arctrl 3.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +23 -0
- arctrl/cwl.py +12 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwlprocessing_unit.py +221 -0
- arctrl/py/CWL/cwltypes.py +364 -0
- arctrl/py/CWL/decode.py +3532 -0
- arctrl/py/CWL/encode.py +1905 -0
- arctrl/py/CWL/expression_tool_description.py +192 -0
- arctrl/py/CWL/hash_helpers.py +60 -0
- arctrl/py/CWL/inputs.py +122 -0
- arctrl/py/CWL/operation_description.py +169 -0
- arctrl/py/CWL/outputs.py +171 -0
- arctrl/py/CWL/parameter_reference.py +74 -0
- arctrl/py/CWL/requirements.py +350 -0
- arctrl/py/CWL/tool_description.py +192 -0
- arctrl/py/CWL/workflow_description.py +181 -0
- arctrl/py/CWL/workflow_steps.py +354 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +89 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +291 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +213 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +396 -0
- arctrl/py/Contract/git.py +116 -0
- arctrl/py/Contract/license.py +58 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +350 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Conversion/__init__.py +0 -0
- arctrl/py/Conversion/assay.py +151 -0
- arctrl/py/Conversion/basic.py +559 -0
- arctrl/py/Conversion/column_index.py +91 -0
- arctrl/py/Conversion/datamap.py +36 -0
- arctrl/py/Conversion/date_time.py +32 -0
- arctrl/py/Conversion/investigation.py +171 -0
- arctrl/py/Conversion/person.py +148 -0
- arctrl/py/Conversion/process.py +828 -0
- arctrl/py/Conversion/run.py +367 -0
- arctrl/py/Conversion/scholarly_article.py +163 -0
- arctrl/py/Conversion/study.py +99 -0
- arctrl/py/Conversion/table.py +229 -0
- arctrl/py/Conversion/workflow.py +680 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +512 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +290 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1206 -0
- arctrl/py/Core/Table/arc_table_aux.py +1308 -0
- arctrl/py/Core/Table/arc_tables.py +574 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5312 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1375 -0
- arctrl/py/Core/data.py +247 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/datamap.py +217 -0
- arctrl/py/Core/identifier_setters.py +43 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +298 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +1 -0
- arctrl/py/FileSystem/default_gitignore.py +1 -0
- arctrl/py/FileSystem/default_license.py +1 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +483 -0
- arctrl/py/FileSystem/path.py +266 -0
- arctrl/py/Json/Datamap/__init__.py +0 -0
- arctrl/py/Json/Datamap/data_context.py +101 -0
- arctrl/py/Json/Datamap/datamap.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +125 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +91 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +143 -0
- arctrl/py/Json/ROCrate/ldgraph.py +117 -0
- arctrl/py/Json/ROCrate/ldnode.py +304 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +375 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +271 -0
- arctrl/py/Json/encode.py +140 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/run.py +275 -0
- arctrl/py/Json/string_table.py +87 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/Json/workflow.py +307 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +103 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +67 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/datamap.py +36 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +91 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/run.py +68 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/JsonIO/workflow.py +68 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
- arctrl/py/ROCrate/LDTypes/comment.py +131 -0
- arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
- arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
- arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
- arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
- arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
- arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
- arctrl/py/ROCrate/LDTypes/file.py +281 -0
- arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
- arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
- arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
- arctrl/py/ROCrate/LDTypes/organization.py +83 -0
- arctrl/py/ROCrate/LDTypes/person.py +484 -0
- arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
- arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
- arctrl/py/ROCrate/LDTypes/sample.py +202 -0
- arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
- arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
- arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
- arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +406 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +435 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +177 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/datamap.py +43 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/WorkflowGraph/__init__.py +0 -0
- arctrl/py/WorkflowGraph/adapters.py +141 -0
- arctrl/py/WorkflowGraph/build_options.py +45 -0
- arctrl/py/WorkflowGraph/builder.py +720 -0
- arctrl/py/WorkflowGraph/graph_types.py +260 -0
- arctrl/py/WorkflowGraph/query_helpers.py +76 -0
- arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
- arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
- arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1891 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +142 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/cwlrun_resolver.py +228 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
- arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/siren/__init__.py +0 -0
- arctrl/py/fable_modules/siren/config.py +1038 -0
- arctrl/py/fable_modules/siren/formatting.py +1121 -0
- arctrl/py/fable_modules/siren/siren.py +1941 -0
- arctrl/py/fable_modules/siren/siren_types.py +1229 -0
- arctrl/py/fable_modules/siren/theme_variables.py +517 -0
- arctrl/py/fable_modules/siren/util.py +37 -0
- arctrl/py/fable_modules/siren/yaml.py +101 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +739 -0
- arctrl/py/fable_modules/yamlicious/regex.py +29 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +389 -0
- arctrl/py/license.py +169 -0
- arctrl/py/rocrate_io.py +242 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +212 -0
- arctrl/py/yaml.py +79 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0.dist-info/METADATA +157 -0
- arctrl-3.0.0.dist-info/RECORD +511 -0
- arctrl-3.0.0.dist-info/WHEEL +4 -0
- arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
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@@ -0,0 +1,943 @@
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from __future__ import annotations
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from collections.abc import Callable
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from datetime import datetime
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from typing import Any
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from ...fable_modules.fable_library.array_ import contains
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from ...fable_modules.fable_library.option import (value as value_1, to_array)
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from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
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from ...fable_modules.fable_library.resize_array import exists
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from ...fable_modules.fable_library.seq import (try_find, iterate)
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from ...fable_modules.fable_library.types import Array
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from ...fable_modules.fable_library.util import string_hash
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from ...Core.Helper.collections_ import ResizeArray_tryPick
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from ..ldcontext import LDContext
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from ..ldobject import (LDNode, LDGraph, LDRef)
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from .comment import LDComment
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from .creative_work import LDCreativeWork
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from .defined_term import LDDefinedTerm
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from .lab_process import LDLabProcess
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from .person import LDPerson
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from .property_value import LDPropertyValue
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from .scholarly_article import LDScholarlyArticle
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from .workflow_protocol import LDWorkflowProtocol
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class LDDataset:
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@staticmethod
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@staticmethod
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def identifier() -> str:
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def creator() -> str:
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@staticmethod
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def date_created() -> str:
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return "http://schema.org/dateCreated"
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@staticmethod
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def date_published() -> str:
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@staticmethod
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@staticmethod
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def description() -> str:
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@staticmethod
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def headline() -> str:
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@staticmethod
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def citation() -> str:
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@staticmethod
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def comment() -> str:
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@staticmethod
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def mentions() -> str:
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@staticmethod
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def url() -> str:
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@staticmethod
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def about() -> str:
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return "http://schema.org/about"
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@staticmethod
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def measurement_method() -> str:
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@staticmethod
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def measurement_technique() -> str:
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@staticmethod
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@staticmethod
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def main_entity() -> str:
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@staticmethod
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def conforms_to() -> str:
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return "http://purl.org/dc/terms/conformsTo"
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@staticmethod
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def try_get_identifier_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
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match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.identifier(), context)
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if str(type(value_1(match_value))) == "<class \'str\'>":
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else:
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pattern_matching_result = 1
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if pattern_matching_result == 0:
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return n
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elif pattern_matching_result == 1:
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return None
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@staticmethod
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def get_identifier_as_string(lp: LDNode, context: LDContext | None=None) -> str:
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match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.identifier(), context)
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if match_value is not None:
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if str(type(value_1(match_value))) == "<class \'str\'>":
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n: str = value_1(match_value)
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return n
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else:
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raise Exception(("property `identifier` of object with @id `" + lp.Id) + "` was not a string")
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else:
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raise Exception(("Could not access property `identifier` of object with @id `" + lp.Id) + "`")
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@staticmethod
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def set_identifier_as_string(lp: LDNode, identifier: str, context: LDContext | None=None) -> Any:
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return lp.SetProperty(LDDataset.identifier(), identifier, context)
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@staticmethod
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def get_creators(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
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def filter(p: LDNode, ctx: LDContext | None=None) -> bool:
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return LDPerson.validate(p, ctx)
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return lp.GetPropertyNodes(LDDataset.creator(), filter, graph, context)
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@staticmethod
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def set_creators(lp: LDNode, creators: Array[LDNode], context: LDContext | None=None) -> Any:
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return lp.SetProperty(LDDataset.creator(), creators, context)
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@staticmethod
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def try_get_date_created_as_date_time(lp: LDNode, context: LDContext | None=None) -> Any | None:
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match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.date_created(), context)
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(pattern_matching_result, n) = (None, None)
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if match_value is not None:
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if isinstance(value_1(match_value), datetime):
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pattern_matching_result = 0
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n = value_1(match_value)
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181
|
+
|
|
182
|
+
else:
|
|
183
|
+
pattern_matching_result = 1
|
|
184
|
+
|
|
185
|
+
|
|
186
|
+
else:
|
|
187
|
+
pattern_matching_result = 1
|
|
188
|
+
|
|
189
|
+
if pattern_matching_result == 0:
|
|
190
|
+
return n
|
|
191
|
+
|
|
192
|
+
elif pattern_matching_result == 1:
|
|
193
|
+
return None
|
|
194
|
+
|
|
195
|
+
|
|
196
|
+
@staticmethod
|
|
197
|
+
def set_date_created_as_date_time(lp: LDNode, date_created: Any, context: LDContext | None=None) -> Any:
|
|
198
|
+
return lp.SetProperty(LDDataset.date_created(), date_created, context)
|
|
199
|
+
|
|
200
|
+
@staticmethod
|
|
201
|
+
def try_get_date_published_as_date_time(lp: LDNode, context: LDContext | None=None) -> Any | None:
|
|
202
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.date_published(), context)
|
|
203
|
+
(pattern_matching_result, n) = (None, None)
|
|
204
|
+
if match_value is not None:
|
|
205
|
+
if isinstance(value_1(match_value), datetime):
|
|
206
|
+
pattern_matching_result = 0
|
|
207
|
+
n = value_1(match_value)
|
|
208
|
+
|
|
209
|
+
else:
|
|
210
|
+
pattern_matching_result = 1
|
|
211
|
+
|
|
212
|
+
|
|
213
|
+
else:
|
|
214
|
+
pattern_matching_result = 1
|
|
215
|
+
|
|
216
|
+
if pattern_matching_result == 0:
|
|
217
|
+
return n
|
|
218
|
+
|
|
219
|
+
elif pattern_matching_result == 1:
|
|
220
|
+
return None
|
|
221
|
+
|
|
222
|
+
|
|
223
|
+
@staticmethod
|
|
224
|
+
def set_date_published_as_date_time(lp: LDNode, date_published: Any, context: LDContext | None=None) -> Any:
|
|
225
|
+
return lp.SetProperty(LDDataset.date_published(), date_published, context)
|
|
226
|
+
|
|
227
|
+
@staticmethod
|
|
228
|
+
def try_get_sddate_published_as_date_time(lp: LDNode, context: LDContext | None=None) -> Any | None:
|
|
229
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.sd_date_published(), context)
|
|
230
|
+
(pattern_matching_result, n) = (None, None)
|
|
231
|
+
if match_value is not None:
|
|
232
|
+
if isinstance(value_1(match_value), datetime):
|
|
233
|
+
pattern_matching_result = 0
|
|
234
|
+
n = value_1(match_value)
|
|
235
|
+
|
|
236
|
+
else:
|
|
237
|
+
pattern_matching_result = 1
|
|
238
|
+
|
|
239
|
+
|
|
240
|
+
else:
|
|
241
|
+
pattern_matching_result = 1
|
|
242
|
+
|
|
243
|
+
if pattern_matching_result == 0:
|
|
244
|
+
return n
|
|
245
|
+
|
|
246
|
+
elif pattern_matching_result == 1:
|
|
247
|
+
return None
|
|
248
|
+
|
|
249
|
+
|
|
250
|
+
@staticmethod
|
|
251
|
+
def set_sddate_published_as_date_time(lp: LDNode, sd_date_published: Any, context: LDContext | None=None) -> Any:
|
|
252
|
+
return lp.SetProperty(LDDataset.sd_date_published(), sd_date_published, context)
|
|
253
|
+
|
|
254
|
+
@staticmethod
|
|
255
|
+
def try_get_license_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
256
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.license(), context)
|
|
257
|
+
(pattern_matching_result, n) = (None, None)
|
|
258
|
+
if match_value is not None:
|
|
259
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
260
|
+
pattern_matching_result = 0
|
|
261
|
+
n = value_1(match_value)
|
|
262
|
+
|
|
263
|
+
else:
|
|
264
|
+
pattern_matching_result = 1
|
|
265
|
+
|
|
266
|
+
|
|
267
|
+
else:
|
|
268
|
+
pattern_matching_result = 1
|
|
269
|
+
|
|
270
|
+
if pattern_matching_result == 0:
|
|
271
|
+
return n
|
|
272
|
+
|
|
273
|
+
elif pattern_matching_result == 1:
|
|
274
|
+
return None
|
|
275
|
+
|
|
276
|
+
|
|
277
|
+
@staticmethod
|
|
278
|
+
def try_get_license_as_creative_work(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
279
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDDataset.license(), graph, context)
|
|
280
|
+
(pattern_matching_result, n_1) = (None, None)
|
|
281
|
+
if match_value is not None:
|
|
282
|
+
def _arrow2226(__unit: None=None) -> bool:
|
|
283
|
+
n: LDNode = match_value
|
|
284
|
+
return LDCreativeWork.validate(n, context)
|
|
285
|
+
|
|
286
|
+
if _arrow2226():
|
|
287
|
+
pattern_matching_result = 0
|
|
288
|
+
n_1 = match_value
|
|
289
|
+
|
|
290
|
+
else:
|
|
291
|
+
pattern_matching_result = 1
|
|
292
|
+
|
|
293
|
+
|
|
294
|
+
else:
|
|
295
|
+
pattern_matching_result = 1
|
|
296
|
+
|
|
297
|
+
if pattern_matching_result == 0:
|
|
298
|
+
return n_1
|
|
299
|
+
|
|
300
|
+
elif pattern_matching_result == 1:
|
|
301
|
+
return None
|
|
302
|
+
|
|
303
|
+
|
|
304
|
+
@staticmethod
|
|
305
|
+
def set_license_as_string(lp: LDNode, license: str, context: LDContext | None=None) -> Any:
|
|
306
|
+
return lp.SetProperty(LDDataset.license(), license, context)
|
|
307
|
+
|
|
308
|
+
@staticmethod
|
|
309
|
+
def set_license_as_creative_work(lp: LDNode, license: Any=None, context: LDContext | None=None) -> Any:
|
|
310
|
+
return lp.SetProperty(LDDataset.license(), license, context)
|
|
311
|
+
|
|
312
|
+
@staticmethod
|
|
313
|
+
def try_get_date_modified_as_date_time(lp: LDNode, context: LDContext | None=None) -> Any | None:
|
|
314
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.date_modified(), context)
|
|
315
|
+
(pattern_matching_result, n) = (None, None)
|
|
316
|
+
if match_value is not None:
|
|
317
|
+
if isinstance(value_1(match_value), datetime):
|
|
318
|
+
pattern_matching_result = 0
|
|
319
|
+
n = value_1(match_value)
|
|
320
|
+
|
|
321
|
+
else:
|
|
322
|
+
pattern_matching_result = 1
|
|
323
|
+
|
|
324
|
+
|
|
325
|
+
else:
|
|
326
|
+
pattern_matching_result = 1
|
|
327
|
+
|
|
328
|
+
if pattern_matching_result == 0:
|
|
329
|
+
return n
|
|
330
|
+
|
|
331
|
+
elif pattern_matching_result == 1:
|
|
332
|
+
return None
|
|
333
|
+
|
|
334
|
+
|
|
335
|
+
@staticmethod
|
|
336
|
+
def set_date_modified_as_date_time(lp: LDNode, date_modified: Any, context: LDContext | None=None) -> Any:
|
|
337
|
+
return lp.SetProperty(LDDataset.date_modified(), date_modified, context)
|
|
338
|
+
|
|
339
|
+
@staticmethod
|
|
340
|
+
def try_get_description_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
341
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.description(), context)
|
|
342
|
+
(pattern_matching_result, n) = (None, None)
|
|
343
|
+
if match_value is not None:
|
|
344
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
345
|
+
pattern_matching_result = 0
|
|
346
|
+
n = value_1(match_value)
|
|
347
|
+
|
|
348
|
+
else:
|
|
349
|
+
pattern_matching_result = 1
|
|
350
|
+
|
|
351
|
+
|
|
352
|
+
else:
|
|
353
|
+
pattern_matching_result = 1
|
|
354
|
+
|
|
355
|
+
if pattern_matching_result == 0:
|
|
356
|
+
return n
|
|
357
|
+
|
|
358
|
+
elif pattern_matching_result == 1:
|
|
359
|
+
return None
|
|
360
|
+
|
|
361
|
+
|
|
362
|
+
@staticmethod
|
|
363
|
+
def get_description_as_string(lp: LDNode, context: LDContext | None=None) -> str:
|
|
364
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.description(), context)
|
|
365
|
+
if match_value is not None:
|
|
366
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
367
|
+
n: str = value_1(match_value)
|
|
368
|
+
return n
|
|
369
|
+
|
|
370
|
+
else:
|
|
371
|
+
raise Exception(("property `description` of object with @id `" + lp.Id) + "` was not a string")
|
|
372
|
+
|
|
373
|
+
|
|
374
|
+
else:
|
|
375
|
+
raise Exception(("Could not access property `description` of object with @id `" + lp.Id) + "`")
|
|
376
|
+
|
|
377
|
+
|
|
378
|
+
@staticmethod
|
|
379
|
+
def set_description_as_string(lp: LDNode, description: str, context: LDContext | None=None) -> Any:
|
|
380
|
+
return lp.SetProperty(LDDataset.description(), description, context)
|
|
381
|
+
|
|
382
|
+
@staticmethod
|
|
383
|
+
def get_has_parts(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
384
|
+
return lp.GetPropertyNodes(LDDataset.has_part(), None, graph, context)
|
|
385
|
+
|
|
386
|
+
@staticmethod
|
|
387
|
+
def get_has_parts_as_dataset(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
388
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
389
|
+
return LDDataset.validate(ldnode, context_1)
|
|
390
|
+
|
|
391
|
+
return lp.GetPropertyNodes(LDDataset.has_part(), filter, graph, context)
|
|
392
|
+
|
|
393
|
+
@staticmethod
|
|
394
|
+
def get_has_parts_as_file(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
395
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
396
|
+
return LDFile.validate(ldnode, context_1)
|
|
397
|
+
|
|
398
|
+
return lp.GetPropertyNodes(LDDataset.has_part(), filter, graph, context)
|
|
399
|
+
|
|
400
|
+
@staticmethod
|
|
401
|
+
def set_has_parts(lp: LDNode, has_parts: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
402
|
+
return lp.SetProperty(LDDataset.has_part(), has_parts, context)
|
|
403
|
+
|
|
404
|
+
@staticmethod
|
|
405
|
+
def try_get_headline_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
406
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.headline(), context)
|
|
407
|
+
(pattern_matching_result, n) = (None, None)
|
|
408
|
+
if match_value is not None:
|
|
409
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
410
|
+
pattern_matching_result = 0
|
|
411
|
+
n = value_1(match_value)
|
|
412
|
+
|
|
413
|
+
else:
|
|
414
|
+
pattern_matching_result = 1
|
|
415
|
+
|
|
416
|
+
|
|
417
|
+
else:
|
|
418
|
+
pattern_matching_result = 1
|
|
419
|
+
|
|
420
|
+
if pattern_matching_result == 0:
|
|
421
|
+
return n
|
|
422
|
+
|
|
423
|
+
elif pattern_matching_result == 1:
|
|
424
|
+
return None
|
|
425
|
+
|
|
426
|
+
|
|
427
|
+
@staticmethod
|
|
428
|
+
def try_get_name_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
429
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.name(), context)
|
|
430
|
+
(pattern_matching_result, n) = (None, None)
|
|
431
|
+
if match_value is not None:
|
|
432
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
433
|
+
pattern_matching_result = 0
|
|
434
|
+
n = value_1(match_value)
|
|
435
|
+
|
|
436
|
+
else:
|
|
437
|
+
pattern_matching_result = 1
|
|
438
|
+
|
|
439
|
+
|
|
440
|
+
else:
|
|
441
|
+
pattern_matching_result = 1
|
|
442
|
+
|
|
443
|
+
if pattern_matching_result == 0:
|
|
444
|
+
return n
|
|
445
|
+
|
|
446
|
+
elif pattern_matching_result == 1:
|
|
447
|
+
return None
|
|
448
|
+
|
|
449
|
+
|
|
450
|
+
@staticmethod
|
|
451
|
+
def get_name_as_string(lp: LDNode, context: LDContext | None=None) -> str:
|
|
452
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.name(), context)
|
|
453
|
+
if match_value is not None:
|
|
454
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
455
|
+
n: str = value_1(match_value)
|
|
456
|
+
return n
|
|
457
|
+
|
|
458
|
+
else:
|
|
459
|
+
raise Exception(("property `name` of object with @id `" + lp.Id) + "` was not a string")
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
else:
|
|
463
|
+
raise Exception(("Could not access property `name` of object with @id `" + lp.Id) + "`")
|
|
464
|
+
|
|
465
|
+
|
|
466
|
+
@staticmethod
|
|
467
|
+
def set_name_as_string(lp: LDNode, name: str, context: LDContext | None=None) -> Any:
|
|
468
|
+
return lp.SetProperty(LDDataset.name(), name, context)
|
|
469
|
+
|
|
470
|
+
@staticmethod
|
|
471
|
+
def get_citations(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
472
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
473
|
+
return LDScholarlyArticle.validate(ldnode, context_1)
|
|
474
|
+
|
|
475
|
+
return lp.GetPropertyNodes(LDDataset.citation(), filter, graph, context)
|
|
476
|
+
|
|
477
|
+
@staticmethod
|
|
478
|
+
def set_citations(lp: LDNode, citations: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
479
|
+
return lp.SetProperty(LDDataset.citation(), citations, context)
|
|
480
|
+
|
|
481
|
+
@staticmethod
|
|
482
|
+
def get_comments(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
483
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
484
|
+
return LDComment.validate(ldnode, context_1)
|
|
485
|
+
|
|
486
|
+
return lp.GetPropertyNodes(LDDataset.comment(), filter, graph, context)
|
|
487
|
+
|
|
488
|
+
@staticmethod
|
|
489
|
+
def set_comments(lp: LDNode, comments: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
490
|
+
return lp.SetProperty(LDDataset.comment(), comments, context)
|
|
491
|
+
|
|
492
|
+
@staticmethod
|
|
493
|
+
def try_get_url_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
494
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.url(), context)
|
|
495
|
+
(pattern_matching_result, n) = (None, None)
|
|
496
|
+
if match_value is not None:
|
|
497
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
498
|
+
pattern_matching_result = 0
|
|
499
|
+
n = value_1(match_value)
|
|
500
|
+
|
|
501
|
+
else:
|
|
502
|
+
pattern_matching_result = 1
|
|
503
|
+
|
|
504
|
+
|
|
505
|
+
else:
|
|
506
|
+
pattern_matching_result = 1
|
|
507
|
+
|
|
508
|
+
if pattern_matching_result == 0:
|
|
509
|
+
return n
|
|
510
|
+
|
|
511
|
+
elif pattern_matching_result == 1:
|
|
512
|
+
return None
|
|
513
|
+
|
|
514
|
+
|
|
515
|
+
@staticmethod
|
|
516
|
+
def get_url_as_string(lp: LDNode, context: LDContext | None=None) -> str:
|
|
517
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.url(), context)
|
|
518
|
+
if match_value is not None:
|
|
519
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
520
|
+
n: str = value_1(match_value)
|
|
521
|
+
return n
|
|
522
|
+
|
|
523
|
+
else:
|
|
524
|
+
raise Exception(("property `url` of object with @id `" + lp.Id) + "` was not a string")
|
|
525
|
+
|
|
526
|
+
|
|
527
|
+
else:
|
|
528
|
+
raise Exception(("Could not access property `url` of object with @id `" + lp.Id) + "`")
|
|
529
|
+
|
|
530
|
+
|
|
531
|
+
@staticmethod
|
|
532
|
+
def set_url_as_string(lp: LDNode, url: str, context: LDContext | None=None) -> Any:
|
|
533
|
+
return lp.SetProperty(LDDataset.url(), url, context)
|
|
534
|
+
|
|
535
|
+
@staticmethod
|
|
536
|
+
def get_abouts(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
537
|
+
return lp.GetPropertyNodes(LDDataset.about(), None, graph, context)
|
|
538
|
+
|
|
539
|
+
@staticmethod
|
|
540
|
+
def get_abouts_as_lab_process(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
541
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
542
|
+
return LDLabProcess.validate(ldnode, context_1)
|
|
543
|
+
|
|
544
|
+
return lp.GetPropertyNodes(LDDataset.about(), filter, graph, context)
|
|
545
|
+
|
|
546
|
+
@staticmethod
|
|
547
|
+
def get_abouts_as_workflow_invocation(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
548
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
549
|
+
return LDWorkflowInvocation.validate(ldnode, context_1)
|
|
550
|
+
|
|
551
|
+
return lp.GetPropertyNodes(LDDataset.about(), filter, graph, context)
|
|
552
|
+
|
|
553
|
+
@staticmethod
|
|
554
|
+
def set_abouts(lp: LDNode, abouts: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
555
|
+
return lp.SetProperty(LDDataset.about(), abouts, context)
|
|
556
|
+
|
|
557
|
+
@staticmethod
|
|
558
|
+
def try_get_measurement_method_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
559
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.measurement_method(), context)
|
|
560
|
+
(pattern_matching_result, n) = (None, None)
|
|
561
|
+
if match_value is not None:
|
|
562
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
563
|
+
pattern_matching_result = 0
|
|
564
|
+
n = value_1(match_value)
|
|
565
|
+
|
|
566
|
+
else:
|
|
567
|
+
pattern_matching_result = 1
|
|
568
|
+
|
|
569
|
+
|
|
570
|
+
else:
|
|
571
|
+
pattern_matching_result = 1
|
|
572
|
+
|
|
573
|
+
if pattern_matching_result == 0:
|
|
574
|
+
return n
|
|
575
|
+
|
|
576
|
+
elif pattern_matching_result == 1:
|
|
577
|
+
return None
|
|
578
|
+
|
|
579
|
+
|
|
580
|
+
@staticmethod
|
|
581
|
+
def try_get_measurement_method_as_defined_term(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
582
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDDataset.measurement_method(), graph, context)
|
|
583
|
+
(pattern_matching_result, n_1) = (None, None)
|
|
584
|
+
if match_value is not None:
|
|
585
|
+
def _arrow2229(__unit: None=None) -> bool:
|
|
586
|
+
n: LDNode = match_value
|
|
587
|
+
return LDDefinedTerm.validate(n, context)
|
|
588
|
+
|
|
589
|
+
if _arrow2229():
|
|
590
|
+
pattern_matching_result = 0
|
|
591
|
+
n_1 = match_value
|
|
592
|
+
|
|
593
|
+
else:
|
|
594
|
+
pattern_matching_result = 1
|
|
595
|
+
|
|
596
|
+
|
|
597
|
+
else:
|
|
598
|
+
pattern_matching_result = 1
|
|
599
|
+
|
|
600
|
+
if pattern_matching_result == 0:
|
|
601
|
+
return n_1
|
|
602
|
+
|
|
603
|
+
elif pattern_matching_result == 1:
|
|
604
|
+
return None
|
|
605
|
+
|
|
606
|
+
|
|
607
|
+
@staticmethod
|
|
608
|
+
def set_measurement_method_as_string(lp: LDNode, measurement_method: str, context: LDContext | None=None) -> Any:
|
|
609
|
+
return lp.SetProperty(LDDataset.measurement_method(), measurement_method, context)
|
|
610
|
+
|
|
611
|
+
@staticmethod
|
|
612
|
+
def set_measurement_method_as_defined_term(lp: LDNode, measurement_method: LDNode, context: LDContext | None=None) -> Any:
|
|
613
|
+
return lp.SetProperty(LDDataset.measurement_method(), measurement_method, context)
|
|
614
|
+
|
|
615
|
+
@staticmethod
|
|
616
|
+
def try_get_measurement_technique_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
617
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.measurement_technique(), context)
|
|
618
|
+
(pattern_matching_result, n) = (None, None)
|
|
619
|
+
if match_value is not None:
|
|
620
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
621
|
+
pattern_matching_result = 0
|
|
622
|
+
n = value_1(match_value)
|
|
623
|
+
|
|
624
|
+
else:
|
|
625
|
+
pattern_matching_result = 1
|
|
626
|
+
|
|
627
|
+
|
|
628
|
+
else:
|
|
629
|
+
pattern_matching_result = 1
|
|
630
|
+
|
|
631
|
+
if pattern_matching_result == 0:
|
|
632
|
+
return n
|
|
633
|
+
|
|
634
|
+
elif pattern_matching_result == 1:
|
|
635
|
+
return None
|
|
636
|
+
|
|
637
|
+
|
|
638
|
+
@staticmethod
|
|
639
|
+
def try_get_measurement_technique_as_defined_term(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
640
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDDataset.measurement_technique(), graph, context)
|
|
641
|
+
(pattern_matching_result, n_1) = (None, None)
|
|
642
|
+
if match_value is not None:
|
|
643
|
+
def _arrow2230(__unit: None=None) -> bool:
|
|
644
|
+
n: LDNode = match_value
|
|
645
|
+
return LDDefinedTerm.validate(n, context)
|
|
646
|
+
|
|
647
|
+
if _arrow2230():
|
|
648
|
+
pattern_matching_result = 0
|
|
649
|
+
n_1 = match_value
|
|
650
|
+
|
|
651
|
+
else:
|
|
652
|
+
pattern_matching_result = 1
|
|
653
|
+
|
|
654
|
+
|
|
655
|
+
else:
|
|
656
|
+
pattern_matching_result = 1
|
|
657
|
+
|
|
658
|
+
if pattern_matching_result == 0:
|
|
659
|
+
return n_1
|
|
660
|
+
|
|
661
|
+
elif pattern_matching_result == 1:
|
|
662
|
+
return None
|
|
663
|
+
|
|
664
|
+
|
|
665
|
+
@staticmethod
|
|
666
|
+
def set_measurement_technique_as_string(lp: LDNode, measurement_technique: str, context: LDContext | None=None) -> Any:
|
|
667
|
+
return lp.SetProperty(LDDataset.measurement_technique(), measurement_technique, context)
|
|
668
|
+
|
|
669
|
+
@staticmethod
|
|
670
|
+
def set_measurement_technique_as_defined_term(lp: LDNode, measurement_technique: LDNode, context: LDContext | None=None) -> Any:
|
|
671
|
+
return lp.SetProperty(LDDataset.measurement_technique(), measurement_technique, context)
|
|
672
|
+
|
|
673
|
+
@staticmethod
|
|
674
|
+
def try_get_variable_measured_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
675
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDDataset.variable_measured(), context)
|
|
676
|
+
(pattern_matching_result, n) = (None, None)
|
|
677
|
+
if match_value is not None:
|
|
678
|
+
if str(type(value_1(match_value))) == "<class \'str\'>":
|
|
679
|
+
pattern_matching_result = 0
|
|
680
|
+
n = value_1(match_value)
|
|
681
|
+
|
|
682
|
+
else:
|
|
683
|
+
pattern_matching_result = 1
|
|
684
|
+
|
|
685
|
+
|
|
686
|
+
else:
|
|
687
|
+
pattern_matching_result = 1
|
|
688
|
+
|
|
689
|
+
if pattern_matching_result == 0:
|
|
690
|
+
return n
|
|
691
|
+
|
|
692
|
+
elif pattern_matching_result == 1:
|
|
693
|
+
return None
|
|
694
|
+
|
|
695
|
+
|
|
696
|
+
@staticmethod
|
|
697
|
+
def try_get_variable_measured_as_property_value(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
698
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDDataset.variable_measured(), graph, context)
|
|
699
|
+
(pattern_matching_result, n_1) = (None, None)
|
|
700
|
+
if match_value is not None:
|
|
701
|
+
def _arrow2231(__unit: None=None) -> bool:
|
|
702
|
+
n: LDNode = match_value
|
|
703
|
+
return LDPropertyValue.validate(n, context)
|
|
704
|
+
|
|
705
|
+
if _arrow2231():
|
|
706
|
+
pattern_matching_result = 0
|
|
707
|
+
n_1 = match_value
|
|
708
|
+
|
|
709
|
+
else:
|
|
710
|
+
pattern_matching_result = 1
|
|
711
|
+
|
|
712
|
+
|
|
713
|
+
else:
|
|
714
|
+
pattern_matching_result = 1
|
|
715
|
+
|
|
716
|
+
if pattern_matching_result == 0:
|
|
717
|
+
return n_1
|
|
718
|
+
|
|
719
|
+
elif pattern_matching_result == 1:
|
|
720
|
+
return None
|
|
721
|
+
|
|
722
|
+
|
|
723
|
+
@staticmethod
|
|
724
|
+
def try_get_variable_measured_as_measurement_type(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
725
|
+
def f(n: LDNode) -> LDNode | None:
|
|
726
|
+
if not LDPropertyValue.validate_fragment_descriptor(n, context):
|
|
727
|
+
return n
|
|
728
|
+
|
|
729
|
+
else:
|
|
730
|
+
return None
|
|
731
|
+
|
|
732
|
+
|
|
733
|
+
return ResizeArray_tryPick(f, lp.GetPropertyNodes(LDDataset.variable_measured(), None, graph, context))
|
|
734
|
+
|
|
735
|
+
@staticmethod
|
|
736
|
+
def get_variable_measured_as_fragment_descriptors(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
737
|
+
def filter(ldnode: LDNode, context_1: LDContext | None=None) -> bool:
|
|
738
|
+
return LDPropertyValue.validate_fragment_descriptor(ldnode, context_1)
|
|
739
|
+
|
|
740
|
+
return lp.GetPropertyNodes(LDDataset.variable_measured(), filter, graph, context)
|
|
741
|
+
|
|
742
|
+
@staticmethod
|
|
743
|
+
def set_variable_measured_as_string(lp: LDNode, variable_measured: str, context: LDContext | None=None) -> Any:
|
|
744
|
+
return lp.SetProperty(LDDataset.variable_measured(), variable_measured, context)
|
|
745
|
+
|
|
746
|
+
@staticmethod
|
|
747
|
+
def set_variable_measured_as_property_value(lp: LDNode, variable_measured: LDNode, context: LDContext | None=None) -> Any:
|
|
748
|
+
return lp.SetProperty(LDDataset.variable_measured(), variable_measured, context)
|
|
749
|
+
|
|
750
|
+
@staticmethod
|
|
751
|
+
def set_variable_measured_as_property_values(lp: LDNode, variable_measured: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
752
|
+
return lp.SetProperty(LDDataset.variable_measured(), variable_measured, context)
|
|
753
|
+
|
|
754
|
+
@staticmethod
|
|
755
|
+
def get_main_entities(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
756
|
+
return lp.GetPropertyNodes(LDDataset.main_entity(), None, graph, context)
|
|
757
|
+
|
|
758
|
+
@staticmethod
|
|
759
|
+
def try_get_main_entity_as_workflow_protocol(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
760
|
+
def predicate(n: LDNode) -> bool:
|
|
761
|
+
return LDWorkflowProtocol.validate(n, context)
|
|
762
|
+
|
|
763
|
+
return try_find(predicate, LDDataset.get_main_entities(lp, graph, context))
|
|
764
|
+
|
|
765
|
+
@staticmethod
|
|
766
|
+
def set_main_entities(lp: LDNode, main_entities: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
767
|
+
return lp.SetProperty(LDDataset.main_entity(), main_entities, context)
|
|
768
|
+
|
|
769
|
+
@staticmethod
|
|
770
|
+
def gen_idinvesigation(__unit: None=None) -> str:
|
|
771
|
+
return "./"
|
|
772
|
+
|
|
773
|
+
@staticmethod
|
|
774
|
+
def gen_idstudy(identifier: str) -> str:
|
|
775
|
+
return ("studies/" + identifier) + "/"
|
|
776
|
+
|
|
777
|
+
@staticmethod
|
|
778
|
+
def gen_idassay(identifier: str) -> str:
|
|
779
|
+
return ("assays/" + identifier) + "/"
|
|
780
|
+
|
|
781
|
+
@staticmethod
|
|
782
|
+
def gen_idarcworkflow(identifier: str) -> str:
|
|
783
|
+
return ("workflows/" + identifier) + "/"
|
|
784
|
+
|
|
785
|
+
@staticmethod
|
|
786
|
+
def gen_idarcrun(identifier: str) -> str:
|
|
787
|
+
return ("runs/" + identifier) + "/"
|
|
788
|
+
|
|
789
|
+
@staticmethod
|
|
790
|
+
def validate(lp: LDNode, context: LDContext | None=None) -> bool:
|
|
791
|
+
return lp.HasType(LDDataset.schema_type(), context)
|
|
792
|
+
|
|
793
|
+
@staticmethod
|
|
794
|
+
def validate_investigation(lp: LDNode, context: LDContext | None=None) -> bool:
|
|
795
|
+
class ObjectExpr2233:
|
|
796
|
+
@property
|
|
797
|
+
def Equals(self) -> Callable[[str, str], bool]:
|
|
798
|
+
def _arrow2232(x: str, y: str) -> bool:
|
|
799
|
+
return x == y
|
|
800
|
+
|
|
801
|
+
return _arrow2232
|
|
802
|
+
|
|
803
|
+
@property
|
|
804
|
+
def GetHashCode(self) -> Callable[[str], int]:
|
|
805
|
+
return string_hash
|
|
806
|
+
|
|
807
|
+
return contains("Investigation", lp.AdditionalType, ObjectExpr2233()) if LDDataset.validate(lp, context) else False
|
|
808
|
+
|
|
809
|
+
@staticmethod
|
|
810
|
+
def validate_study(lp: LDNode, context: LDContext | None=None) -> bool:
|
|
811
|
+
class ObjectExpr2235:
|
|
812
|
+
@property
|
|
813
|
+
def Equals(self) -> Callable[[str, str], bool]:
|
|
814
|
+
def _arrow2234(x: str, y: str) -> bool:
|
|
815
|
+
return x == y
|
|
816
|
+
|
|
817
|
+
return _arrow2234
|
|
818
|
+
|
|
819
|
+
@property
|
|
820
|
+
def GetHashCode(self) -> Callable[[str], int]:
|
|
821
|
+
return string_hash
|
|
822
|
+
|
|
823
|
+
return contains("Study", lp.AdditionalType, ObjectExpr2235()) if LDDataset.validate(lp, context) else False
|
|
824
|
+
|
|
825
|
+
@staticmethod
|
|
826
|
+
def validate_assay(lp: LDNode, context: LDContext | None=None) -> bool:
|
|
827
|
+
class ObjectExpr2237:
|
|
828
|
+
@property
|
|
829
|
+
def Equals(self) -> Callable[[str, str], bool]:
|
|
830
|
+
def _arrow2236(x: str, y: str) -> bool:
|
|
831
|
+
return x == y
|
|
832
|
+
|
|
833
|
+
return _arrow2236
|
|
834
|
+
|
|
835
|
+
@property
|
|
836
|
+
def GetHashCode(self) -> Callable[[str], int]:
|
|
837
|
+
return string_hash
|
|
838
|
+
|
|
839
|
+
return contains("Assay", lp.AdditionalType, ObjectExpr2237()) if LDDataset.validate(lp, context) else False
|
|
840
|
+
|
|
841
|
+
@staticmethod
|
|
842
|
+
def validate_arcworkflow(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> bool:
|
|
843
|
+
class ObjectExpr2239:
|
|
844
|
+
@property
|
|
845
|
+
def Equals(self) -> Callable[[str, str], bool]:
|
|
846
|
+
def _arrow2238(x: str, y: str) -> bool:
|
|
847
|
+
return x == y
|
|
848
|
+
|
|
849
|
+
return _arrow2238
|
|
850
|
+
|
|
851
|
+
@property
|
|
852
|
+
def GetHashCode(self) -> Callable[[str], int]:
|
|
853
|
+
return string_hash
|
|
854
|
+
|
|
855
|
+
def _arrow2240(ld_0027: LDNode) -> bool:
|
|
856
|
+
return LDWorkflowProtocol.validate(ld_0027, context)
|
|
857
|
+
|
|
858
|
+
return exists(_arrow2240, LDDataset.get_main_entities(lp, graph, context)) if (contains("Workflow", lp.AdditionalType, ObjectExpr2239()) if LDDataset.validate(lp, context) else False) else False
|
|
859
|
+
|
|
860
|
+
@staticmethod
|
|
861
|
+
def validate_arcrun(lp: LDNode, context: LDContext | None=None) -> bool:
|
|
862
|
+
class ObjectExpr2242:
|
|
863
|
+
@property
|
|
864
|
+
def Equals(self) -> Callable[[str, str], bool]:
|
|
865
|
+
def _arrow2241(x: str, y: str) -> bool:
|
|
866
|
+
return x == y
|
|
867
|
+
|
|
868
|
+
return _arrow2241
|
|
869
|
+
|
|
870
|
+
@property
|
|
871
|
+
def GetHashCode(self) -> Callable[[str], int]:
|
|
872
|
+
return string_hash
|
|
873
|
+
|
|
874
|
+
return contains("Run", lp.AdditionalType, ObjectExpr2242()) if LDDataset.validate(lp, context) else False
|
|
875
|
+
|
|
876
|
+
@staticmethod
|
|
877
|
+
def create(id: str, identier: str | None=None, creators: Array[LDNode] | None=None, date_created: Any | None=None, date_published: Any | None=None, date_modified: Any | None=None, description: str | None=None, has_parts: Array[LDNode] | None=None, name: str | None=None, citations: Array[LDNode] | None=None, comments: Array[LDNode] | None=None, mentions: Array[LDNode] | None=None, url: str | None=None, abouts: Array[LDNode] | None=None, measurement_method: LDNode | None=None, measurement_technique: LDNode | None=None, variable_measureds: Array[LDNode] | None=None, context: LDContext | None=None) -> LDNode:
|
|
878
|
+
s: LDNode = LDNode(id, [LDDataset.schema_type()], None, context)
|
|
879
|
+
s.SetOptionalProperty(LDDataset.identifier(), identier, context)
|
|
880
|
+
s.SetOptionalProperty(LDDataset.creator(), creators, context)
|
|
881
|
+
s.SetOptionalProperty(LDDataset.date_created(), date_created, context)
|
|
882
|
+
s.SetOptionalProperty(LDDataset.date_published(), date_published, context)
|
|
883
|
+
s.SetOptionalProperty(LDDataset.date_modified(), date_modified, context)
|
|
884
|
+
s.SetOptionalProperty(LDDataset.description(), description, context)
|
|
885
|
+
s.SetOptionalProperty(LDDataset.has_part(), has_parts, context)
|
|
886
|
+
s.SetOptionalProperty(LDDataset.name(), name, context)
|
|
887
|
+
s.SetOptionalProperty(LDDataset.citation(), citations, context)
|
|
888
|
+
s.SetOptionalProperty(LDDataset.comment(), comments, context)
|
|
889
|
+
s.SetOptionalProperty(LDDataset.mentions(), mentions, context)
|
|
890
|
+
s.SetOptionalProperty(LDDataset.url(), url, context)
|
|
891
|
+
s.SetOptionalProperty(LDDataset.about(), abouts, context)
|
|
892
|
+
s.SetOptionalProperty(LDDataset.measurement_method(), measurement_method, context)
|
|
893
|
+
s.SetOptionalProperty(LDDataset.measurement_technique(), measurement_technique, context)
|
|
894
|
+
s.SetOptionalProperty(LDDataset.variable_measured(), variable_measureds, context)
|
|
895
|
+
return s
|
|
896
|
+
|
|
897
|
+
@staticmethod
|
|
898
|
+
def create_investigation(identifier: str, name: str, id: str | None=None, creators: Array[LDNode] | None=None, date_created: Any | None=None, date_published: Any | None=None, date_modified: Any | None=None, description: str | None=None, has_parts: Array[LDNode] | None=None, citations: Array[LDNode] | None=None, comments: Array[LDNode] | None=None, mentions: Array[LDNode] | None=None, url: str | None=None, context: LDContext | None=None) -> LDNode:
|
|
899
|
+
id_1: str = LDDataset.gen_idinvesigation() if (id is None) else id
|
|
900
|
+
s: LDNode = LDDataset.create(id_1, identifier, creators, date_created, date_published, date_modified, description, has_parts, name, citations, comments, mentions, url, None, None, None, None, context)
|
|
901
|
+
s.AdditionalType = ["Investigation"]
|
|
902
|
+
return s
|
|
903
|
+
|
|
904
|
+
@staticmethod
|
|
905
|
+
def create_study(identifier: str, id: str | None=None, creators: Array[LDNode] | None=None, date_created: Any | None=None, date_published: Any | None=None, date_modified: Any | None=None, description: str | None=None, has_parts: Array[LDNode] | None=None, name: str | None=None, citations: Array[LDNode] | None=None, variable_measureds: Array[LDNode] | None=None, comments: Array[LDNode] | None=None, url: str | None=None, abouts: Array[LDNode] | None=None, context: LDContext | None=None) -> LDNode:
|
|
906
|
+
id_1: str = LDDataset.gen_idstudy(identifier) if (id is None) else id
|
|
907
|
+
s: LDNode = LDDataset.create(id_1, identifier, creators, date_created, date_published, date_modified, description, has_parts, name, citations, comments, None, url, abouts, None, None, variable_measureds, context)
|
|
908
|
+
s.AdditionalType = ["Study"]
|
|
909
|
+
return s
|
|
910
|
+
|
|
911
|
+
@staticmethod
|
|
912
|
+
def create_assay(identifier: str, id: str | None=None, name: str | None=None, description: str | None=None, creators: Array[LDNode] | None=None, has_parts: Array[LDNode] | None=None, measurement_method: LDNode | None=None, measurement_technique: LDNode | None=None, variable_measureds: Array[LDNode] | None=None, abouts: Array[LDNode] | None=None, comments: Array[LDNode] | None=None, context: LDContext | None=None) -> LDNode:
|
|
913
|
+
id_1: str = LDDataset.gen_idassay(identifier) if (id is None) else id
|
|
914
|
+
s: LDNode = LDDataset.create(id_1, identifier, creators, None, None, None, description, has_parts, name, None, comments, None, None, abouts, measurement_method, measurement_technique, variable_measureds, context)
|
|
915
|
+
s.AdditionalType = ["Assay"]
|
|
916
|
+
return s
|
|
917
|
+
|
|
918
|
+
@staticmethod
|
|
919
|
+
def create_arcworkflow(identifier: str, main_entities: Array[LDNode], id: str | None=None, name: str | None=None, description: str | None=None, creators: Array[LDNode] | None=None, has_parts: Array[LDNode] | None=None, comments: Array[LDNode] | None=None, context: LDContext | None=None) -> LDNode:
|
|
920
|
+
id_1: str = LDDataset.gen_idarcworkflow(identifier) if (id is None) else id
|
|
921
|
+
s: LDNode = LDDataset.create(id_1, identifier, creators, None, None, None, description, has_parts, name, None, comments, None, None, None, None, None, None, context)
|
|
922
|
+
s.AdditionalType = ["Workflow"]
|
|
923
|
+
s.SetProperty(LDDataset.main_entity(), main_entities, context)
|
|
924
|
+
return s
|
|
925
|
+
|
|
926
|
+
@staticmethod
|
|
927
|
+
def create_arcrun(identifier: str, main_entities: Array[LDNode] | None=None, id: str | None=None, name: str | None=None, description: str | None=None, creators: Array[LDNode] | None=None, has_parts: Array[LDNode] | None=None, measurement_method: LDNode | None=None, measurement_technique: LDNode | None=None, variable_measureds: Array[LDNode] | None=None, abouts: Array[LDNode] | None=None, mentions: Array[LDNode] | None=None, comments: Array[LDNode] | None=None, context: LDContext | None=None) -> LDNode:
|
|
928
|
+
id_1: str = LDDataset.gen_idarcrun(identifier) if (id is None) else id
|
|
929
|
+
s: LDNode = LDDataset.create(id_1, identifier, creators, None, None, None, description, has_parts, name, None, comments, mentions, None, abouts, measurement_method, measurement_technique, variable_measureds, context)
|
|
930
|
+
s.AdditionalType = ["Run"]
|
|
931
|
+
def action(me: Array[LDNode]) -> None:
|
|
932
|
+
s.SetProperty(LDDataset.main_entity(), me, context)
|
|
933
|
+
|
|
934
|
+
iterate(action, to_array(main_entities))
|
|
935
|
+
conforms_to_refs: Array[LDRef] = [LDRef("https://w3id.org/ro/wfrun/process/0.5"), LDRef("https://w3id.org/ro/wfrun/workflow/0.5"), LDRef("https://w3id.org/workflowhub/workflow-ro-crate/1.0")]
|
|
936
|
+
s.SetProperty(LDDataset.conforms_to(), conforms_to_refs, context)
|
|
937
|
+
return s
|
|
938
|
+
|
|
939
|
+
|
|
940
|
+
LDDataset_reflection = _expr2246
|
|
941
|
+
|
|
942
|
+
__all__ = ["LDDataset_reflection"]
|
|
943
|
+
|