endoreg-db 0.8.9.32__py3-none-any.whl

endoreg_db/data/lab_value/gastrointestinal_function.yaml

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+
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "albumin"
+    name_de: "Albumin"
+    name_en: "Albumin"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 3.5, "max": 5.5}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "alkaline_phosphatase"
+    name_de: "Alkalische Phosphatase"
+    name_en: "Alkaline Phosphatase"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 30, "max": 120}
+    default_numerical_value_distribution: "uniform_default"
+
+# ALT and GPT are the same enzyme
+- model: endoreg_db.lab_value 
+  fields:
+    name: "alanine_aminotransferase"
+    name_de: "Alanin-Aminotransferase"
+    name_en: "Alanine Aminotransferase"
+    abbreviation: "ALT"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "glutamic_pyruvic_transaminase"
+    name_de: "Glutamat-Pyruvat-Transaminase"
+    name_en: "Glutamic-Pyruvic Transaminase"
+    abbreviation: "GPT"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value 
+  fields:
+    name: "amylase"
+    name_de: "Amylase"
+    name_en: "Amylase"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 25, "max": 125}
+    default_numerical_value_distribution: "uniform_default"
+
+# Aspartate aminotransferase (AST): 10–40 U/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "aspartate_aminotransferase"
+    name_de: "Aspartat-Aminotransferase"
+    name_en: "Aspartate Aminotransferase"
+    abbreviation: "AST"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+    default_numerical_value_distribution: "uniform_default"
+
+# AST and GOT are the same
+- model: endoreg_db.lab_value
+  fields:
+    name: "glutamic_oxaloacetic_transaminase"
+    name_de: "Glutamat-Oxalacetat-Transaminase"
+    name_en: "Glutamic-Oxaloacetic Transaminase"
+    abbreviation: "GOT"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+    default_numerical_value_distribution: "uniform_default"
+
+
+# Direct bilirubin: 0.1–0.3 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "direct_bilirubin"
+    name_de: "Direktes Bilirubin"
+    name_en: "Direct Bilirubin"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0.1, "max": 0.3}
+    default_numerical_value_distribution: "uniform_default"
+
+# Gamma glutamyl transferase: Female: 8–40 U/L; male: 9–50 U/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "gamma_glutamyl_transferase"
+    name_de: "Gamma-Glutamyl-Transferase"
+    name_en: "Gamma-Glutamyl Transferase"
+    abbreviation: "GGT"
+    default_unit: "units per liter"
+    normal_range_gender_dependent: true
+    default_numerical_value_distribution: "uniform_default"
+    default_normal_range: {
+      "female": {
+        "min": 8,
+        "max": 40
+      },
+      "male": {
+        "min": 9,
+        "max": 50
+      }
+    }
+
+# Lipase: 10–140 U/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "lipase"
+    name_de: "Lipase"
+    name_en: "Lipase"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 140}
+    default_numerical_value_distribution: "uniform_default"
+
+# Total bilirubin: 0.3–1.0 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_bilirubin"
+    name_de: "Gesamtbilirubin"
+    name_en: "Total Bilirubin"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0.3, "max": 1.0}
+    default_numerical_value_distribution: "uniform_default"
+
+# Total protein: 5.5–9.0 g/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_protein"
+    name_de: "Gesamtprotein"
+    name_en: "Total Protein"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 5.5, "max": 9.0}
+    default_numerical_value_distribution: "uniform_default"

endoreg_db/data/lab_value/hematology.yaml

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+# Hematology
+# Hemoglobin: Female: 12–16 g/dL; male: 14–18 g/dL
+- model: endoreg_db.lab_value
+  fields:
+    name: "hemoglobin"
+    name_de: "Hämoglobin"
+    name_en: "Hemoglobin"
+    abbreviation: "Hb"
+    normal_range_gender_dependent: true
+    default_unit: "gram per deciliter"
+    default_normal_range: {
+      "male": {
+        "min": 14, "max": 18
+      },
+      "female": {
+        "min": 12, "max": 16
+      }
+    }
+    default_numerical_value_distribution: "uniform_default"
+
+# Hematocrit Female: 37%–47%; male: 42%–50% 
+- model: endoreg_db.lab_value
+  fields:
+    name: "hematocrit"
+    name_de: "Hämatokrit"
+    name_en: "Hematocrit"
+    abbreviation: "Hct"
+    normal_range_gender_dependent: true
+    default_unit: "percent"
+    default_normal_range: {
+      "male": {
+        "min": 42, "max": 50
+      },
+      "female": {
+        "min": 37, "max": 47
+      }
+    }
+    default_numerical_value_distribution: "uniform_default"
+
+# Glycosylated hemoglobin 4.0%–5.6% 
+- model: 
+  fields:
+    name: "glycosylated_hemoglobin"
+    name_de: "Glykosyliertes Hämoglobin"
+    name_en: "Glycosylated Hemoglobin"
+    abbreviation: "HbA1c"
+    default_unit: "percent"
+    default_normal_range: {"min": 4.0, "max": 5.6}
+    default_numerical_value_distribution: "uniform_default"
+
+# Mean corpuscular volume (MCV): 80–98 fL
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_volume"
+    name_de: "Mittleres korpuskuläres Volumen"
+    name_en: "Mean Corpuscular Volume"
+    abbreviation: "MCV"
+    default_unit: "femtoliter"
+    default_normal_range: {"min": 80, "max": 98}
+    default_numerical_value_distribution: "uniform_default"
+
+# Red blood cell distribution width (RDW): 9.0%–14.5% 
+- model: endoreg_db.lab_value
+  fields:
+    name: "red_blood_cell_distribution_width"
+    name_de: "Erythrozytenverteilungsbreite"
+    name_en: "Red Blood Cell Distribution Width"
+    abbreviation: "RDW"
+    default_unit: "percent"
+    default_normal_range: {"min": 9.0, "max": 14.5}
+    default_numerical_value_distribution: "uniform_default"
+
+# Mean corpuscular hemoglobin (MCH): 28–32 pg 
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_hemoglobin"
+    name_de: "Mittleres korpuskuläres Hämoglobin"
+    name_en: "Mean Corpuscular Hemoglobin"
+    abbreviation: "MCH"
+    default_unit: "picogram"
+    default_normal_range: {"min": 28, "max": 32}
+    default_numerical_value_distribution: "uniform_default"
+
+# Mean corpuscular hemoglobin concentration (MCHC): 33–36 g/dL  
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_hemoglobin_concentration"
+    name_de: "Mittleres korpuskuläres Hämoglobinkonzentration"
+    name_en: "Mean Corpuscular Hemoglobin Concentration"
+    abbreviation: "MCHC"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 33, "max": 36}
+    default_numerical_value_distribution: "uniform_default"
+
+
+# Reticulocytes 0.5%–1.5% of red cells 
+- model: endoreg_db.lab_value
+  fields:
+    name: "reticulocytes"
+    name_de: "Retikulozyten"
+    name_en: "Reticulocytes"
+    abbreviation: "Reti"
+    default_unit: "percent"
+    default_normal_range: {"min": 0.5, "max": 1.5}
+    default_numerical_value_distribution: "uniform_default"
+
+# White blood cells (WBC) 4-10 x 10^9/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "white_blood_cells"
+    name_de: "Leukozyten"
+    name_en: "White Blood Cells"
+    abbreviation: "WBC"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 4, "max": 10}
+    default_numerical_value_distribution: "uniform_default"
+
+# Neutrophils: 2-8 x 109/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "neutrophils"
+    name_de: "Neutrophile"
+    name_en: "Neutrophils"
+    abbreviation: "Neu"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 2, "max": 8}
+    default_numerical_value_distribution: "uniform_default"
+
+
+# Bands: < 1 x 109/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "bands"
+    name_de: "Stabkernige"
+    name_en: "Bands"
+    abbreviation: "Bands"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 0.0001, "max": 1}
+    default_numerical_value_distribution: "uniform_default"
+
+# Lymphocytes: 1000 to 4800/mcL (1 to 4.8 × 109/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "lymphocytes"
+    name_de: "Lymphozyten"
+    name_en: "Lymphocytes"
+    abbreviation: "Lym"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 1, "max": 4.8}
+    default_numerical_value_distribution: "uniform_default"
+
+
+# Monocytes: 0.2-0.8 x 109/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "monocytes"
+    name_de: "Monozyten"
+    name_en: "Monocytes"
+    abbreviation: "Mon"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 0.2, "max": 0.8}
+    default_numerical_value_distribution: "uniform_default"
+
+# Eosinophils: .000-0.600 th/uL (0-6%) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "eosinophils"
+    name_de: "Eosinophile"
+    name_en: "Eosinophils"
+    abbreviation: "Eos"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 0.01, "max": 0.6}
+    default_numerical_value_distribution: "uniform_default"
+
+# Platelets: 150,000-350,000/µL (150-350 x 109/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "platelets"
+    name_de: "Thrombozyten"
+    name_en: "Platelets"
+    abbreviation: "Plt"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 150, "max": 350}
+    default_numerical_value_distribution: "uniform_default"

endoreg_db/data/lab_value/hormones.yaml

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+- model: endoreg_db.lab_value
+  fields:
+    name: "thyroxine_binding_globulin"
+    name_de: "Thyroxin-bindendes Globulin"
+    name_en: "Thyroxine-binding globulin"
+    abbreviation: "TBG"
+    default_unit: "microgram per mililiter"
+    default_normal_range: {"min": 12, "max": 27}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "thyroid_stimulating_hormone"
+    name_de: "Thyroidea-stimulierendes Hormon"
+    name_en: "Thyroid-stimulating hormone"
+    abbreviation: "TSH"
+    default_unit: "microinternational units per mililiter"
+    default_normal_range: {"min": 0.5, "max": 4.0}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_thyroxine"
+    name_de: "Gesamtthyroxin"
+    name_en: "Total Thyroxine"
+    abbreviation: "T4"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 5, "max": 12}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_triiodothyronine"
+    name_de: "Gesamttriiodthyronin"
+    name_en: "Total Triiodothyronine"
+    abbreviation: "T3"
+    default_unit: "nanogram per deciliter"
+    default_normal_range: {"min": 80, "max": 180}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "free_triiodothyronine"
+    name_de: "Freies Triiodthyronin"
+    name_en: "Free Triiodothyronine"
+    abbreviation: "fT3"
+    default_unit: "picogram per mililiter"
+    default_normal_range: {"min": 2.3, "max": 4.2}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "free_thyroxine"
+    name_de: "Freies Thyroxin"
+    name_en: "Free Thyroxine"
+    abbreviation: "fT4"
+    default_unit: "nanogram per deciliter"
+    default_normal_range: {"min": 0.8, "max": 2.8}
+    default_numerical_value_distribution: "uniform_default"

endoreg_db/data/lab_value/lipids.yaml

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+# Triglycerides: ˂150 mg/dL
+# Total cholesterol: ˂200 mg/dL
+# High-density lipoprotein (HDL): Female: ˂50 mg/dL; male: ˂40 mg/dL
+# Low-density lipoprotein (LDL): ˂100 mg/dL
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "triglycerides"
+    name_de: "Triglyceride"
+    name_en: "Triglycerides"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {
+      "min": 0,
+      "max": 150
+    }
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_cholesterol"
+    name_de: "Gesamtcholesterin"
+    name_en: "Total Cholesterol"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0,"max": 200}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value 
+  fields:
+    name: "high_density_lipoprotein"
+    name_de: "High-Density-Lipoprotein"
+    name_en: "High-Density Lipoprotein"
+    default_unit: "miligram per deciliter"
+    normal_range_gender_dependent: true
+    default_normal_range: {
+      "female": {
+        "min": 10,
+        "max": 50
+      },
+      "male": {
+        "min": 10,
+        "max": 40
+      }
+    }
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "low_density_lipoprotein"
+    name_de: "Low-Density-Lipoprotein"
+    name_en: "Low-Density Lipoprotein"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 20, "max": 100}
+    default_numerical_value_distribution: "uniform_default"

endoreg_db/data/lab_value/misc.yaml

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+# C-reactive protein: < 0.5 mg/dL 
+# D-dimer: ≤ 300 ng/mL (300 µg/L) 
+# Lactate dehydrogenase (LDH): 60-160 U/L
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "c_reactive_protein"
+    name_de: "C-reaktives Protein"
+    name_en: "C-reactive protein"
+    abbreviation: "CRP"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0, "max": 0.5}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "d_dimer"
+    name_de: "D-Dimer"
+    name_en: "D-dimer"
+    abbreviation: "D-Dimer"
+    default_unit: "nanogram per mililiter"
+    default_normal_range: {"min": 50, "max": 300}
+    default_numerical_value_distribution: "uniform_default"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "lactate_dehydrogenase"
+    name_de: "Laktatdehydrogenase"
+    name_en: "Lactate dehydrogenase"
+    abbreviation: "LDH"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 60, "max": 160}
+    default_numerical_value_distribution: "uniform_default"
+
+# Categorical Lab Values
+- model: endoreg_db.lab_value
+  fields:
+    name: "blood_group"
+    name_de: "Blutgruppe"
+    name_en: "Blood Group"
+    abbreviation: "BG"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "urine_bacteria_culture"
+    name_de: "Urinbakterienkultur"
+    name_en: "Urine Bacteria Culture"
+    abbreviation: "UBC"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "microbiology_pathogen_report"
+    name_de: "Mikrobiologie Erregerbericht"
+    name_en: "Microbiology Pathogen Report"
+    abbreviation: "MPR"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "drug_screening_urine"
+    name_de: "Drogenscreening Urin"
+    name_en: "Drug Screening Urine"
+    abbreviation: "DSU"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "antibiotic_resistance_report"
+    name_de: "Antibiotikaresistenzbericht"
+    name_en: "Antibiotic Resistance Report"
+    abbreviation: "ARR"
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "cytology_report"
+    name_de: "Zytologiebericht"
+    name_en: "Cytology Report"
+    abbreviation: "CR"

endoreg_db/data/lab_value/renal_function.yaml

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+- model: endoreg_db.lab_value
+  fields:
+    name: "estimated_glomerular_filtration_rate"
+    name_de: "Geschätzte Glomeruläre Filtrationsrate"
+    name_en: "estimated glomerular filtration rate"
+    abbreviation: "eGFR"
+    default_unit: "mililiter per minute per 1.73m^2"
+    default_normal_range: {
+      "min": 60,
+      "max": 120
+    }
+    default_numerical_value_distribution: "uniform_default"

endoreg_db/data/log_type/data.yaml

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+- model: endoreg_db.log_type
+  fields:
+    name: 'service-alive'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'service-error'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'service-info'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'service-warning'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'service-status'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'service-task'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'device-alive'
+    description: 'Data log type'
+
+- model: endoreg_db.log_type
+  fields:
+    name: 'device-error'
+    description: 'Data log type'
+
+# device-status
+- model: endoreg_db.log_type
+  fields:
+    name: 'device-status'
+    description: 'Data log type'
+
+# device-task
+- model: endoreg_db.log_type
+  fields:
+    name: 'device-task'
+    description: 'Data log type'
+
+# device-info
+- model: endoreg_db.log_type
+  fields:
+    name: 'device-info'
+    description: 'Data log type'

endoreg_db/data/lx_client_tag/base.yaml

@@ -0,0 +1,54 @@
+# Client Tags
+- model: endoreg_db.lx_client_tag
+  fields:
+    name: "coloreg"
+    description: "Coloreg related clients"
+    permissions: [
+      "local_base_db_read",
+      "local_base_db_write",
+    ]
+
+- model: endoreg_db.lx_client_tag
+  fields:
+    name: "client"
+    description: "General client"
+    permissions: [
+      "local_base_db_read",
+      "local_base_db_write",
+    ]
+
+- model: endoreg_db.lx_client_tag
+  fields:
+    name: "server"
+    description: "General server"
+    permissions: [
+      "local_base_db_read",
+      "local_base_db_write",
+    ]
+
+- model: endoreg_db.lx_client_tag
+  fields:
+    name: "production"
+    description: "Production environment"
+    permissions: [
+      "local_base_db_read",
+      "local_base_db_write",
+    ]
+
+- model: endoreg_db.lx_client_tag
+  fields:
+    name: "development"
+    description: "Development environment"
+    permissions: [
+      "local_base_db_read",
+      "local_base_db_write",
+    ]
+
+- model: endoreg_db.lx_client_tag
+  fields:
+    name: "test"
+    description: "Test environment"
+    permissions: [
+      "local_base_db_read",
+      "local_base_db_write",
+    ]

endoreg_db/data/lx_client_type/base.yaml

@@ -0,0 +1,30 @@
+# Client Types
+- model: endoreg_db.lx_clienttype
+  fields:
+    name: "base-client"
+    abbreviation: "c"
+
+- model: endoreg_db.lx_clienttype
+  fields:
+    name: "gpu-client"
+    abbreviation: "gc"
+
+- model: endoreg_db.lx_clienttype
+  fields:
+    name: "coloreg-client"
+    abbreviation: "cc"
+
+- model: endoreg_db.lx_clienttype
+  fields:
+    name: "base-server"
+    abbreviation: "s"
+
+- model: endoreg_db.lx_clienttype
+  fields:
+    name: "gpu-server"
+    abbreviation: "gs"
+
+- model: endoreg_db.lx_clienttype
+  fields:
+    name: "storage-server"
+    abbreviation: "ss"

endoreg_db/data/lx_permission/base.yaml

@@ -0,0 +1,24 @@
+
+# BASE_PERMISSION_NAMES = [
+#     "local_admin",
+#     "local_user",
+#     "local_base_db_read",
+#     "local_base_db_write",
+# ]
+
+- model: endoreg_db.lx_permission
+  fields:
+    name: "local_admin"
+
+- model: endoreg_db.lx_permission
+  fields:
+    name: "local_user"
+
+- model: endoreg_db.lx_permission 
+  fields:
+    name: "local_base_db_read"  
+
+- model: endoreg_db.lx_permission 
+  fields:
+    name: "local_base_db_write"
+