endoreg-db 0.8.9.32__py3-none-any.whl

endoreg_db/data/finding_classification_choice/02_colonoscopy_location.yaml

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+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "terminal_ileum"
+    name_de: "terminales Ileum"
+    name_en: "Terminal Ileum"
+    subcategories:
+      description: { choices: ["unspecified"], required: false }
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 0
+        max: 180
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "cecum"
+    name_de: "Caecum"
+    name_en: "Cecum"
+    subcategories:
+      description:
+        choices: ["unspecified", "ileocecal-valve", "peri-appendicular"]
+        default: "unspecified"
+        probability: [0.5, 0.3, 0.2]
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 60
+        max: 140
+        distribution: "uniform"
+        std: null
+        mean: null
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "ascending_colon"
+    name_de: "Colon ascendens"
+    name_en: "Ascending Colon"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 40
+        max: 100
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "right_flexure"
+    name_de: "Rechte Flexur"
+    name_en: "Right Flexure"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 80
+        max: 180
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "left_flexure"
+    name_de: "Linke Flexur"
+    name_en: "Left Flexure"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 80
+        max: 180
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "transverse_colon"
+    name_de: "Colon transversum"
+    name_en: "Transverse Colon"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 40
+        max: 80
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "descending_colon"
+    name_de: "Colon descendens"
+    name_en: "Descending Colon"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 35
+        max: 70
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "sigmoid_colon"
+    name_de: "Colon sigmoideum"
+    name_en: "Sigmoid Colon"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 20
+        max: 50
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: true
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "rectum"
+    name_de: "Rektum"
+    name_en: "Rectum"
+    subcategories:
+      description:
+        choices: ["1/3", "2/3", "3/3"]
+        probability: [0.3, 0.3, 0.4]
+        default: "3/3"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 5
+        max: 20
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: true
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "anal_canal"
+    name_de: "Analkanal"
+    name_en: "Anal Canal"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.5, 0.3, 0.2]
+        default: "unspecified"
+        required: false
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 0
+        max: 3
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: true
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "left_colon"
+    name_de: "linkes Kolon"
+    name_en: "Left Colon"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.3, 0.3, 0.3]
+        default: "proximal"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 0
+        max: 180
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "right_colon"
+    name_de: "rechtes Kolon"
+    name_en: "Right Colon"
+    subcategories:
+      description:
+        choices: ["unspecified", "proximal", "distal"]
+        probability: [0.3, 0.3, 0.3]
+        default: "proximal"
+        required: true
+    numerical_descriptors:
+      cm_rectified:
+        unit: "centimeter"
+        min: 0
+        max: 180
+        mean: null
+        std: null
+        distribution: "uniform"
+        description: "Insertion depth of the colonoscope in cm (rectified)"
+        required: false

endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml

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+# Hemorrhoids classification
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "hemorrhoids_grade_0_no_hemorrhoids"
+    name_de: "Keine Hämorrhoiden"
+    name_en: "No hemorrhoids"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "hemorrhoids_grade_1"
+    name_de: "Grad 1"
+    name_en: "Grade 1"
+    description: "Mucosal hemorrhoids that do not prolapse"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "hemorrhoids_grade_2"
+    name_de: "Grad 2"
+    name_en: "Grade 2"
+    description: "Hemorrhoids that prolapse during straining but reduce spontaneously"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "hemorrhoids_grade_3"
+    name_de: "Grad 3"
+    name_en: "Grade 3"
+    description: "Hemorrhoids that prolapse during straining and require manual reduction"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "hemorrhoids_grade_4"
+    name_de: "Grad 4"
+    name_en: "Grade 4"
+    description: "Irreducible prolapsed hemorrhoids"

endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml

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+# JNET
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_jnet_1"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_jnet_2a"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_jnet_2b"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_jnet_3"
+
+# NICE
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_NICE_type_1"
+    name_de: "Kolonläsion - NICE Typ 1"
+    name_en: "Colon lesion - NICE type 1"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_NICE_type_2"
+    name_de: "Kolonläsion - NICE Typ 2"
+    name_en: "Colon lesion - NICE type 2"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_NICE_type_3"
+    name_de: "Kolonläsion - NICE Typ 3"
+    name_en: "Colon lesion - NICE type 3"
+
+# Kudo
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_1"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_2"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_3s"
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_3l"
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_4"
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_5i"
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_kudo_5n"
+
+# Sano
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_sano_1"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_sano_2"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_sano_3a"
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_sano_3b"

endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_morphology.yaml

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+# Paris
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_Is"
+    name_de: "Kolonläsion Formklassifikation (Paris Is)"
+    name_en: "Colon Lesion Shape Classification (Paris Is)"
+    description: "Shape classification for colon lesions (Paris Is)"
+
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_Ip"
+    name_de: "Kolonläsion Formklassifikation (Paris Ip)"
+    name_en: "Colon Lesion Shape Classification (Paris Ip)"
+    description: "Shape classification for colon lesions (Paris Ip)"
+
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_IIa"
+    name_de: "Kolonläsion Formklassifikation (Paris IIa)"
+    name_en: "Colon Lesion Shape Classification (Paris IIa)"
+    description: "Shape classification for colon lesions (Paris IIa)"
+
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_IIb"
+    name_de: "Kolonläsion Formklassifikation (Paris IIb)"
+    name_en: "Colon Lesion Shape Classification (Paris IIb)"
+    description: "Shape classification for colon lesions (Paris IIb)"
+
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_IIc"
+    name_de: "Kolonläsion Formklassifikation (Paris IIc)"
+    name_en: "Colon Lesion Shape Classification (Paris IIc)"
+    description: "Shape classification for colon lesions (Paris IIc)"
+
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_III"
+    name_de: "Kolonläsion Formklassifikation (Paris III)"
+    name_en: "Colon Lesion Shape Classification (Paris III)"
+    description: "Shape classification for colon lesions (Paris III)"
+
+# IIa+IIc
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_IIa_IIc"
+    name_de: "Kolonläsion Formklassifikation (Paris IIa+IIc)"
+    name_en: "Colon Lesion Shape Classification (Paris IIa+IIc)"
+    description: "Shape classification for colon lesions (Paris IIa+IIc)"
+
+# IIb+IIc
+- model: endoreg_db.finiding_morphology_classification_choice
+  fields:
+    name: "colon_lesion_paris_IIb_IIc"
+    name_de: "Kolonläsion Formklassifikation (Paris IIb+IIc)"
+    name_en: "Colon Lesion Shape Classification (Paris IIb+IIc)"
+    description: "Shape classification for colon lesions (Paris IIb+IIc)"
+
+# LST
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_lst_granular_homogeneous"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_lst_granular_nodular_mixed"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_lst_non_granular_flat_elevated"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_lst_non_granular_pseudodepressed"

endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml

@@ -0,0 +1,27 @@
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_size_categorical_diminutive"
+    name_de: "Größenklassifikation Kolonläsion (kategorisch)"
+    name_en: "Colon Lesion Size Classification (categorical)"
+    description: "Diminutive (< 6 mm)"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_size_categorical_small"
+    name_de: "Größenklassifikation Kolonläsion (kategorisch)"
+    name_en: "Colon Lesion Size Classification (categorical)"
+    description: "Small (6 - 9 mm)"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_size_categorical_medium"
+    name_de: "Größenklassifikation Kolonläsion (kategorisch)"
+    name_en: "Colon Lesion Size Classification (categorical)"
+    description: "Medium (10 - 19 mm)"
+
+- model: endoreg_db.finding_classification_choice
+  fields:
+    name: "colon_lesion_size_categorical_large"
+    name_de: "Größenklassifikation Kolonläsion (kategorisch)"
+    name_en: "Colon Lesion Size Classification (categorical)"
+    description: "Large (> 19 mm)"

endoreg_db/data/finding_classification_type/00_generic.yaml

@@ -0,0 +1,53 @@
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "location"
+    name_de: "Lokalisation"
+    name_en: "Location"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "morphology"
+    name_de: "Morphologie"
+    name_en: "Morphology"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "histology"
+    name_de: "Histologie"
+    name_en: "Histology"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "size"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "surface_integrity"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "planarity"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "circularity"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "shape"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "capillary_pattern"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "inferrable"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "bowel_prep"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "colon_lesion_advanced_imaging"

endoreg_db/data/finding_classification_type/02_colonoscopy.yaml

@@ -0,0 +1,9 @@
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "colonoscopy_bowel_prep"
+    name_de: "Darmvorbereitung"
+    name_en: "Bowel Preparation"
+
+- model: endoreg_db.finding_classification_type
+  fields:
+    name: "colonoscopy_advanced_imaging"

endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml

@@ -0,0 +1,59 @@
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_injection_liftup
+    description:
+      Lift-up injection is a technique used to lift up a lesion in the
+      colon. It is performed by injecting a solution under the lesion to create a
+      cushion of fluid that lifts the lesion away from the colon wall. This allows
+      the lesion to be removed more easily and reduces the risk of complications during
+      the procedure.
+    intervention_types:
+      - diagnostic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_foreign_body_removal_generic
+    description:
+      Foreign body removal is a technique used to remove objects that have
+      been accidentally swallowed and are stuck in the colon.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_foreign_body_removal_grasper
+    description:
+      Foreign body removal with grasper is a technique used to remove objects
+      that have been accidentally swallowed and are stuck in the colon using a grasper tool.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_foreign_body_removal_net
+    description:
+      Foreign body removal with net is a technique used to remove objects
+      that have been accidentally swallowed and are stuck in the colon using a net tool.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_foreign_body_removal_snare
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_biopsy_grasper_generic
+    description:
+      Biopsy is a technique used to take a small sample of tissue from
+      a lesion in the colon. It is performed by inserting a small instrument through
+      the colonoscope and removing a small piece of tissue from the lesion. The tissue
+      sample is then sent to a laboratory for analysis to determine if the lesion
+      is cancerous or benign.
+    intervention_types:
+      - diagnostic
+      - invasive

endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml

@@ -0,0 +1,44 @@
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_ablation_radiofrequency
+    description:
+      Radiofrequency ablation is a technique used to destroy abnormal tissue
+      in the colon using heat generated by radiofrequency energy.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_ablation_cryotherapy
+    description:
+      Cryotherapy is a technique used to destroy abnormal tissue in the
+      colon using extreme cold.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_ablation_laser
+    description:
+      Laser ablation is a technique used to destroy abnormal tissue in the
+      colon using focused light energy.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+# argon_plasma_coagulation
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_ablation_argon_plasma_coagulation
+    description:
+      Argon plasma coagulation (APC) is a non-contact thermal ablation
+      technique used to treat various lesions in the colon. It involves the use of ionized
+      argon gas to deliver electrical energy to the target tissue, causing coagulation and
+      devitalization of the lesion. APC is commonly used for the treatment of bleeding
+      lesions, such as angiodysplasia, as well as for the ablation of residual adenomatous
+      tissue following polypectomy.
+    intervention_types:
+      - therapeutic
+      - invasive

endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml

@@ -0,0 +1,55 @@
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_injection_vasoactive
+    description:
+      Vasoactive injection is a technique used to reduce bleeding from
+      a lesion in the colon. It is performed by injecting a solution into the lesion
+      that causes the blood vessels to constrict, reducing the flow of blood to the
+      area. This can help to stop bleeding and make it easier to remove the lesion
+      during the procedure.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_hemoclip_generic
+    description:
+      Clip closure is a technique used to close a defect in the colon wall
+      after a polyp has been removed. It is performed by placing a small metal clip
+      over the defect to seal it and prevent bleeding or perforation. The clip is
+      left in place until the defect has healed, usually within a few days.
+    intervention_types:
+      - therapeutic
+      - invasive
+      - foreign_body
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_sclerotherapy_generic
+    description: Sclerotherapy is a technique used to treat bleeding lesions.
+    intervention_types:
+      - therapeutic
+      - invasive
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_rubber_band_ligation_generic
+    description:
+      Rubber band ligation is a technique used to treat bleeding lesions
+      in the colon.
+    intervention_types:
+      - therapeutic
+      - invasive
+      - foreign_body
+
+- model: endoreg_db.finding_intervention
+  fields:
+    name: endoscopy_over_the_scope_clip_generic
+    description:
+      Over-the-scope clip (OTSC) is a clipping system used to close defects
+      in the GI tract.
+    intervention_types:
+      - therapeutic
+      - invasive
+      - foreign_body