arctrl 3.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (511) hide show
  1. arctrl/__init__.py +23 -0
  2. arctrl/cwl.py +12 -0
  3. arctrl/py/CWL/__init__.py +0 -0
  4. arctrl/py/CWL/cwlprocessing_unit.py +221 -0
  5. arctrl/py/CWL/cwltypes.py +364 -0
  6. arctrl/py/CWL/decode.py +3532 -0
  7. arctrl/py/CWL/encode.py +1905 -0
  8. arctrl/py/CWL/expression_tool_description.py +192 -0
  9. arctrl/py/CWL/hash_helpers.py +60 -0
  10. arctrl/py/CWL/inputs.py +122 -0
  11. arctrl/py/CWL/operation_description.py +169 -0
  12. arctrl/py/CWL/outputs.py +171 -0
  13. arctrl/py/CWL/parameter_reference.py +74 -0
  14. arctrl/py/CWL/requirements.py +350 -0
  15. arctrl/py/CWL/tool_description.py +192 -0
  16. arctrl/py/CWL/workflow_description.py +181 -0
  17. arctrl/py/CWL/workflow_steps.py +354 -0
  18. arctrl/py/Contract/__init__.py +0 -0
  19. arctrl/py/Contract/arc.py +89 -0
  20. arctrl/py/Contract/arc_assay.py +125 -0
  21. arctrl/py/Contract/arc_investigation.py +88 -0
  22. arctrl/py/Contract/arc_run.py +291 -0
  23. arctrl/py/Contract/arc_study.py +126 -0
  24. arctrl/py/Contract/arc_workflow.py +213 -0
  25. arctrl/py/Contract/contract.py +153 -0
  26. arctrl/py/Contract/datamap.py +396 -0
  27. arctrl/py/Contract/git.py +116 -0
  28. arctrl/py/Contract/license.py +58 -0
  29. arctrl/py/Contract/validation_packages_config.py +107 -0
  30. arctrl/py/ContractIO/__init__.py +0 -0
  31. arctrl/py/ContractIO/contract_io.py +350 -0
  32. arctrl/py/ContractIO/file_system_helper.py +264 -0
  33. arctrl/py/Conversion/__init__.py +0 -0
  34. arctrl/py/Conversion/assay.py +151 -0
  35. arctrl/py/Conversion/basic.py +559 -0
  36. arctrl/py/Conversion/column_index.py +91 -0
  37. arctrl/py/Conversion/datamap.py +36 -0
  38. arctrl/py/Conversion/date_time.py +32 -0
  39. arctrl/py/Conversion/investigation.py +171 -0
  40. arctrl/py/Conversion/person.py +148 -0
  41. arctrl/py/Conversion/process.py +828 -0
  42. arctrl/py/Conversion/run.py +367 -0
  43. arctrl/py/Conversion/scholarly_article.py +163 -0
  44. arctrl/py/Conversion/study.py +99 -0
  45. arctrl/py/Conversion/table.py +229 -0
  46. arctrl/py/Conversion/workflow.py +680 -0
  47. arctrl/py/Core/Helper/__init__.py +0 -0
  48. arctrl/py/Core/Helper/collections_.py +512 -0
  49. arctrl/py/Core/Helper/date_time.py +26 -0
  50. arctrl/py/Core/Helper/hash_codes.py +60 -0
  51. arctrl/py/Core/Helper/identifier.py +290 -0
  52. arctrl/py/Core/Helper/orcid.py +42 -0
  53. arctrl/py/Core/Helper/printer.py +13 -0
  54. arctrl/py/Core/Helper/regex.py +554 -0
  55. arctrl/py/Core/Helper/sem_ver.py +71 -0
  56. arctrl/py/Core/Helper/url.py +148 -0
  57. arctrl/py/Core/Process/__init__.py +0 -0
  58. arctrl/py/Core/Process/column_index.py +280 -0
  59. arctrl/py/Core/Process/component.py +200 -0
  60. arctrl/py/Core/Process/factor.py +151 -0
  61. arctrl/py/Core/Process/factor_value.py +182 -0
  62. arctrl/py/Core/Process/material.py +74 -0
  63. arctrl/py/Core/Process/material_attribute.py +95 -0
  64. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  65. arctrl/py/Core/Process/material_type.py +45 -0
  66. arctrl/py/Core/Process/process.py +477 -0
  67. arctrl/py/Core/Process/process_input.py +265 -0
  68. arctrl/py/Core/Process/process_output.py +235 -0
  69. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  70. arctrl/py/Core/Process/process_sequence.py +435 -0
  71. arctrl/py/Core/Process/protocol.py +175 -0
  72. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  73. arctrl/py/Core/Process/sample.py +82 -0
  74. arctrl/py/Core/Process/source.py +62 -0
  75. arctrl/py/Core/Table/__init__.py +0 -0
  76. arctrl/py/Core/Table/arc_table.py +1206 -0
  77. arctrl/py/Core/Table/arc_table_aux.py +1308 -0
  78. arctrl/py/Core/Table/arc_tables.py +574 -0
  79. arctrl/py/Core/Table/composite_cell.py +319 -0
  80. arctrl/py/Core/Table/composite_column.py +73 -0
  81. arctrl/py/Core/Table/composite_header.py +739 -0
  82. arctrl/py/Core/__init__.py +0 -0
  83. arctrl/py/Core/arc_types.py +5312 -0
  84. arctrl/py/Core/comment.py +128 -0
  85. arctrl/py/Core/comment_list.py +127 -0
  86. arctrl/py/Core/conversion.py +1375 -0
  87. arctrl/py/Core/data.py +247 -0
  88. arctrl/py/Core/data_context.py +157 -0
  89. arctrl/py/Core/data_file.py +112 -0
  90. arctrl/py/Core/datamap.py +217 -0
  91. arctrl/py/Core/identifier_setters.py +43 -0
  92. arctrl/py/Core/iproperty_value.py +36 -0
  93. arctrl/py/Core/ontology_annotation.py +298 -0
  94. arctrl/py/Core/ontology_source_reference.py +114 -0
  95. arctrl/py/Core/person.py +259 -0
  96. arctrl/py/Core/publication.py +161 -0
  97. arctrl/py/Core/template.py +231 -0
  98. arctrl/py/Core/templates.py +148 -0
  99. arctrl/py/Core/uri.py +11 -0
  100. arctrl/py/Core/value.py +188 -0
  101. arctrl/py/FileSystem/__init__.py +0 -0
  102. arctrl/py/FileSystem/commit.py +21 -0
  103. arctrl/py/FileSystem/default_gitattributes.py +1 -0
  104. arctrl/py/FileSystem/default_gitignore.py +1 -0
  105. arctrl/py/FileSystem/default_license.py +1 -0
  106. arctrl/py/FileSystem/file_system.py +58 -0
  107. arctrl/py/FileSystem/file_system_tree.py +483 -0
  108. arctrl/py/FileSystem/path.py +266 -0
  109. arctrl/py/Json/Datamap/__init__.py +0 -0
  110. arctrl/py/Json/Datamap/data_context.py +101 -0
  111. arctrl/py/Json/Datamap/datamap.py +53 -0
  112. arctrl/py/Json/Process/__init__.py +0 -0
  113. arctrl/py/Json/Process/assay_materials.py +46 -0
  114. arctrl/py/Json/Process/component.py +125 -0
  115. arctrl/py/Json/Process/factor.py +107 -0
  116. arctrl/py/Json/Process/factor_value.py +101 -0
  117. arctrl/py/Json/Process/material.py +226 -0
  118. arctrl/py/Json/Process/material_attribute.py +79 -0
  119. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  120. arctrl/py/Json/Process/material_type.py +53 -0
  121. arctrl/py/Json/Process/process.py +296 -0
  122. arctrl/py/Json/Process/process_input.py +83 -0
  123. arctrl/py/Json/Process/process_output.py +67 -0
  124. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  125. arctrl/py/Json/Process/protocol.py +354 -0
  126. arctrl/py/Json/Process/protocol_parameter.py +91 -0
  127. arctrl/py/Json/Process/sample.py +277 -0
  128. arctrl/py/Json/Process/source.py +214 -0
  129. arctrl/py/Json/Process/study_materials.py +52 -0
  130. arctrl/py/Json/Process/value.py +56 -0
  131. arctrl/py/Json/ROCrate/__init__.py +0 -0
  132. arctrl/py/Json/ROCrate/ldcontext.py +143 -0
  133. arctrl/py/Json/ROCrate/ldgraph.py +117 -0
  134. arctrl/py/Json/ROCrate/ldnode.py +304 -0
  135. arctrl/py/Json/ROCrate/ldref.py +44 -0
  136. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  137. arctrl/py/Json/Table/__init__.py +0 -0
  138. arctrl/py/Json/Table/arc_table.py +375 -0
  139. arctrl/py/Json/Table/cell_table.py +83 -0
  140. arctrl/py/Json/Table/composite_cell.py +136 -0
  141. arctrl/py/Json/Table/composite_header.py +67 -0
  142. arctrl/py/Json/Table/iotype.py +24 -0
  143. arctrl/py/Json/Table/oatable.py +82 -0
  144. arctrl/py/Json/Table/templates.py +281 -0
  145. arctrl/py/Json/__init__.py +0 -0
  146. arctrl/py/Json/assay.py +600 -0
  147. arctrl/py/Json/comment.py +206 -0
  148. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  149. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  150. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  151. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  152. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  153. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  154. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  155. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  156. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  157. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  158. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  159. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  160. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  161. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  162. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  163. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  164. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  165. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  166. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  167. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  168. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  169. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  170. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  171. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  172. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  173. arctrl/py/Json/converter_options.py +23 -0
  174. arctrl/py/Json/data.py +356 -0
  175. arctrl/py/Json/data_file.py +63 -0
  176. arctrl/py/Json/decode.py +271 -0
  177. arctrl/py/Json/encode.py +140 -0
  178. arctrl/py/Json/idtable.py +44 -0
  179. arctrl/py/Json/investigation.py +695 -0
  180. arctrl/py/Json/ontology_annotation.py +404 -0
  181. arctrl/py/Json/ontology_source_reference.py +255 -0
  182. arctrl/py/Json/person.py +658 -0
  183. arctrl/py/Json/property_value.py +359 -0
  184. arctrl/py/Json/publication.py +279 -0
  185. arctrl/py/Json/run.py +275 -0
  186. arctrl/py/Json/string_table.py +87 -0
  187. arctrl/py/Json/study.py +793 -0
  188. arctrl/py/Json/workflow.py +307 -0
  189. arctrl/py/JsonIO/Process/__init__.py +0 -0
  190. arctrl/py/JsonIO/Process/component.py +60 -0
  191. arctrl/py/JsonIO/Process/factor.py +36 -0
  192. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  193. arctrl/py/JsonIO/Process/material.py +60 -0
  194. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  195. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  196. arctrl/py/JsonIO/Process/material_type.py +36 -0
  197. arctrl/py/JsonIO/Process/process.py +60 -0
  198. arctrl/py/JsonIO/Process/process_input.py +38 -0
  199. arctrl/py/JsonIO/Process/process_output.py +60 -0
  200. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  201. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  202. arctrl/py/JsonIO/Process/protocol.py +60 -0
  203. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  204. arctrl/py/JsonIO/Process/sample.py +60 -0
  205. arctrl/py/JsonIO/Process/source.py +60 -0
  206. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  207. arctrl/py/JsonIO/Process/value.py +32 -0
  208. arctrl/py/JsonIO/Table/__init__.py +0 -0
  209. arctrl/py/JsonIO/Table/arc_table.py +103 -0
  210. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  211. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  212. arctrl/py/JsonIO/Table/compression.py +67 -0
  213. arctrl/py/JsonIO/Table/iotype.py +36 -0
  214. arctrl/py/JsonIO/Table/templates.py +113 -0
  215. arctrl/py/JsonIO/__init__.py +0 -0
  216. arctrl/py/JsonIO/assay.py +113 -0
  217. arctrl/py/JsonIO/comment.py +80 -0
  218. arctrl/py/JsonIO/data.py +60 -0
  219. arctrl/py/JsonIO/data_file.py +58 -0
  220. arctrl/py/JsonIO/datamap.py +36 -0
  221. arctrl/py/JsonIO/decode.py +9 -0
  222. arctrl/py/JsonIO/encode.py +1 -0
  223. arctrl/py/JsonIO/investigation.py +91 -0
  224. arctrl/py/JsonIO/ldobject.py +106 -0
  225. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  226. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  227. arctrl/py/JsonIO/person.py +82 -0
  228. arctrl/py/JsonIO/publication.py +82 -0
  229. arctrl/py/JsonIO/run.py +68 -0
  230. arctrl/py/JsonIO/study.py +114 -0
  231. arctrl/py/JsonIO/workflow.py +68 -0
  232. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  233. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  234. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  235. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  236. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  237. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  238. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  239. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  240. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  241. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  242. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  243. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  244. arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
  245. arctrl/py/ROCrate/LDTypes/comment.py +131 -0
  246. arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
  247. arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
  248. arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
  249. arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
  250. arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
  251. arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
  252. arctrl/py/ROCrate/LDTypes/file.py +281 -0
  253. arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
  254. arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
  255. arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
  256. arctrl/py/ROCrate/LDTypes/organization.py +83 -0
  257. arctrl/py/ROCrate/LDTypes/person.py +484 -0
  258. arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
  259. arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
  260. arctrl/py/ROCrate/LDTypes/sample.py +202 -0
  261. arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
  262. arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
  263. arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
  264. arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
  265. arctrl/py/ROCrate/__init__.py +0 -0
  266. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  267. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  268. arctrl/py/ROCrate/helper.py +8 -0
  269. arctrl/py/ROCrate/ldcontext.py +406 -0
  270. arctrl/py/ROCrate/ldobject.py +1247 -0
  271. arctrl/py/ROCrate/rocrate_context.py +51 -0
  272. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  273. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
  274. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  275. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
  276. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  277. arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
  278. arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
  279. arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
  280. arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
  281. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  282. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  283. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  284. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  285. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  286. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  287. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  288. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  289. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  290. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  291. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  292. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  293. arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
  294. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  295. arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
  296. arctrl/py/Spreadsheet/__init__.py +0 -0
  297. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  298. arctrl/py/Spreadsheet/arc_investigation.py +435 -0
  299. arctrl/py/Spreadsheet/arc_run.py +190 -0
  300. arctrl/py/Spreadsheet/arc_study.py +144 -0
  301. arctrl/py/Spreadsheet/arc_workflow.py +177 -0
  302. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  303. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  304. arctrl/py/Spreadsheet/datamap.py +43 -0
  305. arctrl/py/Spreadsheet/template.py +460 -0
  306. arctrl/py/ValidationPackages/__init__.py +0 -0
  307. arctrl/py/ValidationPackages/validation_package.py +82 -0
  308. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  309. arctrl/py/WebRequest/__init__.py +0 -0
  310. arctrl/py/WebRequest/web_request.py +9 -0
  311. arctrl/py/WebRequest/web_request_py.py +135 -0
  312. arctrl/py/WorkflowGraph/__init__.py +0 -0
  313. arctrl/py/WorkflowGraph/adapters.py +141 -0
  314. arctrl/py/WorkflowGraph/build_options.py +45 -0
  315. arctrl/py/WorkflowGraph/builder.py +720 -0
  316. arctrl/py/WorkflowGraph/graph_types.py +260 -0
  317. arctrl/py/WorkflowGraph/query_helpers.py +76 -0
  318. arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
  319. arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
  320. arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
  321. arctrl/py/Yaml/__init__.py +0 -0
  322. arctrl/py/Yaml/decode.py +1 -0
  323. arctrl/py/Yaml/encode.py +10 -0
  324. arctrl/py/Yaml/validation_package.py +77 -0
  325. arctrl/py/Yaml/validation_packages_config.py +86 -0
  326. arctrl/py/__init__.py +0 -0
  327. arctrl/py/arc.py +1891 -0
  328. arctrl/py/column_index.py +280 -0
  329. arctrl/py/conversion.py +142 -0
  330. arctrl/py/cross_async.py +76 -0
  331. arctrl/py/cwlrun_resolver.py +228 -0
  332. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  333. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  334. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  335. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  336. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  337. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  338. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  339. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  340. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  341. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  342. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  343. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  344. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  345. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  346. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  347. arctrl/py/fable_modules/fable_library/char.py +237 -0
  348. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  349. arctrl/py/fable_modules/fable_library/date.py +779 -0
  350. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  351. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  352. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  353. arctrl/py/fable_modules/fable_library/double.py +87 -0
  354. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  355. arctrl/py/fable_modules/fable_library/event.py +206 -0
  356. arctrl/py/fable_modules/fable_library/file.py +107 -0
  357. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  358. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  359. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  360. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  361. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  362. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  363. arctrl/py/fable_modules/fable_library/long.py +240 -0
  364. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  365. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  366. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  367. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  368. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  369. arctrl/py/fable_modules/fable_library/native.py +45 -0
  370. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  371. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  372. arctrl/py/fable_modules/fable_library/option.py +128 -0
  373. arctrl/py/fable_modules/fable_library/path.py +62 -0
  374. arctrl/py/fable_modules/fable_library/range.py +117 -0
  375. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  376. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  377. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  378. arctrl/py/fable_modules/fable_library/result.py +212 -0
  379. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  380. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  381. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  382. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  383. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  384. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  385. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  386. arctrl/py/fable_modules/fable_library/task.py +116 -0
  387. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  388. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  389. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  390. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  391. arctrl/py/fable_modules/fable_library/types.py +401 -0
  392. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  393. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  394. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  395. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  396. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  397. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  398. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  399. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  400. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  401. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  402. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  403. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  404. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  405. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  406. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  407. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  408. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  409. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  410. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  411. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  412. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  413. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  414. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  415. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  416. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  417. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  418. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  419. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  420. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  421. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
  422. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
  423. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  424. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  425. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  426. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  427. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  428. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  429. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  430. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  431. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  432. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
  433. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  434. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  435. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  436. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  437. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  438. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  439. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
  440. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  441. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  442. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
  443. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  444. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
  445. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
  446. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
  447. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
  448. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  449. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  450. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
  451. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
  452. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  453. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  454. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
  455. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  456. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  457. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
  458. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
  459. arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
  460. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
  461. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  462. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
  463. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  464. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  465. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  466. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
  467. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
  468. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
  469. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  470. arctrl/py/fable_modules/siren/__init__.py +0 -0
  471. arctrl/py/fable_modules/siren/config.py +1038 -0
  472. arctrl/py/fable_modules/siren/formatting.py +1121 -0
  473. arctrl/py/fable_modules/siren/siren.py +1941 -0
  474. arctrl/py/fable_modules/siren/siren_types.py +1229 -0
  475. arctrl/py/fable_modules/siren/theme_variables.py +517 -0
  476. arctrl/py/fable_modules/siren/util.py +37 -0
  477. arctrl/py/fable_modules/siren/yaml.py +101 -0
  478. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  479. arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
  480. arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
  481. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  482. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  483. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  484. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  485. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  486. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  487. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  488. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  489. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  490. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  491. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  492. arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
  493. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  494. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  495. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  496. arctrl/py/fable_modules/yamlicious/reader.py +739 -0
  497. arctrl/py/fable_modules/yamlicious/regex.py +29 -0
  498. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
  499. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  500. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  501. arctrl/py/json.py +389 -0
  502. arctrl/py/license.py +169 -0
  503. arctrl/py/rocrate_io.py +242 -0
  504. arctrl/py/template_web.py +23 -0
  505. arctrl/py/xlsx.py +212 -0
  506. arctrl/py/yaml.py +79 -0
  507. arctrl/rocrate.py +21 -0
  508. arctrl-3.0.0.dist-info/METADATA +157 -0
  509. arctrl-3.0.0.dist-info/RECORD +511 -0
  510. arctrl-3.0.0.dist-info/WHEEL +4 -0
  511. arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
@@ -0,0 +1,37 @@
1
+ from __future__ import annotations
2
+ from typing import Any
3
+ from ...fable_modules.dynamic_obj.dyn_obj import set_optional_property
4
+ from ...fable_modules.fable_library.option import default_arg
5
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
6
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
7
+ from ..ldobject import (LDNode, LDNode_reflection)
8
+
9
+ def _expr2223() -> TypeInfo:
10
+ return class_type("ARCtrl.ROCrate.LabProtocol", None, LabProtocol, LDNode_reflection())
11
+
12
+
13
+ class LabProtocol(LDNode):
14
+ def __init__(self, id: str, additional_type: Array[str] | None=None, name: Any | None=None, intended_use: Any | None=None, description: Any | None=None, url: Any | None=None, comment: Any | None=None, version: Any | None=None, lab_equipment: Any | None=None, reagent: Any | None=None, computational_tool: Any | None=None) -> None:
15
+ super().__init__(id, ["bioschemas.org/LabProtocol"], default_arg(additional_type, []))
16
+ this: FSharpRef[LabProtocol] = FSharpRef(None)
17
+ this.contents = self
18
+ self.init_00408: int = 1
19
+ set_optional_property("name", name, this.contents)
20
+ set_optional_property("intendedUse", intended_use, this.contents)
21
+ set_optional_property("description", description, this.contents)
22
+ set_optional_property("url", url, this.contents)
23
+ set_optional_property("comment", comment, this.contents)
24
+ set_optional_property("version", version, this.contents)
25
+ set_optional_property("labEquipment", lab_equipment, this.contents)
26
+ set_optional_property("reagent", reagent, this.contents)
27
+ set_optional_property("computationalTool", computational_tool, this.contents)
28
+
29
+
30
+ LabProtocol_reflection = _expr2223
31
+
32
+ def LabProtocol__ctor_Z6F48851E(id: str, additional_type: Array[str] | None=None, name: Any | None=None, intended_use: Any | None=None, description: Any | None=None, url: Any | None=None, comment: Any | None=None, version: Any | None=None, lab_equipment: Any | None=None, reagent: Any | None=None, computational_tool: Any | None=None) -> LabProtocol:
33
+ return LabProtocol(id, additional_type, name, intended_use, description, url, comment, version, lab_equipment, reagent, computational_tool)
34
+
35
+
36
+ __all__ = ["LabProtocol_reflection"]
37
+
@@ -0,0 +1,72 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr2248() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.Person", None, Person, LDNode_reflection())
13
+
14
+
15
+ class Person(LDNode):
16
+ def __init__(self, id: str, given_name: Any=None, additional_type: Array[str] | None=None, family_name: Any | None=None, email: Any | None=None, identifier: Any | None=None, affiliation: Any | None=None, job_title: Any | None=None, additional_name: Any | None=None, address: Any | None=None, telephone: Any | None=None, fax_number: Any | None=None, disambiguating_description: Any | None=None) -> None:
17
+ super().__init__(id, ["schema.org/Person"], default_arg(additional_type, []))
18
+ this: FSharpRef[Person] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("givenName", given_name, this.contents)
22
+ set_optional_property("familyName", family_name, this.contents)
23
+ set_optional_property("email", email, this.contents)
24
+ set_optional_property("identifier", identifier, this.contents)
25
+ set_optional_property("affiliation", affiliation, this.contents)
26
+ set_optional_property("jobTitle", job_title, this.contents)
27
+ set_optional_property("additionalName", additional_name, this.contents)
28
+ set_optional_property("address", address, this.contents)
29
+ set_optional_property("telephone", telephone, this.contents)
30
+ set_optional_property("faxNumber", fax_number, this.contents)
31
+ set_optional_property("disambiguatingDescription", disambiguating_description, this.contents)
32
+
33
+ def GetGivenName(self, __unit: None=None) -> str:
34
+ this: Person = self
35
+ obj: DynamicObj = this
36
+ if try_get_property_value("givenName", obj) is not None:
37
+ match_value: str | None
38
+ match_value_1: Any | None = obj.TryGetPropertyValue("givenName")
39
+ if match_value_1 is not None:
40
+ o: Any = value_1(match_value_1)
41
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
42
+
43
+ else:
44
+ match_value = None
45
+
46
+ if match_value is None:
47
+ raise Exception(((((("Property \'" + "givenName") + "\' is set on this \'") + "Person") + "\' object but cannot be cast to \'") + "String") + "\'")
48
+
49
+ else:
50
+ return match_value
51
+
52
+
53
+ else:
54
+ raise Exception(((("No property \'" + "givenName") + "\' set on this \'") + "Person") + "\' object although it is mandatory. Was it created correctly?")
55
+
56
+
57
+ @staticmethod
58
+ def get_given_name() -> Callable[[Person], str]:
59
+ def _arrow2247(p: Person) -> str:
60
+ return p.GetGivenName()
61
+
62
+ return _arrow2247
63
+
64
+
65
+ Person_reflection = _expr2248
66
+
67
+ def Person__ctor_16EB4AE1(id: str, given_name: Any=None, additional_type: Array[str] | None=None, family_name: Any | None=None, email: Any | None=None, identifier: Any | None=None, affiliation: Any | None=None, job_title: Any | None=None, additional_name: Any | None=None, address: Any | None=None, telephone: Any | None=None, fax_number: Any | None=None, disambiguating_description: Any | None=None) -> Person:
68
+ return Person(id, given_name, additional_type, family_name, email, identifier, affiliation, job_title, additional_name, address, telephone, fax_number, disambiguating_description)
69
+
70
+
71
+ __all__ = ["Person_reflection"]
72
+
@@ -0,0 +1,98 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr2245() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.PropertyValue", None, PropertyValue, LDNode_reflection())
13
+
14
+
15
+ class PropertyValue(LDNode):
16
+ def __init__(self, id: str, name: Any=None, value: Any=None, property_id: Any | None=None, unit_code: Any | None=None, unit_text: Any | None=None, value_reference: Any | None=None, additional_type: Array[str] | None=None) -> None:
17
+ super().__init__(id, ["schema.org/PropertyValue"], default_arg(additional_type, []))
18
+ this: FSharpRef[PropertyValue] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("name", name, this.contents)
22
+ set_property("value", value, this.contents)
23
+ set_optional_property("propertyID", property_id, this.contents)
24
+ set_optional_property("unitCode", unit_code, this.contents)
25
+ set_optional_property("unitText", unit_text, this.contents)
26
+ set_optional_property("valueReference", value_reference, this.contents)
27
+
28
+ def GetName(self, __unit: None=None) -> str:
29
+ this: PropertyValue = self
30
+ obj: DynamicObj = this
31
+ if try_get_property_value("name", obj) is not None:
32
+ match_value: str | None
33
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
34
+ if match_value_1 is not None:
35
+ o: Any = value_1(match_value_1)
36
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
37
+
38
+ else:
39
+ match_value = None
40
+
41
+ if match_value is None:
42
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "PropertyValue") + "\' object but cannot be cast to \'") + "String") + "\'")
43
+
44
+ else:
45
+ return match_value
46
+
47
+
48
+ else:
49
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "PropertyValue") + "\' object although it is mandatory. Was it created correctly?")
50
+
51
+
52
+ @staticmethod
53
+ def get_name() -> Callable[[PropertyValue], str]:
54
+ def _arrow2243(lp: PropertyValue) -> str:
55
+ return lp.GetName()
56
+
57
+ return _arrow2243
58
+
59
+ def GetValue(self, __unit: None=None) -> str:
60
+ this: PropertyValue = self
61
+ obj: DynamicObj = this
62
+ if try_get_property_value("name", obj) is not None:
63
+ match_value: str | None
64
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
65
+ if match_value_1 is not None:
66
+ o: Any = value_1(match_value_1)
67
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
68
+
69
+ else:
70
+ match_value = None
71
+
72
+ if match_value is None:
73
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "PropertyValue") + "\' object but cannot be cast to \'") + "String") + "\'")
74
+
75
+ else:
76
+ return match_value
77
+
78
+
79
+ else:
80
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "PropertyValue") + "\' object although it is mandatory. Was it created correctly?")
81
+
82
+
83
+ @staticmethod
84
+ def get_value() -> Callable[[PropertyValue], str]:
85
+ def _arrow2244(lp: PropertyValue) -> str:
86
+ return lp.GetValue()
87
+
88
+ return _arrow2244
89
+
90
+
91
+ PropertyValue_reflection = _expr2245
92
+
93
+ def PropertyValue__ctor_Z5E5247A6(id: str, name: Any=None, value: Any=None, property_id: Any | None=None, unit_code: Any | None=None, unit_text: Any | None=None, value_reference: Any | None=None, additional_type: Array[str] | None=None) -> PropertyValue:
94
+ return PropertyValue(id, name, value, property_id, unit_code, unit_text, value_reference, additional_type)
95
+
96
+
97
+ __all__ = ["PropertyValue_reflection"]
98
+
@@ -0,0 +1,64 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr2225() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.Sample", None, Sample, LDNode_reflection())
13
+
14
+
15
+ class Sample(LDNode):
16
+ def __init__(self, id: str, name: Any=None, additional_type: Array[str] | None=None, additional_property: Any | None=None, derives_from: Any | None=None) -> None:
17
+ super().__init__(id, ["bioschemas.org/Sample"], default_arg(additional_type, []))
18
+ this: FSharpRef[Sample] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("name", name, this.contents)
22
+ set_optional_property("additionalProperty", additional_property, this.contents)
23
+ set_optional_property("derivesFrom", derives_from, this.contents)
24
+
25
+ def GetName(self, __unit: None=None) -> str:
26
+ this: Sample = self
27
+ obj: DynamicObj = this
28
+ if try_get_property_value("name", obj) is not None:
29
+ match_value: str | None
30
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
31
+ if match_value_1 is not None:
32
+ o: Any = value_1(match_value_1)
33
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
34
+
35
+ else:
36
+ match_value = None
37
+
38
+ if match_value is None:
39
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "Sample") + "\' object but cannot be cast to \'") + "String") + "\'")
40
+
41
+ else:
42
+ return match_value
43
+
44
+
45
+ else:
46
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "Sample") + "\' object although it is mandatory. Was it created correctly?")
47
+
48
+
49
+ @staticmethod
50
+ def get_name() -> Callable[[Sample], str]:
51
+ def _arrow2224(s: Sample) -> str:
52
+ return s.GetName()
53
+
54
+ return _arrow2224
55
+
56
+
57
+ Sample_reflection = _expr2225
58
+
59
+ def Sample__ctor_Z502AA21F(id: str, name: Any=None, additional_type: Array[str] | None=None, additional_property: Any | None=None, derives_from: Any | None=None) -> Sample:
60
+ return Sample(id, name, additional_type, additional_property, derives_from)
61
+
62
+
63
+ __all__ = ["Sample_reflection"]
64
+
@@ -0,0 +1,98 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr2251() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.ScholarlyArticle", None, ScholarlyArticle, LDNode_reflection())
13
+
14
+
15
+ class ScholarlyArticle(LDNode):
16
+ def __init__(self, id: str, headline: Any=None, identifier: Any=None, additional_type: Array[str] | None=None, author: Any | None=None, url: Any | None=None, creative_work_status: Any | None=None, disambiguating_description: Any | None=None) -> None:
17
+ super().__init__(id, ["schema.org/ScholarlyArticle"], default_arg(additional_type, []))
18
+ this: FSharpRef[ScholarlyArticle] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("headline", headline, this.contents)
22
+ set_property("identifier", identifier, this.contents)
23
+ set_optional_property("author", author, this.contents)
24
+ set_optional_property("url", url, this.contents)
25
+ set_optional_property("creativeWorkStatus", creative_work_status, this.contents)
26
+ set_optional_property("disambiguatingDescription", disambiguating_description, this.contents)
27
+
28
+ def GetHeadline(self, __unit: None=None) -> str:
29
+ this: ScholarlyArticle = self
30
+ obj: DynamicObj = this
31
+ if try_get_property_value("headline", obj) is not None:
32
+ match_value: str | None
33
+ match_value_1: Any | None = obj.TryGetPropertyValue("headline")
34
+ if match_value_1 is not None:
35
+ o: Any = value_1(match_value_1)
36
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
37
+
38
+ else:
39
+ match_value = None
40
+
41
+ if match_value is None:
42
+ raise Exception(((((("Property \'" + "headline") + "\' is set on this \'") + "ScholarlyArticle") + "\' object but cannot be cast to \'") + "String") + "\'")
43
+
44
+ else:
45
+ return match_value
46
+
47
+
48
+ else:
49
+ raise Exception(((("No property \'" + "headline") + "\' set on this \'") + "ScholarlyArticle") + "\' object although it is mandatory. Was it created correctly?")
50
+
51
+
52
+ @staticmethod
53
+ def get_headline() -> Callable[[ScholarlyArticle], str]:
54
+ def _arrow2249(s: ScholarlyArticle) -> str:
55
+ return s.GetHeadline()
56
+
57
+ return _arrow2249
58
+
59
+ def GetIdentifier(self, __unit: None=None) -> str:
60
+ this: ScholarlyArticle = self
61
+ obj: DynamicObj = this
62
+ if try_get_property_value("identifier", obj) is not None:
63
+ match_value: str | None
64
+ match_value_1: Any | None = obj.TryGetPropertyValue("identifier")
65
+ if match_value_1 is not None:
66
+ o: Any = value_1(match_value_1)
67
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
68
+
69
+ else:
70
+ match_value = None
71
+
72
+ if match_value is None:
73
+ raise Exception(((((("Property \'" + "identifier") + "\' is set on this \'") + "ScholarlyArticle") + "\' object but cannot be cast to \'") + "String") + "\'")
74
+
75
+ else:
76
+ return match_value
77
+
78
+
79
+ else:
80
+ raise Exception(((("No property \'" + "identifier") + "\' set on this \'") + "ScholarlyArticle") + "\' object although it is mandatory. Was it created correctly?")
81
+
82
+
83
+ @staticmethod
84
+ def get_identifier() -> Callable[[ScholarlyArticle], str]:
85
+ def _arrow2250(s: ScholarlyArticle) -> str:
86
+ return s.GetIdentifier()
87
+
88
+ return _arrow2250
89
+
90
+
91
+ ScholarlyArticle_reflection = _expr2251
92
+
93
+ def ScholarlyArticle__ctor_Z22702026(id: str, headline: Any=None, identifier: Any=None, additional_type: Array[str] | None=None, author: Any | None=None, url: Any | None=None, creative_work_status: Any | None=None, disambiguating_description: Any | None=None) -> ScholarlyArticle:
94
+ return ScholarlyArticle(id, headline, identifier, additional_type, author, url, creative_work_status, disambiguating_description)
95
+
96
+
97
+ __all__ = ["ScholarlyArticle_reflection"]
98
+
@@ -0,0 +1,74 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import value as value_1
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import FSharpRef
9
+ from .dataset import (Dataset, Dataset_reflection)
10
+ from .investigation import Investigation
11
+
12
+ def _expr2215() -> TypeInfo:
13
+ return class_type("ARCtrl.ROCrate.Study", None, Study, Dataset_reflection())
14
+
15
+
16
+ class Study(Dataset):
17
+ def __init__(self, id: str, identifier: str, about: Any | None=None, citation: Any | None=None, comment: Any | None=None, creator: Any | None=None, date_created: Any | None=None, date_modified: Any | None=None, date_published: Any | None=None, description: Any | None=None, has_part: Any | None=None, headline: Any | None=None, url: Any | None=None) -> None:
18
+ super().__init__(id, ["Study"])
19
+ this: FSharpRef[Study] = FSharpRef(None)
20
+ this.contents = self
21
+ self.init_00408_1: int = 1
22
+ set_property("identifier", identifier, this.contents)
23
+ set_optional_property("about", about, this.contents)
24
+ set_optional_property("citation", citation, this.contents)
25
+ set_optional_property("comment", comment, this.contents)
26
+ set_optional_property("creator", creator, this.contents)
27
+ set_optional_property("dateCreated", date_created, this.contents)
28
+ set_optional_property("dateModified", date_modified, this.contents)
29
+ set_optional_property("datePublished", date_published, this.contents)
30
+ set_optional_property("description", description, this.contents)
31
+ set_optional_property("hasPart", has_part, this.contents)
32
+ set_optional_property("headline", headline, this.contents)
33
+ set_optional_property("url", url, this.contents)
34
+
35
+ def GetIdentifier(self, __unit: None=None) -> str:
36
+ this: Study = self
37
+ obj: DynamicObj = this
38
+ if try_get_property_value("identifier", obj) is not None:
39
+ match_value: str | None
40
+ match_value_1: Any | None = obj.TryGetPropertyValue("identifier")
41
+ if match_value_1 is not None:
42
+ o: Any = value_1(match_value_1)
43
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
44
+
45
+ else:
46
+ match_value = None
47
+
48
+ if match_value is None:
49
+ raise Exception(((((("Property \'" + "identifier") + "\' is set on this \'") + "Study") + "\' object but cannot be cast to \'") + "String") + "\'")
50
+
51
+ else:
52
+ return match_value
53
+
54
+
55
+ else:
56
+ raise Exception(((("No property \'" + "identifier") + "\' set on this \'") + "Study") + "\' object although it is mandatory. Was it created correctly?")
57
+
58
+
59
+ @staticmethod
60
+ def get_identifier() -> Callable[[Investigation], str]:
61
+ def _arrow2214(inv: Investigation) -> str:
62
+ return inv.GetIdentifier()
63
+
64
+ return _arrow2214
65
+
66
+
67
+ Study_reflection = _expr2215
68
+
69
+ def Study__ctor_Z47833D48(id: str, identifier: str, about: Any | None=None, citation: Any | None=None, comment: Any | None=None, creator: Any | None=None, date_created: Any | None=None, date_modified: Any | None=None, date_published: Any | None=None, description: Any | None=None, has_part: Any | None=None, headline: Any | None=None, url: Any | None=None) -> Study:
70
+ return Study(id, identifier, about, citation, comment, creator, date_created, date_modified, date_published, description, has_part, headline, url)
71
+
72
+
73
+ __all__ = ["Study_reflection"]
74
+
File without changes
@@ -0,0 +1,131 @@
1
+ from __future__ import annotations
2
+ from typing import Any
3
+ from ...fable_modules.fable_library.option import value
4
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
5
+ from ..helper import clean
6
+ from ..ldcontext import LDContext
7
+ from ..ldobject import LDNode
8
+
9
+ def _expr2068() -> TypeInfo:
10
+ return class_type("ARCtrl.ROCrate.LDComment", None, LDComment)
11
+
12
+
13
+ class LDComment:
14
+ @staticmethod
15
+ def schema_type() -> str:
16
+ return "http://schema.org/Comment"
17
+
18
+ @staticmethod
19
+ def text() -> str:
20
+ return "http://schema.org/text"
21
+
22
+ @staticmethod
23
+ def name() -> str:
24
+ return "http://schema.org/name"
25
+
26
+ @staticmethod
27
+ def try_get_text_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
28
+ match_value: Any | None = dt.TryGetPropertyAsSingleton(LDComment.text(), context)
29
+ (pattern_matching_result, tc) = (None, None)
30
+ if match_value is not None:
31
+ if str(type(value(match_value))) == "<class \'str\'>":
32
+ pattern_matching_result = 0
33
+ tc = value(match_value)
34
+
35
+ else:
36
+ pattern_matching_result = 1
37
+
38
+
39
+ else:
40
+ pattern_matching_result = 1
41
+
42
+ if pattern_matching_result == 0:
43
+ return tc
44
+
45
+ elif pattern_matching_result == 1:
46
+ return None
47
+
48
+
49
+ @staticmethod
50
+ def get_text_as_string(dt: LDNode, context: LDContext | None=None) -> str:
51
+ match_value: Any | None = dt.TryGetPropertyAsSingleton(LDComment.text(), context)
52
+ if match_value is not None:
53
+ if str(type(value(match_value))) == "<class \'str\'>":
54
+ tc: str = value(match_value)
55
+ return tc
56
+
57
+ else:
58
+ raise Exception(("Property of `text` of object with @id `" + dt.Id) + "` was not a string")
59
+
60
+
61
+ else:
62
+ raise Exception(("Could not access property `text` of object with @id `" + dt.Id) + "`")
63
+
64
+
65
+ @staticmethod
66
+ def set_text_as_string(dt: LDNode, text: str, context: LDContext | None=None) -> Any:
67
+ return dt.SetProperty(LDComment.text(), text, context)
68
+
69
+ @staticmethod
70
+ def try_get_name_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
71
+ match_value: Any | None = dt.TryGetPropertyAsSingleton(LDComment.name(), context)
72
+ (pattern_matching_result, n) = (None, None)
73
+ if match_value is not None:
74
+ if str(type(value(match_value))) == "<class \'str\'>":
75
+ pattern_matching_result = 0
76
+ n = value(match_value)
77
+
78
+ else:
79
+ pattern_matching_result = 1
80
+
81
+
82
+ else:
83
+ pattern_matching_result = 1
84
+
85
+ if pattern_matching_result == 0:
86
+ return n
87
+
88
+ elif pattern_matching_result == 1:
89
+ return None
90
+
91
+
92
+ @staticmethod
93
+ def get_name_as_string(dt: LDNode, context: LDContext | None=None) -> str:
94
+ match_value: Any | None = dt.TryGetPropertyAsSingleton(LDComment.name(), context)
95
+ if match_value is not None:
96
+ if str(type(value(match_value))) == "<class \'str\'>":
97
+ n: str = value(match_value)
98
+ return n
99
+
100
+ else:
101
+ raise Exception(("Property of `name` of object with @id `" + dt.Id) + "` was not a string")
102
+
103
+
104
+ else:
105
+ raise Exception(("Could not access property `name` of object with @id `" + dt.Id) + "`")
106
+
107
+
108
+ @staticmethod
109
+ def set_name_as_string(dt: LDNode, name: str, context: LDContext | None=None) -> Any:
110
+ return dt.SetProperty(LDComment.name(), name, context)
111
+
112
+ @staticmethod
113
+ def gen_id(name: str, text: str | None=None) -> str:
114
+ return clean((("#LDComment_" + name) + "") if (text is None) else (((("#LDComment_" + name) + "_") + text) + ""))
115
+
116
+ @staticmethod
117
+ def validate(dt: LDNode, context: LDContext | None=None) -> bool:
118
+ return dt.HasProperty(LDComment.name(), context) if dt.HasType(LDComment.schema_type(), context) else False
119
+
120
+ @staticmethod
121
+ def create(name: str, id: str | None=None, text: str | None=None, context: LDContext | None=None) -> LDNode:
122
+ dt: LDNode = LDNode(LDComment.gen_id(name, text) if (id is None) else id, [LDComment.schema_type()], None, context)
123
+ dt.SetProperty(LDComment.name(), name, context)
124
+ dt.SetOptionalProperty(LDComment.text(), text, context)
125
+ return dt
126
+
127
+
128
+ LDComment_reflection = _expr2068
129
+
130
+ __all__ = ["LDComment_reflection"]
131
+