arctrl 3.0.0__py3-none-any.whl

arctrl/py/Json/context/rocrate/isa_source_context.py

@@ -0,0 +1,66 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.reflection import (TypeInfo, string_type, record_type)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.types import Record
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _expr2493() -> TypeInfo:
+    return record_type("ARCtrl.Json.ROCrateContext.Source.IContext", [], IContext, lambda: [("sdo", string_type), ("arc", string_type), ("Source", string_type), ("ArcSource", string_type), ("identifier", string_type), ("characteristics", string_type), ("name", string_type)])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class IContext(Record):
+    sdo: str
+    arc: str
+    Source: str
+    ArcSource: str
+    identifier: str
+    characteristics: str
+    name: str
+
+IContext_reflection = _expr2493
+
+def _arrow2500(__unit: None=None) -> IEncodable:
+    class ObjectExpr2494(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr2495(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("https://bioschemas.org/")
+
+    class ObjectExpr2496(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("bio:Sample")
+
+    class ObjectExpr2497(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:name")
+
+    class ObjectExpr2498(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("bio:additionalProperty")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr2494()), ("bio", ObjectExpr2495()), ("Source", ObjectExpr2496()), ("name", ObjectExpr2497()), ("characteristics", ObjectExpr2498())])
+    class ObjectExpr2499(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_5))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_5.encode_object(arg)
+
+    return ObjectExpr2499()
+
+
+context_jsonvalue: IEncodable = _arrow2500()
+
+context_str: str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Source\": \"sdo:Thing\",\r\n    \"ArcSource\": \"arc:ARC#ARC_00000071\",\r\n\r\n    \"identifier\": \"sdo:identifier\",\r\n\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\"\r\n  }\r\n}\r\n    "
+
+__all__ = ["IContext_reflection", "context_jsonvalue", "context_str"]
+

arctrl/py/Json/context/rocrate/isa_study_context.py

@@ -0,0 +1,125 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.reflection import (TypeInfo, string_type, record_type)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.types import Record
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _expr2501() -> TypeInfo:
+    return record_type("ARCtrl.Json.ROCrateContext.Study.IContext", [], IContext, lambda: [("sdo", string_type), ("arc", string_type), ("Study", string_type), ("ArcStudy", string_type), ("identifier", string_type), ("title", string_type), ("description", string_type), ("submission_date", string_type), ("public_release_date", string_type), ("publications", string_type), ("people", string_type), ("assays", string_type), ("filename", string_type), ("comments", string_type), ("protocols", string_type), ("materials", string_type), ("other_materials", string_type), ("sources", string_type), ("samples", string_type), ("process_sequence", string_type), ("factors", string_type), ("characteristic_categories", string_type), ("unit_categories", string_type), ("study_design_descriptors", string_type)])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class IContext(Record):
+    sdo: str
+    arc: str
+    Study: str
+    ArcStudy: str
+    identifier: str
+    title: str
+    description: str
+    submission_date: str
+    public_release_date: str
+    publications: str
+    people: str
+    assays: str
+    filename: str
+    comments: str
+    protocols: str
+    materials: str
+    other_materials: str
+    sources: str
+    samples: str
+    process_sequence: str
+    factors: str
+    characteristic_categories: str
+    unit_categories: str
+    study_design_descriptors: str
+
+IContext_reflection = _expr2501
+
+def _arrow2519(__unit: None=None) -> IEncodable:
+    class ObjectExpr2502(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr2503(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("sdo:Dataset")
+
+    class ObjectExpr2504(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("sdo:identifier")
+
+    class ObjectExpr2505(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:headline")
+
+    class ObjectExpr2506(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("sdo:additionalType")
+
+    class ObjectExpr2507(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_5.encode_string("sdo:description")
+
+    class ObjectExpr2508(IEncodable):
+        def Encode(self, helpers_6: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_6.encode_string("sdo:dateCreated")
+
+    class ObjectExpr2509(IEncodable):
+        def Encode(self, helpers_7: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_7.encode_string("sdo:datePublished")
+
+    class ObjectExpr2510(IEncodable):
+        def Encode(self, helpers_8: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_8.encode_string("sdo:citation")
+
+    class ObjectExpr2511(IEncodable):
+        def Encode(self, helpers_9: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_9.encode_string("sdo:creator")
+
+    class ObjectExpr2512(IEncodable):
+        def Encode(self, helpers_10: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_10.encode_string("sdo:hasPart")
+
+    class ObjectExpr2513(IEncodable):
+        def Encode(self, helpers_11: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_11.encode_string("sdo:hasPart")
+
+    class ObjectExpr2514(IEncodable):
+        def Encode(self, helpers_12: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_12.encode_string("sdo:alternateName")
+
+    class ObjectExpr2515(IEncodable):
+        def Encode(self, helpers_13: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_13.encode_string("sdo:comment")
+
+    class ObjectExpr2516(IEncodable):
+        def Encode(self, helpers_14: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_14.encode_string("sdo:about")
+
+    class ObjectExpr2517(IEncodable):
+        def Encode(self, helpers_15: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_15.encode_string("arc:ARC#ARC_00000037")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr2502()), ("Study", ObjectExpr2503()), ("identifier", ObjectExpr2504()), ("title", ObjectExpr2505()), ("additionalType", ObjectExpr2506()), ("description", ObjectExpr2507()), ("submissionDate", ObjectExpr2508()), ("publicReleaseDate", ObjectExpr2509()), ("publications", ObjectExpr2510()), ("people", ObjectExpr2511()), ("assays", ObjectExpr2512()), ("dataFiles", ObjectExpr2513()), ("filename", ObjectExpr2514()), ("comments", ObjectExpr2515()), ("processSequence", ObjectExpr2516()), ("studyDesignDescriptors", ObjectExpr2517())])
+    class ObjectExpr2518(IEncodable):
+        def Encode(self, helpers_16: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_16))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_16.encode_object(arg)
+
+    return ObjectExpr2518()
+
+
+context_jsonvalue: IEncodable = _arrow2519()
+
+__all__ = ["IContext_reflection", "context_jsonvalue"]
+

arctrl/py/Json/context/rocrate/property_value_context.py

@@ -0,0 +1,73 @@
+from __future__ import annotations
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _arrow2266(__unit: None=None) -> IEncodable:
+    class ObjectExpr2253(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr2254(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("sdo:additionalType")
+
+    class ObjectExpr2255(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("sdo:alternateName")
+
+    class ObjectExpr2256(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:measurementMethod")
+
+    class ObjectExpr2257(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("sdo:description")
+
+    class ObjectExpr2258(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_5.encode_string("sdo:name")
+
+    class ObjectExpr2259(IEncodable):
+        def Encode(self, helpers_6: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_6.encode_string("sdo:propertyID")
+
+    class ObjectExpr2260(IEncodable):
+        def Encode(self, helpers_7: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_7.encode_string("sdo:value")
+
+    class ObjectExpr2261(IEncodable):
+        def Encode(self, helpers_8: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_8.encode_string("sdo:valueReference")
+
+    class ObjectExpr2262(IEncodable):
+        def Encode(self, helpers_9: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_9.encode_string("sdo:unitText")
+
+    class ObjectExpr2263(IEncodable):
+        def Encode(self, helpers_10: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_10.encode_string("sdo:unitCode")
+
+    class ObjectExpr2264(IEncodable):
+        def Encode(self, helpers_11: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_11.encode_string("sdo:disambiguatingDescription")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr2253()), ("additionalType", ObjectExpr2254()), ("alternateName", ObjectExpr2255()), ("measurementMethod", ObjectExpr2256()), ("description", ObjectExpr2257()), ("category", ObjectExpr2258()), ("categoryCode", ObjectExpr2259()), ("value", ObjectExpr2260()), ("valueCode", ObjectExpr2261()), ("unit", ObjectExpr2262()), ("unitCode", ObjectExpr2263()), ("comments", ObjectExpr2264())])
+    class ObjectExpr2265(IEncodable):
+        def Encode(self, helpers_12: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_12))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_12.encode_object(arg)
+
+    return ObjectExpr2265()
+
+
+context_jsonvalue: IEncodable = _arrow2266()
+
+__all__ = ["context_jsonvalue"]
+

arctrl/py/Json/context/rocrate/rocrate_context.py

@@ -0,0 +1,81 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.reflection import (TypeInfo, string_type, record_type)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.types import Record
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _expr2520() -> TypeInfo:
+    return record_type("ARCtrl.Json.ROCrateContext.ROCrate.IContext", [], IContext, lambda: [("sdo", string_type), ("arc", string_type), ("CreativeWork", string_type), ("about", string_type), ("conforms_to", string_type)])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class IContext(Record):
+    sdo: str
+    arc: str
+    CreativeWork: str
+    about: str
+    conforms_to: str
+
+IContext_reflection = _expr2520
+
+def _arrow2523(__unit: None=None) -> IEncodable:
+    class ObjectExpr2521(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("https://w3id.org/ro/crate/1.1")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("@id", ObjectExpr2521())])
+    class ObjectExpr2522(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_1))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_1.encode_object(arg)
+
+    return ObjectExpr2522()
+
+
+conforms_to_jsonvalue: IEncodable = _arrow2523()
+
+def _arrow2531(__unit: None=None) -> IEncodable:
+    class ObjectExpr2524(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr2526(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("http://purl.org/nfdi4plants/ontology/")
+
+    class ObjectExpr2527(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("sdo:CreativeWork")
+
+    class ObjectExpr2528(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:about")
+
+    class ObjectExpr2529(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("http://purl.org/dc/terms/conformsTo")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr2524()), ("arc", ObjectExpr2526()), ("CreativeWork", ObjectExpr2527()), ("about", ObjectExpr2528()), ("conformsTo", ObjectExpr2529())])
+    class ObjectExpr2530(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_5))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_5.encode_object(arg)
+
+    return ObjectExpr2530()
+
+
+context_jsonvalue: IEncodable = _arrow2531()
+
+__all__ = ["IContext_reflection", "conforms_to_jsonvalue", "context_jsonvalue"]
+

arctrl/py/Json/converter_options.py

@@ -0,0 +1,23 @@
+from typing import Any
+from ..fable_modules.fable_library.reflection import (TypeInfo, union_type)
+from ..fable_modules.fable_library.types import (Array, Union)
+
+def _expr2525() -> TypeInfo:
+    return union_type("ARCtrl.Json.ConverterOptions", [], ConverterOptions, lambda: [[], [], []])
+
+
+class ConverterOptions(Union):
+    def __init__(self, tag: int, *fields: Any) -> None:
+        super().__init__()
+        self.tag: int = tag or 0
+        self.fields: Array[Any] = list(fields)
+
+    @staticmethod
+    def cases() -> list[str]:
+        return ["ARCtrl", "ROCrate", "ISAJson"]
+
+
+ConverterOptions_reflection = _expr2525
+
+__all__ = ["ConverterOptions_reflection"]
+