endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,622 @@
1
+ import logging
2
+ import os
3
+ import shutil
4
+ from datetime import datetime, timedelta
5
+ from pathlib import Path
6
+
7
+ from django.conf import settings
8
+ from django.core.management.base import BaseCommand, CommandError
9
+
10
+ from endoreg_db.models import VideoFile
11
+
12
+ logger = logging.getLogger(__name__)
13
+
14
+
15
+ class Command(BaseCommand):
16
+ help = "Automated storage management and cleanup to prevent disk space issues"
17
+
18
+ def add_arguments(self, parser):
19
+ parser.add_argument(
20
+ "--dry-run",
21
+ action="store_true",
22
+ help="Show what would be cleaned without actually deleting files",
23
+ )
24
+ parser.add_argument(
25
+ "--force",
26
+ action="store_true",
27
+ help="Force cleanup even if not critically low on space",
28
+ )
29
+ parser.add_argument(
30
+ "--cleanup-frames",
31
+ action="store_true",
32
+ help="Clean up extracted video frames after processing",
33
+ )
34
+ parser.add_argument(
35
+ "--cleanup-old-videos",
36
+ action="store_true",
37
+ help="Clean up old processed videos (keep raw files)",
38
+ )
39
+ parser.add_argument(
40
+ "--cleanup-uploads",
41
+ action="store_true",
42
+ help="Clean up old upload cache files",
43
+ )
44
+ parser.add_argument(
45
+ "--cleanup-logs",
46
+ action="store_true",
47
+ help="Clean up old log files",
48
+ )
49
+ parser.add_argument(
50
+ "--max-age-days",
51
+ type=int,
52
+ default=30,
53
+ help="Maximum age in days for files to keep (default: 30)",
54
+ )
55
+ parser.add_argument(
56
+ "--emergency-threshold",
57
+ type=float,
58
+ default=95.0,
59
+ help="Storage usage percentage that triggers emergency cleanup (default: 95%%)",
60
+ )
61
+
62
+ def handle(self, *args, **options):
63
+ """Main command handler for storage management."""
64
+ self.dry_run = options["dry_run"]
65
+ self.force = options["force"]
66
+ self.max_age_days = options["max_age_days"]
67
+ self.emergency_threshold = options["emergency_threshold"]
68
+
69
+ # Validate emergency_threshold range
70
+ if not (0 <= self.emergency_threshold <= 100):
71
+ raise CommandError(
72
+ "The --emergency-threshold value must be between 0 and 100 (inclusive)."
73
+ )
74
+
75
+ if self.dry_run:
76
+ self.stdout.write(
77
+ self.style.WARNING("DRY RUN MODE - No files will be deleted")
78
+ )
79
+
80
+ try:
81
+ # Check current storage status
82
+ storage_info = self.get_storage_info()
83
+ self.display_storage_status(storage_info)
84
+
85
+ # Determine if emergency cleanup is needed
86
+ needs_emergency_cleanup = (
87
+ storage_info["usage_percent"] >= self.emergency_threshold or self.force
88
+ )
89
+
90
+ if needs_emergency_cleanup:
91
+ self.stdout.write(
92
+ self.style.ERROR(
93
+ f"🚨 EMERGENCY CLEANUP TRIGGERED - Storage at {storage_info['usage_percent']:.1f}%"
94
+ )
95
+ )
96
+ self.emergency_cleanup(options)
97
+ else:
98
+ self.stdout.write(
99
+ self.style.SUCCESS(
100
+ f"✅ Storage usage is acceptable at {storage_info['usage_percent']:.1f}%"
101
+ )
102
+ )
103
+
104
+ # Always run maintenance cleanup if requested
105
+ if any(
106
+ [
107
+ options["cleanup_frames"],
108
+ options["cleanup_old_videos"],
109
+ options["cleanup_uploads"],
110
+ options["cleanup_logs"],
111
+ ]
112
+ ):
113
+ self.maintenance_cleanup(options)
114
+
115
+ # Show final storage status
116
+ final_storage = self.get_storage_info()
117
+ self.display_cleanup_summary(storage_info, final_storage)
118
+
119
+ except Exception as e:
120
+ logger.error(f"Storage management failed: {e}")
121
+ raise CommandError(f"Storage management failed: {e}")
122
+
123
+ def get_storage_info(self):
124
+ """Get current storage information."""
125
+ try:
126
+ # Get storage stats for the root filesystem
127
+ total, used, free = shutil.disk_usage("/")
128
+ usage_percent = (used / total) * 100
129
+
130
+ # Get project-specific storage info
131
+ project_root = Path(settings.BASE_DIR).parent
132
+ project_storage = self.get_directory_size(project_root)
133
+
134
+ return {
135
+ "total_gb": total / (1024**3),
136
+ "used_gb": used / (1024**3),
137
+ "free_gb": free / (1024**3),
138
+ "usage_percent": usage_percent,
139
+ "project_storage_gb": project_storage / (1024**3),
140
+ "critical": usage_percent >= 95.0,
141
+ "warning": usage_percent >= 85.0,
142
+ }
143
+ except Exception as e:
144
+ logger.error(f"Failed to get storage info: {e}")
145
+ raise
146
+
147
+ def get_directory_size(self, path):
148
+ """Calculate total size of a directory."""
149
+ total_size = 0
150
+ try:
151
+ for dirpath, dirnames, filenames in os.walk(path):
152
+ for filename in filenames:
153
+ filepath = os.path.join(dirpath, filename)
154
+ try:
155
+ total_size += os.path.getsize(filepath)
156
+ except (OSError, IOError):
157
+ continue
158
+ except Exception:
159
+ pass
160
+ return total_size
161
+
162
+ def display_storage_status(self, storage_info):
163
+ """Display current storage status."""
164
+ status_color = (
165
+ self.style.ERROR
166
+ if storage_info["critical"]
167
+ else self.style.WARNING
168
+ if storage_info["warning"]
169
+ else self.style.SUCCESS
170
+ )
171
+
172
+ self.stdout.write("\n" + "=" * 60)
173
+ self.stdout.write(status_color("💾 STORAGE STATUS"))
174
+ self.stdout.write("=" * 60)
175
+ self.stdout.write(f"Total Space: {storage_info['total_gb']:.1f} GB")
176
+ self.stdout.write(f"Used Space: {storage_info['used_gb']:.1f} GB")
177
+ self.stdout.write(f"Free Space: {storage_info['free_gb']:.1f} GB")
178
+ self.stdout.write(
179
+ status_color(f"Usage: {storage_info['usage_percent']:.1f}%")
180
+ )
181
+ self.stdout.write(f"Project Size: {storage_info['project_storage_gb']:.1f} GB")
182
+
183
+ if storage_info["critical"]:
184
+ self.stdout.write(self.style.ERROR("🚨 CRITICAL: Storage critically low!"))
185
+ elif storage_info["warning"]:
186
+ self.stdout.write(self.style.WARNING("⚠️ WARNING: Storage getting low"))
187
+
188
+ def emergency_cleanup(self, options):
189
+ """Perform emergency cleanup to free critical storage space."""
190
+ self.stdout.write(self.style.ERROR("\n🚨 PERFORMING EMERGENCY CLEANUP"))
191
+
192
+ total_freed = 0
193
+
194
+ # 1. AGGRESSIVE: Clean up ALL extracted frames (usually largest space saver)
195
+ frames_freed = self.cleanup_all_extracted_frames()
196
+ total_freed += frames_freed
197
+
198
+ # 2. AGGRESSIVE: Clean up ALL upload cache
199
+ uploads_freed = self.cleanup_all_uploads()
200
+ total_freed += uploads_freed
201
+
202
+ # 3. Clean up old logs
203
+ logs_freed = self.cleanup_old_logs()
204
+ total_freed += logs_freed
205
+
206
+ # 4. Clean up temporary files
207
+ temp_freed = self.cleanup_temp_files()
208
+ total_freed += temp_freed
209
+
210
+ # 5. If still critical, clean up ALL processed videos (more aggressive)
211
+ storage_info = self.get_storage_info()
212
+ if storage_info["usage_percent"] >= 90.0:
213
+ # Use 0 days to clean up ALL processed videos
214
+ videos_freed = self.cleanup_all_processed_videos()
215
+ total_freed += videos_freed
216
+
217
+ self.stdout.write(
218
+ self.style.SUCCESS(
219
+ f"✅ Emergency cleanup completed: {total_freed / (1024**3):.2f} GB freed"
220
+ )
221
+ )
222
+
223
+ def maintenance_cleanup(self, options):
224
+ """Perform regular maintenance cleanup."""
225
+ self.stdout.write(self.style.SUCCESS("\n🔧 PERFORMING MAINTENANCE CLEANUP"))
226
+
227
+ total_freed = 0
228
+
229
+ if options["cleanup_frames"]:
230
+ freed = self.cleanup_extracted_frames()
231
+ total_freed += freed
232
+
233
+ if options["cleanup_old_videos"]:
234
+ freed = self.cleanup_old_processed_videos(self.max_age_days)
235
+ total_freed += freed
236
+
237
+ if options["cleanup_uploads"]:
238
+ freed = self.cleanup_upload_cache()
239
+ total_freed += freed
240
+
241
+ if options["cleanup_logs"]:
242
+ freed = self.cleanup_old_logs()
243
+ total_freed += freed
244
+
245
+ self.stdout.write(
246
+ self.style.SUCCESS(
247
+ f"✅ Maintenance cleanup completed: {total_freed / (1024**3):.2f} GB freed"
248
+ )
249
+ )
250
+
251
+ def cleanup_extracted_frames(self):
252
+ """Clean up extracted video frames that are no longer needed."""
253
+ self.stdout.write("🖼️ Cleaning up extracted video frames...")
254
+
255
+ total_freed = 0
256
+ frames_dir = Path(settings.BASE_DIR).parent / "storage" / "frames"
257
+
258
+ if not frames_dir.exists():
259
+ return 0
260
+
261
+ # Find videos that have completed processing
262
+ completed_videos = VideoFile.objects.filter(
263
+ anonymization_tasks__status="done_processing_anonymization"
264
+ ).distinct()
265
+
266
+ for video in completed_videos:
267
+ try:
268
+ # Find frame directories for this video
269
+ video_frame_dirs = list(frames_dir.glob(f"*{video.video_hash}*"))
270
+
271
+ for frame_dir in video_frame_dirs:
272
+ if frame_dir.is_dir():
273
+ dir_size = self.get_directory_size(frame_dir)
274
+
275
+ if not self.dry_run:
276
+ shutil.rmtree(frame_dir, ignore_errors=True)
277
+
278
+ total_freed += dir_size
279
+ self.stdout.write(
280
+ f" Removed frames for {video.video_hash}: {dir_size / (1024**2):.1f} MB"
281
+ )
282
+
283
+ except Exception as e:
284
+ logger.warning(
285
+ f"Failed to clean frames for video {video.video_hash}: {e}"
286
+ )
287
+ continue
288
+
289
+ self.stdout.write(f"✅ Frames cleanup: {total_freed / (1024**3):.2f} GB freed")
290
+ return total_freed
291
+
292
+ def cleanup_upload_cache(self):
293
+ """Clean up old upload cache files."""
294
+ self.stdout.write("📤 Cleaning up upload cache...")
295
+
296
+ total_freed = 0
297
+ uploads_dir = Path(settings.BASE_DIR).parent / "storage" / "uploads"
298
+
299
+ if not uploads_dir.exists():
300
+ return 0
301
+
302
+ cutoff_date = datetime.now() - timedelta(days=self.max_age_days)
303
+
304
+ for file_path in uploads_dir.rglob("*"):
305
+ if file_path.is_file():
306
+ try:
307
+ file_mtime = datetime.fromtimestamp(file_path.stat().st_mtime)
308
+
309
+ if file_mtime < cutoff_date:
310
+ file_size = file_path.stat().st_size
311
+
312
+ if not self.dry_run:
313
+ file_path.unlink()
314
+
315
+ total_freed += file_size
316
+
317
+ except Exception as e:
318
+ logger.warning(f"Failed to clean upload file {file_path}: {e}")
319
+ continue
320
+
321
+ self.stdout.write(
322
+ f"✅ Upload cache cleanup: {total_freed / (1024**3):.2f} GB freed"
323
+ )
324
+ return total_freed
325
+
326
+ def cleanup_old_logs(self):
327
+ """Clean up old log files."""
328
+ self.stdout.write("📋 Cleaning up old log files...")
329
+
330
+ total_freed = 0
331
+ project_root = Path(settings.BASE_DIR).parent
332
+
333
+ # Find and clean large log files
334
+ for log_file in project_root.rglob("*.log"):
335
+ try:
336
+ if log_file.stat().st_size > 10 * 1024 * 1024: # Files larger than 10MB
337
+ file_size = log_file.stat().st_size
338
+
339
+ if not self.dry_run:
340
+ # Truncate instead of delete to preserve file handles
341
+ with open(log_file, "w") as f:
342
+ f.write("")
343
+
344
+ total_freed += file_size
345
+ self.stdout.write(
346
+ f" Truncated {log_file}: {file_size / (1024**2):.1f} MB"
347
+ )
348
+
349
+ except Exception as e:
350
+ logger.warning(f"Failed to clean log file {log_file}: {e}")
351
+ continue
352
+
353
+ self.stdout.write(f"✅ Log cleanup: {total_freed / (1024**3):.2f} GB freed")
354
+ return total_freed
355
+
356
+ def cleanup_temp_files(self):
357
+ """Clean up temporary files."""
358
+ self.stdout.write("🗂️ Cleaning up temporary files...")
359
+
360
+ total_freed = 0
361
+ temp_dirs = [
362
+ "/tmp",
363
+ Path(settings.BASE_DIR).parent / "data" / "tmp",
364
+ Path(settings.BASE_DIR).parent / "storage" / "tmp",
365
+ ]
366
+
367
+ for temp_dir in temp_dirs:
368
+ if not Path(temp_dir).exists():
369
+ continue
370
+
371
+ try:
372
+ for item in Path(temp_dir).glob("*"):
373
+ if item.is_file() and item.name.startswith(("tmp", "temp")):
374
+ file_size = item.stat().st_size
375
+
376
+ if not self.dry_run:
377
+ item.unlink()
378
+
379
+ total_freed += file_size
380
+
381
+ except Exception as e:
382
+ logger.warning(f"Failed to clean temp dir {temp_dir}: {e}")
383
+ continue
384
+
385
+ self.stdout.write(
386
+ f"✅ Temp files cleanup: {total_freed / (1024**3):.2f} GB freed"
387
+ )
388
+ return total_freed
389
+
390
+ def cleanup_old_processed_videos(self, max_age_days):
391
+ """Clean up old processed videos while keeping raw files."""
392
+ self.stdout.write(
393
+ f"🎥 Cleaning up processed videos older than {max_age_days} days..."
394
+ )
395
+
396
+ total_freed = 0
397
+ cutoff_date = datetime.now() - timedelta(days=max_age_days)
398
+
399
+ # Find old processed videos - fix the date filtering
400
+ try:
401
+ old_videos = VideoFile.objects.filter(
402
+ created_at__lt=cutoff_date, # Use created_at instead of date_created
403
+ processed_file__isnull=False,
404
+ ).exclude(
405
+ anonymization_tasks__status__in=[
406
+ "processing_anonymization",
407
+ "extracting_frames",
408
+ ]
409
+ )
410
+
411
+ self.stdout.write(
412
+ f"Found {old_videos.count()} processed videos older than {max_age_days} days"
413
+ )
414
+
415
+ except Exception:
416
+ # Fallback: try different date field names
417
+ try:
418
+ old_videos = VideoFile.objects.filter(
419
+ processed_file__isnull=False
420
+ ).exclude(
421
+ anonymization_tasks__status__in=[
422
+ "processing_anonymization",
423
+ "extracting_frames",
424
+ ]
425
+ )
426
+ self.stdout.write(
427
+ f"Using fallback filter, found {old_videos.count()} processed videos"
428
+ )
429
+ except Exception as e2:
430
+ logger.error(f"Failed to query videos: {e2}")
431
+ return total_freed
432
+
433
+ for video in old_videos:
434
+ try:
435
+ if video.processed_file and hasattr(video.processed_file, "path"):
436
+ processed_path = Path(video.processed_file.path)
437
+
438
+ if processed_path.exists():
439
+ file_size = processed_path.stat().st_size
440
+
441
+ if not self.dry_run:
442
+ processed_path.unlink()
443
+ video.processed_file = None
444
+ video.save(update_fields=["processed_file"])
445
+
446
+ total_freed += file_size
447
+ self.stdout.write(
448
+ f" Removed processed video {video.video_hash}: {file_size / (1024**2):.1f} MB"
449
+ )
450
+
451
+ except Exception as e:
452
+ logger.warning(
453
+ f"Failed to clean processed video {video.video_hash}: {e}"
454
+ )
455
+ continue
456
+
457
+ self.stdout.write(
458
+ f"✅ Processed videos cleanup: {total_freed / (1024**3):.2f} GB freed"
459
+ )
460
+ return total_freed
461
+
462
+ def cleanup_all_extracted_frames(self):
463
+ """More aggressive cleanup - remove ALL extracted frames regardless of status."""
464
+ self.stdout.write("🖼️ AGGRESSIVE: Cleaning up ALL extracted video frames...")
465
+
466
+ total_freed = 0
467
+ frames_dir = Path(settings.BASE_DIR).parent / "storage" / "frames"
468
+
469
+ if not frames_dir.exists():
470
+ self.stdout.write("No frames directory found")
471
+ return 0
472
+
473
+ try:
474
+ # Get directory size before cleanup
475
+ initial_size = self.get_directory_size(frames_dir)
476
+ self.stdout.write(
477
+ f"Found frames directory with {initial_size / (1024**3):.2f} GB"
478
+ )
479
+
480
+ # Remove all frame directories and files
481
+ for item in frames_dir.iterdir():
482
+ if item.is_dir():
483
+ dir_size = self.get_directory_size(item)
484
+
485
+ if not self.dry_run:
486
+ shutil.rmtree(item, ignore_errors=True)
487
+
488
+ total_freed += dir_size
489
+ self.stdout.write(
490
+ f" Removed frame directory {item.name}: {dir_size / (1024**2):.1f} MB"
491
+ )
492
+ elif item.is_file():
493
+ file_size = item.stat().st_size
494
+
495
+ if not self.dry_run:
496
+ item.unlink()
497
+
498
+ total_freed += file_size
499
+ self.stdout.write(
500
+ f" Removed frame file {item.name}: {file_size / (1024**2):.1f} MB"
501
+ )
502
+
503
+ except Exception as e:
504
+ logger.error(f"Failed to clean frames directory: {e}")
505
+
506
+ self.stdout.write(
507
+ f"✅ Aggressive frames cleanup: {total_freed / (1024**3):.2f} GB freed"
508
+ )
509
+ return total_freed
510
+
511
+ def cleanup_all_uploads(self):
512
+ """More aggressive cleanup - remove ALL upload cache files."""
513
+ self.stdout.write("📤 AGGRESSIVE: Cleaning up ALL upload cache...")
514
+
515
+ total_freed = 0
516
+ uploads_dir = Path(settings.BASE_DIR).parent / "storage" / "uploads"
517
+
518
+ if not uploads_dir.exists():
519
+ return 0
520
+
521
+ try:
522
+ for item in uploads_dir.rglob("*"):
523
+ if item.is_file():
524
+ file_size = item.stat().st_size
525
+
526
+ if not self.dry_run:
527
+ item.unlink()
528
+
529
+ total_freed += file_size
530
+
531
+ except Exception as e:
532
+ logger.error(f"Failed to clean uploads directory: {e}")
533
+
534
+ self.stdout.write(
535
+ f"✅ Aggressive upload cleanup: {total_freed / (1024**3):.2f} GB freed"
536
+ )
537
+ return total_freed
538
+
539
+ def cleanup_all_processed_videos(self):
540
+ """AGGRESSIVE: Clean up ALL processed videos while keeping raw files."""
541
+ self.stdout.write("🎥 AGGRESSIVE: Cleaning up ALL processed videos...")
542
+
543
+ total_freed = 0
544
+
545
+ try:
546
+ # Find ALL processed videos
547
+ processed_videos = VideoFile.objects.filter(
548
+ processed_file__isnull=False
549
+ ).exclude(
550
+ anonymization_tasks__status__in=[
551
+ "processing_anonymization",
552
+ "extracting_frames",
553
+ ]
554
+ )
555
+
556
+ self.stdout.write(
557
+ f"Found {processed_videos.count()} processed videos to clean"
558
+ )
559
+
560
+ for video in processed_videos:
561
+ try:
562
+ freed = self._cleanup_processed_video_file(video)
563
+ total_freed += freed
564
+ except Exception as e:
565
+ logger.warning(
566
+ f"Failed to clean processed video {video.video_hash}: {e}"
567
+ )
568
+ continue
569
+
570
+ except Exception as e:
571
+ logger.error(f"Failed to query processed videos: {e}")
572
+
573
+ self.stdout.write(
574
+ f"✅ Aggressive processed videos cleanup: {total_freed / (1024**3):.2f} GB freed"
575
+ )
576
+ return total_freed
577
+
578
+ def _cleanup_processed_video_file(self, video):
579
+ """
580
+ Helper to clean up a single processed video file, update DB, and return freed size in bytes.
581
+ """
582
+ if video.processed_file and hasattr(video.processed_file, "path"):
583
+ processed_path = Path(video.processed_file.path)
584
+ if processed_path.exists():
585
+ file_size = processed_path.stat().st_size
586
+ if not self.dry_run:
587
+ processed_path.unlink()
588
+ video.processed_file = None
589
+ video.save(update_fields=["processed_file"])
590
+ self.stdout.write(
591
+ f" Removed processed video {video.video_hash}: {file_size / (1024**2):.1f} MB"
592
+ )
593
+ return file_size
594
+ return 0
595
+
596
+ def display_cleanup_summary(self, before, after):
597
+ """Display cleanup summary."""
598
+ freed_gb = before["used_gb"] - after["used_gb"]
599
+
600
+ self.stdout.write("\n" + "=" * 60)
601
+ self.stdout.write(self.style.SUCCESS("📊 CLEANUP SUMMARY"))
602
+ self.stdout.write("=" * 60)
603
+ self.stdout.write(
604
+ f"Before: {before['used_gb']:.1f} GB used ({before['usage_percent']:.1f}%)"
605
+ )
606
+ self.stdout.write(
607
+ f"After: {after['used_gb']:.1f} GB used ({after['usage_percent']:.1f}%)"
608
+ )
609
+ self.stdout.write(self.style.SUCCESS(f"Freed: {freed_gb:.2f} GB"))
610
+
611
+ if after["usage_percent"] < 90.0:
612
+ self.stdout.write(self.style.SUCCESS("✅ Storage levels are now healthy!"))
613
+ elif after["usage_percent"] < 95.0:
614
+ self.stdout.write(
615
+ self.style.WARNING("⚠️ Storage levels improved but still high")
616
+ )
617
+ else:
618
+ self.stdout.write(
619
+ self.style.ERROR(
620
+ "🚨 Storage levels still critical - manual intervention needed"
621
+ )
622
+ )