endoreg-db 0.8.9.32__py3-none-any.whl
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- endoreg_db/__init__.py +0 -0
- endoreg_db/_version.py +34 -0
- endoreg_db/admin.py +97 -0
- endoreg_db/api/serializers/finding_descriptions.py +0 -0
- endoreg_db/api/views/finding_descriptions.py +0 -0
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +17 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/authz/auth.py +78 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +20 -0
- endoreg_db/authz/middleware.py +84 -0
- endoreg_db/authz/permissions.py +138 -0
- endoreg_db/authz/policy.py +224 -0
- endoreg_db/authz/settings.py +64 -0
- endoreg_db/authz/views_auth.py +70 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +99 -0
- endoreg_db/config/__init__.py +0 -0
- endoreg_db/config/env.py +106 -0
- endoreg_db/config/settings/__init__.py +6 -0
- endoreg_db/config/settings/base.py +148 -0
- endoreg_db/config/settings/case_gen.py +32 -0
- endoreg_db/config/settings/dev.py +108 -0
- endoreg_db/config/settings/keycloak.py +177 -0
- endoreg_db/config/settings/prod.py +66 -0
- endoreg_db/config/settings/test.py +72 -0
- endoreg_db/data/__init__.py +135 -0
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/ai_model_label/label/data.yaml +88 -0
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_type/data.yaml +7 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
- endoreg_db/data/case_template/rule_value/.init +0 -0
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
- endoreg_db/data/case_template/template/base.yaml +8 -0
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
- endoreg_db/data/case_template/tmp/_rule_value +13 -0
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
- endoreg_db/data/center/data.yaml +99 -0
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/cardiovascular.yaml +37 -0
- endoreg_db/data/disease/hepatology.yaml +5 -0
- endoreg_db/data/disease/misc.yaml +5 -0
- endoreg_db/data/disease/renal.yaml +5 -0
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
- endoreg_db/data/distribution/date/patient.yaml +7 -0
- endoreg_db/data/distribution/multiple_categorical/.init +0 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscope_type/data.yaml +11 -0
- endoreg_db/data/endoscopy_processor/data.yaml +50 -0
- endoreg_db/data/event/cardiology.yaml +15 -0
- endoreg_db/data/event/neurology.yaml +14 -0
- endoreg_db/data/event/surgery.yaml +13 -0
- endoreg_db/data/event/thrombembolism.yaml +20 -0
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/examination/examinations/data.yaml +172 -0
- endoreg_db/data/examination/time/data.yaml +48 -0
- endoreg_db/data/examination/time-type/data.yaml +5 -0
- endoreg_db/data/examination/type/data.yaml +17 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/00_generic.yaml +35 -0
- endoreg_db/data/finding/00_generic_complication.yaml +9 -0
- endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
- endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
- endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
- endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
- endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
- endoreg_db/data/finding_classification/00_generic.yaml +44 -0
- endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
- endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
- endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
- endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
- endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
- endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
- endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
- endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
- endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
- endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
- endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
- endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
- endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
- endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
- endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_type/data.yaml +39 -0
- endoreg_db/data/gender/data.yaml +42 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/data.yaml +30 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/medication.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
- endoreg_db/data/lab_value/coagulation.yaml +54 -0
- endoreg_db/data/lab_value/electrolytes.yaml +228 -0
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
- endoreg_db/data/lab_value/hematology.yaml +184 -0
- endoreg_db/data/lab_value/hormones.yaml +59 -0
- endoreg_db/data/lab_value/lipids.yaml +53 -0
- endoreg_db/data/lab_value/misc.yaml +76 -0
- endoreg_db/data/lab_value/renal_function.yaml +12 -0
- endoreg_db/data/log_type/data.yaml +57 -0
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/material/material.yaml +91 -0
- endoreg_db/data/medication/anticoagulation.yaml +65 -0
- endoreg_db/data/medication/tah.yaml +70 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
- endoreg_db/data/medication_indication_type/data.yaml +11 -0
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
- endoreg_db/data/medication_intake_time/base.yaml +31 -0
- endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
- endoreg_db/data/medication_schedule/ass.yaml +12 -0
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +59 -0
- endoreg_db/data/network_device_type/data.yaml +12 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
- endoreg_db/data/pdf_type/data.yaml +46 -0
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
- endoreg_db/data/profession/data.yaml +70 -0
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
- endoreg_db/data/requirement/01_patient_data.yaml +93 -0
- endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/old/gender.yaml +0 -0
- endoreg_db/data/requirement/old/lab_value.yaml +441 -0
- endoreg_db/data/requirement/old/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
- endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
- endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set_type/data.yaml +41 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift/m2.yaml +0 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
- endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
- endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
- endoreg_db/data/unit/concentration.yaml +115 -0
- endoreg_db/data/unit/data.yaml +17 -0
- endoreg_db/data/unit/length.yaml +31 -0
- endoreg_db/data/unit/misc.yaml +20 -0
- endoreg_db/data/unit/rate.yaml +6 -0
- endoreg_db/data/unit/time.yaml +48 -0
- endoreg_db/data/unit/volume.yaml +35 -0
- endoreg_db/data/unit/weight.yaml +38 -0
- endoreg_db/data/waste/data.yaml +12 -0
- endoreg_db/exceptions.py +24 -0
- endoreg_db/export/frames/export.py +6 -0
- endoreg_db/export/frames/export_frames_with_labels.py +616 -0
- endoreg_db/factories/__init__.py +0 -0
- endoreg_db/forms/__init__.py +4 -0
- endoreg_db/forms/examination_form.py +12 -0
- endoreg_db/forms/patient_finding_intervention_form.py +40 -0
- endoreg_db/forms/patient_form.py +23 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -0
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
- endoreg_db/forms/settings/__init__.py +11 -0
- endoreg_db/forms/unit.py +7 -0
- endoreg_db/helpers/__init__.py +0 -0
- endoreg_db/helpers/count_db.py +48 -0
- endoreg_db/helpers/data_loader.py +280 -0
- endoreg_db/helpers/default_objects.py +414 -0
- endoreg_db/helpers/download_segmentation_model.py +32 -0
- endoreg_db/helpers/interact.py +1 -0
- endoreg_db/helpers/test_video_helper.py +127 -0
- endoreg_db/import_files/__init__.py +27 -0
- endoreg_db/import_files/context/__init__.py +7 -0
- endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
- endoreg_db/import_files/context/ensure_center.py +17 -0
- endoreg_db/import_files/context/file_lock.py +66 -0
- endoreg_db/import_files/context/import_context.py +42 -0
- endoreg_db/import_files/context/validate_directories.py +57 -0
- endoreg_db/import_files/file_storage/__init__.py +15 -0
- endoreg_db/import_files/file_storage/create_report_file.py +99 -0
- endoreg_db/import_files/file_storage/create_video_file.py +104 -0
- endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
- endoreg_db/import_files/file_storage/state_management.py +463 -0
- endoreg_db/import_files/file_storage/storage.py +42 -0
- endoreg_db/import_files/import_service.md +26 -0
- endoreg_db/import_files/processing/__init__.py +11 -0
- endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
- endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
- endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
- endoreg_db/import_files/pseudonymization/__init__.py +0 -0
- endoreg_db/import_files/pseudonymization/fake.py +52 -0
- endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
- endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
- endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
- endoreg_db/import_files/report_import_service.py +147 -0
- endoreg_db/import_files/video_import_service.py +154 -0
- endoreg_db/logger_conf.py +156 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +132 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
- endoreg_db/management/commands/export_frame_annot.py +196 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
- endoreg_db/management/commands/fix_video_paths.py +186 -0
- endoreg_db/management/commands/import_report.py +361 -0
- endoreg_db/management/commands/list_routes.py +20 -0
- endoreg_db/management/commands/load_ai_model_data.py +83 -0
- endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
- endoreg_db/management/commands/load_base_db_data.py +63 -0
- endoreg_db/management/commands/load_center_data.py +68 -0
- endoreg_db/management/commands/load_contraindication_data.py +39 -0
- endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
- endoreg_db/management/commands/load_disease_classification_data.py +38 -0
- endoreg_db/management/commands/load_disease_data.py +59 -0
- endoreg_db/management/commands/load_distribution_data.py +63 -0
- endoreg_db/management/commands/load_endoscope_data.py +58 -0
- endoreg_db/management/commands/load_event_data.py +39 -0
- endoreg_db/management/commands/load_examination_data.py +78 -0
- endoreg_db/management/commands/load_examination_indication_data.py +85 -0
- endoreg_db/management/commands/load_finding_data.py +115 -0
- endoreg_db/management/commands/load_gender_data.py +37 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +142 -0
- endoreg_db/management/commands/load_information_source.py +46 -0
- endoreg_db/management/commands/load_lab_value_data.py +52 -0
- endoreg_db/management/commands/load_legacy_data.py +303 -0
- endoreg_db/management/commands/load_medication_data.py +104 -0
- endoreg_db/management/commands/load_name_data.py +36 -0
- endoreg_db/management/commands/load_organ_data.py +39 -0
- endoreg_db/management/commands/load_pdf_type_data.py +58 -0
- endoreg_db/management/commands/load_profession_data.py +40 -0
- endoreg_db/management/commands/load_qualification_data.py +56 -0
- endoreg_db/management/commands/load_report_reader_flag_data.py +40 -0
- endoreg_db/management/commands/load_requirement_data.py +207 -0
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/load_risk_data.py +57 -0
- endoreg_db/management/commands/load_shift_data.py +57 -0
- endoreg_db/management/commands/load_tag_data.py +54 -0
- endoreg_db/management/commands/load_unit_data.py +40 -0
- endoreg_db/management/commands/load_user_groups.py +26 -0
- endoreg_db/management/commands/model_input.py +169 -0
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- endoreg_db/utils/check_video_files.py +175 -0
- endoreg_db/utils/cropping.py +30 -0
- endoreg_db/utils/dataloader.py +285 -0
- endoreg_db/utils/dates.py +59 -0
- endoreg_db/utils/defaults/set_default_center.py +33 -0
- endoreg_db/utils/env.py +37 -0
- endoreg_db/utils/extract_specific_frames.py +87 -0
- endoreg_db/utils/file_operations.py +70 -0
- endoreg_db/utils/fix_video_path_direct.py +157 -0
- endoreg_db/utils/frame_anonymization_utils.py +463 -0
- endoreg_db/utils/hashs.py +138 -0
- endoreg_db/utils/links/__init__.py +0 -0
- endoreg_db/utils/links/requirement_link.py +237 -0
- endoreg_db/utils/mime_types.py +0 -0
- endoreg_db/utils/names.py +82 -0
- endoreg_db/utils/ocr.py +195 -0
- endoreg_db/utils/operation_log.py +87 -0
- endoreg_db/utils/parse_and_generate_yaml.py +45 -0
- endoreg_db/utils/paths.py +159 -0
- endoreg_db/utils/permissions.py +160 -0
- endoreg_db/utils/pipelines/Readme.md +235 -0
- endoreg_db/utils/pipelines/__init__.py +0 -0
- endoreg_db/utils/pipelines/process_video_dir.py +144 -0
- endoreg_db/utils/product/__init__.py +0 -0
- endoreg_db/utils/product/sum_emissions.py +22 -0
- endoreg_db/utils/product/sum_weights.py +20 -0
- endoreg_db/utils/pydantic_models/__init__.py +5 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/requirement_helpers.py +0 -0
- endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
- endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
- endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
- endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
- endoreg_db/utils/setup_config.py +196 -0
- endoreg_db/utils/storage.py +117 -0
- endoreg_db/utils/translation.py +31 -0
- endoreg_db/utils/uuid.py +5 -0
- endoreg_db/utils/validate_endo_roi.py +33 -0
- endoreg_db/utils/validate_subcategory_dict.py +93 -0
- endoreg_db/utils/validate_video_detailed.py +415 -0
- endoreg_db/utils/video/__init__.py +30 -0
- endoreg_db/utils/video/extract_frames.py +100 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
- endoreg_db/utils/video/names.py +47 -0
- endoreg_db/utils/video/streaming_processor.py +386 -0
- endoreg_db/utils/video/video_splitter.py +105 -0
- endoreg_db/versioning.md +79 -0
- endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
- endoreg_db/views/__init__.py +157 -0
- endoreg_db/views/anonymization/__init__.py +31 -0
- endoreg_db/views/anonymization/media_management.py +486 -0
- endoreg_db/views/anonymization/overview.py +307 -0
- endoreg_db/views/anonymization/validate.py +310 -0
- endoreg_db/views/auth/__init__.py +13 -0
- endoreg_db/views/auth/keycloak.py +146 -0
- endoreg_db/views/examination/__init__.py +30 -0
- endoreg_db/views/examination/examination.py +37 -0
- endoreg_db/views/examination/examination_manifest_cache.py +26 -0
- endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
- endoreg_db/views/examination/get_finding_classifications.py +38 -0
- endoreg_db/views/examination/get_findings.py +39 -0
- endoreg_db/views/examination/get_instruments.py +19 -0
- endoreg_db/views/examination/get_interventions.py +14 -0
- endoreg_db/views/finding/__init__.py +9 -0
- endoreg_db/views/finding/finding.py +116 -0
- endoreg_db/views/finding/get_classifications.py +14 -0
- endoreg_db/views/finding/get_interventions.py +17 -0
- endoreg_db/views/finding_classification/__init__.py +13 -0
- endoreg_db/views/finding_classification/base.py +0 -0
- endoreg_db/views/finding_classification/finding_classification.py +41 -0
- endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
- endoreg_db/views/media/__init__.py +32 -0
- endoreg_db/views/media/pdf_media.py +411 -0
- endoreg_db/views/media/sensitive_metadata.py +372 -0
- endoreg_db/views/media/video_media.py +275 -0
- endoreg_db/views/meta/__init__.py +7 -0
- endoreg_db/views/meta/sensitive_meta_list.py +102 -0
- endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
- endoreg_db/views/misc/__init__.py +29 -0
- endoreg_db/views/misc/center.py +14 -0
- endoreg_db/views/misc/csrf.py +8 -0
- endoreg_db/views/misc/gender.py +15 -0
- endoreg_db/views/misc/stats.py +255 -0
- endoreg_db/views/misc/upload_views.py +241 -0
- endoreg_db/views/patient/__init__.py +3 -0
- endoreg_db/views/patient/patient.py +253 -0
- endoreg_db/views/patient_examination/__init__.py +11 -0
- endoreg_db/views/patient_examination/patient_examination.py +141 -0
- endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
- endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
- endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
- endoreg_db/views/patient_examination/video.py +228 -0
- endoreg_db/views/patient_finding/__init__.py +7 -0
- endoreg_db/views/patient_finding/base.py +0 -0
- endoreg_db/views/patient_finding/patient_finding.py +71 -0
- endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
- endoreg_db/views/patient_finding_classification/__init__.py +5 -0
- endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
- endoreg_db/views/report/__init__.py +7 -0
- endoreg_db/views/report/reimport.py +177 -0
- endoreg_db/views/report/report_stream.py +191 -0
- endoreg_db/views/requirement/__init__.py +11 -0
- endoreg_db/views/requirement/evaluate.py +278 -0
- endoreg_db/views/requirement/lookup.py +380 -0
- endoreg_db/views/requirement/lookup_store.py +183 -0
- endoreg_db/views/requirement/requirement_utils.py +87 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +266 -0
- endoreg_db/views/video/__init__.py +49 -0
- endoreg_db/views/video/ai/__init__.py +8 -0
- endoreg_db/views/video/ai/label.py +159 -0
- endoreg_db/views/video/correction.py +529 -0
- endoreg_db/views/video/reimport.py +230 -0
- endoreg_db/views/video/segments_crud.py +709 -0
- endoreg_db/views/video/video_apply_mask.py +49 -0
- endoreg_db/views/video/video_correction.py +22 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_metadata.py +101 -0
- endoreg_db/views/video/video_processing_history.py +25 -0
- endoreg_db/views/video/video_remove_frames.py +49 -0
- endoreg_db/views/video/video_stream.py +334 -0
- endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
- endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
- endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
- endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
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"""
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Utility-Funktionen für Frame-Anonymisierung
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Diese Datei enthält Hilfsfunktionen für die Frame-Anonymisierung,
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einschließlich Bildverarbeitung, Pfad-Management und Sicherheitsfunktionen.
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"""
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import hashlib
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import secrets
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from pathlib import Path
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from typing import Optional, Dict, List
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from datetime import datetime, timedelta
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import logging
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from django.conf import settings
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from django.core.exceptions import ValidationError
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from django.utils import timezone
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logger = logging.getLogger(__name__)
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# Unterstützte Ausgabeformate
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SUPPORTED_OUTPUT_FORMATS = ["jpg", "jpeg", "png", "webp"]
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# Anonymisierungsgrade
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ANONYMIZATION_LEVELS = ["minimal", "faces", "full"]
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# Maximale Dateigröße für Frames (in MB)
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MAX_FRAME_SIZE_MB = 50
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def validate_anonymization_request(
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video_id: int, segment_ids: List[int], anonymization_level: str, output_format: str
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) -> Dict:
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"""
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Validiert eine Frame-Anonymisierungsanfrage.
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Args:
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video_id: Video-ID
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segment_ids: Liste der Segment-IDs
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anonymization_level: Anonymisierungsgrad
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output_format: Ausgabeformat
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Returns:
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Dict mit Validierungsergebnis
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Raises:
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ValidationError: Bei ungültigen Parametern
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"""
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errors = []
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# Anonymisierungsgrad validieren
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if anonymization_level not in ANONYMIZATION_LEVELS:
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errors.append(
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f"Invalid anonymization level: {anonymization_level}. "
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f"Supported levels: {', '.join(ANONYMIZATION_LEVELS)}"
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)
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# Ausgabeformat validieren
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if output_format.lower() not in SUPPORTED_OUTPUT_FORMATS:
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errors.append(
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f"Invalid output format: {output_format}. "
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f"Supported formats: {', '.join(SUPPORTED_OUTPUT_FORMATS)}"
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)
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# Segment-IDs validieren
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if not segment_ids or len(segment_ids) == 0:
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errors.append("At least one segment ID must be provided")
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if len(segment_ids) > 100: # Reasonable limit
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errors.append("Too many segments requested (max 100)")
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# Video-ID validieren
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if video_id <= 0:
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errors.append("Invalid video ID")
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if errors:
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raise ValidationError(errors)
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return {
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"valid": True,
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"normalized_format": output_format.lower(),
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"segment_count": len(segment_ids),
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}
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def generate_secure_token(length: int = 32) -> str:
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"""
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Generiert einen sicheren Token für Downloads.
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Args:
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length: Token-Länge
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Returns:
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Sicherer Token
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"""
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return secrets.token_urlsafe(length)
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def create_secure_download_url(frame_id: int, expiry_hours: int = 24) -> Dict:
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"""
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Erstellt eine sichere Download-URL für einen anonymisierten Frame.
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Args:
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frame_id: Frame-ID
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expiry_hours: Gültigkeitsdauer in Stunden
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Returns:
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Dict mit URL und Token-Informationen
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"""
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token = generate_secure_token()
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expiry_time = timezone.now() + timedelta(hours=expiry_hours)
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# Token hashen für Datenbank-Speicherung
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token_hash = hashlib.sha256(token.encode()).hexdigest()
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return {
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"token": token,
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"token_hash": token_hash,
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"expires_at": expiry_time,
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"frame_id": frame_id,
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}
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def validate_secure_token(token: str, frame_id: int) -> bool:
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"""
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Validiert einen sicheren Download-Token.
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Args:
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token: Download-Token
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frame_id: Frame-ID
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Returns:
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True wenn Token gültig ist
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"""
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try:
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from endoreg_db.models import AnonymousFrame
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# Token hashen
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token_hash = hashlib.sha256(token.encode()).hexdigest()
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# Frame mit Token finden
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frame = AnonymousFrame.objects.filter(
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id=frame_id,
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download_token_hash=token_hash,
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download_expires_at__gt=timezone.now(),
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).first()
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return frame is not None
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except Exception as e:
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logger.error(f"Token validation error: {str(e)}")
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return False
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def get_frame_file_info(frame_path: str) -> Optional[Dict]:
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"""
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Holt Dateiinformationen für einen Frame.
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Args:
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frame_path: Pfad zum Frame
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Returns:
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Dict mit Dateiinformationen oder None
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"""
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try:
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path = Path(frame_path)
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if not path.exists():
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return None
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stat = path.stat()
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return {
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"filename": path.name,
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"size_bytes": stat.st_size,
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"size_mb": round(stat.st_size / (1024 * 1024), 2),
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"created_at": datetime.fromtimestamp(stat.st_ctime),
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"modified_at": datetime.fromtimestamp(stat.st_mtime),
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"extension": path.suffix.lower(),
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"exists": True,
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}
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except Exception as e:
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logger.error(f"Error getting file info for {frame_path}: {str(e)}")
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return None
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def calculate_anonymization_progress(
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total_frames: int, processed_frames: int, failed_frames: int
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) -> Dict:
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"""
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Berechnet den Fortschritt der Anonymisierung.
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Args:
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total_frames: Gesamtzahl der Frames
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processed_frames: Anzahl verarbeiteter Frames
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failed_frames: Anzahl fehlgeschlagener Frames
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Returns:
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Dict mit Fortschrittsinformationen
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"""
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if total_frames == 0:
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return {
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"progress_percent": 0,
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"completed_frames": 0,
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"remaining_frames": 0,
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"success_rate": 0,
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"status": "pending",
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}
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completed_frames = processed_frames + failed_frames
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progress_percent = (completed_frames / total_frames) * 100
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success_rate = (
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(processed_frames / completed_frames * 100) if completed_frames > 0 else 0
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)
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# Status bestimmen
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if completed_frames == 0:
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status = "pending"
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elif completed_frames < total_frames:
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status = "processing"
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elif failed_frames == total_frames:
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status = "failed"
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else:
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status = "completed"
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return {
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"progress_percent": round(progress_percent, 1),
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"completed_frames": completed_frames,
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"remaining_frames": total_frames - completed_frames,
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"success_rate": round(success_rate, 1),
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"status": status,
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"total_frames": total_frames,
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"processed_frames": processed_frames,
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"failed_frames": failed_frames,
|
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}
|
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237
|
+
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|
+
|
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|
+
def estimate_processing_time(total_frames: int, anonymization_level: str) -> Dict:
|
|
240
|
+
"""
|
|
241
|
+
Schätzt die Verarbeitungszeit für die Anonymisierung.
|
|
242
|
+
|
|
243
|
+
Args:
|
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244
|
+
total_frames: Anzahl der zu verarbeitenden Frames
|
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245
|
+
anonymization_level: Anonymisierungsgrad
|
|
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|
+
|
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247
|
+
Returns:
|
|
248
|
+
Dict mit Zeitschätzungen
|
|
249
|
+
"""
|
|
250
|
+
# Geschätzte Verarbeitungszeit pro Frame (in Sekunden)
|
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|
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time_per_frame = {"minimal": 0.5, "faces": 1.0, "full": 0.8}
|
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+
|
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253
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base_time = time_per_frame.get(anonymization_level, 1.0)
|
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254
|
+
estimated_seconds = total_frames * base_time
|
|
255
|
+
|
|
256
|
+
# Overhead für Setup und Cleanup
|
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|
+
overhead_seconds = min(30, total_frames * 0.1)
|
|
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|
+
total_seconds = estimated_seconds + overhead_seconds
|
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|
+
|
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260
|
+
return {
|
|
261
|
+
"estimated_seconds": int(total_seconds),
|
|
262
|
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"estimated_minutes": round(total_seconds / 60, 1),
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263
|
+
"frames_per_second": round(1 / base_time, 1),
|
|
264
|
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"anonymization_level": anonymization_level,
|
|
265
|
+
}
|
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266
|
+
|
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267
|
+
|
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|
+
def cleanup_expired_tokens():
|
|
269
|
+
"""
|
|
270
|
+
Bereinigt abgelaufene Download-Tokens.
|
|
271
|
+
|
|
272
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+
Returns:
|
|
273
|
+
Anzahl bereinigter Tokens
|
|
274
|
+
"""
|
|
275
|
+
try:
|
|
276
|
+
from endoreg_db.models import AnonymousFrame
|
|
277
|
+
|
|
278
|
+
# Frames mit abgelaufenen Tokens finden
|
|
279
|
+
expired_frames = AnonymousFrame.objects.filter(
|
|
280
|
+
download_expires_at__lt=timezone.now(), download_token_hash__isnull=False
|
|
281
|
+
)
|
|
282
|
+
|
|
283
|
+
count = expired_frames.count()
|
|
284
|
+
expired_frames.update(download_token_hash=None, download_expires_at=None)
|
|
285
|
+
|
|
286
|
+
logger.info(f"Cleaned up {count} expired download tokens")
|
|
287
|
+
return count
|
|
288
|
+
|
|
289
|
+
except Exception as e:
|
|
290
|
+
logger.error(f"Error cleaning up expired tokens: {str(e)}")
|
|
291
|
+
return 0
|
|
292
|
+
|
|
293
|
+
|
|
294
|
+
def get_anonymization_statistics(video_id: Optional[int] = None) -> Dict:
|
|
295
|
+
"""
|
|
296
|
+
Holt Statistiken zur Frame-Anonymisierung.
|
|
297
|
+
|
|
298
|
+
Args:
|
|
299
|
+
video_id: Optional - Video-ID für spezifische Statistiken
|
|
300
|
+
|
|
301
|
+
Returns:
|
|
302
|
+
Dict mit Statistiken
|
|
303
|
+
"""
|
|
304
|
+
try:
|
|
305
|
+
from endoreg_db.models import FrameAnonymizationRequest, AnonymousFrame
|
|
306
|
+
from django.db.models import Count, Q
|
|
307
|
+
|
|
308
|
+
# Basis-Queryset
|
|
309
|
+
requests_qs = FrameAnonymizationRequest.objects.all()
|
|
310
|
+
frames_qs = AnonymousFrame.objects.all()
|
|
311
|
+
|
|
312
|
+
if video_id:
|
|
313
|
+
requests_qs = requests_qs.filter(video_file_id=video_id)
|
|
314
|
+
frames_qs = frames_qs.filter(video_file_id=video_id)
|
|
315
|
+
|
|
316
|
+
# Request-Statistiken
|
|
317
|
+
request_stats = requests_qs.aggregate(
|
|
318
|
+
total_requests=Count("id"),
|
|
319
|
+
pending_requests=Count("id", filter=Q(status="pending")),
|
|
320
|
+
processing_requests=Count("id", filter=Q(status="processing")),
|
|
321
|
+
completed_requests=Count("id", filter=Q(status="completed")),
|
|
322
|
+
failed_requests=Count("id", filter=Q(status="failed")),
|
|
323
|
+
)
|
|
324
|
+
|
|
325
|
+
# Frame-Statistiken
|
|
326
|
+
frame_stats = frames_qs.aggregate(
|
|
327
|
+
total_frames=Count("id"),
|
|
328
|
+
faces_anonymized=Count("id", filter=Q(anonymization_level="faces")),
|
|
329
|
+
full_anonymized=Count("id", filter=Q(anonymization_level="full")),
|
|
330
|
+
minimal_anonymized=Count("id", filter=Q(anonymization_level="minimal")),
|
|
331
|
+
)
|
|
332
|
+
|
|
333
|
+
# Disk-Space Statistiken
|
|
334
|
+
total_size = 0
|
|
335
|
+
for frame in frames_qs.values_list("anonymized_frame_path", flat=True):
|
|
336
|
+
file_info = get_frame_file_info(frame)
|
|
337
|
+
if file_info:
|
|
338
|
+
total_size += file_info["size_bytes"]
|
|
339
|
+
|
|
340
|
+
return {
|
|
341
|
+
"requests": request_stats,
|
|
342
|
+
"frames": frame_stats,
|
|
343
|
+
"storage": {
|
|
344
|
+
"total_size_bytes": total_size,
|
|
345
|
+
"total_size_mb": round(total_size / (1024 * 1024), 2),
|
|
346
|
+
},
|
|
347
|
+
"video_id": video_id,
|
|
348
|
+
}
|
|
349
|
+
|
|
350
|
+
except Exception as e:
|
|
351
|
+
logger.error(f"Error getting anonymization statistics: {str(e)}")
|
|
352
|
+
return {"requests": {}, "frames": {}, "storage": {}, "error": str(e)}
|
|
353
|
+
|
|
354
|
+
|
|
355
|
+
def validate_frame_path(frame_path: str) -> bool:
|
|
356
|
+
"""
|
|
357
|
+
Validiert einen Frame-Pfad auf Sicherheit.
|
|
358
|
+
|
|
359
|
+
Args:
|
|
360
|
+
frame_path: Zu validierender Pfad
|
|
361
|
+
|
|
362
|
+
Returns:
|
|
363
|
+
True wenn Pfad sicher ist
|
|
364
|
+
"""
|
|
365
|
+
try:
|
|
366
|
+
path = Path(frame_path).resolve()
|
|
367
|
+
|
|
368
|
+
# Basis-Verzeichnisse definieren
|
|
369
|
+
allowed_dirs = [
|
|
370
|
+
Path(settings.MEDIA_ROOT).resolve(),
|
|
371
|
+
Path(getattr(settings, "FRAME_STORAGE_ROOT", "/tmp")).resolve(),
|
|
372
|
+
]
|
|
373
|
+
|
|
374
|
+
# Prüfen ob Pfad in erlaubten Verzeichnissen liegt
|
|
375
|
+
for allowed_dir in allowed_dirs:
|
|
376
|
+
try:
|
|
377
|
+
path.relative_to(allowed_dir)
|
|
378
|
+
return True
|
|
379
|
+
except ValueError:
|
|
380
|
+
continue
|
|
381
|
+
|
|
382
|
+
logger.warning(f"Frame path outside allowed directories: {frame_path}")
|
|
383
|
+
return False
|
|
384
|
+
|
|
385
|
+
except Exception as e:
|
|
386
|
+
logger.error(f"Error validating frame path {frame_path}: {str(e)}")
|
|
387
|
+
return False
|
|
388
|
+
|
|
389
|
+
|
|
390
|
+
def get_video_frame_count(video_id: int) -> int:
|
|
391
|
+
"""
|
|
392
|
+
Ermittelt die Anzahl verfügbarer Frames für ein Video.
|
|
393
|
+
|
|
394
|
+
Args:
|
|
395
|
+
video_id: Video-ID
|
|
396
|
+
|
|
397
|
+
Returns:
|
|
398
|
+
Anzahl der Frames
|
|
399
|
+
"""
|
|
400
|
+
try:
|
|
401
|
+
from endoreg_db.models import VideoFile
|
|
402
|
+
|
|
403
|
+
video = VideoFile.objects.get(id=video_id)
|
|
404
|
+
|
|
405
|
+
if not video.frame_dir:
|
|
406
|
+
return 0
|
|
407
|
+
|
|
408
|
+
frame_dir = Path(video.frame_dir)
|
|
409
|
+
if not frame_dir.exists():
|
|
410
|
+
return 0
|
|
411
|
+
|
|
412
|
+
# Zähle alle Bilddateien
|
|
413
|
+
frame_count = 0
|
|
414
|
+
for ext in ["*.jpg", "*.jpeg", "*.png"]:
|
|
415
|
+
frame_count += len(list(frame_dir.glob(ext)))
|
|
416
|
+
|
|
417
|
+
return frame_count
|
|
418
|
+
|
|
419
|
+
except Exception as e:
|
|
420
|
+
logger.error(f"Error counting frames for video {video_id}: {str(e)}")
|
|
421
|
+
return 0
|
|
422
|
+
|
|
423
|
+
|
|
424
|
+
def format_file_size(size_bytes: int) -> str:
|
|
425
|
+
"""
|
|
426
|
+
Formatiert Dateigröße in lesbares Format.
|
|
427
|
+
|
|
428
|
+
Args:
|
|
429
|
+
size_bytes: Größe in Bytes
|
|
430
|
+
|
|
431
|
+
Returns:
|
|
432
|
+
Formatierte Größe
|
|
433
|
+
"""
|
|
434
|
+
for unit in ["B", "KB", "MB", "GB"]:
|
|
435
|
+
if size_bytes < 1024.0:
|
|
436
|
+
return f"{size_bytes:.1f} {unit}"
|
|
437
|
+
size_bytes /= 1024.0
|
|
438
|
+
return f"{size_bytes:.1f} TB"
|
|
439
|
+
|
|
440
|
+
|
|
441
|
+
def log_anonymization_activity(
|
|
442
|
+
activity_type: str, details: Dict, user_id: Optional[int] = None
|
|
443
|
+
):
|
|
444
|
+
"""
|
|
445
|
+
Protokolliert Anonymisierungsaktivitäten für Audit-Zwecke.
|
|
446
|
+
|
|
447
|
+
Args:
|
|
448
|
+
activity_type: Art der Aktivität
|
|
449
|
+
details: Details der Aktivität
|
|
450
|
+
user_id: Optional - Benutzer-ID
|
|
451
|
+
"""
|
|
452
|
+
try:
|
|
453
|
+
log_entry = {
|
|
454
|
+
"timestamp": timezone.now().isoformat(),
|
|
455
|
+
"activity_type": activity_type,
|
|
456
|
+
"details": details,
|
|
457
|
+
"user_id": user_id,
|
|
458
|
+
}
|
|
459
|
+
|
|
460
|
+
logger.info(f"Anonymization activity: {activity_type}", extra=log_entry)
|
|
461
|
+
|
|
462
|
+
except Exception as e:
|
|
463
|
+
logger.error(f"Error logging anonymization activity: {str(e)}")
|
|
@@ -0,0 +1,138 @@
|
|
|
1
|
+
import hashlib
|
|
2
|
+
from pathlib import Path
|
|
3
|
+
from datetime import datetime, date
|
|
4
|
+
from endoreg_db.utils.file_operations import sha256_file
|
|
5
|
+
import os
|
|
6
|
+
|
|
7
|
+
SALT = os.getenv("DJANGO_SALT", "default_salt")
|
|
8
|
+
DJANGO_NAME_SALT = os.environ.get("DJANGO_SALT", "default_salt")
|
|
9
|
+
|
|
10
|
+
|
|
11
|
+
def get_video_hash(video_path):
|
|
12
|
+
"""
|
|
13
|
+
Get the hash of a video file.
|
|
14
|
+
"""
|
|
15
|
+
video_hash = sha256_file(video_path)
|
|
16
|
+
|
|
17
|
+
return video_hash
|
|
18
|
+
|
|
19
|
+
|
|
20
|
+
def get_pdf_hash(pdf_path: Path):
|
|
21
|
+
"""
|
|
22
|
+
Get the hash of a pdf file.
|
|
23
|
+
"""
|
|
24
|
+
|
|
25
|
+
pdf_hash = sha256_file(pdf_path)
|
|
26
|
+
|
|
27
|
+
return pdf_hash
|
|
28
|
+
|
|
29
|
+
|
|
30
|
+
def _get_date_hash_string(date_obj: date) -> str:
|
|
31
|
+
# if date is datetime object, convert to date
|
|
32
|
+
if isinstance(date_obj, datetime):
|
|
33
|
+
# warnings.warn("Date is a datetime object. Converting to date object.")
|
|
34
|
+
date_obj = date_obj.date()
|
|
35
|
+
elif isinstance(date_obj, str):
|
|
36
|
+
# warnings.warn(f"Date is a string ({date_obj}). Converting to date object.")
|
|
37
|
+
date_obj = datetime.strptime(date_obj, "%Y-%m-%d").date()
|
|
38
|
+
|
|
39
|
+
assert isinstance(date_obj, date), "Date must be a date object"
|
|
40
|
+
# if date is 1900-01-01, make it an empty string
|
|
41
|
+
if date_obj == date(1900, 1, 1):
|
|
42
|
+
date_str = ""
|
|
43
|
+
else:
|
|
44
|
+
date_str = date_obj.strftime("%Y-%m-%d")
|
|
45
|
+
|
|
46
|
+
return date_str
|
|
47
|
+
|
|
48
|
+
|
|
49
|
+
def get_hash_string(
|
|
50
|
+
first_name: str = "",
|
|
51
|
+
last_name: str = "",
|
|
52
|
+
dob: date = date(1900, 1, 1),
|
|
53
|
+
center_name: str = "",
|
|
54
|
+
examination_date: date = date(1900, 1, 1),
|
|
55
|
+
endoscope_sn: str = "",
|
|
56
|
+
salt: str = "",
|
|
57
|
+
):
|
|
58
|
+
"""
|
|
59
|
+
Get the string to be hashed for a patient's first name, last name, date of birth, examination date, and endoscope serial number.
|
|
60
|
+
"""
|
|
61
|
+
if not salt:
|
|
62
|
+
salt = SALT
|
|
63
|
+
|
|
64
|
+
examination_date_str = _get_date_hash_string(examination_date)
|
|
65
|
+
dob_str = _get_date_hash_string(dob)
|
|
66
|
+
|
|
67
|
+
# Concatenate the patient's first name, last name, date of birth, examination date, endoscope serial number, and salt:
|
|
68
|
+
hash_str = f"{first_name}{last_name}{dob_str}{center_name}{dob_str}{examination_date_str}{endoscope_sn}{salt}"
|
|
69
|
+
return hash_str
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
def get_patient_hash(
|
|
73
|
+
first_name: str, last_name: str, dob: date, center: str, salt: str = ""
|
|
74
|
+
):
|
|
75
|
+
"""
|
|
76
|
+
Get the hash of a patient's first name, last name, and date of birth.
|
|
77
|
+
"""
|
|
78
|
+
# Concatenate the patient's first name, last name, date of birth, and salt:
|
|
79
|
+
hash_str = get_hash_string(
|
|
80
|
+
first_name=first_name,
|
|
81
|
+
last_name=last_name,
|
|
82
|
+
dob=dob,
|
|
83
|
+
center_name=center,
|
|
84
|
+
salt=salt,
|
|
85
|
+
)
|
|
86
|
+
# Create a hash object using SHA-256 algorithm
|
|
87
|
+
hash_object = hashlib.sha256(hash_str.encode())
|
|
88
|
+
# Get the hexadecimal representation of the hash
|
|
89
|
+
patient_hash = hash_object.hexdigest()
|
|
90
|
+
|
|
91
|
+
return patient_hash
|
|
92
|
+
|
|
93
|
+
|
|
94
|
+
def get_patient_examination_hash(
|
|
95
|
+
first_name: str,
|
|
96
|
+
last_name: str,
|
|
97
|
+
dob: date,
|
|
98
|
+
center: str,
|
|
99
|
+
examination_date: date,
|
|
100
|
+
salt: str = "",
|
|
101
|
+
):
|
|
102
|
+
"""
|
|
103
|
+
Get the hash of a patient's first name, last name, date of birth, and examination date.
|
|
104
|
+
"""
|
|
105
|
+
# Concatenate the patient's first name, last name, date of birth, examination date, and salt:
|
|
106
|
+
hash_str = get_hash_string(
|
|
107
|
+
first_name=first_name,
|
|
108
|
+
last_name=last_name,
|
|
109
|
+
center_name=center,
|
|
110
|
+
dob=dob,
|
|
111
|
+
examination_date=examination_date,
|
|
112
|
+
salt=salt,
|
|
113
|
+
)
|
|
114
|
+
# Create a hash object using SHA-256 algorithm
|
|
115
|
+
hash_object = hashlib.sha256(hash_str.encode())
|
|
116
|
+
# Get the hexadecimal representation of the hash
|
|
117
|
+
patient_examination_hash = hash_object.hexdigest()
|
|
118
|
+
|
|
119
|
+
return patient_examination_hash
|
|
120
|
+
|
|
121
|
+
|
|
122
|
+
def get_examiner_hash(first_name, last_name, center_name, salt):
|
|
123
|
+
"""
|
|
124
|
+
Get the hash of an examiner's first name, last name, and center name.
|
|
125
|
+
"""
|
|
126
|
+
# Concatenate the examiner's first name, last name, center name, and salt:
|
|
127
|
+
hash_str = get_hash_string(
|
|
128
|
+
first_name=first_name,
|
|
129
|
+
last_name=last_name,
|
|
130
|
+
center_name=center_name,
|
|
131
|
+
salt=salt,
|
|
132
|
+
)
|
|
133
|
+
# Create a hash object using SHA-256 algorithm
|
|
134
|
+
hash_object = hashlib.sha256(hash_str.encode())
|
|
135
|
+
# Get the hexadecimal representation of the hash
|
|
136
|
+
examiner_hash = hash_object.hexdigest()
|
|
137
|
+
|
|
138
|
+
return examiner_hash
|
|
File without changes
|