endoreg-db 0.8.9.32__py3-none-any.whl
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- endoreg_db/__init__.py +0 -0
- endoreg_db/_version.py +34 -0
- endoreg_db/admin.py +97 -0
- endoreg_db/api/serializers/finding_descriptions.py +0 -0
- endoreg_db/api/views/finding_descriptions.py +0 -0
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +17 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/authz/auth.py +78 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +20 -0
- endoreg_db/authz/middleware.py +84 -0
- endoreg_db/authz/permissions.py +138 -0
- endoreg_db/authz/policy.py +224 -0
- endoreg_db/authz/settings.py +64 -0
- endoreg_db/authz/views_auth.py +70 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +99 -0
- endoreg_db/config/__init__.py +0 -0
- endoreg_db/config/env.py +106 -0
- endoreg_db/config/settings/__init__.py +6 -0
- endoreg_db/config/settings/base.py +148 -0
- endoreg_db/config/settings/case_gen.py +32 -0
- endoreg_db/config/settings/dev.py +108 -0
- endoreg_db/config/settings/keycloak.py +177 -0
- endoreg_db/config/settings/prod.py +66 -0
- endoreg_db/config/settings/test.py +72 -0
- endoreg_db/data/__init__.py +135 -0
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/ai_model_label/label/data.yaml +88 -0
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_type/data.yaml +7 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
- endoreg_db/data/case_template/rule_value/.init +0 -0
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
- endoreg_db/data/case_template/template/base.yaml +8 -0
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
- endoreg_db/data/case_template/tmp/_rule_value +13 -0
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
- endoreg_db/data/center/data.yaml +99 -0
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/cardiovascular.yaml +37 -0
- endoreg_db/data/disease/hepatology.yaml +5 -0
- endoreg_db/data/disease/misc.yaml +5 -0
- endoreg_db/data/disease/renal.yaml +5 -0
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
- endoreg_db/data/distribution/date/patient.yaml +7 -0
- endoreg_db/data/distribution/multiple_categorical/.init +0 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscope_type/data.yaml +11 -0
- endoreg_db/data/endoscopy_processor/data.yaml +50 -0
- endoreg_db/data/event/cardiology.yaml +15 -0
- endoreg_db/data/event/neurology.yaml +14 -0
- endoreg_db/data/event/surgery.yaml +13 -0
- endoreg_db/data/event/thrombembolism.yaml +20 -0
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/examination/examinations/data.yaml +172 -0
- endoreg_db/data/examination/time/data.yaml +48 -0
- endoreg_db/data/examination/time-type/data.yaml +5 -0
- endoreg_db/data/examination/type/data.yaml +17 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/00_generic.yaml +35 -0
- endoreg_db/data/finding/00_generic_complication.yaml +9 -0
- endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
- endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
- endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
- endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
- endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
- endoreg_db/data/finding_classification/00_generic.yaml +44 -0
- endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
- endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
- endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
- endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
- endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
- endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
- endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
- endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
- endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
- endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
- endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
- endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
- endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
- endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_type/data.yaml +39 -0
- endoreg_db/data/gender/data.yaml +42 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/data.yaml +30 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/medication.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
- endoreg_db/data/lab_value/coagulation.yaml +54 -0
- endoreg_db/data/lab_value/electrolytes.yaml +228 -0
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
- endoreg_db/data/lab_value/hematology.yaml +184 -0
- endoreg_db/data/lab_value/hormones.yaml +59 -0
- endoreg_db/data/lab_value/lipids.yaml +53 -0
- endoreg_db/data/lab_value/misc.yaml +76 -0
- endoreg_db/data/lab_value/renal_function.yaml +12 -0
- endoreg_db/data/log_type/data.yaml +57 -0
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/material/material.yaml +91 -0
- endoreg_db/data/medication/anticoagulation.yaml +65 -0
- endoreg_db/data/medication/tah.yaml +70 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
- endoreg_db/data/medication_indication_type/data.yaml +11 -0
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
- endoreg_db/data/medication_intake_time/base.yaml +31 -0
- endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
- endoreg_db/data/medication_schedule/ass.yaml +12 -0
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +59 -0
- endoreg_db/data/network_device_type/data.yaml +12 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
- endoreg_db/data/pdf_type/data.yaml +46 -0
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
- endoreg_db/data/profession/data.yaml +70 -0
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
- endoreg_db/data/requirement/01_patient_data.yaml +93 -0
- endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/old/gender.yaml +0 -0
- endoreg_db/data/requirement/old/lab_value.yaml +441 -0
- endoreg_db/data/requirement/old/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
- endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
- endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set_type/data.yaml +41 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift/m2.yaml +0 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
- endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
- endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
- endoreg_db/data/unit/concentration.yaml +115 -0
- endoreg_db/data/unit/data.yaml +17 -0
- endoreg_db/data/unit/length.yaml +31 -0
- endoreg_db/data/unit/misc.yaml +20 -0
- endoreg_db/data/unit/rate.yaml +6 -0
- endoreg_db/data/unit/time.yaml +48 -0
- endoreg_db/data/unit/volume.yaml +35 -0
- endoreg_db/data/unit/weight.yaml +38 -0
- endoreg_db/data/waste/data.yaml +12 -0
- endoreg_db/exceptions.py +24 -0
- endoreg_db/export/frames/export.py +6 -0
- endoreg_db/export/frames/export_frames_with_labels.py +616 -0
- endoreg_db/factories/__init__.py +0 -0
- endoreg_db/forms/__init__.py +4 -0
- endoreg_db/forms/examination_form.py +12 -0
- endoreg_db/forms/patient_finding_intervention_form.py +40 -0
- endoreg_db/forms/patient_form.py +23 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -0
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
- endoreg_db/forms/settings/__init__.py +11 -0
- endoreg_db/forms/unit.py +7 -0
- endoreg_db/helpers/__init__.py +0 -0
- endoreg_db/helpers/count_db.py +48 -0
- endoreg_db/helpers/data_loader.py +280 -0
- endoreg_db/helpers/default_objects.py +414 -0
- endoreg_db/helpers/download_segmentation_model.py +32 -0
- endoreg_db/helpers/interact.py +1 -0
- endoreg_db/helpers/test_video_helper.py +127 -0
- endoreg_db/import_files/__init__.py +27 -0
- endoreg_db/import_files/context/__init__.py +7 -0
- endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
- endoreg_db/import_files/context/ensure_center.py +17 -0
- endoreg_db/import_files/context/file_lock.py +66 -0
- endoreg_db/import_files/context/import_context.py +42 -0
- endoreg_db/import_files/context/validate_directories.py +57 -0
- endoreg_db/import_files/file_storage/__init__.py +15 -0
- endoreg_db/import_files/file_storage/create_report_file.py +99 -0
- endoreg_db/import_files/file_storage/create_video_file.py +104 -0
- endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
- endoreg_db/import_files/file_storage/state_management.py +463 -0
- endoreg_db/import_files/file_storage/storage.py +42 -0
- endoreg_db/import_files/import_service.md +26 -0
- endoreg_db/import_files/processing/__init__.py +11 -0
- endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
- endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
- endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
- endoreg_db/import_files/pseudonymization/__init__.py +0 -0
- endoreg_db/import_files/pseudonymization/fake.py +52 -0
- endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
- endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
- endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
- endoreg_db/import_files/report_import_service.py +147 -0
- endoreg_db/import_files/video_import_service.py +154 -0
- endoreg_db/logger_conf.py +156 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +132 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
- endoreg_db/management/commands/export_frame_annot.py +196 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
- endoreg_db/management/commands/fix_video_paths.py +186 -0
- endoreg_db/management/commands/import_report.py +361 -0
- endoreg_db/management/commands/list_routes.py +20 -0
- endoreg_db/management/commands/load_ai_model_data.py +83 -0
- endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
- endoreg_db/management/commands/load_base_db_data.py +63 -0
- endoreg_db/management/commands/load_center_data.py +68 -0
- endoreg_db/management/commands/load_contraindication_data.py +39 -0
- endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
- endoreg_db/management/commands/load_disease_classification_data.py +38 -0
- endoreg_db/management/commands/load_disease_data.py +59 -0
- endoreg_db/management/commands/load_distribution_data.py +63 -0
- endoreg_db/management/commands/load_endoscope_data.py +58 -0
- endoreg_db/management/commands/load_event_data.py +39 -0
- endoreg_db/management/commands/load_examination_data.py +78 -0
- endoreg_db/management/commands/load_examination_indication_data.py +85 -0
- endoreg_db/management/commands/load_finding_data.py +115 -0
- endoreg_db/management/commands/load_gender_data.py +37 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +142 -0
- endoreg_db/management/commands/load_information_source.py +46 -0
- endoreg_db/management/commands/load_lab_value_data.py +52 -0
- endoreg_db/management/commands/load_legacy_data.py +303 -0
- endoreg_db/management/commands/load_medication_data.py +104 -0
- endoreg_db/management/commands/load_name_data.py +36 -0
- endoreg_db/management/commands/load_organ_data.py +39 -0
- endoreg_db/management/commands/load_pdf_type_data.py +58 -0
- endoreg_db/management/commands/load_profession_data.py +40 -0
- endoreg_db/management/commands/load_qualification_data.py +56 -0
- endoreg_db/management/commands/load_report_reader_flag_data.py +40 -0
- endoreg_db/management/commands/load_requirement_data.py +207 -0
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/load_risk_data.py +57 -0
- endoreg_db/management/commands/load_shift_data.py +57 -0
- endoreg_db/management/commands/load_tag_data.py +54 -0
- endoreg_db/management/commands/load_unit_data.py +40 -0
- endoreg_db/management/commands/load_user_groups.py +26 -0
- endoreg_db/management/commands/model_input.py +169 -0
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- endoreg_db/utils/check_video_files.py +175 -0
- endoreg_db/utils/cropping.py +30 -0
- endoreg_db/utils/dataloader.py +285 -0
- endoreg_db/utils/dates.py +59 -0
- endoreg_db/utils/defaults/set_default_center.py +33 -0
- endoreg_db/utils/env.py +37 -0
- endoreg_db/utils/extract_specific_frames.py +87 -0
- endoreg_db/utils/file_operations.py +70 -0
- endoreg_db/utils/fix_video_path_direct.py +157 -0
- endoreg_db/utils/frame_anonymization_utils.py +463 -0
- endoreg_db/utils/hashs.py +138 -0
- endoreg_db/utils/links/__init__.py +0 -0
- endoreg_db/utils/links/requirement_link.py +237 -0
- endoreg_db/utils/mime_types.py +0 -0
- endoreg_db/utils/names.py +82 -0
- endoreg_db/utils/ocr.py +195 -0
- endoreg_db/utils/operation_log.py +87 -0
- endoreg_db/utils/parse_and_generate_yaml.py +45 -0
- endoreg_db/utils/paths.py +159 -0
- endoreg_db/utils/permissions.py +160 -0
- endoreg_db/utils/pipelines/Readme.md +235 -0
- endoreg_db/utils/pipelines/__init__.py +0 -0
- endoreg_db/utils/pipelines/process_video_dir.py +144 -0
- endoreg_db/utils/product/__init__.py +0 -0
- endoreg_db/utils/product/sum_emissions.py +22 -0
- endoreg_db/utils/product/sum_weights.py +20 -0
- endoreg_db/utils/pydantic_models/__init__.py +5 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/requirement_helpers.py +0 -0
- endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
- endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
- endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
- endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
- endoreg_db/utils/setup_config.py +196 -0
- endoreg_db/utils/storage.py +117 -0
- endoreg_db/utils/translation.py +31 -0
- endoreg_db/utils/uuid.py +5 -0
- endoreg_db/utils/validate_endo_roi.py +33 -0
- endoreg_db/utils/validate_subcategory_dict.py +93 -0
- endoreg_db/utils/validate_video_detailed.py +415 -0
- endoreg_db/utils/video/__init__.py +30 -0
- endoreg_db/utils/video/extract_frames.py +100 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
- endoreg_db/utils/video/names.py +47 -0
- endoreg_db/utils/video/streaming_processor.py +386 -0
- endoreg_db/utils/video/video_splitter.py +105 -0
- endoreg_db/versioning.md +79 -0
- endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
- endoreg_db/views/__init__.py +157 -0
- endoreg_db/views/anonymization/__init__.py +31 -0
- endoreg_db/views/anonymization/media_management.py +486 -0
- endoreg_db/views/anonymization/overview.py +307 -0
- endoreg_db/views/anonymization/validate.py +310 -0
- endoreg_db/views/auth/__init__.py +13 -0
- endoreg_db/views/auth/keycloak.py +146 -0
- endoreg_db/views/examination/__init__.py +30 -0
- endoreg_db/views/examination/examination.py +37 -0
- endoreg_db/views/examination/examination_manifest_cache.py +26 -0
- endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
- endoreg_db/views/examination/get_finding_classifications.py +38 -0
- endoreg_db/views/examination/get_findings.py +39 -0
- endoreg_db/views/examination/get_instruments.py +19 -0
- endoreg_db/views/examination/get_interventions.py +14 -0
- endoreg_db/views/finding/__init__.py +9 -0
- endoreg_db/views/finding/finding.py +116 -0
- endoreg_db/views/finding/get_classifications.py +14 -0
- endoreg_db/views/finding/get_interventions.py +17 -0
- endoreg_db/views/finding_classification/__init__.py +13 -0
- endoreg_db/views/finding_classification/base.py +0 -0
- endoreg_db/views/finding_classification/finding_classification.py +41 -0
- endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
- endoreg_db/views/media/__init__.py +32 -0
- endoreg_db/views/media/pdf_media.py +411 -0
- endoreg_db/views/media/sensitive_metadata.py +372 -0
- endoreg_db/views/media/video_media.py +275 -0
- endoreg_db/views/meta/__init__.py +7 -0
- endoreg_db/views/meta/sensitive_meta_list.py +102 -0
- endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
- endoreg_db/views/misc/__init__.py +29 -0
- endoreg_db/views/misc/center.py +14 -0
- endoreg_db/views/misc/csrf.py +8 -0
- endoreg_db/views/misc/gender.py +15 -0
- endoreg_db/views/misc/stats.py +255 -0
- endoreg_db/views/misc/upload_views.py +241 -0
- endoreg_db/views/patient/__init__.py +3 -0
- endoreg_db/views/patient/patient.py +253 -0
- endoreg_db/views/patient_examination/__init__.py +11 -0
- endoreg_db/views/patient_examination/patient_examination.py +141 -0
- endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
- endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
- endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
- endoreg_db/views/patient_examination/video.py +228 -0
- endoreg_db/views/patient_finding/__init__.py +7 -0
- endoreg_db/views/patient_finding/base.py +0 -0
- endoreg_db/views/patient_finding/patient_finding.py +71 -0
- endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
- endoreg_db/views/patient_finding_classification/__init__.py +5 -0
- endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
- endoreg_db/views/report/__init__.py +7 -0
- endoreg_db/views/report/reimport.py +177 -0
- endoreg_db/views/report/report_stream.py +191 -0
- endoreg_db/views/requirement/__init__.py +11 -0
- endoreg_db/views/requirement/evaluate.py +278 -0
- endoreg_db/views/requirement/lookup.py +380 -0
- endoreg_db/views/requirement/lookup_store.py +183 -0
- endoreg_db/views/requirement/requirement_utils.py +87 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +266 -0
- endoreg_db/views/video/__init__.py +49 -0
- endoreg_db/views/video/ai/__init__.py +8 -0
- endoreg_db/views/video/ai/label.py +159 -0
- endoreg_db/views/video/correction.py +529 -0
- endoreg_db/views/video/reimport.py +230 -0
- endoreg_db/views/video/segments_crud.py +709 -0
- endoreg_db/views/video/video_apply_mask.py +49 -0
- endoreg_db/views/video/video_correction.py +22 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_metadata.py +101 -0
- endoreg_db/views/video/video_processing_history.py +25 -0
- endoreg_db/views/video/video_remove_frames.py +49 -0
- endoreg_db/views/video/video_stream.py +334 -0
- endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
- endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
- endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
- endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
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#!/usr/bin/env python3
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"""
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Comprehensive video file validation script for debugging streaming issues.
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Tests file integrity, codec compatibility, and streaming capabilities.
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"""
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import os
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import sys
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import subprocess
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from pathlib import Path
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import json
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import logging
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# Dynamically determine the Django project path
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# previously resolved to "/home/admin/test/lx-annotate/endoreg-db" (endoreg-db project directory)
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project_path = os.environ.get(
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"ENDOREG_DJANGO_PROJECT_PATH", str(Path(__file__).resolve().parent.parent.parent)
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)
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sys.path.insert(0, project_path)
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os.environ.setdefault("DJANGO_SETTINGS_MODULE", "dev.dev_settings")
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import django
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django.setup()
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from endoreg_db.models import VideoFile
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logger = logging.getLogger(__name__)
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def check_ffmpeg_available():
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"""Check if FFmpeg is available for video analysis."""
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try:
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result = subprocess.run(
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["ffmpeg", "-version"], capture_output=True, text=True, timeout=10
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)
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return result.returncode == 0
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except (subprocess.TimeoutExpired, FileNotFoundError):
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return False
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def analyze_video_with_ffmpeg(video_path):
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"""
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Use FFmpeg to analyze video file integrity and get detailed information.
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"""
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analysis_result = {
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"file_readable": False,
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"has_video_stream": False,
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"has_audio_stream": False,
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"duration": None,
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"codec": None,
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"resolution": None,
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"frame_count": None,
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"errors": [],
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"warnings": [],
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}
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try:
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# First, try to probe the file
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print(f"š Analyzing video with FFprobe: {video_path}")
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probe_cmd = [
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"ffprobe",
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"-v",
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"quiet",
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"-print_format",
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"json",
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"-show_format",
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"-show_streams",
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str(video_path),
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]
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result = subprocess.run(probe_cmd, capture_output=True, text=True, timeout=30)
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if result.returncode == 0:
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analysis_result["file_readable"] = True
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probe_data = json.loads(result.stdout)
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# Analyze streams
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if "streams" in probe_data:
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for stream in probe_data["streams"]:
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if stream.get("codec_type") == "video":
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analysis_result["has_video_stream"] = True
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analysis_result["codec"] = stream.get("codec_name")
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analysis_result["resolution"] = (
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f"{stream.get('width', '?')}x{stream.get('height', '?')}"
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)
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analysis_result["frame_count"] = stream.get("nb_frames")
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elif stream.get("codec_type") == "audio":
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analysis_result["has_audio_stream"] = True
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# Get format info
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if "format" in probe_data:
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analysis_result["duration"] = float(
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probe_data["format"].get("duration", 0)
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)
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else:
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analysis_result["errors"].append(f"FFprobe failed: {result.stderr}")
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except subprocess.TimeoutExpired:
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analysis_result["errors"].append(
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"FFprobe timed out - file might be severely corrupted"
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)
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except json.JSONDecodeError:
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analysis_result["errors"].append("FFprobe returned invalid JSON")
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except Exception as e:
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analysis_result["errors"].append(f"FFprobe analysis failed: {e}")
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# Try to validate file integrity
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try:
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print("š Testing video integrity...")
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integrity_cmd = [
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"ffmpeg",
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"-v",
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"error",
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"-i",
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str(video_path),
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"-f",
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"null",
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"-",
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"-t",
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"5", # Test first 5 seconds
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]
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result = subprocess.run(
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integrity_cmd, capture_output=True, text=True, timeout=30
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)
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if result.returncode == 0:
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print("ā
Video integrity test passed")
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else:
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analysis_result["errors"].append(f"Integrity test failed: {result.stderr}")
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except subprocess.TimeoutExpired:
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analysis_result["errors"].append("Integrity test timed out")
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except Exception as e:
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analysis_result["errors"].append(f"Integrity test failed: {e}")
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return analysis_result
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def test_video_streaming_compatibility(video_path):
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"""
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Test if video is compatible with web streaming (H.264 baseline profile recommended).
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"""
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compatibility_result = {
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"web_compatible": False,
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"streaming_friendly": False,
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"needs_conversion": False,
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"recommendations": [],
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}
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try:
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# Check codec and profile
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cmd = [
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"ffprobe",
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"-v",
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"quiet",
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"-select_streams",
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"v:0",
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"-show_entries",
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"stream=codec_name,profile,level,pix_fmt",
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"-of",
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"csv=p=0",
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str(video_path),
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]
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result = subprocess.run(cmd, capture_output=True, text=True, timeout=15)
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if result.returncode == 0:
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codec_info = result.stdout.strip().split(",")
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if len(codec_info) >= 1:
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codec = codec_info[0]
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if codec == "h264":
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compatibility_result["web_compatible"] = True
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# Check if moov atom is at the beginning (for streaming)
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moov_cmd = [
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"ffprobe",
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"-v",
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"quiet",
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"-show_entries",
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"format",
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"-of",
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"csv=p=0",
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str(video_path),
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]
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moov_result = subprocess.run(
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moov_cmd, capture_output=True, text=True, timeout=10
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)
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if "mov,mp4" in moov_result.stdout:
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compatibility_result["streaming_friendly"] = True
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else:
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compatibility_result["recommendations"].append(
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"Consider re-encoding with 'faststart' flag for better streaming"
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)
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elif codec in ["hevc", "h265"]:
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compatibility_result["recommendations"].append(
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"HEVC/H.265 codec may not be supported in all browsers"
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)
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compatibility_result["needs_conversion"] = True
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else:
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compatibility_result["recommendations"].append(
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f"Codec '{codec}' may not be web-compatible. Consider H.264"
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)
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compatibility_result["needs_conversion"] = True
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except Exception as e:
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compatibility_result["recommendations"].append(
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f"Could not analyze compatibility: {e}"
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)
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return compatibility_result
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def test_django_video_access(video_id):
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"""
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Test accessing the video through Django ORM and methods.
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"""
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access_result = {
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"orm_accessible": False,
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"has_raw_file": False,
|
|
226
|
+
"has_processed_file": False,
|
|
227
|
+
"active_file_path": None,
|
|
228
|
+
"file_size": 0,
|
|
229
|
+
"errors": [],
|
|
230
|
+
}
|
|
231
|
+
|
|
232
|
+
try:
|
|
233
|
+
video = VideoFile.objects.get(pk=video_id)
|
|
234
|
+
access_result["orm_accessible"] = True
|
|
235
|
+
|
|
236
|
+
# Check raw file
|
|
237
|
+
if hasattr(video, "raw_file") and video.raw_file:
|
|
238
|
+
try:
|
|
239
|
+
raw_path = video.raw_file.path
|
|
240
|
+
if Path(raw_path).exists():
|
|
241
|
+
access_result["has_raw_file"] = True
|
|
242
|
+
access_result["active_file_path"] = raw_path
|
|
243
|
+
access_result["file_size"] = Path(raw_path).stat().st_size
|
|
244
|
+
except Exception as e:
|
|
245
|
+
access_result["errors"].append(f"Raw file access error: {e}")
|
|
246
|
+
|
|
247
|
+
# Check processed file
|
|
248
|
+
if hasattr(video, "processed_file") and video.processed_file:
|
|
249
|
+
try:
|
|
250
|
+
processed_path = video.processed_file.path
|
|
251
|
+
if Path(processed_path).exists():
|
|
252
|
+
access_result["has_processed_file"] = True
|
|
253
|
+
if not access_result["active_file_path"]:
|
|
254
|
+
access_result["active_file_path"] = processed_path
|
|
255
|
+
access_result["file_size"] = Path(processed_path).stat().st_size
|
|
256
|
+
except Exception as e:
|
|
257
|
+
access_result["errors"].append(f"Processed file access error: {e}")
|
|
258
|
+
|
|
259
|
+
# Test video streaming methods
|
|
260
|
+
try:
|
|
261
|
+
if hasattr(video, "get_active_file_path"):
|
|
262
|
+
active_path = video.get_active_file_path()
|
|
263
|
+
if active_path and Path(active_path).exists():
|
|
264
|
+
access_result["active_file_path"] = str(active_path)
|
|
265
|
+
access_result["file_size"] = Path(active_path).stat().st_size
|
|
266
|
+
except Exception as e:
|
|
267
|
+
access_result["errors"].append(f"Active file path method error: {e}")
|
|
268
|
+
|
|
269
|
+
except VideoFile.DoesNotExist:
|
|
270
|
+
access_result["errors"].append(
|
|
271
|
+
f"Video with ID {video_id} not found in database"
|
|
272
|
+
)
|
|
273
|
+
except Exception as e:
|
|
274
|
+
access_result["errors"].append(f"Django access error: {e}")
|
|
275
|
+
|
|
276
|
+
return access_result
|
|
277
|
+
|
|
278
|
+
|
|
279
|
+
def main():
|
|
280
|
+
import argparse
|
|
281
|
+
|
|
282
|
+
parser = argparse.ArgumentParser(
|
|
283
|
+
description="Comprehensive video file validation script for debugging streaming issues."
|
|
284
|
+
)
|
|
285
|
+
parser.add_argument(
|
|
286
|
+
"video_id",
|
|
287
|
+
nargs="?",
|
|
288
|
+
type=int,
|
|
289
|
+
default=5,
|
|
290
|
+
help="ID of the video to validate (default: 5)",
|
|
291
|
+
)
|
|
292
|
+
args = parser.parse_args()
|
|
293
|
+
|
|
294
|
+
video_id = args.video_id
|
|
295
|
+
|
|
296
|
+
print("š¬ COMPREHENSIVE VIDEO VALIDATION")
|
|
297
|
+
print("=" * 50)
|
|
298
|
+
print(f"Testing video ID: {video_id}")
|
|
299
|
+
print()
|
|
300
|
+
|
|
301
|
+
# Test Django access
|
|
302
|
+
print("1ļøā£ Testing Django ORM Access...")
|
|
303
|
+
django_result = test_django_video_access(video_id)
|
|
304
|
+
|
|
305
|
+
if django_result["orm_accessible"]:
|
|
306
|
+
print("ā
Video found in database")
|
|
307
|
+
print(f"š Active file path: {django_result['active_file_path']}")
|
|
308
|
+
print(f"š File size: {django_result['file_size'] / (1024 * 1024):.1f} MB")
|
|
309
|
+
|
|
310
|
+
if django_result["errors"]:
|
|
311
|
+
for error in django_result["errors"]:
|
|
312
|
+
print(f"ā ļø {error}")
|
|
313
|
+
else:
|
|
314
|
+
print("ā Video not accessible through Django")
|
|
315
|
+
for error in django_result["errors"]:
|
|
316
|
+
print(f"ā {error}")
|
|
317
|
+
return
|
|
318
|
+
|
|
319
|
+
# Get video file path for further testing
|
|
320
|
+
video_path = django_result["active_file_path"]
|
|
321
|
+
if not video_path or not Path(video_path).exists():
|
|
322
|
+
print("ā No valid video file path found")
|
|
323
|
+
return
|
|
324
|
+
|
|
325
|
+
print("\n2ļøā£ Testing File System Access...")
|
|
326
|
+
file_path = Path(video_path)
|
|
327
|
+
print(f"š Path: {file_path}")
|
|
328
|
+
print(f"ā
File exists: {file_path.exists()}")
|
|
329
|
+
print(f"š Size: {file_path.stat().st_size / (1024 * 1024):.1f} MB")
|
|
330
|
+
print(f"š Readable: {os.access(file_path, os.R_OK)}")
|
|
331
|
+
|
|
332
|
+
# Check FFmpeg availability
|
|
333
|
+
print("\n3ļøā£ Checking FFmpeg Availability...")
|
|
334
|
+
if not check_ffmpeg_available():
|
|
335
|
+
print("ā FFmpeg not available - cannot perform detailed video analysis")
|
|
336
|
+
print("š” Install FFmpeg: sudo apt-get install ffmpeg")
|
|
337
|
+
return
|
|
338
|
+
else:
|
|
339
|
+
print("ā
FFmpeg is available")
|
|
340
|
+
|
|
341
|
+
# Analyze video with FFmpeg
|
|
342
|
+
print("\n4ļøā£ Video Analysis with FFmpeg...")
|
|
343
|
+
analysis = analyze_video_with_ffmpeg(video_path)
|
|
344
|
+
|
|
345
|
+
if analysis["file_readable"]:
|
|
346
|
+
print("ā
File is readable by FFmpeg")
|
|
347
|
+
print(f"š„ Has video stream: {analysis['has_video_stream']}")
|
|
348
|
+
print(f"š Has audio stream: {analysis['has_audio_stream']}")
|
|
349
|
+
print(
|
|
350
|
+
f"ā±ļø Duration: {analysis['duration']:.2f}s"
|
|
351
|
+
if analysis["duration"]
|
|
352
|
+
else "ā±ļø Duration: Unknown"
|
|
353
|
+
)
|
|
354
|
+
print(f"š¬ Codec: {analysis['codec'] or 'Unknown'}")
|
|
355
|
+
print(f"š Resolution: {analysis['resolution'] or 'Unknown'}")
|
|
356
|
+
print(f"š¼ļø Frame count: {analysis['frame_count'] or 'Unknown'}")
|
|
357
|
+
else:
|
|
358
|
+
print("ā File is NOT readable by FFmpeg")
|
|
359
|
+
|
|
360
|
+
if analysis["errors"]:
|
|
361
|
+
print("\nā Errors found:")
|
|
362
|
+
for error in analysis["errors"]:
|
|
363
|
+
print(f" ⢠{error}")
|
|
364
|
+
|
|
365
|
+
if analysis["warnings"]:
|
|
366
|
+
print("\nā ļø Warnings:")
|
|
367
|
+
for warning in analysis["warnings"]:
|
|
368
|
+
print(f" ⢠{warning}")
|
|
369
|
+
|
|
370
|
+
# Test streaming compatibility
|
|
371
|
+
print("\n5ļøā£ Testing Web Streaming Compatibility...")
|
|
372
|
+
compatibility = test_video_streaming_compatibility(video_path)
|
|
373
|
+
|
|
374
|
+
print(f"š Web compatible: {compatibility['web_compatible']}")
|
|
375
|
+
print(f"š” Streaming friendly: {compatibility['streaming_friendly']}")
|
|
376
|
+
print(f"š Needs conversion: {compatibility['needs_conversion']}")
|
|
377
|
+
|
|
378
|
+
if compatibility["recommendations"]:
|
|
379
|
+
print("\nš” Recommendations:")
|
|
380
|
+
for rec in compatibility["recommendations"]:
|
|
381
|
+
print(f" ⢠{rec}")
|
|
382
|
+
|
|
383
|
+
# Final diagnosis
|
|
384
|
+
print("\n6ļøā£ DIAGNOSIS")
|
|
385
|
+
print("=" * 30)
|
|
386
|
+
|
|
387
|
+
if not analysis["file_readable"]:
|
|
388
|
+
print("š“ CRITICAL: Video file is corrupted or unreadable")
|
|
389
|
+
print("š Action: Replace or re-encode the video file")
|
|
390
|
+
elif not analysis["has_video_stream"]:
|
|
391
|
+
print("š“ CRITICAL: No video stream found")
|
|
392
|
+
print("š Action: Check if file is actually a video")
|
|
393
|
+
elif not compatibility["web_compatible"]:
|
|
394
|
+
print("š” WARNING: Video may not be web-compatible")
|
|
395
|
+
print("š Action: Consider re-encoding to H.264")
|
|
396
|
+
elif not compatibility["streaming_friendly"]:
|
|
397
|
+
print("š” WARNING: Video not optimized for streaming")
|
|
398
|
+
print("š Action: Re-encode with faststart flag")
|
|
399
|
+
else:
|
|
400
|
+
print("š¢ GOOD: Video appears to be valid and web-compatible")
|
|
401
|
+
print("š Issue likely in Django streaming view or network connection")
|
|
402
|
+
|
|
403
|
+
print("\nš§ Suggested fixes for streaming issues:")
|
|
404
|
+
print("1. Check Django VideoStreamView implementation")
|
|
405
|
+
print("2. Verify file permissions (readable by web server)")
|
|
406
|
+
print("3. Test with a different video file")
|
|
407
|
+
print("4. Check browser developer tools for specific errors")
|
|
408
|
+
print("5. Consider re-encoding the video:")
|
|
409
|
+
print(
|
|
410
|
+
f" ffmpeg -i '{video_path}' -c:v libx264 -profile:v baseline -level 3.0 -movflags faststart output.mp4"
|
|
411
|
+
)
|
|
412
|
+
|
|
413
|
+
|
|
414
|
+
if __name__ == "__main__":
|
|
415
|
+
main()
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
from .video_splitter import split_video
|
|
2
|
+
from .names import (
|
|
3
|
+
get_video_key,
|
|
4
|
+
identify_video_key,
|
|
5
|
+
get_video_key_regex_by_examination_alias,
|
|
6
|
+
)
|
|
7
|
+
|
|
8
|
+
# Add necessary functions from ffmpeg_wrapper
|
|
9
|
+
from .ffmpeg_wrapper import (
|
|
10
|
+
get_stream_info,
|
|
11
|
+
assemble_video_from_frames,
|
|
12
|
+
transcode_video,
|
|
13
|
+
transcode_videofile_if_required,
|
|
14
|
+
extract_frames as ffmpeg_extract_frames, # Alias to avoid potential name clash if 'extract_frames' was used elsewhere directly from __init__
|
|
15
|
+
)
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
__all__ = [
|
|
19
|
+
# Keep existing
|
|
20
|
+
"split_video",
|
|
21
|
+
"get_video_key",
|
|
22
|
+
"identify_video_key",
|
|
23
|
+
"get_video_key_regex_by_examination_alias",
|
|
24
|
+
# Add from ffmpeg_wrapper
|
|
25
|
+
"get_stream_info",
|
|
26
|
+
"assemble_video_from_frames",
|
|
27
|
+
"transcode_video",
|
|
28
|
+
"transcode_videofile_if_required",
|
|
29
|
+
"ffmpeg_extract_frames", # Use the alias if needed
|
|
30
|
+
]
|
|
@@ -0,0 +1,100 @@
|
|
|
1
|
+
import os
|
|
2
|
+
from pathlib import Path
|
|
3
|
+
from typing import TYPE_CHECKING, List, Optional
|
|
4
|
+
|
|
5
|
+
from django.db import transaction
|
|
6
|
+
from icecream import ic
|
|
7
|
+
from tqdm import tqdm
|
|
8
|
+
|
|
9
|
+
if TYPE_CHECKING:
|
|
10
|
+
from ...models.media import VideoFile
|
|
11
|
+
|
|
12
|
+
import io
|
|
13
|
+
|
|
14
|
+
from django.core.files import File
|
|
15
|
+
|
|
16
|
+
from .ffmpeg_wrapper import extract_frames as ffmpeg_extract_frames
|
|
17
|
+
|
|
18
|
+
|
|
19
|
+
def prepare_bulk_frames(frame_paths: List[Path]):
|
|
20
|
+
"""
|
|
21
|
+
Reads the frame paths into memory as Django File objects.
|
|
22
|
+
This avoids 'seek of closed file' errors by using BytesIO for each frame.
|
|
23
|
+
"""
|
|
24
|
+
for path in frame_paths:
|
|
25
|
+
frame_number = int(path.stem.split("_")[1])
|
|
26
|
+
with open(path, "rb") as f:
|
|
27
|
+
content = f.read()
|
|
28
|
+
file_obj = File(io.BytesIO(content), name=path.name)
|
|
29
|
+
yield frame_number, file_obj
|
|
30
|
+
|
|
31
|
+
|
|
32
|
+
def extract_frames(
|
|
33
|
+
video_path: Path,
|
|
34
|
+
output_dir: Path,
|
|
35
|
+
quality: int,
|
|
36
|
+
ext: str = "jpg",
|
|
37
|
+
fps: Optional[float] = None,
|
|
38
|
+
) -> List[Path]:
|
|
39
|
+
"""Extracts frames from a video file using ffmpeg_wrapper."""
|
|
40
|
+
# Ensure output directory exists
|
|
41
|
+
output_dir.mkdir(parents=True, exist_ok=True)
|
|
42
|
+
return ffmpeg_extract_frames(video_path, output_dir, quality, ext, fps)
|
|
43
|
+
|
|
44
|
+
|
|
45
|
+
def initialize_frame_objects(video: "VideoFile", extracted_paths: List[Path]):
|
|
46
|
+
"""
|
|
47
|
+
Initialize frame objects for the extracted frames and update state.
|
|
48
|
+
"""
|
|
49
|
+
state = video.get_or_create_state()
|
|
50
|
+
# Check state before proceeding
|
|
51
|
+
if state.frames_initialized:
|
|
52
|
+
ic(f"Frames already initialized for video {video.video_hash}, skipping.")
|
|
53
|
+
return
|
|
54
|
+
|
|
55
|
+
if not extracted_paths:
|
|
56
|
+
ic(
|
|
57
|
+
f"No extracted paths provided for video {video.video_hash}, cannot initialize frames."
|
|
58
|
+
)
|
|
59
|
+
return
|
|
60
|
+
|
|
61
|
+
video.frame_count = len(extracted_paths)
|
|
62
|
+
frames_to_create = []
|
|
63
|
+
batch_size = int(os.environ.get("DJANGO_FFMPEG_EXTRACT_FRAME_BATCHSIZE", "500"))
|
|
64
|
+
|
|
65
|
+
# Prepare frame data (relative paths for storage)
|
|
66
|
+
frame_dir = video.get_frame_dir_path()
|
|
67
|
+
if not frame_dir:
|
|
68
|
+
raise ValueError(f"Frame directory not set for video {video.video_hash}")
|
|
69
|
+
|
|
70
|
+
storage_base_path = Path(
|
|
71
|
+
video._meta.get_field("raw_file").storage.location
|
|
72
|
+
) # Get storage root
|
|
73
|
+
|
|
74
|
+
for i, path in tqdm(enumerate(extracted_paths, start=1)):
|
|
75
|
+
frame_number = (
|
|
76
|
+
int(path.stem.split("_")[1]) - 1
|
|
77
|
+
) # Assuming frame_0000001.jpg is frame_number 0
|
|
78
|
+
relative_path = path.relative_to(
|
|
79
|
+
storage_base_path
|
|
80
|
+
).as_posix() # Path relative to MEDIA_ROOT
|
|
81
|
+
|
|
82
|
+
# Create Frame instance (without saving yet)
|
|
83
|
+
frame_obj_instance = video.create_frame_object(
|
|
84
|
+
frame_number, image_file=relative_path, extracted=True
|
|
85
|
+
)
|
|
86
|
+
frames_to_create.append(frame_obj_instance)
|
|
87
|
+
|
|
88
|
+
if i % batch_size == 0:
|
|
89
|
+
with transaction.atomic():
|
|
90
|
+
video.bulk_create_frames(frames_to_create)
|
|
91
|
+
frames_to_create.clear()
|
|
92
|
+
|
|
93
|
+
if frames_to_create:
|
|
94
|
+
with transaction.atomic():
|
|
95
|
+
video.bulk_create_frames(frames_to_create)
|
|
96
|
+
|
|
97
|
+
# Update state and save VideoFile (to save frame_count)
|
|
98
|
+
state.frames_initialized = True
|
|
99
|
+
state.save(update_fields=["frames_initialized"])
|
|
100
|
+
video.save(update_fields=["frame_count"]) # Save frame_count on VideoFile
|