is only triggered by PATCH or explicit POST /recompute/
129
+
130
+ # For now, just return the data as is
131
+
132
+ return data
133
+
134
+ def _recover_patient_examination_id(self, token: str) -> Optional[str]:
135
+ """
136
+
137
+ Placeholder for recovering patient_examination_id.
138
+
139
+ This should be implemented with logic to find the ID based on the token or other data.
140
+
141
+ """
142
+
143
+ # In a real implementation, you might query a database or another service.
144
+
145
+ # For now, we return None as recovery logic is not defined.
146
+
147
+ return None
148
+
149
+ def should_recompute(self, token):
150
+ """Check if recomputation is needed based on data freshness"""
151
+
152
+ data = self.get_all()
153
+
154
+ if not data:
155
+ return True
156
+
157
+ # Check if we have a last_recompute timestamp
158
+
159
+ last_recompute = data.get("_last_recompute")
160
+
161
+ if not last_recompute:
162
+ return True
163
+
164
+ # Only recompute if it's been more than 30 seconds since last recompute
165
+
166
+ # This prevents excessive recomputation while allowing for updates
167
+
168
+ from datetime import datetime, timedelta
169
+
170
+ try:
171
+ last_recompute_time = datetime.fromisoformat(last_recompute)
172
+
173
+ return datetime.now() - last_recompute_time > timedelta(seconds=30)
174
+
175
+ except (ValueError, TypeError):
176
+ return True
177
+
178
+ def mark_recompute_done(self):
179
+ """Mark that recomputation has been completed"""
180
+
181
+ from datetime import datetime
182
+
183
+ self.set("_last_recompute", datetime.now().isoformat())
@@ -0,0 +1,87 @@
1
+ import logging
2
+ from typing import Any, Tuple, TYPE_CHECKING
3
+ import json
4
+
5
+ from endoreg_db.models.requirement.requirement_error import (
6
+ RequirementEvaluationError,
7
+ )
8
+
9
+ if TYPE_CHECKING:
10
+ from endoreg_db.models.requirement.requirement import Requirement
11
+
12
+ logger = logging.getLogger(__name__)
13
+
14
+
15
+ def safe_evaluate_requirement(
16
+ requirement: "Requirement",
17
+ *args: Any,
18
+ mode: str = "strict",
19
+ **kwargs: Any,
20
+ ) -> Tuple[bool, str, str | None]:
21
+ """
22
+ Wrapper für Requirement.evaluate / evaluate_with_details, der NIE Exceptions durchlässt.
23
+
24
+ Returns:
25
+ met: bool
26
+ details: human-readable explanation (für UI)
27
+ error: technischer Fehlerstring oder None
28
+ """
29
+
30
+ try:
31
+ if hasattr(requirement, "evaluate_with_details"):
32
+ met, details = requirement.evaluate_with_details(*args, mode=mode, **kwargs)
33
+ else:
34
+ met = requirement.evaluate(*args, **kwargs)
35
+ details = "Voraussetzung erfüllt" if met else "Voraussetzung nicht erfüllt"
36
+ error = None
37
+
38
+ except RequirementEvaluationError as e:
39
+ ctx = e.context
40
+ req_obj = ctx.requirement or requirement
41
+
42
+ # sprechbarer Name aus DB (Beschreibung bevorzugen, sonst name)
43
+ display_name = (
44
+ getattr(req_obj, "description", None)
45
+ or getattr(req_obj, "name", None)
46
+ or "unbekannte Voraussetzung"
47
+ )
48
+
49
+ # falls Exception schon eine user_message mitbringt: die nehmen
50
+ if ctx.user_message:
51
+ details = ctx.user_message
52
+ else:
53
+ details = (
54
+ f"Die Voraussetzung „{display_name}“ konnte nicht ausgewertet werden."
55
+ )
56
+
57
+ # technischer Fehlerstring für Logs/Debug
58
+ error = f"{ctx.code}: {ctx.technical_message}"
59
+ logger.warning(
60
+ "Requirement '%s' (code=%s) validation error: %s",
61
+ getattr(req_obj, "name", "unknown"),
62
+ ctx.code,
63
+ ctx.technical_message,
64
+ )
65
+
66
+ met = False
67
+
68
+ except Exception as e:
69
+ met = False
70
+ display_name = getattr(requirement, "description", None) or getattr(
71
+ requirement, "name", "unbekannte Voraussetzung"
72
+ )
73
+ details = f"Bei der Auswertung der Voraussetzung „{display_name}“ ist ein interner Fehler aufgetreten."
74
+ error = f"{e.__class__.__name__}: {e}"
75
+ logger.exception(
76
+ "Requirement '%s' unexpected error",
77
+ getattr(requirement, "name", "unknown"),
78
+ )
79
+
80
+ # normalize details to string
81
+ if not isinstance(details, str):
82
+ try:
83
+ details = json.dumps(details, ensure_ascii=False, default=str)
84
+ except Exception:
85
+ details = str(details)
86
+
87
+ return bool(met), details, error
File without changes
File without changes
@@ -0,0 +1,13 @@
1
+ from .stats_views import (
2
+ ExaminationStatsView,
3
+ VideoSegmentStatsView,
4
+ SensitiveMetaStatsView,
5
+ GeneralStatsView,
6
+ )
7
+
8
+ __all__ = [
9
+ "ExaminationStatsView",
10
+ "VideoSegmentStatsView",
11
+ "SensitiveMetaStatsView",
12
+ "GeneralStatsView",
13
+ ]