endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,709 @@
1
+ """
2
+ Modern Media Framework - Video Segments Views
3
+ Migrated from legacy label_video_segment views (October 14, 2025)
4
+
5
+ Provides RESTful endpoints for video segment management:
6
+ - Collection: GET/POST /api/media/videos/segments/
7
+ - Detail: GET/PATCH/DELETE /api/media/videos/<pk>/segments/<segment_id>/
8
+ - Video-specific: GET/POST /api/media/videos/<pk>/segments/
9
+ """
10
+
11
+ import logging
12
+
13
+ from django.db import transaction
14
+ from django.db.models import Count
15
+ from django.shortcuts import get_object_or_404
16
+ from rest_framework import status
17
+ from rest_framework.decorators import api_view, permission_classes
18
+ from rest_framework.response import Response
19
+
20
+ from endoreg_db.models import Label, LabelVideoSegment, VideoFile
21
+ from endoreg_db.serializers.label_video_segment.label_video_segment import (
22
+ LabelVideoSegmentSerializer,
23
+ )
24
+ from endoreg_db.utils.permissions import EnvironmentAwarePermission
25
+
26
+ from endoreg_db.utils.operation_log import (
27
+ record_operation,
28
+ ACTION_SEGMENT_ANNOTATED,
29
+ STATUS_VALIDATED,
30
+ STATUS_UNVALIDATED,
31
+ )
32
+
33
+
34
+
35
+ logger = logging.getLogger(__name__)
36
+
37
+
38
+ @api_view(["GET"])
39
+ @permission_classes([EnvironmentAwarePermission])
40
+ def video_segments_stats(request):
41
+ """
42
+ Statistics endpoint for video segments.
43
+
44
+ GET /api/media/videos/segments/stats/
45
+ Returns aggregated statistics about video segments.
46
+ """
47
+ try:
48
+ # Get all segments queryset
49
+ segments = LabelVideoSegment.objects.all()
50
+
51
+ # Calculate statistics
52
+ total_segments = segments.count()
53
+
54
+ # Segments by label
55
+ label_counts = segments.values("label__name").annotate(count=Count("id"))
56
+
57
+ # Videos with segments
58
+ videos_with_segments = segments.values("video_file").distinct().count()
59
+
60
+ stats = {
61
+ "total_segments": total_segments,
62
+ "videos_with_segments": videos_with_segments,
63
+ "by_label": {
64
+ item["label__name"]: item["count"]
65
+ for item in label_counts
66
+ if item["label__name"]
67
+ },
68
+ }
69
+
70
+ return Response(stats, status=status.HTTP_200_OK)
71
+
72
+ except Exception as e:
73
+ logger.error(f"Error fetching video segment stats: {e}")
74
+ return Response(
75
+ {"error": "Failed to fetch segment statistics"},
76
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
77
+ )
78
+
79
+
80
+ @api_view(["GET", "POST"])
81
+ @permission_classes([EnvironmentAwarePermission])
82
+ def video_segments_collection(request):
83
+ """
84
+ Collection endpoint for all video segments across all videos.
85
+
86
+ GET /api/media/videos/segments/
87
+ - Lists all segments, optionally filtered by video_id and/or label_id
88
+ - Query params: video_id, label_id
89
+
90
+ POST /api/media/videos/segments/
91
+ - Creates a new video segment
92
+ - Requires: video_id, label_id, start_frame_number, end_frame_number
93
+
94
+ Modern replacement for: /api/video-segments/
95
+ """
96
+ if request.method == "POST":
97
+ logger.info(f"Creating new video segment with data: {request.data}")
98
+
99
+ with transaction.atomic():
100
+ serializer = LabelVideoSegmentSerializer(data=request.data)
101
+ if serializer.is_valid():
102
+ try:
103
+ segment = serializer.save()
104
+ logger.info(f"Successfully created video segment {segment.pk}")
105
+ return Response(
106
+ LabelVideoSegmentSerializer(segment).data,
107
+ status=status.HTTP_201_CREATED,
108
+ )
109
+ except Exception as e:
110
+ logger.error(f"Error creating video segment: {str(e)}")
111
+ return Response(
112
+ {"error": f"Failed to create segment: {str(e)}"},
113
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
114
+ )
115
+ else:
116
+ logger.warning(
117
+ f"Invalid data for video segment creation: {serializer.errors}"
118
+ )
119
+ return Response(
120
+ {"error": "Invalid data", "details": serializer.errors},
121
+ status=status.HTTP_400_BAD_REQUEST,
122
+ )
123
+
124
+ elif request.method == "GET":
125
+ # Optional filtering by video_id
126
+ video_id = request.GET.get("video_id")
127
+ label_id = request.GET.get("label_id")
128
+
129
+ queryset = LabelVideoSegment.objects.all()
130
+
131
+ if video_id:
132
+ try:
133
+ video = VideoFile.objects.get(id=video_id)
134
+ queryset = queryset.filter(video_file=video)
135
+ except VideoFile.DoesNotExist:
136
+ return Response(
137
+ {"error": f"Video with id {video_id} not found"},
138
+ status=status.HTTP_404_NOT_FOUND,
139
+ )
140
+
141
+ if label_id:
142
+ try:
143
+ label = Label.objects.get(id=label_id)
144
+ queryset = queryset.filter(label=label)
145
+ except Label.DoesNotExist:
146
+ return Response(
147
+ {"error": f"Label with id {label_id} not found"},
148
+ status=status.HTTP_404_NOT_FOUND,
149
+ )
150
+
151
+ # Order by video and start time for consistent results
152
+ segments = queryset.order_by("video_file__id", "start_frame_number")
153
+ serializer = LabelVideoSegmentSerializer(segments, many=True)
154
+ return Response(serializer.data)
155
+
156
+
157
+ @api_view(["GET", "POST"])
158
+ @permission_classes([EnvironmentAwarePermission])
159
+ def video_segments_by_video(request, pk):
160
+ """
161
+ Video-specific segments endpoint.
162
+
163
+ GET /api/media/videos/<pk>/segments/
164
+ - Lists all segments for a specific video
165
+ - Query params: label (label name filter)
166
+ - Note: This was already implemented in segments.py as video_segments_by_pk
167
+
168
+ POST /api/media/videos/<pk>/segments/
169
+ - Creates a new segment for this video
170
+ - Automatically sets video_id to pk
171
+ - Requires: label_id, start_frame_number, end_frame_number
172
+
173
+ Modern replacement for: /api/video-segments/?video_id=<pk>
174
+ """
175
+ # Verify video exists
176
+ video = get_object_or_404(VideoFile, id=pk)
177
+
178
+ if request.method == "GET":
179
+ # This duplicates video_segments_by_pk functionality
180
+ # We keep both for compatibility during migration
181
+ label_name = request.GET.get("label")
182
+
183
+ queryset = LabelVideoSegment.objects.filter(video_file=video)
184
+
185
+ if label_name:
186
+ try:
187
+ label = Label.objects.get(name=label_name)
188
+ queryset = queryset.filter(label=label)
189
+ except Label.DoesNotExist:
190
+ return Response(
191
+ {"error": f'Label "{label_name}" not found'},
192
+ status=status.HTTP_404_NOT_FOUND,
193
+ )
194
+
195
+ segments = queryset.order_by("start_frame_number")
196
+ serializer = LabelVideoSegmentSerializer(segments, many=True)
197
+ return Response(serializer.data)
198
+
199
+ elif request.method == "POST":
200
+ logger.info(f"Creating new segment for video {pk} with data: {request.data}")
201
+
202
+ # Automatically set video_id to pk
203
+ data = request.data.copy()
204
+ data["video_id"] = pk
205
+
206
+ with transaction.atomic():
207
+ serializer = LabelVideoSegmentSerializer(data=data)
208
+ if serializer.is_valid():
209
+ try:
210
+ segment = serializer.save()
211
+ logger.info(
212
+ f"Successfully created segment {segment.pk} for video {pk}"
213
+ )
214
+ return Response(
215
+ LabelVideoSegmentSerializer(segment).data,
216
+ status=status.HTTP_201_CREATED,
217
+ )
218
+ except Exception as e:
219
+ logger.error(f"Error creating segment for video {pk}: {str(e)}")
220
+ return Response(
221
+ {"error": f"Failed to create segment: {str(e)}"},
222
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
223
+ )
224
+ else:
225
+ logger.warning(
226
+ f"Invalid data for segment creation: {serializer.errors}"
227
+ )
228
+ return Response(
229
+ {"error": "Invalid data", "details": serializer.errors},
230
+ status=status.HTTP_400_BAD_REQUEST,
231
+ )
232
+
233
+
234
+ @api_view(["GET", "PATCH", "DELETE"])
235
+ @permission_classes([EnvironmentAwarePermission])
236
+ def video_segment_detail(request, pk, segment_id):
237
+ """
238
+ Detail endpoint for a specific video segment.
239
+
240
+ GET /api/media/videos/<pk>/segments/<segment_id>/
241
+ - Returns segment details
242
+
243
+ PATCH /api/media/videos/<pk>/segments/<segment_id>/
244
+ - Updates segment (partial update)
245
+
246
+ DELETE /api/media/videos/<pk>/segments/<segment_id>/
247
+ - Deletes segment
248
+
249
+ Modern replacement for: /api/video-segments/<segment_id>/
250
+ """
251
+ # Verify video exists
252
+ video = get_object_or_404(VideoFile, id=pk)
253
+
254
+ # Get segment and verify it belongs to this video
255
+ segment = get_object_or_404(LabelVideoSegment, id=segment_id, video_file=video)
256
+
257
+ if request.method == "GET":
258
+ serializer = LabelVideoSegmentSerializer(segment)
259
+ return Response(serializer.data)
260
+
261
+ elif request.method == "PATCH":
262
+ logger.info(
263
+ f"Updating segment {segment_id} for video {pk} with data: {request.data}"
264
+ )
265
+
266
+ with transaction.atomic():
267
+ serializer = LabelVideoSegmentSerializer(
268
+ segment, data=request.data, partial=True
269
+ )
270
+ if serializer.is_valid():
271
+ try:
272
+ segment = serializer.save()
273
+ logger.info(f"Successfully updated segment {segment_id}")
274
+ return Response(LabelVideoSegmentSerializer(segment).data)
275
+ except Exception as e:
276
+ logger.error(f"Error updating segment {segment_id}: {str(e)}")
277
+ return Response(
278
+ {"error": f"Failed to update segment: {str(e)}"},
279
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
280
+ )
281
+ else:
282
+ logger.warning(f"Invalid data for segment update: {serializer.errors}")
283
+ return Response(
284
+ {"error": "Invalid data", "details": serializer.errors},
285
+ status=status.HTTP_400_BAD_REQUEST,
286
+ )
287
+
288
+ elif request.method == "DELETE":
289
+ logger.info(f"Deleting segment {segment_id} from video {pk}")
290
+ try:
291
+ with transaction.atomic():
292
+ segment.delete()
293
+ logger.info(f"Successfully deleted segment {segment_id}")
294
+ return Response(
295
+ {"message": f"Segment {segment_id} deleted successfully"},
296
+ status=status.HTTP_204_NO_CONTENT,
297
+ )
298
+ except Exception as e:
299
+ logger.error(f"Error deleting segment {segment_id}: {str(e)}")
300
+ return Response(
301
+ {"error": f"Failed to delete segment: {str(e)}"},
302
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
303
+ )
304
+
305
+
306
+ # ============================================================================
307
+ # VIDEO SEGMENT VALIDATION ENDPOINTS (Modern Framework)
308
+ # Migrated from /api/label-video-segment/*/validate/ (October 14, 2025)
309
+ # ============================================================================
310
+
311
+
312
+ @api_view(["POST"])
313
+ @permission_classes([EnvironmentAwarePermission])
314
+ def video_segment_validate(request, pk: int, segment_id: int):
315
+ """
316
+ Validate a single video segment.
317
+
318
+ POST /api/media/videos/<pk>/segments/<segment_id>/validate/
319
+
320
+ Validates a single LabelVideoSegment and marks it as verified.
321
+ Used to confirm user-reviewed segment annotations.
322
+
323
+ Request Body (optional):
324
+ {
325
+ "is_validated": true, // optional, default true
326
+ "notes": "..." // optional, validation notes
327
+ }
328
+
329
+ Response:
330
+ {
331
+ "message": "Segment validated successfully",
332
+ "segment_id": 123,
333
+ "is_validated": true,
334
+ "label": "polyp",
335
+ "video_id": 456,
336
+ "start_frame": 100,
337
+ "end_frame": 200
338
+ }
339
+ """
340
+ # Verify video exists
341
+ video = get_object_or_404(VideoFile, pk=pk)
342
+
343
+ segment = get_object_or_404(
344
+ LabelVideoSegment.objects.select_related("state", "video_file", "label"),
345
+ pk=segment_id,
346
+ video_file=video,
347
+ )
348
+
349
+
350
+ #for operation log table
351
+ status_before = STATUS_VALIDATED if (segment.state and segment.state.is_validated) else STATUS_UNVALIDATED
352
+
353
+
354
+ try:
355
+ is_validated = request.data.get("is_validated", True)
356
+ notes = request.data.get("notes", "")
357
+ information_source_name = request.data.get(
358
+ "information_source_name", "manual_annotation"
359
+ )
360
+
361
+ # Optional: update times (seconds) before validation
362
+ start_time = request.data.get("start_time")
363
+ end_time = request.data.get("end_time")
364
+
365
+ with transaction.atomic():
366
+ if start_time is not None and end_time is not None:
367
+ fps = segment.video_file.get_fps() or 0
368
+ if fps > 0:
369
+ new_start = int(round(float(start_time) * fps))
370
+ new_end = int(round(float(end_time) * fps))
371
+ LabelVideoSegment.validate_frame_range(
372
+ new_start, new_end, video_file=segment.video_file
373
+ )
374
+ segment.start_frame_number = new_start
375
+ segment.end_frame_number = new_end
376
+ segment.save(
377
+ update_fields=["start_frame_number", "end_frame_number"]
378
+ )
379
+
380
+ segment.mark_validated(
381
+ is_validated=is_validated,
382
+ information_source_name=information_source_name,
383
+ )
384
+
385
+ status_after = STATUS_VALIDATED if is_validated else STATUS_UNVALIDATED
386
+
387
+ record_operation(
388
+ request,
389
+ action=ACTION_SEGMENT_ANNOTATED,
390
+ resource_type="video_segment",
391
+ resource_id=segment.id,
392
+ status_before=status_before,
393
+ status_after=status_after,
394
+ meta={
395
+ "video_id": video.id,
396
+ "label": segment.label.name if segment.label else None,
397
+ "information_source": information_source_name,
398
+ },
399
+ )
400
+
401
+
402
+ logger.info(f"Validated segment {segment_id} in video {pk}: {is_validated}")
403
+
404
+ return Response(
405
+ {
406
+ "message": f"Segment {segment_id} validation status updated",
407
+ "segment_id": segment_id,
408
+ "is_validated": is_validated,
409
+ "label": segment.label.name if segment.label else None,
410
+ "video_id": video.id,
411
+ "start_frame": segment.start_frame_number,
412
+ "end_frame": segment.end_frame_number,
413
+ },
414
+ status=status.HTTP_200_OK,
415
+ )
416
+
417
+ except Exception as e:
418
+ logger.error(f"Error validating segment {segment_id} in video {pk}: {e}")
419
+ return Response(
420
+ {"error": f"Validation failed: {str(e)}"},
421
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
422
+ )
423
+
424
+
425
+ # TODO Pass user based information source to backend. This is the endpoint currently used by the VideoExamination endpoint
426
+ @api_view(["POST"])
427
+ @permission_classes([EnvironmentAwarePermission])
428
+ def video_segments_validate_bulk(request, pk: int):
429
+ """
430
+ Validate multiple video segments at once.
431
+
432
+ POST /api/media/videos/<pk>/segments/validate-bulk/
433
+
434
+ Body:
435
+ {
436
+ "segment_ids": [1, 2, 3, ...],
437
+ "segments": [
438
+ {"id": 1, "start_time": 12.3, "end_time": 15.7},
439
+ ...
440
+ ],
441
+ "is_validated": true,
442
+ "notes": "...",
443
+ "information_source_name": "manual_annotation"
444
+ }
445
+ """
446
+ video = get_object_or_404(VideoFile, pk=pk)
447
+
448
+ segment_ids = request.data.get("segment_ids", [])
449
+ is_validated = request.data.get("is_validated", True)
450
+ notes = request.data.get("notes", "")
451
+ information_source_name = request.data.get(
452
+ "information_source_name", "manual_annotation"
453
+ )
454
+ if notes:
455
+ logger.info(f"Segment Validiert ${notes}")
456
+ if not segment_ids:
457
+ return Response(
458
+ {"error": "segment_ids is required"}, status=status.HTTP_400_BAD_REQUEST
459
+ )
460
+
461
+ # optional per-segment timing info (seconds)
462
+ segments_data_list = request.data.get("segments", []) or []
463
+ segments_data = {int(s["id"]): s for s in segments_data_list if "id" in s}
464
+
465
+ try:
466
+ segments = LabelVideoSegment.objects.filter(
467
+ pk__in=segment_ids, video_file=video
468
+ ).select_related("state", "video_file")
469
+
470
+ if not segments.exists():
471
+ return Response(
472
+ {"error": "No segments found with provided IDs for this video"},
473
+ status=status.HTTP_404_NOT_FOUND,
474
+ )
475
+
476
+ updated_count = 0
477
+ failed_ids = []
478
+
479
+ with transaction.atomic():
480
+ for segment in segments:
481
+ try:
482
+ # 1) optionally update times from payload
483
+ data = segments_data.get(segment.id)
484
+ if data is not None:
485
+ start_time = data.get("start_time")
486
+ end_time = data.get("end_time")
487
+ if start_time is not None and end_time is not None:
488
+ fps = segment.video_file.get_fps() or 0
489
+ if fps > 0:
490
+ new_start = int(round(float(start_time) * fps))
491
+ new_end = int(round(float(end_time) * fps))
492
+ LabelVideoSegment.validate_frame_range(
493
+ new_start, new_end, video_file=segment.video_file
494
+ )
495
+ segment.start_frame_number = new_start
496
+ segment.end_frame_number = new_end
497
+ segment.save(
498
+ update_fields=[
499
+ "start_frame_number",
500
+ "end_frame_number",
501
+ ]
502
+ )
503
+
504
+ status_before = (
505
+ STATUS_VALIDATED
506
+ if (segment.state and segment.state.is_validated)
507
+ else STATUS_UNVALIDATED
508
+ )
509
+
510
+
511
+ # 2) mark as validated + update information source + notes
512
+ segment.mark_validated(
513
+ is_validated=is_validated,
514
+ information_source_name=str(information_source_name)
515
+ if is_validated
516
+ else str(None),
517
+ )
518
+ updated_count += 1
519
+
520
+
521
+
522
+ status_after = STATUS_VALIDATED if is_validated else STATUS_UNVALIDATED
523
+
524
+
525
+ record_operation(
526
+ request,
527
+ action=ACTION_SEGMENT_ANNOTATED,
528
+ resource_type="video_segment",
529
+ resource_id=segment.id,
530
+ status_before=status_before,
531
+ status_after=status_after,
532
+ meta={
533
+ "video_id": pk,
534
+ "bulk": True,
535
+ "information_source": information_source_name,
536
+ },
537
+ )
538
+
539
+
540
+ except Exception as e:
541
+ logger.error(f"Error validating segment {segment.id}: {e}")
542
+ failed_ids.append(segment.id)
543
+
544
+ logger.info(f"Bulk validated {updated_count} segments in video {pk}")
545
+
546
+ response_data = {
547
+ "message": f"Bulk validation completed. {updated_count} segments updated.",
548
+ "updated_count": updated_count,
549
+ "requested_count": len(segment_ids),
550
+ "is_validated": is_validated,
551
+ "video_id": pk,
552
+ }
553
+
554
+ if failed_ids:
555
+ response_data["failed_ids"] = failed_ids
556
+ response_data["warning"] = (
557
+ f"{len(failed_ids)} segments could not be validated"
558
+ )
559
+
560
+ return Response(response_data, status=status.HTTP_200_OK)
561
+
562
+ except Exception as e:
563
+ logger.error(f"Error in bulk validation for video {pk}: {e}")
564
+ return Response(
565
+ {"error": f"Bulk validation failed: {str(e)}"},
566
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR,
567
+ )
568
+
569
+
570
+ @api_view(["GET", "POST"])
571
+ @permission_classes([EnvironmentAwarePermission])
572
+ def video_segments_validation_status(request, pk: int):
573
+ """
574
+ Get or update validation status for all segments of a video.
575
+
576
+ GET /api/media/videos/<pk>/segments/validation-status/
577
+ Returns validation statistics for all segments.
578
+
579
+ POST /api/media/videos/<pk>/segments/validation-status/
580
+ Marks all segments (or filtered by label) as validated.
581
+
582
+ Query Parameters (GET):
583
+ - label_name: filter by label (optional)
584
+
585
+ Request Body (POST, optional):
586
+ {
587
+ "label_name": "...", // optional, only validate segments with this label
588
+ "notes": "..." // optional
589
+ }
590
+
591
+ Response (GET):
592
+ {
593
+ "video_id": 123,
594
+ "total_segments": 10,
595
+ "validated_count": 7,
596
+ "unvalidated_count": 3,
597
+ "validation_complete": false,
598
+ "by_label": {...}
599
+ }
600
+
601
+ Response (POST):
602
+ {
603
+ "message": "Video segment validation completed",
604
+ "video_id": 123,
605
+ "total_segments": 10,
606
+ "updated_count": 10,
607
+ "failed_count": 0
608
+ }
609
+ """
610
+ # Verify video exists
611
+ video = get_object_or_404(VideoFile, pk=pk)
612
+
613
+ if request.method == "GET":
614
+ # Get validation status
615
+ label_name = request.query_params.get("label_name")
616
+
617
+ segments_query = LabelVideoSegment.objects.filter(
618
+ video_file=video
619
+ ).select_related("state", "label")
620
+
621
+ if label_name:
622
+ segments_query = segments_query.filter(label__name=label_name)
623
+
624
+ segments = segments_query.all()
625
+ total_count = segments.count()
626
+
627
+ # Count validated segments
628
+ validated_count = sum(1 for s in segments if s.state and s.state.is_validated)
629
+
630
+ # By label breakdown
631
+ by_label = {}
632
+ for segment in segments:
633
+ label = segment.label.name if segment.label else "unknown"
634
+ if label not in by_label:
635
+ by_label[label] = {"total": 0, "validated": 0}
636
+ by_label[label]["total"] += 1
637
+ if segment.state and segment.state.is_validated:
638
+ by_label[label]["validated"] += 1
639
+
640
+ return Response(
641
+ {
642
+ "video_id": pk,
643
+ "total_segments": total_count,
644
+ "validated_count": validated_count,
645
+ "unvalidated_count": total_count - validated_count,
646
+ "validation_complete": validated_count == total_count
647
+ and total_count > 0,
648
+ "by_label": by_label,
649
+ "label_filter": label_name,
650
+ },
651
+ status=status.HTTP_200_OK,
652
+ )
653
+
654
+ elif request.method == "POST":
655
+ # Mark all segments as validated
656
+ label_name = request.data.get("label_name")
657
+ notes = request.data.get("notes", "")
658
+
659
+ segments_query = LabelVideoSegment.objects.filter(
660
+ video_file=video
661
+ ).select_related("state", "label")
662
+
663
+ if label_name:
664
+ segments_query = segments_query.filter(label__name=label_name)
665
+
666
+ segments = segments_query.all()
667
+
668
+ if not segments.exists():
669
+ return Response(
670
+ {
671
+ "message": "No segments found to validate",
672
+ "video_id": pk,
673
+ "updated_count": 0,
674
+ },
675
+ status=status.HTTP_200_OK,
676
+ )
677
+
678
+ updated_count = 0
679
+ failed_count = 0
680
+
681
+ with transaction.atomic():
682
+ for segment in segments:
683
+ try:
684
+ if segment.state:
685
+ segment.state.is_validated = True
686
+ segment.state.save()
687
+ updated_count += 1
688
+ else:
689
+ failed_count += 1
690
+ except Exception as e:
691
+ logger.error(f"Error validating segment {segment.id}: {e}")
692
+ failed_count += 1
693
+
694
+ logger.info(f"Completed validation for {updated_count} segments in video {pk}")
695
+ #logger.info("Removing Outside Segments")
696
+ # video.label_video_segments.filter(
697
+ # video_file=video, label__name="outside", state__is_validated=False
698
+ # ).delete()
699
+ return Response(
700
+ {
701
+ "message": f"Video segment validation completed for video {pk}",
702
+ "video_id": pk,
703
+ "total_segments": len(segments),
704
+ "updated_count": updated_count,
705
+ "failed_count": failed_count,
706
+ "label_filter": label_name,
707
+ },
708
+ status=status.HTTP_200_OK,
709
+ )