arctrl 3.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +23 -0
- arctrl/cwl.py +12 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwlprocessing_unit.py +221 -0
- arctrl/py/CWL/cwltypes.py +364 -0
- arctrl/py/CWL/decode.py +3532 -0
- arctrl/py/CWL/encode.py +1905 -0
- arctrl/py/CWL/expression_tool_description.py +192 -0
- arctrl/py/CWL/hash_helpers.py +60 -0
- arctrl/py/CWL/inputs.py +122 -0
- arctrl/py/CWL/operation_description.py +169 -0
- arctrl/py/CWL/outputs.py +171 -0
- arctrl/py/CWL/parameter_reference.py +74 -0
- arctrl/py/CWL/requirements.py +350 -0
- arctrl/py/CWL/tool_description.py +192 -0
- arctrl/py/CWL/workflow_description.py +181 -0
- arctrl/py/CWL/workflow_steps.py +354 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +89 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +291 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +213 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +396 -0
- arctrl/py/Contract/git.py +116 -0
- arctrl/py/Contract/license.py +58 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +350 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Conversion/__init__.py +0 -0
- arctrl/py/Conversion/assay.py +151 -0
- arctrl/py/Conversion/basic.py +559 -0
- arctrl/py/Conversion/column_index.py +91 -0
- arctrl/py/Conversion/datamap.py +36 -0
- arctrl/py/Conversion/date_time.py +32 -0
- arctrl/py/Conversion/investigation.py +171 -0
- arctrl/py/Conversion/person.py +148 -0
- arctrl/py/Conversion/process.py +828 -0
- arctrl/py/Conversion/run.py +367 -0
- arctrl/py/Conversion/scholarly_article.py +163 -0
- arctrl/py/Conversion/study.py +99 -0
- arctrl/py/Conversion/table.py +229 -0
- arctrl/py/Conversion/workflow.py +680 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +512 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +290 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1206 -0
- arctrl/py/Core/Table/arc_table_aux.py +1308 -0
- arctrl/py/Core/Table/arc_tables.py +574 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5312 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1375 -0
- arctrl/py/Core/data.py +247 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/datamap.py +217 -0
- arctrl/py/Core/identifier_setters.py +43 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +298 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +1 -0
- arctrl/py/FileSystem/default_gitignore.py +1 -0
- arctrl/py/FileSystem/default_license.py +1 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +483 -0
- arctrl/py/FileSystem/path.py +266 -0
- arctrl/py/Json/Datamap/__init__.py +0 -0
- arctrl/py/Json/Datamap/data_context.py +101 -0
- arctrl/py/Json/Datamap/datamap.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +125 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +91 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +143 -0
- arctrl/py/Json/ROCrate/ldgraph.py +117 -0
- arctrl/py/Json/ROCrate/ldnode.py +304 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +375 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +271 -0
- arctrl/py/Json/encode.py +140 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/run.py +275 -0
- arctrl/py/Json/string_table.py +87 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/Json/workflow.py +307 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +103 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +67 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/datamap.py +36 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +91 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/run.py +68 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/JsonIO/workflow.py +68 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
- arctrl/py/ROCrate/LDTypes/comment.py +131 -0
- arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
- arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
- arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
- arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
- arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
- arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
- arctrl/py/ROCrate/LDTypes/file.py +281 -0
- arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
- arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
- arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
- arctrl/py/ROCrate/LDTypes/organization.py +83 -0
- arctrl/py/ROCrate/LDTypes/person.py +484 -0
- arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
- arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
- arctrl/py/ROCrate/LDTypes/sample.py +202 -0
- arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
- arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
- arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
- arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +406 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +435 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +177 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/datamap.py +43 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/WorkflowGraph/__init__.py +0 -0
- arctrl/py/WorkflowGraph/adapters.py +141 -0
- arctrl/py/WorkflowGraph/build_options.py +45 -0
- arctrl/py/WorkflowGraph/builder.py +720 -0
- arctrl/py/WorkflowGraph/graph_types.py +260 -0
- arctrl/py/WorkflowGraph/query_helpers.py +76 -0
- arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
- arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
- arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1891 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +142 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/cwlrun_resolver.py +228 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
- arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/siren/__init__.py +0 -0
- arctrl/py/fable_modules/siren/config.py +1038 -0
- arctrl/py/fable_modules/siren/formatting.py +1121 -0
- arctrl/py/fable_modules/siren/siren.py +1941 -0
- arctrl/py/fable_modules/siren/siren_types.py +1229 -0
- arctrl/py/fable_modules/siren/theme_variables.py +517 -0
- arctrl/py/fable_modules/siren/util.py +37 -0
- arctrl/py/fable_modules/siren/yaml.py +101 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +739 -0
- arctrl/py/fable_modules/yamlicious/regex.py +29 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +389 -0
- arctrl/py/license.py +169 -0
- arctrl/py/rocrate_io.py +242 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +212 -0
- arctrl/py/yaml.py +79 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0.dist-info/METADATA +157 -0
- arctrl-3.0.0.dist-info/RECORD +511 -0
- arctrl-3.0.0.dist-info/WHEEL +4 -0
- arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
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from __future__ import annotations
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from collections.abc import Callable
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from dataclasses import dataclass
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from typing import Any
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from ..fable_modules.fable_library.array_ import (iterate, map as map_1, filter as filter_1)
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from ..fable_modules.fable_library.char import (is_letter_or_digit, is_digit)
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from ..fable_modules.fable_library.list import of_array
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from ..fable_modules.fable_library.map import (of_seq, try_find)
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from ..fable_modules.fable_library.option import (default_arg, to_array as to_array_1, filter as filter_2, bind)
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from ..fable_modules.fable_library.reflection import (TypeInfo, bool_type, record_type)
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from ..fable_modules.fable_library.seq import (map, filter, exists, to_array, sort_by, choose, iterate as iterate_1)
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from ..fable_modules.fable_library.set import (empty, FSharpSet__Contains, FSharpSet__Add, of_array as of_array_1, of_seq as of_seq_1)
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from ..fable_modules.fable_library.string_ import (is_null_or_white_space, index_of_any, replace)
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from ..fable_modules.fable_library.types import (Record, Array)
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from ..fable_modules.fable_library.util import (equals, compare_primitives)
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from ..fable_modules.siren.siren import (flowchart, siren)
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from ..fable_modules.siren.siren_types import (Direction, Direction_reflection, FlowchartElement, SirenElement)
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from ..CWL.cwlprocessing_unit import CWLProcessingUnit
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from .builder import (build, build_with)
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from .build_options import WorkflowGraphBuildOptions
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from .graph_types import (NodeKind, WorkflowGraphNode, WorkflowGraphEdge, EdgeKind, WorkflowGraph, ProcessingUnitKind, EdgeKindModule_asKey, PortDirection)
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def _expr1501() -> TypeInfo:
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return record_type("ARCtrl.WorkflowGraph.WorkflowGraphVisualizationOptions", [], WorkflowGraphVisualizationOptions, lambda: [("Direction", Direction_reflection()), ("EnableStyling", bool_type), ("RenderContainsLinks", bool_type)])
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@dataclass(eq = False, repr = False, slots = True)
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class WorkflowGraphVisualizationOptions(Record):
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Direction: Direction
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EnableStyling: bool
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RenderContainsLinks: bool
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WorkflowGraphVisualizationOptions_reflection = _expr1501
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WorkflowGraphVisualizationOptionsModule_defaultOptions: WorkflowGraphVisualizationOptions = WorkflowGraphVisualizationOptions(Direction(1), True, False)
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WorkflowGraphSiren_mermaidSpecials: Array[str] = ["/", "\\", "[", "]", "{", "}", "(", ")", ">", "<", "|"]
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def WorkflowGraphSiren_sanitizeMermaidId(id: str) -> str:
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return "node"
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normalized: str
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chars: Array[str] = []
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def action(c: str, id: Any=id) -> None:
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(chars.append(c))
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iterate(action, list(id))
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def WorkflowGraphSiren_nodeToElement(node: WorkflowGraphNode) -> FlowchartElement:
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node_id: str = WorkflowGraphSiren_sanitizeMermaidId(node.Id)
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def WorkflowGraphSiren_tryGetStepRunLookup(graph: WorkflowGraph) -> Any:
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class ObjectExpr1508:
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@property
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def Compare(self) -> Callable[[str, str], int]:
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return compare_primitives
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return of_seq(map(mapping, filter(predicate, graph.Edges)), ObjectExpr1508())
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def WorkflowGraphSiren_addStyles(elements: Array[FlowchartElement], processing_unit_nodes: Array[WorkflowGraphNode], root_input_nodes: Array[WorkflowGraphNode], root_output_nodes: Array[WorkflowGraphNode]) -> None:
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def node_ids_by_predicate(predicate: Callable[[WorkflowGraphNode], bool], nodes: Array[WorkflowGraphNode], elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> Array[str]:
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def mapping(n: WorkflowGraphNode, predicate: Any=predicate, nodes: Any=nodes) -> str:
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return WorkflowGraphSiren_sanitizeMermaidId(n.Id)
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return map_1(mapping, filter_1(predicate, nodes), None)
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def _arrow1510(n_1: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> bool:
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return equals(n_1.Kind, NodeKind(0, ProcessingUnitKind(0)))
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workflow_ids: Array[str] = node_ids_by_predicate(_arrow1510, processing_unit_nodes)
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def _arrow1511(n_2: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> bool:
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return equals(n_2.Kind, NodeKind(0, ProcessingUnitKind(1)))
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tool_ids: Array[str] = node_ids_by_predicate(_arrow1511, processing_unit_nodes)
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def _arrow1512(n_3: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> bool:
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return equals(n_3.Kind, NodeKind(0, ProcessingUnitKind(2)))
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+
expression_ids: Array[str] = node_ids_by_predicate(_arrow1512, processing_unit_nodes)
|
|
151
|
+
def _arrow1513(n_4: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> bool:
|
|
152
|
+
return equals(n_4.Kind, NodeKind(0, ProcessingUnitKind(3)))
|
|
153
|
+
|
|
154
|
+
operation_ids: Array[str] = node_ids_by_predicate(_arrow1513, processing_unit_nodes)
|
|
155
|
+
def _arrow1514(n_5: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> bool:
|
|
156
|
+
return True if equals(n_5.Kind, NodeKind(0, ProcessingUnitKind(5))) else equals(n_5.Kind, NodeKind(0, ProcessingUnitKind(4)))
|
|
157
|
+
|
|
158
|
+
unresolved_ids: Array[str] = node_ids_by_predicate(_arrow1514, processing_unit_nodes)
|
|
159
|
+
def mapping_1(n_6: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> str:
|
|
160
|
+
return WorkflowGraphSiren_sanitizeMermaidId(n_6.Id)
|
|
161
|
+
|
|
162
|
+
input_ids: Array[str] = map_1(mapping_1, root_input_nodes, None)
|
|
163
|
+
def mapping_2(n_7: WorkflowGraphNode, elements: Any=elements, processing_unit_nodes: Any=processing_unit_nodes, root_input_nodes: Any=root_input_nodes, root_output_nodes: Any=root_output_nodes) -> str:
|
|
164
|
+
return WorkflowGraphSiren_sanitizeMermaidId(n_7.Id)
|
|
165
|
+
|
|
166
|
+
output_ids: Array[str] = map_1(mapping_2, root_output_nodes, None)
|
|
167
|
+
(elements.append(flowchart.class_def("wg_workflow", of_array([("fill", "#dff4ff"), ("stroke", "#246fa8"), ("stroke-width", "2px")]))))
|
|
168
|
+
(elements.append(flowchart.class_def("wg_tool", of_array([("fill", "#e8f5e9"), ("stroke", "#2e7d32"), ("stroke-width", "2px")]))))
|
|
169
|
+
(elements.append(flowchart.class_def("wg_expression", of_array([("fill", "#fff3e0"), ("stroke", "#e65100"), ("stroke-width", "2px")]))))
|
|
170
|
+
if len(operation_ids) > 0:
|
|
171
|
+
(elements.append(flowchart.class_def("wg_operation", of_array([("fill", "#ede7f6"), ("stroke", "#5e35b1"), ("stroke-width", "2px")]))))
|
|
172
|
+
|
|
173
|
+
(elements.append(flowchart.class_def("wg_unresolved", of_array([("fill", "#ffebee"), ("stroke", "#c62828"), ("stroke-width", "2px"), ("stroke-dasharray", "5 5")]))))
|
|
174
|
+
(elements.append(flowchart.class_def("wg_initial_input", of_array([("fill", "#e1f5fe"), ("stroke", "#0288d1"), ("stroke-width", "2px")]))))
|
|
175
|
+
(elements.append(flowchart.class_def("wg_final_output", of_array([("fill", "#f3e5f5"), ("stroke", "#7b1fa2"), ("stroke-width", "2px")]))))
|
|
176
|
+
if len(workflow_ids) > 0:
|
|
177
|
+
(elements.append(flowchart.class_(workflow_ids, "wg_workflow")))
|
|
178
|
+
|
|
179
|
+
if len(tool_ids) > 0:
|
|
180
|
+
(elements.append(flowchart.class_(tool_ids, "wg_tool")))
|
|
181
|
+
|
|
182
|
+
if len(expression_ids) > 0:
|
|
183
|
+
(elements.append(flowchart.class_(expression_ids, "wg_expression")))
|
|
184
|
+
|
|
185
|
+
if len(operation_ids) > 0:
|
|
186
|
+
(elements.append(flowchart.class_(operation_ids, "wg_operation")))
|
|
187
|
+
|
|
188
|
+
if len(unresolved_ids) > 0:
|
|
189
|
+
(elements.append(flowchart.class_(unresolved_ids, "wg_unresolved")))
|
|
190
|
+
|
|
191
|
+
if len(input_ids) > 0:
|
|
192
|
+
(elements.append(flowchart.class_(input_ids, "wg_initial_input")))
|
|
193
|
+
|
|
194
|
+
if len(output_ids) > 0:
|
|
195
|
+
(elements.append(flowchart.class_(output_ids, "wg_final_output")))
|
|
196
|
+
|
|
197
|
+
|
|
198
|
+
|
|
199
|
+
def WorkflowGraphSiren_fromGraphWithOptions(options: WorkflowGraphVisualizationOptions, graph: WorkflowGraph) -> SirenElement:
|
|
200
|
+
elements: Array[FlowchartElement] = []
|
|
201
|
+
class ObjectExpr1519:
|
|
202
|
+
@property
|
|
203
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
204
|
+
return compare_primitives
|
|
205
|
+
|
|
206
|
+
edge_keys: Any = empty(ObjectExpr1519())
|
|
207
|
+
def add_grouped_nodes(group_id: str, group_label: str, nodes: Array[WorkflowGraphNode], options: Any=options, graph: Any=graph) -> None:
|
|
208
|
+
if len(nodes) > 0:
|
|
209
|
+
grouped: Array[FlowchartElement] = []
|
|
210
|
+
def action(node: WorkflowGraphNode, group_id: Any=group_id, group_label: Any=group_label, nodes: Any=nodes) -> None:
|
|
211
|
+
(grouped.append(WorkflowGraphSiren_nodeToElement(node)))
|
|
212
|
+
|
|
213
|
+
iterate(action, nodes)
|
|
214
|
+
(elements.append(flowchart.subgraph_named(group_id, WorkflowGraphSiren_quoteMermaidLabel(group_label), grouped)))
|
|
215
|
+
|
|
216
|
+
|
|
217
|
+
def add_rendered_edge(kind: EdgeKind, source_node_id: str, target_node_id: str, label: str | None=None, options: Any=options, graph: Any=graph) -> None:
|
|
218
|
+
nonlocal edge_keys
|
|
219
|
+
label_key: str = default_arg(label, "")
|
|
220
|
+
key: str = ((((((("" + EdgeKindModule_asKey(kind)) + "::") + source_node_id) + "::") + target_node_id) + "::") + label_key) + ""
|
|
221
|
+
if not FSharpSet__Contains(edge_keys, key):
|
|
222
|
+
edge_keys = FSharpSet__Add(edge_keys, key)
|
|
223
|
+
src: str = WorkflowGraphSiren_sanitizeMermaidId(source_node_id)
|
|
224
|
+
tgt: str = WorkflowGraphSiren_sanitizeMermaidId(target_node_id)
|
|
225
|
+
def _arrow1522(__unit: None=None, kind: Any=kind, source_node_id: Any=source_node_id, target_node_id: Any=target_node_id, label: Any=label) -> FlowchartElement:
|
|
226
|
+
l_3: str = label
|
|
227
|
+
return flowchart.link_thick_arrow(src, tgt, WorkflowGraphSiren_quoteMermaidLabel(l_3))
|
|
228
|
+
|
|
229
|
+
def _arrow1523(__unit: None=None, kind: Any=kind, source_node_id: Any=source_node_id, target_node_id: Any=target_node_id, label: Any=label) -> FlowchartElement:
|
|
230
|
+
l_4: str = label
|
|
231
|
+
return flowchart.link_dotted_arrow(src, tgt, WorkflowGraphSiren_quoteMermaidLabel(l_4))
|
|
232
|
+
|
|
233
|
+
def _arrow1524(__unit: None=None, kind: Any=kind, source_node_id: Any=source_node_id, target_node_id: Any=target_node_id, label: Any=label) -> FlowchartElement:
|
|
234
|
+
l_5: str = label
|
|
235
|
+
return flowchart.link_arrow(src, tgt, WorkflowGraphSiren_quoteMermaidLabel(l_5))
|
|
236
|
+
|
|
237
|
+
link: FlowchartElement = ((_arrow1522() if (not is_null_or_white_space(label)) else flowchart.link_thick_arrow(src, tgt)) if (label is not None) else flowchart.link_thick_arrow(src, tgt)) if (kind.tag == 3) else (((_arrow1523() if (not is_null_or_white_space(label)) else flowchart.link_dotted_arrow(src, tgt)) if (label is not None) else flowchart.link_dotted_arrow(src, tgt)) if (kind.tag == 0) else ((_arrow1524() if (not is_null_or_white_space(label)) else flowchart.link_arrow(src, tgt)) if (label is not None) else flowchart.link_arrow(src, tgt)))
|
|
238
|
+
(elements.append(link))
|
|
239
|
+
|
|
240
|
+
|
|
241
|
+
def predicate(e: WorkflowGraphEdge, options: Any=options, graph: Any=graph) -> bool:
|
|
242
|
+
return equals(e.Kind, EdgeKind(1))
|
|
243
|
+
|
|
244
|
+
has_calls: bool = exists(predicate, graph.Edges)
|
|
245
|
+
def projection(n_2: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str:
|
|
246
|
+
return n_2.Id
|
|
247
|
+
|
|
248
|
+
def predicate_2(n_1: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> bool:
|
|
249
|
+
if has_calls:
|
|
250
|
+
return n_1.Id != graph.RootProcessingUnitNodeId
|
|
251
|
+
|
|
252
|
+
else:
|
|
253
|
+
return True
|
|
254
|
+
|
|
255
|
+
|
|
256
|
+
def predicate_1(n: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> bool:
|
|
257
|
+
if n.Kind.tag == 0:
|
|
258
|
+
return True
|
|
259
|
+
|
|
260
|
+
else:
|
|
261
|
+
return False
|
|
262
|
+
|
|
263
|
+
|
|
264
|
+
class ObjectExpr1525:
|
|
265
|
+
@property
|
|
266
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
267
|
+
return compare_primitives
|
|
268
|
+
|
|
269
|
+
processing_unit_nodes: Array[WorkflowGraphNode] = to_array(sort_by(projection, filter(predicate_2, filter(predicate_1, graph.Nodes)), ObjectExpr1525()))
|
|
270
|
+
def projection_1(n_4: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str:
|
|
271
|
+
return n_4.Id
|
|
272
|
+
|
|
273
|
+
def predicate_3(n_3: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> bool:
|
|
274
|
+
if equals(n_3.Kind, NodeKind(2, PortDirection(0))):
|
|
275
|
+
return equals(n_3.OwnerNodeId, graph.RootProcessingUnitNodeId)
|
|
276
|
+
|
|
277
|
+
else:
|
|
278
|
+
return False
|
|
279
|
+
|
|
280
|
+
|
|
281
|
+
class ObjectExpr1528:
|
|
282
|
+
@property
|
|
283
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
284
|
+
return compare_primitives
|
|
285
|
+
|
|
286
|
+
root_input_nodes: Array[WorkflowGraphNode] = to_array(sort_by(projection_1, filter(predicate_3, graph.Nodes), ObjectExpr1528()))
|
|
287
|
+
def projection_2(n_6: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str:
|
|
288
|
+
return n_6.Id
|
|
289
|
+
|
|
290
|
+
def predicate_4(n_5: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> bool:
|
|
291
|
+
if equals(n_5.Kind, NodeKind(2, PortDirection(1))):
|
|
292
|
+
return equals(n_5.OwnerNodeId, graph.RootProcessingUnitNodeId)
|
|
293
|
+
|
|
294
|
+
else:
|
|
295
|
+
return False
|
|
296
|
+
|
|
297
|
+
|
|
298
|
+
class ObjectExpr1530:
|
|
299
|
+
@property
|
|
300
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
301
|
+
return compare_primitives
|
|
302
|
+
|
|
303
|
+
root_output_nodes: Array[WorkflowGraphNode] = to_array(sort_by(projection_2, filter(predicate_4, graph.Nodes), ObjectExpr1530()))
|
|
304
|
+
def mapping(n_7: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str:
|
|
305
|
+
return n_7.Id
|
|
306
|
+
|
|
307
|
+
class ObjectExpr1531:
|
|
308
|
+
@property
|
|
309
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
310
|
+
return compare_primitives
|
|
311
|
+
|
|
312
|
+
processing_unit_node_ids: Any = of_array_1(map_1(mapping, processing_unit_nodes, None), ObjectExpr1531())
|
|
313
|
+
def mapping_1(n_8: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str:
|
|
314
|
+
return n_8.Id
|
|
315
|
+
|
|
316
|
+
class ObjectExpr1532:
|
|
317
|
+
@property
|
|
318
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
319
|
+
return compare_primitives
|
|
320
|
+
|
|
321
|
+
root_input_node_ids: Any = of_array_1(map_1(mapping_1, root_input_nodes, None), ObjectExpr1532())
|
|
322
|
+
def mapping_2(n_9: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str:
|
|
323
|
+
return n_9.Id
|
|
324
|
+
|
|
325
|
+
class ObjectExpr1533:
|
|
326
|
+
@property
|
|
327
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
328
|
+
return compare_primitives
|
|
329
|
+
|
|
330
|
+
root_output_node_ids: Any = of_array_1(map_1(mapping_2, root_output_nodes, None), ObjectExpr1533())
|
|
331
|
+
def chooser(n_10: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> str | None:
|
|
332
|
+
if equals(n_10.Kind, NodeKind(1)):
|
|
333
|
+
return n_10.Id
|
|
334
|
+
|
|
335
|
+
else:
|
|
336
|
+
return None
|
|
337
|
+
|
|
338
|
+
|
|
339
|
+
class ObjectExpr1535:
|
|
340
|
+
@property
|
|
341
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
342
|
+
return compare_primitives
|
|
343
|
+
|
|
344
|
+
step_node_ids: Any = of_seq_1(choose(chooser, graph.Nodes), ObjectExpr1535())
|
|
345
|
+
def mapping_3(n_12: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> tuple[str, WorkflowGraphNode]:
|
|
346
|
+
return (n_12.Id, n_12)
|
|
347
|
+
|
|
348
|
+
def predicate_6(n_11: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> bool:
|
|
349
|
+
if equals(n_11.Kind, NodeKind(2, PortDirection(0))):
|
|
350
|
+
def predicate_5(value_4: str, n_11: Any=n_11) -> bool:
|
|
351
|
+
return FSharpSet__Contains(step_node_ids, value_4)
|
|
352
|
+
|
|
353
|
+
return exists(predicate_5, to_array_1(n_11.OwnerNodeId))
|
|
354
|
+
|
|
355
|
+
else:
|
|
356
|
+
return False
|
|
357
|
+
|
|
358
|
+
|
|
359
|
+
class ObjectExpr1536:
|
|
360
|
+
@property
|
|
361
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
362
|
+
return compare_primitives
|
|
363
|
+
|
|
364
|
+
step_input_ports: Any = of_seq(map(mapping_3, filter(predicate_6, graph.Nodes)), ObjectExpr1536())
|
|
365
|
+
def mapping_4(n_14: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> tuple[str, WorkflowGraphNode]:
|
|
366
|
+
return (n_14.Id, n_14)
|
|
367
|
+
|
|
368
|
+
def predicate_8(n_13: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> bool:
|
|
369
|
+
if equals(n_13.Kind, NodeKind(2, PortDirection(1))):
|
|
370
|
+
def predicate_7(value_5: str, n_13: Any=n_13) -> bool:
|
|
371
|
+
return FSharpSet__Contains(step_node_ids, value_5)
|
|
372
|
+
|
|
373
|
+
return exists(predicate_7, to_array_1(n_13.OwnerNodeId))
|
|
374
|
+
|
|
375
|
+
else:
|
|
376
|
+
return False
|
|
377
|
+
|
|
378
|
+
|
|
379
|
+
class ObjectExpr1538:
|
|
380
|
+
@property
|
|
381
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
382
|
+
return compare_primitives
|
|
383
|
+
|
|
384
|
+
step_output_ports: Any = of_seq(map(mapping_4, filter(predicate_8, graph.Nodes)), ObjectExpr1538())
|
|
385
|
+
step_to_run: Any = WorkflowGraphSiren_tryGetStepRunLookup(graph)
|
|
386
|
+
def predicate_9(e_1: WorkflowGraphEdge, options: Any=options, graph: Any=graph) -> bool:
|
|
387
|
+
return equals(e_1.Kind, EdgeKind(0))
|
|
388
|
+
|
|
389
|
+
contains_step_edges: Array[WorkflowGraphEdge] = to_array(filter(predicate_9, graph.Edges))
|
|
390
|
+
def try_get_run_of_step(step_node_id: str, options: Any=options, graph: Any=graph) -> str | None:
|
|
391
|
+
def predicate_10(value_6: str, step_node_id: Any=step_node_id) -> bool:
|
|
392
|
+
return FSharpSet__Contains(processing_unit_node_ids, value_6)
|
|
393
|
+
|
|
394
|
+
return filter_2(predicate_10, try_find(step_node_id, step_to_run))
|
|
395
|
+
|
|
396
|
+
add_grouped_nodes("wg_initial_inputs", "Initial Inputs", root_input_nodes)
|
|
397
|
+
def action_1(arg: WorkflowGraphNode, options: Any=options, graph: Any=graph) -> None:
|
|
398
|
+
item: FlowchartElement = WorkflowGraphSiren_nodeToElement(arg)
|
|
399
|
+
(elements.append(item))
|
|
400
|
+
|
|
401
|
+
iterate(action_1, processing_unit_nodes)
|
|
402
|
+
add_grouped_nodes("wg_final_outputs", "Final Outputs", root_output_nodes)
|
|
403
|
+
if FSharpSet__Contains(processing_unit_node_ids, graph.RootProcessingUnitNodeId) if (not has_calls) else False:
|
|
404
|
+
for idx in range(0, (len(root_input_nodes) - 1) + 1, 1):
|
|
405
|
+
input_node: WorkflowGraphNode = root_input_nodes[idx]
|
|
406
|
+
add_rendered_edge(EdgeKind(2), input_node.Id, graph.RootProcessingUnitNodeId, input_node.Label)
|
|
407
|
+
for idx_1 in range(0, (len(root_output_nodes) - 1) + 1, 1):
|
|
408
|
+
add_rendered_edge(EdgeKind(4), graph.RootProcessingUnitNodeId, root_output_nodes[idx_1].Id, None)
|
|
409
|
+
|
|
410
|
+
def action_2(e_2: WorkflowGraphEdge, options: Any=options, graph: Any=graph) -> None:
|
|
411
|
+
if FSharpSet__Contains(processing_unit_node_ids, e_2.SourceNodeId):
|
|
412
|
+
match_value_2: str | None = try_get_run_of_step(e_2.TargetNodeId)
|
|
413
|
+
if match_value_2 is None:
|
|
414
|
+
pass
|
|
415
|
+
|
|
416
|
+
else:
|
|
417
|
+
add_rendered_edge(EdgeKind(0), e_2.SourceNodeId, match_value_2, None)
|
|
418
|
+
|
|
419
|
+
|
|
420
|
+
|
|
421
|
+
iterate(action_2, contains_step_edges)
|
|
422
|
+
def action_3(edge: WorkflowGraphEdge, options: Any=options, graph: Any=graph) -> None:
|
|
423
|
+
match_value_3: EdgeKind = edge.Kind
|
|
424
|
+
(pattern_matching_result,) = (None,)
|
|
425
|
+
if match_value_3.tag == 2:
|
|
426
|
+
if FSharpSet__Contains(root_input_node_ids, edge.SourceNodeId):
|
|
427
|
+
pattern_matching_result = 0
|
|
428
|
+
|
|
429
|
+
else:
|
|
430
|
+
pattern_matching_result = 3
|
|
431
|
+
|
|
432
|
+
|
|
433
|
+
elif match_value_3.tag == 3:
|
|
434
|
+
pattern_matching_result = 1
|
|
435
|
+
|
|
436
|
+
elif match_value_3.tag == 4:
|
|
437
|
+
if FSharpSet__Contains(root_output_node_ids, edge.TargetNodeId):
|
|
438
|
+
pattern_matching_result = 2
|
|
439
|
+
|
|
440
|
+
else:
|
|
441
|
+
pattern_matching_result = 3
|
|
442
|
+
|
|
443
|
+
|
|
444
|
+
else:
|
|
445
|
+
pattern_matching_result = 3
|
|
446
|
+
|
|
447
|
+
if pattern_matching_result == 0:
|
|
448
|
+
match_value_4: WorkflowGraphNode | None = try_find(edge.TargetNodeId, step_input_ports)
|
|
449
|
+
if match_value_4 is None:
|
|
450
|
+
pass
|
|
451
|
+
|
|
452
|
+
else:
|
|
453
|
+
target_port: WorkflowGraphNode = match_value_4
|
|
454
|
+
match_value_5: str | None = bind(try_get_run_of_step, target_port.OwnerNodeId)
|
|
455
|
+
if match_value_5 is None:
|
|
456
|
+
pass
|
|
457
|
+
|
|
458
|
+
else:
|
|
459
|
+
add_rendered_edge(EdgeKind(2), edge.SourceNodeId, match_value_5, target_port.Label)
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
|
|
463
|
+
elif pattern_matching_result == 1:
|
|
464
|
+
match_value: WorkflowGraphNode | None = try_find(edge.SourceNodeId, step_output_ports)
|
|
465
|
+
match_value_1: WorkflowGraphNode | None = try_find(edge.TargetNodeId, step_input_ports)
|
|
466
|
+
(pattern_matching_result_1, source_port, target_port_1) = (None, None, None)
|
|
467
|
+
if match_value is not None:
|
|
468
|
+
if match_value_1 is not None:
|
|
469
|
+
pattern_matching_result_1 = 0
|
|
470
|
+
source_port = match_value
|
|
471
|
+
target_port_1 = match_value_1
|
|
472
|
+
|
|
473
|
+
else:
|
|
474
|
+
pattern_matching_result_1 = 1
|
|
475
|
+
|
|
476
|
+
|
|
477
|
+
else:
|
|
478
|
+
pattern_matching_result_1 = 1
|
|
479
|
+
|
|
480
|
+
if pattern_matching_result_1 == 0:
|
|
481
|
+
match_value_2: str | None = bind(try_get_run_of_step, source_port.OwnerNodeId)
|
|
482
|
+
match_value_3: str | None = bind(try_get_run_of_step, target_port_1.OwnerNodeId)
|
|
483
|
+
(pattern_matching_result_2, consumer_run_id_1, producer_run_id) = (None, None, None)
|
|
484
|
+
if match_value_2 is not None:
|
|
485
|
+
if match_value_3 is not None:
|
|
486
|
+
pattern_matching_result_2 = 0
|
|
487
|
+
consumer_run_id_1 = match_value_3
|
|
488
|
+
producer_run_id = match_value_2
|
|
489
|
+
|
|
490
|
+
else:
|
|
491
|
+
pattern_matching_result_2 = 1
|
|
492
|
+
|
|
493
|
+
|
|
494
|
+
else:
|
|
495
|
+
pattern_matching_result_2 = 1
|
|
496
|
+
|
|
497
|
+
if pattern_matching_result_2 == 0:
|
|
498
|
+
add_rendered_edge(EdgeKind(3), producer_run_id, consumer_run_id_1, target_port_1.Label)
|
|
499
|
+
|
|
500
|
+
elif pattern_matching_result_2 == 1:
|
|
501
|
+
pass
|
|
502
|
+
|
|
503
|
+
|
|
504
|
+
elif pattern_matching_result_1 == 1:
|
|
505
|
+
pass
|
|
506
|
+
|
|
507
|
+
|
|
508
|
+
elif pattern_matching_result == 2:
|
|
509
|
+
match_value_8: WorkflowGraphNode | None = try_find(edge.SourceNodeId, step_output_ports)
|
|
510
|
+
if match_value_8 is None:
|
|
511
|
+
if FSharpSet__Contains(root_input_node_ids, edge.SourceNodeId):
|
|
512
|
+
add_rendered_edge(EdgeKind(4), edge.SourceNodeId, edge.TargetNodeId, None)
|
|
513
|
+
|
|
514
|
+
|
|
515
|
+
else:
|
|
516
|
+
match_value_9: str | None = bind(try_get_run_of_step, match_value_8.OwnerNodeId)
|
|
517
|
+
if match_value_9 is None:
|
|
518
|
+
pass
|
|
519
|
+
|
|
520
|
+
else:
|
|
521
|
+
add_rendered_edge(EdgeKind(4), match_value_9, edge.TargetNodeId, None)
|
|
522
|
+
|
|
523
|
+
|
|
524
|
+
|
|
525
|
+
elif pattern_matching_result == 3:
|
|
526
|
+
pass
|
|
527
|
+
|
|
528
|
+
|
|
529
|
+
def projection_3(e_3: WorkflowGraphEdge, options: Any=options, graph: Any=graph) -> str:
|
|
530
|
+
return e_3.Id
|
|
531
|
+
|
|
532
|
+
class ObjectExpr1540:
|
|
533
|
+
@property
|
|
534
|
+
def Compare(self) -> Callable[[str, str], int]:
|
|
535
|
+
return compare_primitives
|
|
536
|
+
|
|
537
|
+
iterate_1(action_3, sort_by(projection_3, graph.Edges, ObjectExpr1540()))
|
|
538
|
+
if options.EnableStyling:
|
|
539
|
+
WorkflowGraphSiren_addStyles(elements, processing_unit_nodes, root_input_nodes, root_output_nodes)
|
|
540
|
+
|
|
541
|
+
return siren.flowchart(options.Direction, elements)
|
|
542
|
+
|
|
543
|
+
|
|
544
|
+
def WorkflowGraphSiren_fromGraph(graph: WorkflowGraph) -> SirenElement:
|
|
545
|
+
return WorkflowGraphSiren_fromGraphWithOptions(WorkflowGraphVisualizationOptionsModule_defaultOptions, graph)
|
|
546
|
+
|
|
547
|
+
|
|
548
|
+
def WorkflowGraphSiren_fromProcessingUnit(processing_unit: CWLProcessingUnit) -> SirenElement:
|
|
549
|
+
return WorkflowGraphSiren_fromGraph(build(processing_unit))
|
|
550
|
+
|
|
551
|
+
|
|
552
|
+
def WorkflowGraphSiren_fromProcessingUnitResolved(build_options: WorkflowGraphBuildOptions, processing_unit: CWLProcessingUnit) -> SirenElement:
|
|
553
|
+
return WorkflowGraphSiren_fromGraph(build_with(build_options, processing_unit))
|
|
554
|
+
|
|
555
|
+
|
|
556
|
+
def WorkflowGraphSiren_toMermaidWithOptions(options: WorkflowGraphVisualizationOptions, graph: WorkflowGraph) -> str:
|
|
557
|
+
diagram: SirenElement = WorkflowGraphSiren_fromGraphWithOptions(options, graph)
|
|
558
|
+
return siren.write(diagram)
|
|
559
|
+
|
|
560
|
+
|
|
561
|
+
def WorkflowGraphSiren_toMermaid(graph: WorkflowGraph) -> str:
|
|
562
|
+
return WorkflowGraphSiren_toMermaidWithOptions(WorkflowGraphVisualizationOptionsModule_defaultOptions, graph)
|
|
563
|
+
|
|
564
|
+
|
|
565
|
+
def WorkflowGraphSiren_toMarkdownWithOptions(options: WorkflowGraphVisualizationOptions, graph: WorkflowGraph) -> str:
|
|
566
|
+
return ("```mermaid\n" + WorkflowGraphSiren_toMermaidWithOptions(options, graph)) + "\n```"
|
|
567
|
+
|
|
568
|
+
|
|
569
|
+
def WorkflowGraphSiren_toMarkdown(graph: WorkflowGraph) -> str:
|
|
570
|
+
return WorkflowGraphSiren_toMarkdownWithOptions(WorkflowGraphVisualizationOptionsModule_defaultOptions, graph)
|
|
571
|
+
|
|
572
|
+
|
|
573
|
+
__all__ = ["WorkflowGraphVisualizationOptions_reflection", "WorkflowGraphVisualizationOptionsModule_defaultOptions", "WorkflowGraphSiren_mermaidSpecials", "WorkflowGraphSiren_sanitizeMermaidId", "WorkflowGraphSiren_quoteMermaidLabel", "WorkflowGraphSiren_nodeToElement", "WorkflowGraphSiren_tryGetStepRunLookup", "WorkflowGraphSiren_addStyles", "WorkflowGraphSiren_fromGraphWithOptions", "WorkflowGraphSiren_fromGraph", "WorkflowGraphSiren_fromProcessingUnit", "WorkflowGraphSiren_fromProcessingUnitResolved", "WorkflowGraphSiren_toMermaidWithOptions", "WorkflowGraphSiren_toMermaid", "WorkflowGraphSiren_toMarkdownWithOptions", "WorkflowGraphSiren_toMarkdown"]
|
|
574
|
+
|