endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,415 @@
1
+ #!/usr/bin/env python3
2
+ """
3
+ Comprehensive video file validation script for debugging streaming issues.
4
+ Tests file integrity, codec compatibility, and streaming capabilities.
5
+ """
6
+
7
+ import os
8
+ import sys
9
+ import subprocess
10
+ from pathlib import Path
11
+ import json
12
+ import logging
13
+
14
+ # Dynamically determine the Django project path
15
+ # previously resolved to "/home/admin/test/lx-annotate/endoreg-db" (endoreg-db project directory)
16
+ project_path = os.environ.get(
17
+ "ENDOREG_DJANGO_PROJECT_PATH", str(Path(__file__).resolve().parent.parent.parent)
18
+ )
19
+ sys.path.insert(0, project_path)
20
+ os.environ.setdefault("DJANGO_SETTINGS_MODULE", "dev.dev_settings")
21
+
22
+
23
+ import django
24
+
25
+ django.setup()
26
+
27
+ from endoreg_db.models import VideoFile
28
+
29
+ logger = logging.getLogger(__name__)
30
+
31
+
32
+ def check_ffmpeg_available():
33
+ """Check if FFmpeg is available for video analysis."""
34
+ try:
35
+ result = subprocess.run(
36
+ ["ffmpeg", "-version"], capture_output=True, text=True, timeout=10
37
+ )
38
+ return result.returncode == 0
39
+ except (subprocess.TimeoutExpired, FileNotFoundError):
40
+ return False
41
+
42
+
43
+ def analyze_video_with_ffmpeg(video_path):
44
+ """
45
+ Use FFmpeg to analyze video file integrity and get detailed information.
46
+ """
47
+ analysis_result = {
48
+ "file_readable": False,
49
+ "has_video_stream": False,
50
+ "has_audio_stream": False,
51
+ "duration": None,
52
+ "codec": None,
53
+ "resolution": None,
54
+ "frame_count": None,
55
+ "errors": [],
56
+ "warnings": [],
57
+ }
58
+
59
+ try:
60
+ # First, try to probe the file
61
+ print(f"šŸ“Š Analyzing video with FFprobe: {video_path}")
62
+ probe_cmd = [
63
+ "ffprobe",
64
+ "-v",
65
+ "quiet",
66
+ "-print_format",
67
+ "json",
68
+ "-show_format",
69
+ "-show_streams",
70
+ str(video_path),
71
+ ]
72
+
73
+ result = subprocess.run(probe_cmd, capture_output=True, text=True, timeout=30)
74
+
75
+ if result.returncode == 0:
76
+ analysis_result["file_readable"] = True
77
+ probe_data = json.loads(result.stdout)
78
+
79
+ # Analyze streams
80
+ if "streams" in probe_data:
81
+ for stream in probe_data["streams"]:
82
+ if stream.get("codec_type") == "video":
83
+ analysis_result["has_video_stream"] = True
84
+ analysis_result["codec"] = stream.get("codec_name")
85
+ analysis_result["resolution"] = (
86
+ f"{stream.get('width', '?')}x{stream.get('height', '?')}"
87
+ )
88
+ analysis_result["frame_count"] = stream.get("nb_frames")
89
+ elif stream.get("codec_type") == "audio":
90
+ analysis_result["has_audio_stream"] = True
91
+
92
+ # Get format info
93
+ if "format" in probe_data:
94
+ analysis_result["duration"] = float(
95
+ probe_data["format"].get("duration", 0)
96
+ )
97
+ else:
98
+ analysis_result["errors"].append(f"FFprobe failed: {result.stderr}")
99
+
100
+ except subprocess.TimeoutExpired:
101
+ analysis_result["errors"].append(
102
+ "FFprobe timed out - file might be severely corrupted"
103
+ )
104
+ except json.JSONDecodeError:
105
+ analysis_result["errors"].append("FFprobe returned invalid JSON")
106
+ except Exception as e:
107
+ analysis_result["errors"].append(f"FFprobe analysis failed: {e}")
108
+
109
+ # Try to validate file integrity
110
+ try:
111
+ print("šŸ” Testing video integrity...")
112
+ integrity_cmd = [
113
+ "ffmpeg",
114
+ "-v",
115
+ "error",
116
+ "-i",
117
+ str(video_path),
118
+ "-f",
119
+ "null",
120
+ "-",
121
+ "-t",
122
+ "5", # Test first 5 seconds
123
+ ]
124
+
125
+ result = subprocess.run(
126
+ integrity_cmd, capture_output=True, text=True, timeout=30
127
+ )
128
+
129
+ if result.returncode == 0:
130
+ print("āœ… Video integrity test passed")
131
+ else:
132
+ analysis_result["errors"].append(f"Integrity test failed: {result.stderr}")
133
+
134
+ except subprocess.TimeoutExpired:
135
+ analysis_result["errors"].append("Integrity test timed out")
136
+ except Exception as e:
137
+ analysis_result["errors"].append(f"Integrity test failed: {e}")
138
+
139
+ return analysis_result
140
+
141
+
142
+ def test_video_streaming_compatibility(video_path):
143
+ """
144
+ Test if video is compatible with web streaming (H.264 baseline profile recommended).
145
+ """
146
+ compatibility_result = {
147
+ "web_compatible": False,
148
+ "streaming_friendly": False,
149
+ "needs_conversion": False,
150
+ "recommendations": [],
151
+ }
152
+
153
+ try:
154
+ # Check codec and profile
155
+ cmd = [
156
+ "ffprobe",
157
+ "-v",
158
+ "quiet",
159
+ "-select_streams",
160
+ "v:0",
161
+ "-show_entries",
162
+ "stream=codec_name,profile,level,pix_fmt",
163
+ "-of",
164
+ "csv=p=0",
165
+ str(video_path),
166
+ ]
167
+
168
+ result = subprocess.run(cmd, capture_output=True, text=True, timeout=15)
169
+
170
+ if result.returncode == 0:
171
+ codec_info = result.stdout.strip().split(",")
172
+ if len(codec_info) >= 1:
173
+ codec = codec_info[0]
174
+
175
+ if codec == "h264":
176
+ compatibility_result["web_compatible"] = True
177
+
178
+ # Check if moov atom is at the beginning (for streaming)
179
+ moov_cmd = [
180
+ "ffprobe",
181
+ "-v",
182
+ "quiet",
183
+ "-show_entries",
184
+ "format",
185
+ "-of",
186
+ "csv=p=0",
187
+ str(video_path),
188
+ ]
189
+ moov_result = subprocess.run(
190
+ moov_cmd, capture_output=True, text=True, timeout=10
191
+ )
192
+
193
+ if "mov,mp4" in moov_result.stdout:
194
+ compatibility_result["streaming_friendly"] = True
195
+ else:
196
+ compatibility_result["recommendations"].append(
197
+ "Consider re-encoding with 'faststart' flag for better streaming"
198
+ )
199
+
200
+ elif codec in ["hevc", "h265"]:
201
+ compatibility_result["recommendations"].append(
202
+ "HEVC/H.265 codec may not be supported in all browsers"
203
+ )
204
+ compatibility_result["needs_conversion"] = True
205
+ else:
206
+ compatibility_result["recommendations"].append(
207
+ f"Codec '{codec}' may not be web-compatible. Consider H.264"
208
+ )
209
+ compatibility_result["needs_conversion"] = True
210
+
211
+ except Exception as e:
212
+ compatibility_result["recommendations"].append(
213
+ f"Could not analyze compatibility: {e}"
214
+ )
215
+
216
+ return compatibility_result
217
+
218
+
219
+ def test_django_video_access(video_id):
220
+ """
221
+ Test accessing the video through Django ORM and methods.
222
+ """
223
+ access_result = {
224
+ "orm_accessible": False,
225
+ "has_raw_file": False,
226
+ "has_processed_file": False,
227
+ "active_file_path": None,
228
+ "file_size": 0,
229
+ "errors": [],
230
+ }
231
+
232
+ try:
233
+ video = VideoFile.objects.get(pk=video_id)
234
+ access_result["orm_accessible"] = True
235
+
236
+ # Check raw file
237
+ if hasattr(video, "raw_file") and video.raw_file:
238
+ try:
239
+ raw_path = video.raw_file.path
240
+ if Path(raw_path).exists():
241
+ access_result["has_raw_file"] = True
242
+ access_result["active_file_path"] = raw_path
243
+ access_result["file_size"] = Path(raw_path).stat().st_size
244
+ except Exception as e:
245
+ access_result["errors"].append(f"Raw file access error: {e}")
246
+
247
+ # Check processed file
248
+ if hasattr(video, "processed_file") and video.processed_file:
249
+ try:
250
+ processed_path = video.processed_file.path
251
+ if Path(processed_path).exists():
252
+ access_result["has_processed_file"] = True
253
+ if not access_result["active_file_path"]:
254
+ access_result["active_file_path"] = processed_path
255
+ access_result["file_size"] = Path(processed_path).stat().st_size
256
+ except Exception as e:
257
+ access_result["errors"].append(f"Processed file access error: {e}")
258
+
259
+ # Test video streaming methods
260
+ try:
261
+ if hasattr(video, "get_active_file_path"):
262
+ active_path = video.get_active_file_path()
263
+ if active_path and Path(active_path).exists():
264
+ access_result["active_file_path"] = str(active_path)
265
+ access_result["file_size"] = Path(active_path).stat().st_size
266
+ except Exception as e:
267
+ access_result["errors"].append(f"Active file path method error: {e}")
268
+
269
+ except VideoFile.DoesNotExist:
270
+ access_result["errors"].append(
271
+ f"Video with ID {video_id} not found in database"
272
+ )
273
+ except Exception as e:
274
+ access_result["errors"].append(f"Django access error: {e}")
275
+
276
+ return access_result
277
+
278
+
279
+ def main():
280
+ import argparse
281
+
282
+ parser = argparse.ArgumentParser(
283
+ description="Comprehensive video file validation script for debugging streaming issues."
284
+ )
285
+ parser.add_argument(
286
+ "video_id",
287
+ nargs="?",
288
+ type=int,
289
+ default=5,
290
+ help="ID of the video to validate (default: 5)",
291
+ )
292
+ args = parser.parse_args()
293
+
294
+ video_id = args.video_id
295
+
296
+ print("šŸŽ¬ COMPREHENSIVE VIDEO VALIDATION")
297
+ print("=" * 50)
298
+ print(f"Testing video ID: {video_id}")
299
+ print()
300
+
301
+ # Test Django access
302
+ print("1ļøāƒ£ Testing Django ORM Access...")
303
+ django_result = test_django_video_access(video_id)
304
+
305
+ if django_result["orm_accessible"]:
306
+ print("āœ… Video found in database")
307
+ print(f"šŸ“ Active file path: {django_result['active_file_path']}")
308
+ print(f"šŸ“ File size: {django_result['file_size'] / (1024 * 1024):.1f} MB")
309
+
310
+ if django_result["errors"]:
311
+ for error in django_result["errors"]:
312
+ print(f"āš ļø {error}")
313
+ else:
314
+ print("āŒ Video not accessible through Django")
315
+ for error in django_result["errors"]:
316
+ print(f"āŒ {error}")
317
+ return
318
+
319
+ # Get video file path for further testing
320
+ video_path = django_result["active_file_path"]
321
+ if not video_path or not Path(video_path).exists():
322
+ print("āŒ No valid video file path found")
323
+ return
324
+
325
+ print("\n2ļøāƒ£ Testing File System Access...")
326
+ file_path = Path(video_path)
327
+ print(f"šŸ“ Path: {file_path}")
328
+ print(f"āœ… File exists: {file_path.exists()}")
329
+ print(f"šŸ“ Size: {file_path.stat().st_size / (1024 * 1024):.1f} MB")
330
+ print(f"šŸ”‘ Readable: {os.access(file_path, os.R_OK)}")
331
+
332
+ # Check FFmpeg availability
333
+ print("\n3ļøāƒ£ Checking FFmpeg Availability...")
334
+ if not check_ffmpeg_available():
335
+ print("āŒ FFmpeg not available - cannot perform detailed video analysis")
336
+ print("šŸ’” Install FFmpeg: sudo apt-get install ffmpeg")
337
+ return
338
+ else:
339
+ print("āœ… FFmpeg is available")
340
+
341
+ # Analyze video with FFmpeg
342
+ print("\n4ļøāƒ£ Video Analysis with FFmpeg...")
343
+ analysis = analyze_video_with_ffmpeg(video_path)
344
+
345
+ if analysis["file_readable"]:
346
+ print("āœ… File is readable by FFmpeg")
347
+ print(f"šŸŽ„ Has video stream: {analysis['has_video_stream']}")
348
+ print(f"šŸ”Š Has audio stream: {analysis['has_audio_stream']}")
349
+ print(
350
+ f"ā±ļø Duration: {analysis['duration']:.2f}s"
351
+ if analysis["duration"]
352
+ else "ā±ļø Duration: Unknown"
353
+ )
354
+ print(f"šŸŽ¬ Codec: {analysis['codec'] or 'Unknown'}")
355
+ print(f"šŸ“ Resolution: {analysis['resolution'] or 'Unknown'}")
356
+ print(f"šŸ–¼ļø Frame count: {analysis['frame_count'] or 'Unknown'}")
357
+ else:
358
+ print("āŒ File is NOT readable by FFmpeg")
359
+
360
+ if analysis["errors"]:
361
+ print("\nāŒ Errors found:")
362
+ for error in analysis["errors"]:
363
+ print(f" • {error}")
364
+
365
+ if analysis["warnings"]:
366
+ print("\nāš ļø Warnings:")
367
+ for warning in analysis["warnings"]:
368
+ print(f" • {warning}")
369
+
370
+ # Test streaming compatibility
371
+ print("\n5ļøāƒ£ Testing Web Streaming Compatibility...")
372
+ compatibility = test_video_streaming_compatibility(video_path)
373
+
374
+ print(f"🌐 Web compatible: {compatibility['web_compatible']}")
375
+ print(f"šŸ“” Streaming friendly: {compatibility['streaming_friendly']}")
376
+ print(f"šŸ”„ Needs conversion: {compatibility['needs_conversion']}")
377
+
378
+ if compatibility["recommendations"]:
379
+ print("\nšŸ’” Recommendations:")
380
+ for rec in compatibility["recommendations"]:
381
+ print(f" • {rec}")
382
+
383
+ # Final diagnosis
384
+ print("\n6ļøāƒ£ DIAGNOSIS")
385
+ print("=" * 30)
386
+
387
+ if not analysis["file_readable"]:
388
+ print("šŸ”“ CRITICAL: Video file is corrupted or unreadable")
389
+ print("šŸ“‹ Action: Replace or re-encode the video file")
390
+ elif not analysis["has_video_stream"]:
391
+ print("šŸ”“ CRITICAL: No video stream found")
392
+ print("šŸ“‹ Action: Check if file is actually a video")
393
+ elif not compatibility["web_compatible"]:
394
+ print("🟔 WARNING: Video may not be web-compatible")
395
+ print("šŸ“‹ Action: Consider re-encoding to H.264")
396
+ elif not compatibility["streaming_friendly"]:
397
+ print("🟔 WARNING: Video not optimized for streaming")
398
+ print("šŸ“‹ Action: Re-encode with faststart flag")
399
+ else:
400
+ print("🟢 GOOD: Video appears to be valid and web-compatible")
401
+ print("šŸ“‹ Issue likely in Django streaming view or network connection")
402
+
403
+ print("\nšŸ”§ Suggested fixes for streaming issues:")
404
+ print("1. Check Django VideoStreamView implementation")
405
+ print("2. Verify file permissions (readable by web server)")
406
+ print("3. Test with a different video file")
407
+ print("4. Check browser developer tools for specific errors")
408
+ print("5. Consider re-encoding the video:")
409
+ print(
410
+ f" ffmpeg -i '{video_path}' -c:v libx264 -profile:v baseline -level 3.0 -movflags faststart output.mp4"
411
+ )
412
+
413
+
414
+ if __name__ == "__main__":
415
+ main()
@@ -0,0 +1,30 @@
1
+ from .video_splitter import split_video
2
+ from .names import (
3
+ get_video_key,
4
+ identify_video_key,
5
+ get_video_key_regex_by_examination_alias,
6
+ )
7
+
8
+ # Add necessary functions from ffmpeg_wrapper
9
+ from .ffmpeg_wrapper import (
10
+ get_stream_info,
11
+ assemble_video_from_frames,
12
+ transcode_video,
13
+ transcode_videofile_if_required,
14
+ extract_frames as ffmpeg_extract_frames, # Alias to avoid potential name clash if 'extract_frames' was used elsewhere directly from __init__
15
+ )
16
+
17
+
18
+ __all__ = [
19
+ # Keep existing
20
+ "split_video",
21
+ "get_video_key",
22
+ "identify_video_key",
23
+ "get_video_key_regex_by_examination_alias",
24
+ # Add from ffmpeg_wrapper
25
+ "get_stream_info",
26
+ "assemble_video_from_frames",
27
+ "transcode_video",
28
+ "transcode_videofile_if_required",
29
+ "ffmpeg_extract_frames", # Use the alias if needed
30
+ ]
@@ -0,0 +1,100 @@
1
+ import os
2
+ from pathlib import Path
3
+ from typing import TYPE_CHECKING, List, Optional
4
+
5
+ from django.db import transaction
6
+ from icecream import ic
7
+ from tqdm import tqdm
8
+
9
+ if TYPE_CHECKING:
10
+ from ...models.media import VideoFile
11
+
12
+ import io
13
+
14
+ from django.core.files import File
15
+
16
+ from .ffmpeg_wrapper import extract_frames as ffmpeg_extract_frames
17
+
18
+
19
+ def prepare_bulk_frames(frame_paths: List[Path]):
20
+ """
21
+ Reads the frame paths into memory as Django File objects.
22
+ This avoids 'seek of closed file' errors by using BytesIO for each frame.
23
+ """
24
+ for path in frame_paths:
25
+ frame_number = int(path.stem.split("_")[1])
26
+ with open(path, "rb") as f:
27
+ content = f.read()
28
+ file_obj = File(io.BytesIO(content), name=path.name)
29
+ yield frame_number, file_obj
30
+
31
+
32
+ def extract_frames(
33
+ video_path: Path,
34
+ output_dir: Path,
35
+ quality: int,
36
+ ext: str = "jpg",
37
+ fps: Optional[float] = None,
38
+ ) -> List[Path]:
39
+ """Extracts frames from a video file using ffmpeg_wrapper."""
40
+ # Ensure output directory exists
41
+ output_dir.mkdir(parents=True, exist_ok=True)
42
+ return ffmpeg_extract_frames(video_path, output_dir, quality, ext, fps)
43
+
44
+
45
+ def initialize_frame_objects(video: "VideoFile", extracted_paths: List[Path]):
46
+ """
47
+ Initialize frame objects for the extracted frames and update state.
48
+ """
49
+ state = video.get_or_create_state()
50
+ # Check state before proceeding
51
+ if state.frames_initialized:
52
+ ic(f"Frames already initialized for video {video.video_hash}, skipping.")
53
+ return
54
+
55
+ if not extracted_paths:
56
+ ic(
57
+ f"No extracted paths provided for video {video.video_hash}, cannot initialize frames."
58
+ )
59
+ return
60
+
61
+ video.frame_count = len(extracted_paths)
62
+ frames_to_create = []
63
+ batch_size = int(os.environ.get("DJANGO_FFMPEG_EXTRACT_FRAME_BATCHSIZE", "500"))
64
+
65
+ # Prepare frame data (relative paths for storage)
66
+ frame_dir = video.get_frame_dir_path()
67
+ if not frame_dir:
68
+ raise ValueError(f"Frame directory not set for video {video.video_hash}")
69
+
70
+ storage_base_path = Path(
71
+ video._meta.get_field("raw_file").storage.location
72
+ ) # Get storage root
73
+
74
+ for i, path in tqdm(enumerate(extracted_paths, start=1)):
75
+ frame_number = (
76
+ int(path.stem.split("_")[1]) - 1
77
+ ) # Assuming frame_0000001.jpg is frame_number 0
78
+ relative_path = path.relative_to(
79
+ storage_base_path
80
+ ).as_posix() # Path relative to MEDIA_ROOT
81
+
82
+ # Create Frame instance (without saving yet)
83
+ frame_obj_instance = video.create_frame_object(
84
+ frame_number, image_file=relative_path, extracted=True
85
+ )
86
+ frames_to_create.append(frame_obj_instance)
87
+
88
+ if i % batch_size == 0:
89
+ with transaction.atomic():
90
+ video.bulk_create_frames(frames_to_create)
91
+ frames_to_create.clear()
92
+
93
+ if frames_to_create:
94
+ with transaction.atomic():
95
+ video.bulk_create_frames(frames_to_create)
96
+
97
+ # Update state and save VideoFile (to save frame_count)
98
+ state.frames_initialized = True
99
+ state.save(update_fields=["frames_initialized"])
100
+ video.save(update_fields=["frame_count"]) # Save frame_count on VideoFile