endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,529 @@
1
+ """
2
+ Video Correction API Views
3
+
4
+ Provides endpoints for video analysis, masking, frame removal, and processing history.
5
+ Created as part of Phase 1.1: Video Correction API Endpoints.
6
+
7
+ Available Functions from lx_anonymizer (already implemented):
8
+ - FrameCleaner.analyze_video_sensitivity() - Frame analysis
9
+ - FrameCleaner.clean_video() - Complete anonymization
10
+ - FrameCleaner._mask_video() - FFmpeg masking
11
+ - FrameCleaner.remove_frames_from_video() - Frame removal
12
+ - VideoImportService._get_processor_roi_info() - ROI extraction
13
+ """
14
+
15
+ import json
16
+ import logging
17
+ from pathlib import Path
18
+
19
+ from django.conf import settings
20
+ from django.shortcuts import get_object_or_404
21
+ from lx_anonymizer import FrameCleaner
22
+ from rest_framework import status
23
+ from rest_framework.response import Response
24
+ from rest_framework.views import APIView
25
+
26
+ from endoreg_db.models import (
27
+ LabelVideoSegment,
28
+ VideoFile,
29
+ VideoMetadata,
30
+ VideoProcessingHistory,
31
+ )
32
+ from endoreg_db.serializers import VideoMetaSerializer, VideoProcessingHistorySerializer
33
+ from endoreg_db.serializers.video.video_file_detail import VideoDetailSerializer
34
+ from endoreg_db.utils.paths import ANONYM_VIDEO_DIR
35
+ from endoreg_db.utils.permissions import EnvironmentAwarePermission
36
+
37
+ logger = logging.getLogger(__name__)
38
+
39
+
40
+ def update_processed_file(video, output_path: Path):
41
+ try:
42
+ rel_path = output_path.relative_to(ANONYM_VIDEO_DIR)
43
+ except ValueError:
44
+ rel_path = output_path.relative_to(Path(settings.MEDIA_ROOT))
45
+ video.processed_file.name = str(rel_path)
46
+ video.save(update_fields=["processed_file"])
47
+
48
+
49
+ class VideoCorrectionView(APIView):
50
+ """
51
+ GET /api/video/media/video-correction/{id}/ - Get video details for correction
52
+ """
53
+
54
+ permission_classes = [EnvironmentAwarePermission]
55
+
56
+ def get(self, request, pk):
57
+ video = get_object_or_404(VideoFile, pk=pk)
58
+ ser = VideoDetailSerializer(video, context={"request": request})
59
+ return Response(ser.data, status=status.HTTP_200_OK)
60
+
61
+
62
+ def update_segments_after_frame_removal(video: VideoFile, removed_frames: list) -> dict:
63
+ """
64
+ Update LabelVideoSegment frame boundaries after frame removal.
65
+
66
+ This function shifts segment start/end frames based on which frames were removed.
67
+ Segments are deleted if all their frames are removed.
68
+
69
+ Args:
70
+ video: VideoFile instance whose segments should be updated
71
+ removed_frames: List of frame numbers that were removed (sorted)
72
+
73
+ Returns:
74
+ dict: {
75
+ 'segments_updated': int,
76
+ 'segments_deleted': int,
77
+ 'segments_unchanged': int
78
+ }
79
+
80
+ Algorithm:
81
+ For each segment:
82
+ 1. Count frames removed before segment → shift start_frame
83
+ 2. Count frames removed within segment → shift end_frame
84
+ 3. Delete segment if start_frame >= end_frame (all frames removed)
85
+
86
+ Example:
87
+ Original segment: frames 100-200
88
+ Removed frames: [50, 75, 120, 150, 180]
89
+
90
+ Frames before segment (< 100): 2 frames (50, 75)
91
+ Frames within segment (100-200): 3 frames (120, 150, 180)
92
+
93
+ New segment: frames (100-2) to (200-2-3) = 98-195
94
+ """
95
+ if not removed_frames:
96
+ return {"segments_updated": 0, "segments_deleted": 0, "segments_unchanged": 0}
97
+
98
+ removed_frames = sorted(set(removed_frames)) # Ensure sorted and unique
99
+ segments = LabelVideoSegment.objects.filter(video_file=video).order_by(
100
+ "start_frame_number"
101
+ )
102
+
103
+ segments_updated = 0
104
+ segments_deleted = 0
105
+ segments_unchanged = 0
106
+
107
+ for segment in segments:
108
+ original_start = segment.start_frame_number
109
+ original_end = segment.end_frame_number
110
+
111
+ # Count frames removed before this segment
112
+ frames_before = sum(1 for f in removed_frames if f < original_start)
113
+
114
+ # Count frames removed within this segment
115
+ frames_within = sum(
116
+ 1 for f in removed_frames if original_start <= f <= original_end
117
+ )
118
+
119
+ # Calculate new boundaries
120
+ new_start = original_start - frames_before
121
+ new_end = original_end - frames_before - frames_within
122
+
123
+ # Delete segment if all frames were removed
124
+ if new_start >= new_end:
125
+ logger.info(
126
+ f"Deleting segment {segment.pk} (original: {original_start}-{original_end}) "
127
+ f"- all {frames_within} frames removed"
128
+ )
129
+ segment.delete()
130
+ segments_deleted += 1
131
+ elif new_start != original_start or new_end != original_end:
132
+ # Update segment boundaries
133
+ logger.info(
134
+ f"Updating segment {segment.pk}: "
135
+ f"{original_start}-{original_end} → {new_start}-{new_end} "
136
+ f"(before: {frames_before}, within: {frames_within})"
137
+ )
138
+ segment.start_frame_number = new_start
139
+ segment.end_frame_number = new_end
140
+ segment.save(update_fields=["start_frame_number", "end_frame_number"])
141
+ segments_updated += 1
142
+ else:
143
+ # No change needed
144
+ segments_unchanged += 1
145
+
146
+ logger.info(
147
+ f"Segment update complete for video {video.pk}: "
148
+ f"{segments_updated} updated, {segments_deleted} deleted, {segments_unchanged} unchanged"
149
+ )
150
+
151
+ return {
152
+ "segments_updated": segments_updated,
153
+ "segments_deleted": segments_deleted,
154
+ "segments_unchanged": segments_unchanged,
155
+ }
156
+
157
+
158
+
159
+
160
+ class VideoProcessingHistoryView(APIView):
161
+ """
162
+ GET /api/media/videos/{pk}/processing-history/
163
+
164
+ Retrieve processing history for a video.
165
+
166
+ Returns list of processing operations:
167
+ [
168
+ {
169
+ "id": 1,
170
+ "video": 123,
171
+ "operation": "mask_overlay",
172
+ "operation_display": "Mask Overlay",
173
+ "status": "success",
174
+ "status_display": "Success",
175
+ "config": {"mask_type": "device", "device_name": "olympus"},
176
+ "output_file": "/path/to/masked_video.mp4",
177
+ "download_url": "/api/media/processed-videos/123/1/",
178
+ "details": "",
179
+ "task_id": "abc-123-def",
180
+ "created_at": "2025-10-09T10:00:00Z",
181
+ "completed_at": "2025-10-09T10:05:00Z",
182
+ "duration": 300.5,
183
+ "is_complete": true
184
+ },
185
+ ...
186
+ ]
187
+ """
188
+
189
+ def get(self, request, pk):
190
+ """Get processing history for a video."""
191
+ video = get_object_or_404(VideoFile, pk=pk)
192
+
193
+ # Get all history records, newest first
194
+ history = VideoProcessingHistory.objects.filter(video=video).order_by(
195
+ "-created_at"
196
+ )
197
+
198
+ serializer = VideoProcessingHistorySerializer(
199
+ history, many=True, context={"request": request}
200
+ )
201
+ return Response(serializer.data)
202
+
203
+
204
+ class VideoApplyMaskView(APIView):
205
+ """
206
+ POST /api/media/videos/{pk}/apply-mask/
207
+
208
+ Apply device mask or custom ROI mask to video.
209
+
210
+ Request body:
211
+ {
212
+ "mask_type": "device", // or "custom"
213
+ "device_name": "olympus", // required if mask_type=device
214
+ "roi": { // required if mask_type=custom
215
+ "x": 550,
216
+ "y": 0,
217
+ "width": 1350,
218
+ "height": 1080
219
+ },
220
+ "processing_method": "streaming" // or "direct" (default: streaming)
221
+ }
222
+
223
+ Returns:
224
+ {
225
+ "task_id": "abc-123-def", // Celery task ID (future)
226
+ "output_file": "/path/to/masked_video.mp4",
227
+ "message": "Masking complete",
228
+ "processing_time": 125.5
229
+ }
230
+
231
+ Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
232
+ """
233
+
234
+ def post(self, request, pk):
235
+ """Apply masking to video."""
236
+ video = get_object_or_404(VideoFile, pk=pk)
237
+
238
+ # Extract parameters
239
+ mask_type = request.data.get("mask_type", "device")
240
+ device_name = request.data.get("device_name")
241
+ roi = request.data.get("roi")
242
+ processing_method = request.data.get("processing_method", "streaming")
243
+
244
+ # Validate required parameters
245
+ if mask_type == "device" and not device_name:
246
+ return Response(
247
+ {"error": "device_name required for device mask"},
248
+ status=status.HTTP_400_BAD_REQUEST,
249
+ )
250
+
251
+ if mask_type == "custom" and not roi:
252
+ return Response(
253
+ {"error": "roi required for custom mask"},
254
+ status=status.HTTP_400_BAD_REQUEST,
255
+ )
256
+
257
+ # Create processing history record
258
+ history = VideoProcessingHistory.objects.create(
259
+ video=video,
260
+ operation=VideoProcessingHistory.OPERATION_MASKING,
261
+ status=VideoProcessingHistory.STATUS_PENDING,
262
+ config={
263
+ "mask_type": mask_type,
264
+ "device_name": device_name,
265
+ "roi": roi,
266
+ "processing_method": processing_method,
267
+ },
268
+ )
269
+
270
+ try:
271
+ history.mark_running()
272
+
273
+ # Initialize FrameCleaner
274
+ frame_cleaner = FrameCleaner()
275
+
276
+ # Get video paths
277
+ video_path = (
278
+ Path(video.raw_file.path)
279
+ if hasattr(video.raw_file, "path")
280
+ else Path(str(video.raw_file))
281
+ )
282
+ output_path = video.get_output_path()
283
+ output_path.parent.mkdir(parents=True, exist_ok=True)
284
+
285
+ # Load or create mask config
286
+ if mask_type == "device":
287
+ # Load device-specific mask from lx_anonymizer/masks/
288
+ mask_config = frame_cleaner._load_mask(device_name)
289
+ else: # custom
290
+ # Convert ROI to mask config
291
+ mask_config = frame_cleaner._create_mask_config_from_roi(
292
+ endoscope_roi=roi,
293
+ )
294
+
295
+ # Apply mask (uses existing FrameCleaner._mask_video)
296
+ import time
297
+
298
+ start_time = time.time()
299
+
300
+ success = frame_cleaner._mask_video(
301
+ input_video=video_path,
302
+ mask_config=mask_config,
303
+ output_video=output_path,
304
+ )
305
+
306
+ processing_time = time.time() - start_time
307
+
308
+ if success:
309
+ # Update video record with anonymized file
310
+
311
+ processed_file_path = output_path
312
+ update_processed_file(video, processed_file_path)
313
+ # Mark history as success
314
+ history.mark_success(
315
+ output_file=str(output_path),
316
+ details=f"Masking completed in {processing_time:.1f}s",
317
+ )
318
+
319
+ logger.info(f"Video {pk} masked successfully: {output_path}")
320
+
321
+ return Response(
322
+ {
323
+ "task_id": None, # Will be Celery task ID in Phase 1.2
324
+ "output_file": str(output_path),
325
+ "message": "Masking complete",
326
+ "processing_time": processing_time,
327
+ }
328
+ )
329
+ else:
330
+ raise Exception("Masking failed - check FFmpeg logs")
331
+
332
+ except Exception as e:
333
+ logger.error(f"Video masking failed for {pk}: {str(e)}", exc_info=True)
334
+
335
+ history.mark_failure(str(e))
336
+
337
+ return Response(
338
+ {"error": f"Masking failed: {str(e)}"},
339
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
340
+ )
341
+
342
+
343
+ class VideoRemoveFramesView(APIView):
344
+ """
345
+ POST /api/media/videos/{pk}/remove-frames/
346
+
347
+ Remove specified frames from video.
348
+
349
+ Request body:
350
+ {
351
+ "frame_list": [10, 15, 20, 30], // explicit frame numbers
352
+ // OR
353
+ "frame_ranges": "10-20,30,45-50", // range string
354
+ // OR
355
+ "detection_method": "automatic", // use analysis results
356
+
357
+ "processing_method": "streaming" // or "traditional"
358
+ }
359
+
360
+ Returns:
361
+ {
362
+ "task_id": "abc-123-def",
363
+ "output_file": "/path/to/cleaned_video.mp4",
364
+ "frames_removed": 42,
365
+ "message": "Frame removal complete",
366
+ "processing_time": 180.3
367
+ }
368
+
369
+ Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
370
+ """
371
+
372
+ def post(self, request, pk):
373
+ """Remove frames from video."""
374
+ video = get_object_or_404(VideoFile, pk=pk)
375
+
376
+ # Extract parameters
377
+ frame_list = request.data.get("frame_list")
378
+ frame_ranges = request.data.get("frame_ranges")
379
+ detection_method = request.data.get("detection_method")
380
+ processing_method = request.data.get("processing_method", "streaming")
381
+
382
+ # Determine frames to remove
383
+ frames_to_remove = []
384
+
385
+ if frame_list:
386
+ frames_to_remove = frame_list
387
+ elif frame_ranges:
388
+ frames_to_remove = self._parse_frame_ranges(frame_ranges)
389
+ elif detection_method == "automatic":
390
+ # Use existing analysis results
391
+ try:
392
+ metadata = VideoMetadata.objects.get(video=video)
393
+ if metadata.sensitive_frame_ids:
394
+ frames_to_remove = json.loads(metadata.sensitive_frame_ids)
395
+ else:
396
+ return Response(
397
+ {"error": "No analysis results available. Run analysis first."},
398
+ status=status.HTTP_400_BAD_REQUEST,
399
+ )
400
+ except VideoMetadata.DoesNotExist:
401
+ return Response(
402
+ {"error": "Video not analyzed. Run analysis first."},
403
+ status=status.HTTP_400_BAD_REQUEST,
404
+ )
405
+ else:
406
+ return Response(
407
+ {
408
+ "error": "Must provide frame_list, frame_ranges, or detection_method=automatic"
409
+ },
410
+ status=status.HTTP_400_BAD_REQUEST,
411
+ )
412
+
413
+ if not frames_to_remove:
414
+ return Response(
415
+ {"error": "No frames to remove"}, status=status.HTTP_400_BAD_REQUEST
416
+ )
417
+
418
+ # Create processing history record
419
+ history = VideoProcessingHistory.objects.create(
420
+ video=video,
421
+ operation=VideoProcessingHistory.OPERATION_FRAME_REMOVAL,
422
+ status=VideoProcessingHistory.STATUS_PENDING,
423
+ config={
424
+ "frames_to_remove": frames_to_remove,
425
+ "frame_count": len(frames_to_remove),
426
+ "processing_method": processing_method,
427
+ },
428
+ )
429
+
430
+ try:
431
+ history.mark_running()
432
+
433
+ # Initialize FrameCleaner
434
+ frame_cleaner = FrameCleaner()
435
+
436
+ # Get video paths
437
+ video_path = (
438
+ Path(video.raw_file.path)
439
+ if hasattr(video.raw_file, "path")
440
+ else Path(str(video.raw_file))
441
+ )
442
+ output_path = (
443
+ Path(settings.MEDIA_ROOT)
444
+ / "anonym_videos"
445
+ / f"{video.video_hash}_cleaned.mp4"
446
+ )
447
+ output_path.parent.mkdir(parents=True, exist_ok=True)
448
+
449
+ # Remove frames (uses existing FrameCleaner.remove_frames_from_video)
450
+ import time
451
+
452
+ start_time = time.time()
453
+
454
+ success = frame_cleaner.remove_frames_from_video(
455
+ original_video=video_path,
456
+ frames_to_remove=frames_to_remove,
457
+ output_video=output_path,
458
+ )
459
+
460
+ processing_time = time.time() - start_time
461
+
462
+ if success:
463
+ # Update video record
464
+ update_processed_file(video, output_path)
465
+
466
+ # Phase 1.4: Update LabelVideoSegments (shift frame numbers)
467
+ segment_update_result = update_segments_after_frame_removal(
468
+ video, frames_to_remove
469
+ )
470
+
471
+ # Mark history as success with segment update info
472
+ details_parts = [
473
+ f"Removed {len(frames_to_remove)} frames in {processing_time:.1f}s"
474
+ ]
475
+ if segment_update_result["segments_updated"] > 0:
476
+ details_parts.append(
477
+ f"Updated {segment_update_result['segments_updated']} segments"
478
+ )
479
+ if segment_update_result["segments_deleted"] > 0:
480
+ details_parts.append(
481
+ f"Deleted {segment_update_result['segments_deleted']} segments (all frames removed)"
482
+ )
483
+
484
+ history.mark_success(
485
+ output_file=str(output_path), details="; ".join(details_parts)
486
+ )
487
+
488
+ logger.info(
489
+ f"Video {pk} cleaned: removed {len(frames_to_remove)} frames"
490
+ )
491
+
492
+ return Response(
493
+ {
494
+ "task_id": None, # Will be Celery task ID in Phase 1.2
495
+ "output_file": str(output_path),
496
+ "frames_removed": len(frames_to_remove),
497
+ "segment_updates": segment_update_result,
498
+ "message": "Frame removal complete",
499
+ "processing_time": processing_time,
500
+ }
501
+ )
502
+ else:
503
+ raise Exception("Frame removal failed - check FFmpeg logs")
504
+
505
+ except Exception as e:
506
+ logger.error(f"Frame removal failed for {pk}: {str(e)}", exc_info=True)
507
+
508
+ history.mark_failure(str(e))
509
+
510
+ return Response(
511
+ {"error": f"Frame removal failed: {str(e)}"},
512
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
513
+ )
514
+
515
+ def _parse_frame_ranges(self, ranges_str: str) -> list:
516
+ """
517
+ Parse frame ranges string to list of frame numbers.
518
+
519
+ Example: "10-20,30,45-50" -> [10,11,...,20,30,45,...,50]
520
+ """
521
+ frames = []
522
+ for part in ranges_str.split(","):
523
+ part = part.strip()
524
+ if "-" in part:
525
+ start, end = map(int, part.split("-"))
526
+ frames.extend(range(start, end + 1))
527
+ else:
528
+ frames.append(int(part))
529
+ return sorted(set(frames)) # Remove duplicates and sort