arctrl 3.0.0__py3-none-any.whl

arctrl/py/Json/Process/process.py

@@ -0,0 +1,296 @@
+from __future__ import annotations
+from collections.abc import Callable
+from typing import (Any, TypeVar)
+from ...fable_modules.fable_library.list import (choose, singleton, of_array, FSharpList)
+from ...fable_modules.fable_library.option import map
+from ...fable_modules.fable_library.seq import map as map_1
+from ...fable_modules.fable_library.string_ import replace
+from ...fable_modules.fable_library.util import IEnumerable_1
+from ...fable_modules.thoth_json_core.decode import (object, IOptionalGetter, string, list_1 as list_1_2, IGetters)
+from ...fable_modules.thoth_json_core.encode import list_1 as list_1_1
+from ...fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1, Decoder_1)
+from ...Core.comment import Comment
+from ...Core.Process.process import Process
+from ...Core.Process.process_input import ProcessInput
+from ...Core.Process.process_output import ProcessOutput
+from ...Core.Process.process_parameter_value import ProcessParameterValue
+from ...Core.Process.protocol import Protocol
+from ...Core.uri import URIModule_toString
+from ..comment import (ROCrate_encoder as ROCrate_encoder_5, ROCrate_decoder as ROCrate_decoder_5, ISAJson_encoder as ISAJson_encoder_5, ISAJson_decoder as ISAJson_decoder_5)
+from ..context.rocrate.isa_process_context import context_jsonvalue
+from ..decode import Decode_uri
+from ..encode import (try_include, try_include_list_opt)
+from ..idtable import encode
+from ..person import (ROCrate_encodeAuthorListString, ROCrate_decodeAuthorListString)
+from .process_input import (ROCrate_encoder as ROCrate_encoder_3, ROCrate_decoder as ROCrate_decoder_3, ISAJson_encoder as ISAJson_encoder_3, ISAJson_decoder as ISAJson_decoder_3)
+from .process_output import (ROCrate_encoder as ROCrate_encoder_4, ROCrate_decoder as ROCrate_decoder_4, ISAJson_encoder as ISAJson_encoder_4, ISAJson_decoder as ISAJson_decoder_4)
+from .process_parameter_value import (ROCrate_encoder as ROCrate_encoder_2, ROCrate_decoder as ROCrate_decoder_2, ISAJson_encoder as ISAJson_encoder_2, ISAJson_decoder as ISAJson_decoder_2)
+from .protocol import (ROCrate_encoder as ROCrate_encoder_1, ROCrate_decoder as ROCrate_decoder_1, ISAJson_encoder as ISAJson_encoder_1, ISAJson_decoder as ISAJson_decoder_1)
+
+__A_ = TypeVar("__A_")
+
+def ROCrate_genID(p: Process) -> str:
+    match_value: str | None = p.ID
+    if match_value is None:
+        match_value_1: str | None = p.Name
+        if match_value_1 is None:
+            return "#EmptyProcess"
+
+        else: 
+            return "#Process_" + replace(match_value_1, " ", "_")
+
+
+    else: 
+        return URIModule_toString(match_value)
+
+
+
+def ROCrate_encoder(study_name: str | None, assay_name: str | None, oa: Process) -> IEncodable:
+    def chooser(tupled_arg: tuple[str, IEncodable | None], study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> tuple[str, IEncodable] | None:
+        def mapping(v_1: IEncodable, tupled_arg: Any=tupled_arg) -> tuple[str, IEncodable]:
+            return (tupled_arg[0], v_1)
+
+        return map(mapping, tupled_arg[1])
+
+    def _arrow3355(__unit: None=None, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        value: str = ROCrate_genID(oa)
+        class ObjectExpr3354(IEncodable):
+            def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+                return helpers.encode_string(value)
+
+        return ObjectExpr3354()
+
+    class ObjectExpr3356(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any], study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> Any:
+            return helpers_1.encode_string("Process")
+
+    def _arrow3358(value_2: str, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        class ObjectExpr3357(IEncodable):
+            def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+                return helpers_2.encode_string(value_2)
+
+        return ObjectExpr3357()
+
+    def _arrow3359(oa_1: Protocol, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        return ROCrate_encoder_1(study_name, assay_name, oa.Name, oa_1)
+
+    def _arrow3360(author_list: str, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        return ROCrate_encodeAuthorListString(author_list)
+
+    def _arrow3362(value_4: str, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        class ObjectExpr3361(IEncodable):
+            def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+                return helpers_3.encode_string(value_4)
+
+        return ObjectExpr3361()
+
+    def _arrow3363(value_6: ProcessInput, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        return ROCrate_encoder_3(value_6)
+
+    def _arrow3364(value_7: ProcessOutput, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        return ROCrate_encoder_4(value_7)
+
+    def _arrow3365(comment: Comment, study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> IEncodable:
+        return ROCrate_encoder_5(comment)
+
+    values: FSharpList[tuple[str, IEncodable]] = choose(chooser, of_array([("@id", _arrow3355()), ("@type", list_1_1(singleton(ObjectExpr3356()))), try_include("name", _arrow3358, oa.Name), try_include("executesProtocol", _arrow3359, oa.ExecutesProtocol), try_include_list_opt("parameterValues", ROCrate_encoder_2, oa.ParameterValues), try_include("performer", _arrow3360, oa.Performer), try_include("date", _arrow3362, oa.Date), try_include_list_opt("inputs", _arrow3363, oa.Inputs), try_include_list_opt("outputs", _arrow3364, oa.Outputs), try_include_list_opt("comments", _arrow3365, oa.Comments), ("@context", context_jsonvalue)]))
+    class ObjectExpr3366(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any], study_name: Any=study_name, assay_name: Any=assay_name, oa: Any=oa) -> Any:
+            def mapping_1(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers_4))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map_1(mapping_1, values)
+            return helpers_4.encode_object(arg)
+
+    return ObjectExpr3366()
+
+
+def _arrow3376(get: IGetters) -> Process:
+    def _arrow3367(__unit: None=None) -> str | None:
+        object_arg: IOptionalGetter = get.Optional
+        return object_arg.Field("@id", Decode_uri)
+
+    def _arrow3368(__unit: None=None) -> str | None:
+        object_arg_1: IOptionalGetter = get.Optional
+        return object_arg_1.Field("name", string)
+
+    def _arrow3369(__unit: None=None) -> Protocol | None:
+        object_arg_2: IOptionalGetter = get.Optional
+        return object_arg_2.Field("executesProtocol", ROCrate_decoder_1)
+
+    def _arrow3370(__unit: None=None) -> FSharpList[ProcessParameterValue] | None:
+        arg_7: Decoder_1[FSharpList[ProcessParameterValue]] = list_1_2(ROCrate_decoder_2)
+        object_arg_3: IOptionalGetter = get.Optional
+        return object_arg_3.Field("parameterValues", arg_7)
+
+    def _arrow3371(__unit: None=None) -> str | None:
+        object_arg_4: IOptionalGetter = get.Optional
+        return object_arg_4.Field("performer", ROCrate_decodeAuthorListString)
+
+    def _arrow3372(__unit: None=None) -> str | None:
+        object_arg_5: IOptionalGetter = get.Optional
+        return object_arg_5.Field("date", string)
+
+    def _arrow3373(__unit: None=None) -> FSharpList[ProcessInput] | None:
+        arg_13: Decoder_1[FSharpList[ProcessInput]] = list_1_2(ROCrate_decoder_3)
+        object_arg_6: IOptionalGetter = get.Optional
+        return object_arg_6.Field("inputs", arg_13)
+
+    def _arrow3374(__unit: None=None) -> FSharpList[ProcessOutput] | None:
+        arg_15: Decoder_1[FSharpList[ProcessOutput]] = list_1_2(ROCrate_decoder_4)
+        object_arg_7: IOptionalGetter = get.Optional
+        return object_arg_7.Field("outputs", arg_15)
+
+    def _arrow3375(__unit: None=None) -> FSharpList[Comment] | None:
+        arg_17: Decoder_1[FSharpList[Comment]] = list_1_2(ROCrate_decoder_5)
+        object_arg_8: IOptionalGetter = get.Optional
+        return object_arg_8.Field("comments", arg_17)
+
+    return Process(_arrow3367(), _arrow3368(), _arrow3369(), _arrow3370(), _arrow3371(), _arrow3372(), None, None, _arrow3373(), _arrow3374(), _arrow3375())
+
+
+ROCrate_decoder: Decoder_1[Process] = object(_arrow3376)
+
+def ISAJson_encoder(study_name: str | None, assay_name: str | None, id_map: Any | None, oa: Process) -> IEncodable:
+    def f(oa_1: Process, study_name: Any=study_name, assay_name: Any=assay_name, id_map: Any=id_map, oa: Any=oa) -> IEncodable:
+        def chooser(tupled_arg: tuple[str, IEncodable | None], oa_1: Any=oa_1) -> tuple[str, IEncodable] | None:
+            def mapping(v_1: IEncodable, tupled_arg: Any=tupled_arg) -> tuple[str, IEncodable]:
+                return (tupled_arg[0], v_1)
+
+            return map(mapping, tupled_arg[1])
+
+        def _arrow3380(value: str, oa_1: Any=oa_1) -> IEncodable:
+            class ObjectExpr3379(IEncodable):
+                def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+                    return helpers.encode_string(value)
+
+            return ObjectExpr3379()
+
+        def _arrow3382(value_2: str, oa_1: Any=oa_1) -> IEncodable:
+            class ObjectExpr3381(IEncodable):
+                def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+                    return helpers_1.encode_string(value_2)
+
+            return ObjectExpr3381()
+
+        def _arrow3383(oa_2: Protocol, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder_1(study_name, assay_name, oa_1.Name, id_map, oa_2)
+
+        def _arrow3384(oa_3: ProcessParameterValue, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder_2(id_map, oa_3)
+
+        def _arrow3386(value_4: str, oa_1: Any=oa_1) -> IEncodable:
+            class ObjectExpr3385(IEncodable):
+                def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+                    return helpers_2.encode_string(value_4)
+
+            return ObjectExpr3385()
+
+        def _arrow3388(value_6: str, oa_1: Any=oa_1) -> IEncodable:
+            class ObjectExpr3387(IEncodable):
+                def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+                    return helpers_3.encode_string(value_6)
+
+            return ObjectExpr3387()
+
+        def _arrow3389(oa_4: Process, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder(study_name, assay_name, id_map, oa_4)
+
+        def _arrow3390(oa_5: Process, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder(study_name, assay_name, id_map, oa_5)
+
+        def _arrow3391(value_8: ProcessInput, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder_3(id_map, value_8)
+
+        def _arrow3392(value_9: ProcessOutput, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder_4(id_map, value_9)
+
+        def _arrow3393(comment: Comment, oa_1: Any=oa_1) -> IEncodable:
+            return ISAJson_encoder_5(id_map, comment)
+
+        values: FSharpList[tuple[str, IEncodable]] = choose(chooser, of_array([try_include("@id", _arrow3380, ROCrate_genID(oa_1)), try_include("name", _arrow3382, oa_1.Name), try_include("executesProtocol", _arrow3383, oa_1.ExecutesProtocol), try_include_list_opt("parameterValues", _arrow3384, oa_1.ParameterValues), try_include("performer", _arrow3386, oa_1.Performer), try_include("date", _arrow3388, oa_1.Date), try_include("previousProcess", _arrow3389, oa_1.PreviousProcess), try_include("nextProcess", _arrow3390, oa_1.NextProcess), try_include_list_opt("inputs", _arrow3391, oa_1.Inputs), try_include_list_opt("outputs", _arrow3392, oa_1.Outputs), try_include_list_opt("comments", _arrow3393, oa_1.Comments)]))
+        class ObjectExpr3394(IEncodable):
+            def Encode(self, helpers_4: IEncoderHelpers_1[Any], oa_1: Any=oa_1) -> Any:
+                def mapping_1(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                    return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers_4))
+
+                arg: IEnumerable_1[tuple[str, __A_]] = map_1(mapping_1, values)
+                return helpers_4.encode_object(arg)
+
+        return ObjectExpr3394()
+
+    if id_map is not None:
+        def _arrow3395(p: Process, study_name: Any=study_name, assay_name: Any=assay_name, id_map: Any=id_map, oa: Any=oa) -> str:
+            return ROCrate_genID(p)
+
+        return encode(_arrow3395, f, oa, id_map)
+
+    else: 
+        return f(oa)
+
+
+
+def _arrow3408(__unit: None=None) -> Decoder_1[Process]:
+    def decode(__unit: None=None) -> Decoder_1[Process]:
+        def _arrow3407(get: IGetters) -> Process:
+            def _arrow3396(__unit: None=None) -> str | None:
+                object_arg: IOptionalGetter = get.Optional
+                return object_arg.Field("@id", Decode_uri)
+
+            def _arrow3397(__unit: None=None) -> str | None:
+                object_arg_1: IOptionalGetter = get.Optional
+                return object_arg_1.Field("name", string)
+
+            def _arrow3398(__unit: None=None) -> Protocol | None:
+                object_arg_2: IOptionalGetter = get.Optional
+                return object_arg_2.Field("executesProtocol", ISAJson_decoder_1)
+
+            def _arrow3399(__unit: None=None) -> FSharpList[ProcessParameterValue] | None:
+                arg_7: Decoder_1[FSharpList[ProcessParameterValue]] = list_1_2(ISAJson_decoder_2)
+                object_arg_3: IOptionalGetter = get.Optional
+                return object_arg_3.Field("parameterValues", arg_7)
+
+            def _arrow3400(__unit: None=None) -> str | None:
+                object_arg_4: IOptionalGetter = get.Optional
+                return object_arg_4.Field("performer", string)
+
+            def _arrow3401(__unit: None=None) -> str | None:
+                object_arg_5: IOptionalGetter = get.Optional
+                return object_arg_5.Field("date", string)
+
+            def _arrow3402(__unit: None=None) -> Process | None:
+                arg_13: Decoder_1[Process] = decode(None)
+                object_arg_6: IOptionalGetter = get.Optional
+                return object_arg_6.Field("previousProcess", arg_13)
+
+            def _arrow3403(__unit: None=None) -> Process | None:
+                arg_15: Decoder_1[Process] = decode(None)
+                object_arg_7: IOptionalGetter = get.Optional
+                return object_arg_7.Field("nextProcess", arg_15)
+
+            def _arrow3404(__unit: None=None) -> FSharpList[ProcessInput] | None:
+                arg_17: Decoder_1[FSharpList[ProcessInput]] = list_1_2(ISAJson_decoder_3)
+                object_arg_8: IOptionalGetter = get.Optional
+                return object_arg_8.Field("inputs", arg_17)
+
+            def _arrow3405(__unit: None=None) -> FSharpList[ProcessOutput] | None:
+                arg_19: Decoder_1[FSharpList[ProcessOutput]] = list_1_2(ISAJson_decoder_4)
+                object_arg_9: IOptionalGetter = get.Optional
+                return object_arg_9.Field("outputs", arg_19)
+
+            def _arrow3406(__unit: None=None) -> FSharpList[Comment] | None:
+                arg_21: Decoder_1[FSharpList[Comment]] = list_1_2(ISAJson_decoder_5)
+                object_arg_10: IOptionalGetter = get.Optional
+                return object_arg_10.Field("comments", arg_21)
+
+            return Process(_arrow3396(), _arrow3397(), _arrow3398(), _arrow3399(), _arrow3400(), _arrow3401(), _arrow3402(), _arrow3403(), _arrow3404(), _arrow3405(), _arrow3406())
+
+        return object(_arrow3407)
+
+    return decode(None)
+
+
+ISAJson_decoder: Decoder_1[Process] = _arrow3408()
+
+__all__ = ["ROCrate_genID", "ROCrate_encoder", "ROCrate_decoder", "ISAJson_encoder", "ISAJson_decoder"]
+

arctrl/py/Json/Process/process_input.py

@@ -0,0 +1,83 @@
+from __future__ import annotations
+from typing import Any
+from ...fable_modules.fable_library.list import of_array
+from ...fable_modules.thoth_json_core.decode import (one_of, map)
+from ...fable_modules.thoth_json_core.types import (IEncodable, Decoder_1)
+from ...Core.data import Data
+from ...Core.Process.material import Material
+from ...Core.Process.process_input import ProcessInput
+from ...Core.Process.sample import Sample
+from ...Core.Process.source import Source
+from ..data import (ROCrate_encoder as ROCrate_encoder_2, ROCrate_decoder as ROCrate_decoder_3, ISAJson_encoder as ISAJson_encoder_2, ISAJson_decoder as ISAJson_decoder_3)
+from .material import (ROCrate_encoder as ROCrate_encoder_3, ROCrate_decoder as ROCrate_decoder_4, ISAJson_encoder as ISAJson_encoder_3, ISAJson_decoder as ISAJson_decoder_4)
+from .sample import (ROCrate_encoder as ROCrate_encoder_1, ROCrate_decoder as ROCrate_decoder_1, ISAJson_encoder as ISAJson_encoder_1, ISAJson_decoder as ISAJson_decoder_2)
+from .source import (ROCrate_encoder as ROCrate_encoder_4, ROCrate_decoder as ROCrate_decoder_2, ISAJson_encoder as ISAJson_encoder_4, ISAJson_decoder as ISAJson_decoder_1)
+
+def ROCrate_encoder(value: ProcessInput) -> IEncodable:
+    if value.tag == 1:
+        return ROCrate_encoder_1(value.fields[0])
+
+    elif value.tag == 2:
+        return ROCrate_encoder_2(value.fields[0])
+
+    elif value.tag == 3:
+        return ROCrate_encoder_3(value.fields[0])
+
+    else: 
+        return ROCrate_encoder_4(value.fields[0])
+
+
+
+def _arrow3315(Item: Sample) -> ProcessInput:
+    return ProcessInput(1, Item)
+
+
+def _arrow3316(Item_1: Source) -> ProcessInput:
+    return ProcessInput(0, Item_1)
+
+
+def _arrow3319(Item_2: Data) -> ProcessInput:
+    return ProcessInput(2, Item_2)
+
+
+def _arrow3321(Item_3: Material) -> ProcessInput:
+    return ProcessInput(3, Item_3)
+
+
+ROCrate_decoder: Decoder_1[ProcessInput] = one_of(of_array([map(_arrow3315, ROCrate_decoder_1), map(_arrow3316, ROCrate_decoder_2), map(_arrow3319, ROCrate_decoder_3), map(_arrow3321, ROCrate_decoder_4)]))
+
+def ISAJson_encoder(id_map: Any | None, value: ProcessInput) -> IEncodable:
+    if value.tag == 1:
+        return ISAJson_encoder_1(id_map, value.fields[0])
+
+    elif value.tag == 2:
+        return ISAJson_encoder_2(id_map, value.fields[0])
+
+    elif value.tag == 3:
+        return ISAJson_encoder_3(id_map, value.fields[0])
+
+    else: 
+        return ISAJson_encoder_4(id_map, value.fields[0])
+
+
+
+def _arrow3324(Item: Source) -> ProcessInput:
+    return ProcessInput(0, Item)
+
+
+def _arrow3325(Item_1: Sample) -> ProcessInput:
+    return ProcessInput(1, Item_1)
+
+
+def _arrow3326(Item_2: Data) -> ProcessInput:
+    return ProcessInput(2, Item_2)
+
+
+def _arrow3328(Item_3: Material) -> ProcessInput:
+    return ProcessInput(3, Item_3)
+
+
+ISAJson_decoder: Decoder_1[ProcessInput] = one_of(of_array([map(_arrow3324, ISAJson_decoder_1), map(_arrow3325, ISAJson_decoder_2), map(_arrow3326, ISAJson_decoder_3), map(_arrow3328, ISAJson_decoder_4)]))
+
+__all__ = ["ROCrate_encoder", "ROCrate_decoder", "ISAJson_encoder", "ISAJson_decoder"]
+

arctrl/py/Json/Process/process_output.py

@@ -0,0 +1,67 @@
+from __future__ import annotations
+from typing import Any
+from ...fable_modules.fable_library.list import of_array
+from ...fable_modules.thoth_json_core.decode import (one_of, map)
+from ...fable_modules.thoth_json_core.types import (IEncodable, Decoder_1)
+from ...Core.data import Data
+from ...Core.Process.material import Material
+from ...Core.Process.process_output import ProcessOutput
+from ...Core.Process.sample import Sample
+from ..data import (ROCrate_encoder as ROCrate_encoder_1, ROCrate_decoder as ROCrate_decoder_2, ISAJson_encoder as ISAJson_encoder_1, ISAJson_decoder as ISAJson_decoder_2)
+from .material import (ROCrate_encoder as ROCrate_encoder_2, ROCrate_decoder as ROCrate_decoder_3, ISAJson_encoder as ISAJson_encoder_2, ISAJson_decoder as ISAJson_decoder_3)
+from .sample import (ROCrate_encoder as ROCrate_encoder_3, ROCrate_decoder as ROCrate_decoder_1, ISAJson_encoder as ISAJson_encoder_3, ISAJson_decoder as ISAJson_decoder_1)
+
+def ROCrate_encoder(value: ProcessOutput) -> IEncodable:
+    if value.tag == 1:
+        return ROCrate_encoder_1(value.fields[0])
+
+    elif value.tag == 2:
+        return ROCrate_encoder_2(value.fields[0])
+
+    else: 
+        return ROCrate_encoder_3(value.fields[0])
+
+
+
+def _arrow3336(Item: Sample) -> ProcessOutput:
+    return ProcessOutput(0, Item)
+
+
+def _arrow3337(Item_1: Data) -> ProcessOutput:
+    return ProcessOutput(1, Item_1)
+
+
+def _arrow3338(Item_2: Material) -> ProcessOutput:
+    return ProcessOutput(2, Item_2)
+
+
+ROCrate_decoder: Decoder_1[ProcessOutput] = one_of(of_array([map(_arrow3336, ROCrate_decoder_1), map(_arrow3337, ROCrate_decoder_2), map(_arrow3338, ROCrate_decoder_3)]))
+
+def ISAJson_encoder(id_map: Any | None, value: ProcessOutput) -> IEncodable:
+    if value.tag == 1:
+        return ISAJson_encoder_1(id_map, value.fields[0])
+
+    elif value.tag == 2:
+        return ISAJson_encoder_2(id_map, value.fields[0])
+
+    else: 
+        return ISAJson_encoder_3(id_map, value.fields[0])
+
+
+
+def _arrow3340(Item: Sample) -> ProcessOutput:
+    return ProcessOutput(0, Item)
+
+
+def _arrow3341(Item_1: Data) -> ProcessOutput:
+    return ProcessOutput(1, Item_1)
+
+
+def _arrow3342(Item_2: Material) -> ProcessOutput:
+    return ProcessOutput(2, Item_2)
+
+
+ISAJson_decoder: Decoder_1[ProcessOutput] = one_of(of_array([map(_arrow3340, ISAJson_decoder_1), map(_arrow3341, ISAJson_decoder_2), map(_arrow3342, ISAJson_decoder_3)]))
+
+__all__ = ["ROCrate_encoder", "ROCrate_decoder", "ISAJson_encoder", "ISAJson_decoder"]
+

arctrl/py/Json/Process/process_parameter_value.py

@@ -0,0 +1,81 @@
+from __future__ import annotations
+from collections.abc import Callable
+from typing import (Any, TypeVar)
+from ...fable_modules.fable_library.list import (choose, of_array, FSharpList)
+from ...fable_modules.fable_library.option import map
+from ...fable_modules.fable_library.seq import map as map_1
+from ...fable_modules.fable_library.util import IEnumerable_1
+from ...fable_modules.thoth_json_core.decode import (object, IOptionalGetter, IGetters)
+from ...fable_modules.thoth_json_core.types import (IEncodable, Decoder_1, IEncoderHelpers_1)
+from ...Core.ontology_annotation import OntologyAnnotation
+from ...Core.Process.process_parameter_value import ProcessParameterValue
+from ...Core.Process.protocol_parameter import ProtocolParameter
+from ...Core.value import Value
+from ..encode import try_include
+from ..ontology_annotation import (OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ISAJson_decoder)
+from ..property_value import (encoder, decoder)
+from .protocol_parameter import (ISAJson_encoder as ISAJson_encoder_1, ISAJson_decoder as ISAJson_decoder_1)
+from .value import (encoder as encoder_1, decoder as decoder_1)
+
+__A_ = TypeVar("__A_")
+
+ROCrate_encoder: Callable[[ProcessParameterValue], IEncodable] = encoder
+
+def _arrow3282(alternate_name: str | None=None, measurement_method: str | None=None, description: str | None=None, category: OntologyAnnotation | None=None, value: Value | None=None, unit: OntologyAnnotation | None=None) -> ProcessParameterValue:
+    return ProcessParameterValue.create_as_pv(alternate_name, measurement_method, description, category, value, unit)
+
+
+ROCrate_decoder: Decoder_1[ProcessParameterValue] = decoder(_arrow3282)
+
+def ISAJson_genID(oa: ProcessParameterValue) -> Any:
+    raise Exception("Not implemented")
+
+
+def ISAJson_encoder(id_map: Any | None, oa: ProcessParameterValue) -> IEncodable:
+    def chooser(tupled_arg: tuple[str, IEncodable | None], id_map: Any=id_map, oa: Any=oa) -> tuple[str, IEncodable] | None:
+        def mapping(v_1: IEncodable, tupled_arg: Any=tupled_arg) -> tuple[str, IEncodable]:
+            return (tupled_arg[0], v_1)
+
+        return map(mapping, tupled_arg[1])
+
+    def _arrow3284(value: ProtocolParameter, id_map: Any=id_map, oa: Any=oa) -> IEncodable:
+        return ISAJson_encoder_1(id_map, value)
+
+    def _arrow3285(value_1: Value, id_map: Any=id_map, oa: Any=oa) -> IEncodable:
+        return encoder_1(id_map, value_1)
+
+    def _arrow3286(oa_1: OntologyAnnotation, id_map: Any=id_map, oa: Any=oa) -> IEncodable:
+        return OntologyAnnotation_ISAJson_encoder(id_map, oa_1)
+
+    values: FSharpList[tuple[str, IEncodable]] = choose(chooser, of_array([try_include("category", _arrow3284, oa.Category), try_include("value", _arrow3285, oa.Value), try_include("unit", _arrow3286, oa.Unit)]))
+    class ObjectExpr3287(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any], id_map: Any=id_map, oa: Any=oa) -> Any:
+            def mapping_1(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map_1(mapping_1, values)
+            return helpers.encode_object(arg)
+
+    return ObjectExpr3287()
+
+
+def _arrow3291(get: IGetters) -> ProcessParameterValue:
+    def _arrow3288(__unit: None=None) -> ProtocolParameter | None:
+        object_arg: IOptionalGetter = get.Optional
+        return object_arg.Field("category", ISAJson_decoder_1)
+
+    def _arrow3289(__unit: None=None) -> Value | None:
+        object_arg_1: IOptionalGetter = get.Optional
+        return object_arg_1.Field("value", decoder_1)
+
+    def _arrow3290(__unit: None=None) -> OntologyAnnotation | None:
+        object_arg_2: IOptionalGetter = get.Optional
+        return object_arg_2.Field("unit", OntologyAnnotation_ISAJson_decoder)
+
+    return ProcessParameterValue(_arrow3288(), _arrow3289(), _arrow3290())
+
+
+ISAJson_decoder: Decoder_1[ProcessParameterValue] = object(_arrow3291)
+
+__all__ = ["ROCrate_encoder", "ROCrate_decoder", "ISAJson_genID", "ISAJson_encoder", "ISAJson_decoder"]
+