endoreg-db 0.8.9.32__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/_version.py +34 -0
  3. endoreg_db/admin.py +97 -0
  4. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  5. endoreg_db/api/views/finding_descriptions.py +0 -0
  6. endoreg_db/api_urls.py +4 -0
  7. endoreg_db/apps.py +17 -0
  8. endoreg_db/assets/dummy_model.ckpt +1 -0
  9. endoreg_db/authz/auth.py +78 -0
  10. endoreg_db/authz/backends.py +168 -0
  11. endoreg_db/authz/management/commands/list_routes.py +20 -0
  12. endoreg_db/authz/middleware.py +84 -0
  13. endoreg_db/authz/permissions.py +138 -0
  14. endoreg_db/authz/policy.py +224 -0
  15. endoreg_db/authz/settings.py +64 -0
  16. endoreg_db/authz/views_auth.py +70 -0
  17. endoreg_db/codemods/readme.md +88 -0
  18. endoreg_db/codemods/rename_datetime_fields.py +99 -0
  19. endoreg_db/config/__init__.py +0 -0
  20. endoreg_db/config/env.py +106 -0
  21. endoreg_db/config/settings/__init__.py +6 -0
  22. endoreg_db/config/settings/base.py +148 -0
  23. endoreg_db/config/settings/case_gen.py +32 -0
  24. endoreg_db/config/settings/dev.py +108 -0
  25. endoreg_db/config/settings/keycloak.py +177 -0
  26. endoreg_db/config/settings/prod.py +66 -0
  27. endoreg_db/config/settings/test.py +72 -0
  28. endoreg_db/data/__init__.py +135 -0
  29. endoreg_db/data/ai_model/data.yaml +7 -0
  30. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  31. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  32. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  33. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  34. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  35. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  36. endoreg_db/data/ai_model_type/data.yaml +7 -0
  37. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  38. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  39. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  40. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  41. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  42. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  43. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  44. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  45. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  46. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  47. endoreg_db/data/case_template/rule_value/.init +0 -0
  48. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  49. endoreg_db/data/case_template/template/base.yaml +8 -0
  50. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  51. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  52. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  53. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  54. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  55. endoreg_db/data/center/data.yaml +99 -0
  56. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  57. endoreg_db/data/center_shift/ukw.yaml +9 -0
  58. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  59. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  60. endoreg_db/data/db_summary.csv +58 -0
  61. endoreg_db/data/db_summary.xlsx +0 -0
  62. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  63. endoreg_db/data/disease/hepatology.yaml +5 -0
  64. endoreg_db/data/disease/misc.yaml +5 -0
  65. endoreg_db/data/disease/renal.yaml +5 -0
  66. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  67. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  68. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  69. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  70. endoreg_db/data/distribution/date/patient.yaml +7 -0
  71. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  72. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  73. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  74. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  75. endoreg_db/data/endoscope/data.yaml +93 -0
  76. endoreg_db/data/endoscope_type/data.yaml +11 -0
  77. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  78. endoreg_db/data/event/cardiology.yaml +15 -0
  79. endoreg_db/data/event/neurology.yaml +14 -0
  80. endoreg_db/data/event/surgery.yaml +13 -0
  81. endoreg_db/data/event/thrombembolism.yaml +20 -0
  82. endoreg_db/data/event_classification/data.yaml +4 -0
  83. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  84. endoreg_db/data/examination/examinations/data.yaml +172 -0
  85. endoreg_db/data/examination/time/data.yaml +48 -0
  86. endoreg_db/data/examination/time-type/data.yaml +5 -0
  87. endoreg_db/data/examination/type/data.yaml +17 -0
  88. endoreg_db/data/examination_indication/endoscopy.yaml +359 -0
  89. endoreg_db/data/examination_indication_classification/endoscopy.yaml +90 -0
  90. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +97 -0
  91. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  92. endoreg_db/data/finding/00_generic.yaml +35 -0
  93. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  94. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  95. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  96. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  97. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  98. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  99. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  100. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  101. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  102. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  103. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  104. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  105. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  106. endoreg_db/data/finding_classification_choice/00_generic.yaml +15 -0
  107. endoreg_db/data/finding_classification_choice/00_generic_baseline.yaml +23 -0
  108. endoreg_db/data/finding_classification_choice/00_generic_complication.yaml +15 -0
  109. endoreg_db/data/finding_classification_choice/00_generic_histology.yaml +21 -0
  110. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  111. endoreg_db/data/finding_classification_choice/02_colonoscopy_bowel_preparation.yaml +49 -0
  112. endoreg_db/data/finding_classification_choice/02_colonoscopy_generic.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/02_colonoscopy_histology.yaml +20 -0
  114. endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml +248 -0
  115. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  116. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  117. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml +75 -0
  118. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  119. endoreg_db/data/finding_classification_type/00_generic.yaml +53 -0
  120. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  121. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  122. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  123. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  124. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  125. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  126. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  127. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  128. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  129. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  130. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  131. endoreg_db/data/finding_type/data.yaml +39 -0
  132. endoreg_db/data/gender/data.yaml +42 -0
  133. endoreg_db/data/information_source/annotation.yaml +6 -0
  134. endoreg_db/data/information_source/data.yaml +30 -0
  135. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  136. endoreg_db/data/information_source/medication.yaml +6 -0
  137. endoreg_db/data/information_source/prediction.yaml +7 -0
  138. endoreg_db/data/information_source_type/data.yaml +8 -0
  139. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  140. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  141. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  142. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  143. endoreg_db/data/lab_value/hematology.yaml +184 -0
  144. endoreg_db/data/lab_value/hormones.yaml +59 -0
  145. endoreg_db/data/lab_value/lipids.yaml +53 -0
  146. endoreg_db/data/lab_value/misc.yaml +76 -0
  147. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  148. endoreg_db/data/log_type/data.yaml +57 -0
  149. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  150. endoreg_db/data/lx_client_type/base.yaml +30 -0
  151. endoreg_db/data/lx_permission/base.yaml +24 -0
  152. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  153. endoreg_db/data/material/material.yaml +91 -0
  154. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  155. endoreg_db/data/medication/tah.yaml +70 -0
  156. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  157. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  158. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  159. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  160. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  161. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  162. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  163. endoreg_db/data/names_first/first_names.yaml +54 -0
  164. endoreg_db/data/names_last/last_names.yaml +51 -0
  165. endoreg_db/data/network_device/data.yaml +59 -0
  166. endoreg_db/data/network_device_type/data.yaml +12 -0
  167. endoreg_db/data/organ/data.yaml +29 -0
  168. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  169. endoreg_db/data/pdf_type/data.yaml +46 -0
  170. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  171. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  172. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  173. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  174. endoreg_db/data/profession/data.yaml +70 -0
  175. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  176. endoreg_db/data/qualification/m2.yaml +39 -0
  177. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  178. endoreg_db/data/qualification/sonography.yaml +36 -0
  179. endoreg_db/data/qualification_type/base.yaml +29 -0
  180. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  181. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  182. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  183. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  184. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  185. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  186. endoreg_db/data/requirement/old/colonoscopy_baseline_austria.yaml +45 -0
  187. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  188. endoreg_db/data/requirement/old/disease_cardiovascular.yaml +79 -0
  189. endoreg_db/data/requirement/old/disease_classification_choice_cardiovascular.yaml +41 -0
  190. endoreg_db/data/requirement/old/disease_hepatology.yaml +12 -0
  191. endoreg_db/data/requirement/old/disease_misc.yaml +12 -0
  192. endoreg_db/data/requirement/old/disease_renal.yaml +96 -0
  193. endoreg_db/data/requirement/old/endoscopy_bleeding_risk.yaml +59 -0
  194. endoreg_db/data/requirement/old/event_cardiology.yaml +251 -0
  195. endoreg_db/data/requirement/old/event_requirements.yaml +145 -0
  196. endoreg_db/data/requirement/old/finding_colon_polyp.yaml +50 -0
  197. endoreg_db/data/requirement/old/gender.yaml +0 -0
  198. endoreg_db/data/requirement/old/lab_value.yaml +441 -0
  199. endoreg_db/data/requirement/old/medication.yaml +93 -0
  200. endoreg_db/data/requirement_operator/_old/age.yaml +13 -0
  201. endoreg_db/data/requirement_operator/_old/lab_operators.yaml +129 -0
  202. endoreg_db/data/requirement_operator/_old/model_operators.yaml +96 -0
  203. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  204. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +65 -0
  205. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  206. endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
  207. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  208. endoreg_db/data/requirement_set/_old_ +109 -0
  209. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  210. endoreg_db/data/requirement_set_type/data.yaml +41 -0
  211. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  212. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  213. endoreg_db/data/risk/bleeding.yaml +26 -0
  214. endoreg_db/data/risk/thrombosis.yaml +37 -0
  215. endoreg_db/data/risk_type/data.yaml +27 -0
  216. endoreg_db/data/setup_config.yaml +38 -0
  217. endoreg_db/data/shift/endoscopy.yaml +21 -0
  218. endoreg_db/data/shift/m2.yaml +0 -0
  219. endoreg_db/data/shift_type/base.yaml +35 -0
  220. endoreg_db/data/tag/requirement_set_tags.yaml +32 -0
  221. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  222. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  223. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  224. endoreg_db/data/unit/concentration.yaml +115 -0
  225. endoreg_db/data/unit/data.yaml +17 -0
  226. endoreg_db/data/unit/length.yaml +31 -0
  227. endoreg_db/data/unit/misc.yaml +20 -0
  228. endoreg_db/data/unit/rate.yaml +6 -0
  229. endoreg_db/data/unit/time.yaml +48 -0
  230. endoreg_db/data/unit/volume.yaml +35 -0
  231. endoreg_db/data/unit/weight.yaml +38 -0
  232. endoreg_db/data/waste/data.yaml +12 -0
  233. endoreg_db/exceptions.py +24 -0
  234. endoreg_db/export/frames/export.py +6 -0
  235. endoreg_db/export/frames/export_frames_with_labels.py +616 -0
  236. endoreg_db/factories/__init__.py +0 -0
  237. endoreg_db/forms/__init__.py +4 -0
  238. endoreg_db/forms/examination_form.py +12 -0
  239. endoreg_db/forms/patient_finding_intervention_form.py +40 -0
  240. endoreg_db/forms/patient_form.py +23 -0
  241. endoreg_db/forms/questionnaires/__init__.py +1 -0
  242. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  243. endoreg_db/forms/settings/__init__.py +11 -0
  244. endoreg_db/forms/unit.py +7 -0
  245. endoreg_db/helpers/__init__.py +0 -0
  246. endoreg_db/helpers/count_db.py +48 -0
  247. endoreg_db/helpers/data_loader.py +280 -0
  248. endoreg_db/helpers/default_objects.py +414 -0
  249. endoreg_db/helpers/download_segmentation_model.py +32 -0
  250. endoreg_db/helpers/interact.py +1 -0
  251. endoreg_db/helpers/test_video_helper.py +127 -0
  252. endoreg_db/import_files/__init__.py +27 -0
  253. endoreg_db/import_files/context/__init__.py +7 -0
  254. endoreg_db/import_files/context/default_sensitive_meta.py +83 -0
  255. endoreg_db/import_files/context/ensure_center.py +17 -0
  256. endoreg_db/import_files/context/file_lock.py +66 -0
  257. endoreg_db/import_files/context/import_context.py +42 -0
  258. endoreg_db/import_files/context/validate_directories.py +57 -0
  259. endoreg_db/import_files/file_storage/__init__.py +15 -0
  260. endoreg_db/import_files/file_storage/create_report_file.py +99 -0
  261. endoreg_db/import_files/file_storage/create_video_file.py +104 -0
  262. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +42 -0
  263. endoreg_db/import_files/file_storage/state_management.py +463 -0
  264. endoreg_db/import_files/file_storage/storage.py +42 -0
  265. endoreg_db/import_files/import_service.md +26 -0
  266. endoreg_db/import_files/processing/__init__.py +11 -0
  267. endoreg_db/import_files/processing/report_processing/report_anonymization.py +99 -0
  268. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  269. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  270. endoreg_db/import_files/pseudonymization/__init__.py +0 -0
  271. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  272. endoreg_db/import_files/pseudonymization/k_anonymity.py +181 -0
  273. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +139 -0
  274. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  275. endoreg_db/import_files/report_import_service.py +147 -0
  276. endoreg_db/import_files/video_import_service.py +154 -0
  277. endoreg_db/logger_conf.py +156 -0
  278. endoreg_db/management/__init__.py +1 -0
  279. endoreg_db/management/commands/__init__.py +1 -0
  280. endoreg_db/management/commands/anonymize_video.py +0 -0
  281. endoreg_db/management/commands/check_auth.py +132 -0
  282. endoreg_db/management/commands/create_model_meta_from_huggingface.py +177 -0
  283. endoreg_db/management/commands/create_multilabel_model_meta.py +419 -0
  284. endoreg_db/management/commands/export_frame_annot.py +196 -0
  285. endoreg_db/management/commands/fix_missing_patient_data.py +206 -0
  286. endoreg_db/management/commands/fix_video_paths.py +186 -0
  287. endoreg_db/management/commands/import_report.py +361 -0
  288. endoreg_db/management/commands/list_routes.py +20 -0
  289. endoreg_db/management/commands/load_ai_model_data.py +83 -0
  290. endoreg_db/management/commands/load_ai_model_label_data.py +60 -0
  291. endoreg_db/management/commands/load_base_db_data.py +63 -0
  292. endoreg_db/management/commands/load_center_data.py +68 -0
  293. endoreg_db/management/commands/load_contraindication_data.py +39 -0
  294. endoreg_db/management/commands/load_disease_classification_choices_data.py +38 -0
  295. endoreg_db/management/commands/load_disease_classification_data.py +38 -0
  296. endoreg_db/management/commands/load_disease_data.py +59 -0
  297. endoreg_db/management/commands/load_distribution_data.py +63 -0
  298. endoreg_db/management/commands/load_endoscope_data.py +58 -0
  299. endoreg_db/management/commands/load_event_data.py +39 -0
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  604. endoreg_db/serializers/video/__init__.py +7 -0
  605. endoreg_db/serializers/video/video_file.py +283 -0
  606. endoreg_db/serializers/video/video_file_brief.py +14 -0
  607. endoreg_db/serializers/video/video_file_detail.py +96 -0
  608. endoreg_db/serializers/video/video_file_list.py +100 -0
  609. endoreg_db/serializers/video/video_processing_history.py +172 -0
  610. endoreg_db/serializers/video_examination.py +198 -0
  611. endoreg_db/services/__init__.py +5 -0
  612. endoreg_db/services/anonymization.py +274 -0
  613. endoreg_db/services/examination_evaluation.py +172 -0
  614. endoreg_db/services/finding_description_service.py +0 -0
  615. endoreg_db/services/lookup_service.py +424 -0
  616. endoreg_db/services/lookup_store.py +266 -0
  617. endoreg_db/services/model_meta_from_hf.py +76 -0
  618. endoreg_db/services/pdf_import.py +0 -0
  619. endoreg_db/services/polling_coordinator.py +319 -0
  620. endoreg_db/services/pseudonym_service.py +94 -0
  621. endoreg_db/services/report_import.py +13 -0
  622. endoreg_db/services/segment_sync.py +171 -0
  623. endoreg_db/services/video_import.py +9 -0
  624. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  625. endoreg_db/templates/admin/start_examination.html +12 -0
  626. endoreg_db/templates/timeline.html +176 -0
  627. endoreg_db/urls/__init__.py +56 -0
  628. endoreg_db/urls/ai.py +14 -0
  629. endoreg_db/urls/anonymization.py +78 -0
  630. endoreg_db/urls/auth.py +16 -0
  631. endoreg_db/urls/classification.py +34 -0
  632. endoreg_db/urls/examination.py +63 -0
  633. endoreg_db/urls/media.py +251 -0
  634. endoreg_db/urls/patient.py +23 -0
  635. endoreg_db/urls/requirements.py +15 -0
  636. endoreg_db/urls/root_urls.py +28 -0
  637. endoreg_db/urls/stats.py +54 -0
  638. endoreg_db/urls/upload.py +12 -0
  639. endoreg_db/urls.py +9 -0
  640. endoreg_db/utils/__init__.py +97 -0
  641. endoreg_db/utils/ai/__init__.py +9 -0
  642. endoreg_db/utils/ai/data_loader_for_model_input.py +262 -0
  643. endoreg_db/utils/ai/data_loader_for_model_training.py +262 -0
  644. endoreg_db/utils/ai/get.py +6 -0
  645. endoreg_db/utils/ai/inference_dataset.py +51 -0
  646. endoreg_db/utils/ai/model_training/config.py +117 -0
  647. endoreg_db/utils/ai/model_training/dataset.py +74 -0
  648. endoreg_db/utils/ai/model_training/losses.py +68 -0
  649. endoreg_db/utils/ai/model_training/metrics.py +78 -0
  650. endoreg_db/utils/ai/model_training/model_backbones.py +155 -0
  651. endoreg_db/utils/ai/model_training/model_gastronet_resnet.py +118 -0
  652. endoreg_db/utils/ai/model_training/trainer_gastronet_multilabel.py +771 -0
  653. endoreg_db/utils/ai/multilabel_classification_net.py +270 -0
  654. endoreg_db/utils/ai/postprocess.py +63 -0
  655. endoreg_db/utils/ai/predict.py +293 -0
  656. endoreg_db/utils/ai/preprocess.py +76 -0
  657. endoreg_db/utils/calc_duration_seconds.py +24 -0
  658. endoreg_db/utils/case_generator/__init__.py +3 -0
  659. endoreg_db/utils/case_generator/lab_sample_factory.py +32 -0
  660. endoreg_db/utils/check_video_files.py +175 -0
  661. endoreg_db/utils/cropping.py +30 -0
  662. endoreg_db/utils/dataloader.py +285 -0
  663. endoreg_db/utils/dates.py +59 -0
  664. endoreg_db/utils/defaults/set_default_center.py +33 -0
  665. endoreg_db/utils/env.py +37 -0
  666. endoreg_db/utils/extract_specific_frames.py +87 -0
  667. endoreg_db/utils/file_operations.py +70 -0
  668. endoreg_db/utils/fix_video_path_direct.py +157 -0
  669. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  670. endoreg_db/utils/hashs.py +138 -0
  671. endoreg_db/utils/links/__init__.py +0 -0
  672. endoreg_db/utils/links/requirement_link.py +237 -0
  673. endoreg_db/utils/mime_types.py +0 -0
  674. endoreg_db/utils/names.py +82 -0
  675. endoreg_db/utils/ocr.py +195 -0
  676. endoreg_db/utils/operation_log.py +87 -0
  677. endoreg_db/utils/parse_and_generate_yaml.py +45 -0
  678. endoreg_db/utils/paths.py +159 -0
  679. endoreg_db/utils/permissions.py +160 -0
  680. endoreg_db/utils/pipelines/Readme.md +235 -0
  681. endoreg_db/utils/pipelines/__init__.py +0 -0
  682. endoreg_db/utils/pipelines/process_video_dir.py +144 -0
  683. endoreg_db/utils/product/__init__.py +0 -0
  684. endoreg_db/utils/product/sum_emissions.py +22 -0
  685. endoreg_db/utils/product/sum_weights.py +20 -0
  686. endoreg_db/utils/pydantic_models/__init__.py +5 -0
  687. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  688. endoreg_db/utils/requirement_helpers.py +0 -0
  689. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  690. endoreg_db/utils/requirement_operator_logic/_old/lab_value_operators.py +678 -0
  691. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +842 -0
  692. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +114 -0
  693. endoreg_db/utils/setup_config.py +196 -0
  694. endoreg_db/utils/storage.py +117 -0
  695. endoreg_db/utils/translation.py +31 -0
  696. endoreg_db/utils/uuid.py +5 -0
  697. endoreg_db/utils/validate_endo_roi.py +33 -0
  698. endoreg_db/utils/validate_subcategory_dict.py +93 -0
  699. endoreg_db/utils/validate_video_detailed.py +415 -0
  700. endoreg_db/utils/video/__init__.py +30 -0
  701. endoreg_db/utils/video/extract_frames.py +100 -0
  702. endoreg_db/utils/video/ffmpeg_wrapper.py +996 -0
  703. endoreg_db/utils/video/names.py +47 -0
  704. endoreg_db/utils/video/streaming_processor.py +386 -0
  705. endoreg_db/utils/video/video_splitter.py +105 -0
  706. endoreg_db/versioning.md +79 -0
  707. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +247 -0
  708. endoreg_db/views/__init__.py +157 -0
  709. endoreg_db/views/anonymization/__init__.py +31 -0
  710. endoreg_db/views/anonymization/media_management.py +486 -0
  711. endoreg_db/views/anonymization/overview.py +307 -0
  712. endoreg_db/views/anonymization/validate.py +310 -0
  713. endoreg_db/views/auth/__init__.py +13 -0
  714. endoreg_db/views/auth/keycloak.py +146 -0
  715. endoreg_db/views/examination/__init__.py +30 -0
  716. endoreg_db/views/examination/examination.py +37 -0
  717. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  718. endoreg_db/views/examination/get_finding_classification_choices.py +62 -0
  719. endoreg_db/views/examination/get_finding_classifications.py +38 -0
  720. endoreg_db/views/examination/get_findings.py +39 -0
  721. endoreg_db/views/examination/get_instruments.py +19 -0
  722. endoreg_db/views/examination/get_interventions.py +14 -0
  723. endoreg_db/views/finding/__init__.py +9 -0
  724. endoreg_db/views/finding/finding.py +116 -0
  725. endoreg_db/views/finding/get_classifications.py +14 -0
  726. endoreg_db/views/finding/get_interventions.py +17 -0
  727. endoreg_db/views/finding_classification/__init__.py +13 -0
  728. endoreg_db/views/finding_classification/base.py +0 -0
  729. endoreg_db/views/finding_classification/finding_classification.py +41 -0
  730. endoreg_db/views/finding_classification/get_classification_choices.py +54 -0
  731. endoreg_db/views/media/__init__.py +32 -0
  732. endoreg_db/views/media/pdf_media.py +411 -0
  733. endoreg_db/views/media/sensitive_metadata.py +372 -0
  734. endoreg_db/views/media/video_media.py +275 -0
  735. endoreg_db/views/meta/__init__.py +7 -0
  736. endoreg_db/views/meta/sensitive_meta_list.py +102 -0
  737. endoreg_db/views/meta/sensitive_meta_verification.py +74 -0
  738. endoreg_db/views/misc/__init__.py +29 -0
  739. endoreg_db/views/misc/center.py +14 -0
  740. endoreg_db/views/misc/csrf.py +8 -0
  741. endoreg_db/views/misc/gender.py +15 -0
  742. endoreg_db/views/misc/stats.py +255 -0
  743. endoreg_db/views/misc/upload_views.py +241 -0
  744. endoreg_db/views/patient/__init__.py +3 -0
  745. endoreg_db/views/patient/patient.py +253 -0
  746. endoreg_db/views/patient_examination/__init__.py +11 -0
  747. endoreg_db/views/patient_examination/patient_examination.py +141 -0
  748. endoreg_db/views/patient_examination/patient_examination_create.py +58 -0
  749. endoreg_db/views/patient_examination/patient_examination_detail.py +63 -0
  750. endoreg_db/views/patient_examination/patient_examination_list.py +72 -0
  751. endoreg_db/views/patient_examination/video.py +228 -0
  752. endoreg_db/views/patient_finding/__init__.py +7 -0
  753. endoreg_db/views/patient_finding/base.py +0 -0
  754. endoreg_db/views/patient_finding/patient_finding.py +71 -0
  755. endoreg_db/views/patient_finding/patient_finding_optimized.py +291 -0
  756. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  757. endoreg_db/views/patient_finding_classification/pfc_create.py +75 -0
  758. endoreg_db/views/report/__init__.py +7 -0
  759. endoreg_db/views/report/reimport.py +177 -0
  760. endoreg_db/views/report/report_stream.py +191 -0
  761. endoreg_db/views/requirement/__init__.py +11 -0
  762. endoreg_db/views/requirement/evaluate.py +278 -0
  763. endoreg_db/views/requirement/lookup.py +380 -0
  764. endoreg_db/views/requirement/lookup_store.py +183 -0
  765. endoreg_db/views/requirement/requirement_utils.py +87 -0
  766. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  767. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  768. endoreg_db/views/stats/__init__.py +13 -0
  769. endoreg_db/views/stats/stats_views.py +266 -0
  770. endoreg_db/views/video/__init__.py +49 -0
  771. endoreg_db/views/video/ai/__init__.py +8 -0
  772. endoreg_db/views/video/ai/label.py +159 -0
  773. endoreg_db/views/video/correction.py +529 -0
  774. endoreg_db/views/video/reimport.py +230 -0
  775. endoreg_db/views/video/segments_crud.py +709 -0
  776. endoreg_db/views/video/video_apply_mask.py +49 -0
  777. endoreg_db/views/video/video_correction.py +22 -0
  778. endoreg_db/views/video/video_download_processed.py +58 -0
  779. endoreg_db/views/video/video_examination_viewset.py +242 -0
  780. endoreg_db/views/video/video_metadata.py +101 -0
  781. endoreg_db/views/video/video_processing_history.py +25 -0
  782. endoreg_db/views/video/video_remove_frames.py +49 -0
  783. endoreg_db/views/video/video_stream.py +334 -0
  784. endoreg_db-0.8.9.32.dist-info/METADATA +404 -0
  785. endoreg_db-0.8.9.32.dist-info/RECORD +787 -0
  786. endoreg_db-0.8.9.32.dist-info/WHEEL +4 -0
  787. endoreg_db-0.8.9.32.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,463 @@
1
+ """
2
+ Utility-Funktionen für Frame-Anonymisierung
3
+
4
+ Diese Datei enthält Hilfsfunktionen für die Frame-Anonymisierung,
5
+ einschließlich Bildverarbeitung, Pfad-Management und Sicherheitsfunktionen.
6
+ """
7
+
8
+ import hashlib
9
+ import secrets
10
+ from pathlib import Path
11
+ from typing import Optional, Dict, List
12
+ from datetime import datetime, timedelta
13
+ import logging
14
+
15
+ from django.conf import settings
16
+ from django.core.exceptions import ValidationError
17
+ from django.utils import timezone
18
+
19
+ logger = logging.getLogger(__name__)
20
+
21
+ # Unterstützte Ausgabeformate
22
+ SUPPORTED_OUTPUT_FORMATS = ["jpg", "jpeg", "png", "webp"]
23
+
24
+ # Anonymisierungsgrade
25
+ ANONYMIZATION_LEVELS = ["minimal", "faces", "full"]
26
+
27
+ # Maximale Dateigröße für Frames (in MB)
28
+ MAX_FRAME_SIZE_MB = 50
29
+
30
+
31
+ def validate_anonymization_request(
32
+ video_id: int, segment_ids: List[int], anonymization_level: str, output_format: str
33
+ ) -> Dict:
34
+ """
35
+ Validiert eine Frame-Anonymisierungsanfrage.
36
+
37
+ Args:
38
+ video_id: Video-ID
39
+ segment_ids: Liste der Segment-IDs
40
+ anonymization_level: Anonymisierungsgrad
41
+ output_format: Ausgabeformat
42
+
43
+ Returns:
44
+ Dict mit Validierungsergebnis
45
+
46
+ Raises:
47
+ ValidationError: Bei ungültigen Parametern
48
+ """
49
+ errors = []
50
+
51
+ # Anonymisierungsgrad validieren
52
+ if anonymization_level not in ANONYMIZATION_LEVELS:
53
+ errors.append(
54
+ f"Invalid anonymization level: {anonymization_level}. "
55
+ f"Supported levels: {', '.join(ANONYMIZATION_LEVELS)}"
56
+ )
57
+
58
+ # Ausgabeformat validieren
59
+ if output_format.lower() not in SUPPORTED_OUTPUT_FORMATS:
60
+ errors.append(
61
+ f"Invalid output format: {output_format}. "
62
+ f"Supported formats: {', '.join(SUPPORTED_OUTPUT_FORMATS)}"
63
+ )
64
+
65
+ # Segment-IDs validieren
66
+ if not segment_ids or len(segment_ids) == 0:
67
+ errors.append("At least one segment ID must be provided")
68
+
69
+ if len(segment_ids) > 100: # Reasonable limit
70
+ errors.append("Too many segments requested (max 100)")
71
+
72
+ # Video-ID validieren
73
+ if video_id <= 0:
74
+ errors.append("Invalid video ID")
75
+
76
+ if errors:
77
+ raise ValidationError(errors)
78
+
79
+ return {
80
+ "valid": True,
81
+ "normalized_format": output_format.lower(),
82
+ "segment_count": len(segment_ids),
83
+ }
84
+
85
+
86
+ def generate_secure_token(length: int = 32) -> str:
87
+ """
88
+ Generiert einen sicheren Token für Downloads.
89
+
90
+ Args:
91
+ length: Token-Länge
92
+
93
+ Returns:
94
+ Sicherer Token
95
+ """
96
+ return secrets.token_urlsafe(length)
97
+
98
+
99
+ def create_secure_download_url(frame_id: int, expiry_hours: int = 24) -> Dict:
100
+ """
101
+ Erstellt eine sichere Download-URL für einen anonymisierten Frame.
102
+
103
+ Args:
104
+ frame_id: Frame-ID
105
+ expiry_hours: Gültigkeitsdauer in Stunden
106
+
107
+ Returns:
108
+ Dict mit URL und Token-Informationen
109
+ """
110
+ token = generate_secure_token()
111
+ expiry_time = timezone.now() + timedelta(hours=expiry_hours)
112
+
113
+ # Token hashen für Datenbank-Speicherung
114
+ token_hash = hashlib.sha256(token.encode()).hexdigest()
115
+
116
+ return {
117
+ "token": token,
118
+ "token_hash": token_hash,
119
+ "expires_at": expiry_time,
120
+ "frame_id": frame_id,
121
+ }
122
+
123
+
124
+ def validate_secure_token(token: str, frame_id: int) -> bool:
125
+ """
126
+ Validiert einen sicheren Download-Token.
127
+
128
+ Args:
129
+ token: Download-Token
130
+ frame_id: Frame-ID
131
+
132
+ Returns:
133
+ True wenn Token gültig ist
134
+ """
135
+ try:
136
+ from endoreg_db.models import AnonymousFrame
137
+
138
+ # Token hashen
139
+ token_hash = hashlib.sha256(token.encode()).hexdigest()
140
+
141
+ # Frame mit Token finden
142
+ frame = AnonymousFrame.objects.filter(
143
+ id=frame_id,
144
+ download_token_hash=token_hash,
145
+ download_expires_at__gt=timezone.now(),
146
+ ).first()
147
+
148
+ return frame is not None
149
+
150
+ except Exception as e:
151
+ logger.error(f"Token validation error: {str(e)}")
152
+ return False
153
+
154
+
155
+ def get_frame_file_info(frame_path: str) -> Optional[Dict]:
156
+ """
157
+ Holt Dateiinformationen für einen Frame.
158
+
159
+ Args:
160
+ frame_path: Pfad zum Frame
161
+
162
+ Returns:
163
+ Dict mit Dateiinformationen oder None
164
+ """
165
+ try:
166
+ path = Path(frame_path)
167
+
168
+ if not path.exists():
169
+ return None
170
+
171
+ stat = path.stat()
172
+
173
+ return {
174
+ "filename": path.name,
175
+ "size_bytes": stat.st_size,
176
+ "size_mb": round(stat.st_size / (1024 * 1024), 2),
177
+ "created_at": datetime.fromtimestamp(stat.st_ctime),
178
+ "modified_at": datetime.fromtimestamp(stat.st_mtime),
179
+ "extension": path.suffix.lower(),
180
+ "exists": True,
181
+ }
182
+
183
+ except Exception as e:
184
+ logger.error(f"Error getting file info for {frame_path}: {str(e)}")
185
+ return None
186
+
187
+
188
+ def calculate_anonymization_progress(
189
+ total_frames: int, processed_frames: int, failed_frames: int
190
+ ) -> Dict:
191
+ """
192
+ Berechnet den Fortschritt der Anonymisierung.
193
+
194
+ Args:
195
+ total_frames: Gesamtzahl der Frames
196
+ processed_frames: Anzahl verarbeiteter Frames
197
+ failed_frames: Anzahl fehlgeschlagener Frames
198
+
199
+ Returns:
200
+ Dict mit Fortschrittsinformationen
201
+ """
202
+ if total_frames == 0:
203
+ return {
204
+ "progress_percent": 0,
205
+ "completed_frames": 0,
206
+ "remaining_frames": 0,
207
+ "success_rate": 0,
208
+ "status": "pending",
209
+ }
210
+
211
+ completed_frames = processed_frames + failed_frames
212
+ progress_percent = (completed_frames / total_frames) * 100
213
+ success_rate = (
214
+ (processed_frames / completed_frames * 100) if completed_frames > 0 else 0
215
+ )
216
+
217
+ # Status bestimmen
218
+ if completed_frames == 0:
219
+ status = "pending"
220
+ elif completed_frames < total_frames:
221
+ status = "processing"
222
+ elif failed_frames == total_frames:
223
+ status = "failed"
224
+ else:
225
+ status = "completed"
226
+
227
+ return {
228
+ "progress_percent": round(progress_percent, 1),
229
+ "completed_frames": completed_frames,
230
+ "remaining_frames": total_frames - completed_frames,
231
+ "success_rate": round(success_rate, 1),
232
+ "status": status,
233
+ "total_frames": total_frames,
234
+ "processed_frames": processed_frames,
235
+ "failed_frames": failed_frames,
236
+ }
237
+
238
+
239
+ def estimate_processing_time(total_frames: int, anonymization_level: str) -> Dict:
240
+ """
241
+ Schätzt die Verarbeitungszeit für die Anonymisierung.
242
+
243
+ Args:
244
+ total_frames: Anzahl der zu verarbeitenden Frames
245
+ anonymization_level: Anonymisierungsgrad
246
+
247
+ Returns:
248
+ Dict mit Zeitschätzungen
249
+ """
250
+ # Geschätzte Verarbeitungszeit pro Frame (in Sekunden)
251
+ time_per_frame = {"minimal": 0.5, "faces": 1.0, "full": 0.8}
252
+
253
+ base_time = time_per_frame.get(anonymization_level, 1.0)
254
+ estimated_seconds = total_frames * base_time
255
+
256
+ # Overhead für Setup und Cleanup
257
+ overhead_seconds = min(30, total_frames * 0.1)
258
+ total_seconds = estimated_seconds + overhead_seconds
259
+
260
+ return {
261
+ "estimated_seconds": int(total_seconds),
262
+ "estimated_minutes": round(total_seconds / 60, 1),
263
+ "frames_per_second": round(1 / base_time, 1),
264
+ "anonymization_level": anonymization_level,
265
+ }
266
+
267
+
268
+ def cleanup_expired_tokens():
269
+ """
270
+ Bereinigt abgelaufene Download-Tokens.
271
+
272
+ Returns:
273
+ Anzahl bereinigter Tokens
274
+ """
275
+ try:
276
+ from endoreg_db.models import AnonymousFrame
277
+
278
+ # Frames mit abgelaufenen Tokens finden
279
+ expired_frames = AnonymousFrame.objects.filter(
280
+ download_expires_at__lt=timezone.now(), download_token_hash__isnull=False
281
+ )
282
+
283
+ count = expired_frames.count()
284
+ expired_frames.update(download_token_hash=None, download_expires_at=None)
285
+
286
+ logger.info(f"Cleaned up {count} expired download tokens")
287
+ return count
288
+
289
+ except Exception as e:
290
+ logger.error(f"Error cleaning up expired tokens: {str(e)}")
291
+ return 0
292
+
293
+
294
+ def get_anonymization_statistics(video_id: Optional[int] = None) -> Dict:
295
+ """
296
+ Holt Statistiken zur Frame-Anonymisierung.
297
+
298
+ Args:
299
+ video_id: Optional - Video-ID für spezifische Statistiken
300
+
301
+ Returns:
302
+ Dict mit Statistiken
303
+ """
304
+ try:
305
+ from endoreg_db.models import FrameAnonymizationRequest, AnonymousFrame
306
+ from django.db.models import Count, Q
307
+
308
+ # Basis-Queryset
309
+ requests_qs = FrameAnonymizationRequest.objects.all()
310
+ frames_qs = AnonymousFrame.objects.all()
311
+
312
+ if video_id:
313
+ requests_qs = requests_qs.filter(video_file_id=video_id)
314
+ frames_qs = frames_qs.filter(video_file_id=video_id)
315
+
316
+ # Request-Statistiken
317
+ request_stats = requests_qs.aggregate(
318
+ total_requests=Count("id"),
319
+ pending_requests=Count("id", filter=Q(status="pending")),
320
+ processing_requests=Count("id", filter=Q(status="processing")),
321
+ completed_requests=Count("id", filter=Q(status="completed")),
322
+ failed_requests=Count("id", filter=Q(status="failed")),
323
+ )
324
+
325
+ # Frame-Statistiken
326
+ frame_stats = frames_qs.aggregate(
327
+ total_frames=Count("id"),
328
+ faces_anonymized=Count("id", filter=Q(anonymization_level="faces")),
329
+ full_anonymized=Count("id", filter=Q(anonymization_level="full")),
330
+ minimal_anonymized=Count("id", filter=Q(anonymization_level="minimal")),
331
+ )
332
+
333
+ # Disk-Space Statistiken
334
+ total_size = 0
335
+ for frame in frames_qs.values_list("anonymized_frame_path", flat=True):
336
+ file_info = get_frame_file_info(frame)
337
+ if file_info:
338
+ total_size += file_info["size_bytes"]
339
+
340
+ return {
341
+ "requests": request_stats,
342
+ "frames": frame_stats,
343
+ "storage": {
344
+ "total_size_bytes": total_size,
345
+ "total_size_mb": round(total_size / (1024 * 1024), 2),
346
+ },
347
+ "video_id": video_id,
348
+ }
349
+
350
+ except Exception as e:
351
+ logger.error(f"Error getting anonymization statistics: {str(e)}")
352
+ return {"requests": {}, "frames": {}, "storage": {}, "error": str(e)}
353
+
354
+
355
+ def validate_frame_path(frame_path: str) -> bool:
356
+ """
357
+ Validiert einen Frame-Pfad auf Sicherheit.
358
+
359
+ Args:
360
+ frame_path: Zu validierender Pfad
361
+
362
+ Returns:
363
+ True wenn Pfad sicher ist
364
+ """
365
+ try:
366
+ path = Path(frame_path).resolve()
367
+
368
+ # Basis-Verzeichnisse definieren
369
+ allowed_dirs = [
370
+ Path(settings.MEDIA_ROOT).resolve(),
371
+ Path(getattr(settings, "FRAME_STORAGE_ROOT", "/tmp")).resolve(),
372
+ ]
373
+
374
+ # Prüfen ob Pfad in erlaubten Verzeichnissen liegt
375
+ for allowed_dir in allowed_dirs:
376
+ try:
377
+ path.relative_to(allowed_dir)
378
+ return True
379
+ except ValueError:
380
+ continue
381
+
382
+ logger.warning(f"Frame path outside allowed directories: {frame_path}")
383
+ return False
384
+
385
+ except Exception as e:
386
+ logger.error(f"Error validating frame path {frame_path}: {str(e)}")
387
+ return False
388
+
389
+
390
+ def get_video_frame_count(video_id: int) -> int:
391
+ """
392
+ Ermittelt die Anzahl verfügbarer Frames für ein Video.
393
+
394
+ Args:
395
+ video_id: Video-ID
396
+
397
+ Returns:
398
+ Anzahl der Frames
399
+ """
400
+ try:
401
+ from endoreg_db.models import VideoFile
402
+
403
+ video = VideoFile.objects.get(id=video_id)
404
+
405
+ if not video.frame_dir:
406
+ return 0
407
+
408
+ frame_dir = Path(video.frame_dir)
409
+ if not frame_dir.exists():
410
+ return 0
411
+
412
+ # Zähle alle Bilddateien
413
+ frame_count = 0
414
+ for ext in ["*.jpg", "*.jpeg", "*.png"]:
415
+ frame_count += len(list(frame_dir.glob(ext)))
416
+
417
+ return frame_count
418
+
419
+ except Exception as e:
420
+ logger.error(f"Error counting frames for video {video_id}: {str(e)}")
421
+ return 0
422
+
423
+
424
+ def format_file_size(size_bytes: int) -> str:
425
+ """
426
+ Formatiert Dateigröße in lesbares Format.
427
+
428
+ Args:
429
+ size_bytes: Größe in Bytes
430
+
431
+ Returns:
432
+ Formatierte Größe
433
+ """
434
+ for unit in ["B", "KB", "MB", "GB"]:
435
+ if size_bytes < 1024.0:
436
+ return f"{size_bytes:.1f} {unit}"
437
+ size_bytes /= 1024.0
438
+ return f"{size_bytes:.1f} TB"
439
+
440
+
441
+ def log_anonymization_activity(
442
+ activity_type: str, details: Dict, user_id: Optional[int] = None
443
+ ):
444
+ """
445
+ Protokolliert Anonymisierungsaktivitäten für Audit-Zwecke.
446
+
447
+ Args:
448
+ activity_type: Art der Aktivität
449
+ details: Details der Aktivität
450
+ user_id: Optional - Benutzer-ID
451
+ """
452
+ try:
453
+ log_entry = {
454
+ "timestamp": timezone.now().isoformat(),
455
+ "activity_type": activity_type,
456
+ "details": details,
457
+ "user_id": user_id,
458
+ }
459
+
460
+ logger.info(f"Anonymization activity: {activity_type}", extra=log_entry)
461
+
462
+ except Exception as e:
463
+ logger.error(f"Error logging anonymization activity: {str(e)}")
@@ -0,0 +1,138 @@
1
+ import hashlib
2
+ from pathlib import Path
3
+ from datetime import datetime, date
4
+ from endoreg_db.utils.file_operations import sha256_file
5
+ import os
6
+
7
+ SALT = os.getenv("DJANGO_SALT", "default_salt")
8
+ DJANGO_NAME_SALT = os.environ.get("DJANGO_SALT", "default_salt")
9
+
10
+
11
+ def get_video_hash(video_path):
12
+ """
13
+ Get the hash of a video file.
14
+ """
15
+ video_hash = sha256_file(video_path)
16
+
17
+ return video_hash
18
+
19
+
20
+ def get_pdf_hash(pdf_path: Path):
21
+ """
22
+ Get the hash of a pdf file.
23
+ """
24
+
25
+ pdf_hash = sha256_file(pdf_path)
26
+
27
+ return pdf_hash
28
+
29
+
30
+ def _get_date_hash_string(date_obj: date) -> str:
31
+ # if date is datetime object, convert to date
32
+ if isinstance(date_obj, datetime):
33
+ # warnings.warn("Date is a datetime object. Converting to date object.")
34
+ date_obj = date_obj.date()
35
+ elif isinstance(date_obj, str):
36
+ # warnings.warn(f"Date is a string ({date_obj}). Converting to date object.")
37
+ date_obj = datetime.strptime(date_obj, "%Y-%m-%d").date()
38
+
39
+ assert isinstance(date_obj, date), "Date must be a date object"
40
+ # if date is 1900-01-01, make it an empty string
41
+ if date_obj == date(1900, 1, 1):
42
+ date_str = ""
43
+ else:
44
+ date_str = date_obj.strftime("%Y-%m-%d")
45
+
46
+ return date_str
47
+
48
+
49
+ def get_hash_string(
50
+ first_name: str = "",
51
+ last_name: str = "",
52
+ dob: date = date(1900, 1, 1),
53
+ center_name: str = "",
54
+ examination_date: date = date(1900, 1, 1),
55
+ endoscope_sn: str = "",
56
+ salt: str = "",
57
+ ):
58
+ """
59
+ Get the string to be hashed for a patient's first name, last name, date of birth, examination date, and endoscope serial number.
60
+ """
61
+ if not salt:
62
+ salt = SALT
63
+
64
+ examination_date_str = _get_date_hash_string(examination_date)
65
+ dob_str = _get_date_hash_string(dob)
66
+
67
+ # Concatenate the patient's first name, last name, date of birth, examination date, endoscope serial number, and salt:
68
+ hash_str = f"{first_name}{last_name}{dob_str}{center_name}{dob_str}{examination_date_str}{endoscope_sn}{salt}"
69
+ return hash_str
70
+
71
+
72
+ def get_patient_hash(
73
+ first_name: str, last_name: str, dob: date, center: str, salt: str = ""
74
+ ):
75
+ """
76
+ Get the hash of a patient's first name, last name, and date of birth.
77
+ """
78
+ # Concatenate the patient's first name, last name, date of birth, and salt:
79
+ hash_str = get_hash_string(
80
+ first_name=first_name,
81
+ last_name=last_name,
82
+ dob=dob,
83
+ center_name=center,
84
+ salt=salt,
85
+ )
86
+ # Create a hash object using SHA-256 algorithm
87
+ hash_object = hashlib.sha256(hash_str.encode())
88
+ # Get the hexadecimal representation of the hash
89
+ patient_hash = hash_object.hexdigest()
90
+
91
+ return patient_hash
92
+
93
+
94
+ def get_patient_examination_hash(
95
+ first_name: str,
96
+ last_name: str,
97
+ dob: date,
98
+ center: str,
99
+ examination_date: date,
100
+ salt: str = "",
101
+ ):
102
+ """
103
+ Get the hash of a patient's first name, last name, date of birth, and examination date.
104
+ """
105
+ # Concatenate the patient's first name, last name, date of birth, examination date, and salt:
106
+ hash_str = get_hash_string(
107
+ first_name=first_name,
108
+ last_name=last_name,
109
+ center_name=center,
110
+ dob=dob,
111
+ examination_date=examination_date,
112
+ salt=salt,
113
+ )
114
+ # Create a hash object using SHA-256 algorithm
115
+ hash_object = hashlib.sha256(hash_str.encode())
116
+ # Get the hexadecimal representation of the hash
117
+ patient_examination_hash = hash_object.hexdigest()
118
+
119
+ return patient_examination_hash
120
+
121
+
122
+ def get_examiner_hash(first_name, last_name, center_name, salt):
123
+ """
124
+ Get the hash of an examiner's first name, last name, and center name.
125
+ """
126
+ # Concatenate the examiner's first name, last name, center name, and salt:
127
+ hash_str = get_hash_string(
128
+ first_name=first_name,
129
+ last_name=last_name,
130
+ center_name=center_name,
131
+ salt=salt,
132
+ )
133
+ # Create a hash object using SHA-256 algorithm
134
+ hash_object = hashlib.sha256(hash_str.encode())
135
+ # Get the hexadecimal representation of the hash
136
+ examiner_hash = hash_object.hexdigest()
137
+
138
+ return examiner_hash
File without changes