arctrl 3.0.0__py3-none-any.whl

arctrl/py/Core/Helper/regex.py

@@ -0,0 +1,554 @@
+from typing import Any
+from ...fable_modules.fable_library.int32 import parse
+from ...fable_modules.fable_library.option import map
+from ...fable_modules.fable_library.reg_exp import (match, create, get_item, groups)
+from ...fable_modules.fable_library.string_ import replace
+
+def Pattern_handleGroupPatterns(pattern: str) -> str:
+    return replace(pattern, "(?<", "(?P<")
+
+
+Pattern_ExcelNumberFormat: str = ("\"(?<" + "numberFormat") + ">(.*?))\""
+
+Pattern_TermAnnotationShortPattern: str = ((("(?<" + "idspace") + ">\\w+?):(?<") + "localid") + ">\\w+)"
+
+Pattern_TermAnnotationURIPattern: str = ((("http://purl.obolibrary.org/obo/(?<" + "idspace") + ">\\w+?)_(?<") + "localid") + ">\\w+)"
+
+Pattern_TermAnnotationURIPattern_lessRestrictive: str = (((".*\\/(?<" + "idspace") + ">\\w+?)[:_](?<") + "localid") + ">\\w+)"
+
+Pattern_TermAnnotationURIPattern_MS_RO_PO: str = (((".*252F(?<" + "idspace") + ">\\w+?)_(?<") + "localid") + ">\\w+)"
+
+Pattern_IOTypePattern: str = ("(Input|Output)\\s*\\[(?<" + "iotype") + ">.+)\\]"
+
+Pattern_InputPattern: str = ("Input\\s*\\[(?<" + "iotype") + ">.+)\\]"
+
+Pattern_OutputPattern: str = ("Output\\s*\\[(?<" + "iotype") + ">.+)\\]"
+
+Pattern_CommentPattern: str = ("Comment\\s*\\[(?<" + "commentKey") + ">.+)\\]"
+
+def ActivePatterns__007CRegex_007C__007C(pattern: str, input: str) -> Any | None:
+    m: Any = match(create(Pattern_handleGroupPatterns(pattern)), input.strip())
+    if m is not None:
+        return m
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CReferenceColumnHeader_007C__007C(input: str) -> dict[str, Any] | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C("(Term Source REF|Term Accession Number)\\s*\\((?<id>.*)\\)", input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        return {
+            "Annotation": get_item(groups(r), "id") or ""
+        }
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CTermColumn_007C__007C(input: str) -> dict[str, Any] | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C("(?<termcolumntype>.+?)\\s*\\[(?<termname>.+)\\]", input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        return {
+            "TermColumnType": get_item(groups(r), "termcolumntype") or "",
+            "TermName": get_item(groups(r), "termname") or ""
+        }
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CUnitColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C("Unit", input)
+    if active_pattern_result is not None:
+        o: Any = active_pattern_result
+        return o[0]
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CParameterColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTermColumn_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        match_value: str = r["TermColumnType"]
+        (pattern_matching_result,) = (None,)
+        if match_value == "Parameter":
+            pattern_matching_result = 0
+
+        elif match_value == "Parameter Value":
+            pattern_matching_result = 0
+
+        else: 
+            pattern_matching_result = 1
+
+        if pattern_matching_result == 0:
+            return r["TermName"]
+
+        elif pattern_matching_result == 1:
+            return None
+
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CFactorColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTermColumn_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        match_value: str = r["TermColumnType"]
+        (pattern_matching_result,) = (None,)
+        if match_value == "Factor":
+            pattern_matching_result = 0
+
+        elif match_value == "Factor Value":
+            pattern_matching_result = 0
+
+        else: 
+            pattern_matching_result = 1
+
+        if pattern_matching_result == 0:
+            return r["TermName"]
+
+        elif pattern_matching_result == 1:
+            return None
+
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CCharacteristicColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTermColumn_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        match_value: str = r["TermColumnType"]
+        (pattern_matching_result,) = (None,)
+        if match_value == "Characteristic":
+            pattern_matching_result = 0
+
+        elif match_value == "Characteristics":
+            pattern_matching_result = 0
+
+        elif match_value == "Characteristics Value":
+            pattern_matching_result = 0
+
+        else: 
+            pattern_matching_result = 1
+
+        if pattern_matching_result == 0:
+            return r["TermName"]
+
+        elif pattern_matching_result == 1:
+            return None
+
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CComponentColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTermColumn_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        match_value: str = r["TermColumnType"]
+        (pattern_matching_result,) = (None,)
+        if match_value == "Component":
+            pattern_matching_result = 0
+
+        elif match_value == "Component Value":
+            pattern_matching_result = 0
+
+        else: 
+            pattern_matching_result = 1
+
+        if pattern_matching_result == 0:
+            return r["TermName"]
+
+        elif pattern_matching_result == 1:
+            return None
+
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CTermAnnotationShort_007C__007C(input: str) -> dict[str, Any] | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationShortPattern, input)
+    if active_pattern_result is not None:
+        value: Any = active_pattern_result
+        return {
+            "IDSpace": get_item(groups(value), "idspace") or "",
+            "LocalID": get_item(groups(value), "localid") or ""
+        }
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CTermAnnotation_007C__007C(input: str) -> dict[str, Any] | None:
+    (pattern_matching_result, value) = (None, None)
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationShortPattern, input)
+    if active_pattern_result is not None:
+        pattern_matching_result = 0
+        value = active_pattern_result
+
+    else: 
+        active_pattern_result_1: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationURIPattern, input)
+        if active_pattern_result_1 is not None:
+            pattern_matching_result = 0
+            value = active_pattern_result_1
+
+        else: 
+            active_pattern_result_2: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationURIPattern_lessRestrictive, input)
+            if active_pattern_result_2 is not None:
+                pattern_matching_result = 0
+                value = active_pattern_result_2
+
+            else: 
+                active_pattern_result_3: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationURIPattern_MS_RO_PO, input)
+                if active_pattern_result_3 is not None:
+                    pattern_matching_result = 0
+                    value = active_pattern_result_3
+
+                else: 
+                    pattern_matching_result = 1
+
+
+
+
+    if pattern_matching_result == 0:
+        return {
+            "IDSpace": get_item(groups(value), "idspace") or "",
+            "LocalID": get_item(groups(value), "localid") or ""
+        }
+
+    elif pattern_matching_result == 1:
+        return None
+
+
+
+def ActivePatterns__007CTSRColumnHeader_007C__007C(input: str) -> dict[str, Any] | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C("Term Source REF\\s*\\((?<id>.*)\\)", input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        match_value: str = get_item(groups(r), "id") or ""
+        active_pattern_result_1: dict[str, Any] | None = ActivePatterns__007CTermAnnotation_007C__007C(match_value)
+        if active_pattern_result_1 is not None:
+            r_1: dict[str, Any] = active_pattern_result_1
+            return r_1
+
+        else: 
+            return {
+                "IDSpace": "",
+                "LocalID": ""
+            }
+
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CTANColumnHeader_007C__007C(input: str) -> dict[str, Any] | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C("Term Accession Number\\s*\\((?<id>.*)\\)", input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        match_value: str = get_item(groups(r), "id") or ""
+        active_pattern_result_1: dict[str, Any] | None = ActivePatterns__007CTermAnnotation_007C__007C(match_value)
+        if active_pattern_result_1 is not None:
+            r_1: dict[str, Any] = active_pattern_result_1
+            return r_1
+
+        else: 
+            return {
+                "IDSpace": "",
+                "LocalID": ""
+            }
+
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CInputColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_InputPattern, input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        return get_item(groups(r), "iotype") or ""
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007COutputColumnHeader_007C__007C(input: str) -> str | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_OutputPattern, input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        return get_item(groups(r), "iotype") or ""
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CAutoGeneratedTableName_007C__007C(input: str) -> int | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C("^New\\sTable\\s(?<number>\\d+)$", input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        return parse(get_item(groups(r), "number") or "", 511, False, 32)
+
+    else: 
+        return None
+
+
+
+def ActivePatterns__007CComment_007C__007C(input: str) -> str | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_CommentPattern, input)
+    if active_pattern_result is not None:
+        r: Any = active_pattern_result
+        return get_item(groups(r), "commentKey") or ""
+
+    else: 
+        return None
+
+
+
+def try_parse_reference_column_header(str_1: str) -> dict[str, Any] | None:
+    match_value: str = str_1.strip()
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CReferenceColumnHeader_007C__007C(match_value)
+    if active_pattern_result is not None:
+        v: dict[str, Any] = active_pattern_result
+        return v
+
+    else: 
+        return None
+
+
+
+def try_parse_term_annotation_short(str_1: str) -> dict[str, Any] | None:
+    match_value: str = str_1.strip()
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationShortPattern, match_value)
+    if active_pattern_result is not None:
+        value: Any = active_pattern_result
+        return {
+            "IDSpace": get_item(groups(value), "idspace") or "",
+            "LocalID": get_item(groups(value), "localid") or ""
+        }
+
+    else: 
+        return None
+
+
+
+def try_parse_term_annotation(str_1: str) -> dict[str, Any] | None:
+    match_value: str = str_1.strip()
+    (pattern_matching_result, value) = (None, None)
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationShortPattern, match_value)
+    if active_pattern_result is not None:
+        pattern_matching_result = 0
+        value = active_pattern_result
+
+    else: 
+        active_pattern_result_1: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationURIPattern, match_value)
+        if active_pattern_result_1 is not None:
+            pattern_matching_result = 0
+            value = active_pattern_result_1
+
+        else: 
+            active_pattern_result_2: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationURIPattern_lessRestrictive, match_value)
+            if active_pattern_result_2 is not None:
+                pattern_matching_result = 0
+                value = active_pattern_result_2
+
+            else: 
+                active_pattern_result_3: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_TermAnnotationURIPattern_MS_RO_PO, match_value)
+                if active_pattern_result_3 is not None:
+                    pattern_matching_result = 0
+                    value = active_pattern_result_3
+
+                else: 
+                    pattern_matching_result = 1
+
+
+
+
+    if pattern_matching_result == 0:
+        return {
+            "IDSpace": get_item(groups(value), "idspace") or "",
+            "LocalID": get_item(groups(value), "localid") or ""
+        }
+
+    elif pattern_matching_result == 1:
+        return None
+
+
+
+def try_get_term_annotation_short_string(str_1: str) -> str | None:
+    def mapping(r: dict[str, Any], str_1: Any=str_1) -> str:
+        return (r["IDSpace"] + ":") + r["LocalID"]
+
+    return map(mapping, try_parse_term_annotation(str_1))
+
+
+def get_term_annotation_short_string(str_1: str) -> str:
+    match_value: str | None = try_get_term_annotation_short_string(str_1)
+    if match_value is None:
+        raise Exception(("Unable to parse \'" + str_1) + "\' to term accession.")
+
+    else: 
+        return match_value
+
+
+
+def try_parse_excel_number_format(header_str: str) -> str | None:
+    match_value: str = header_str.strip()
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_ExcelNumberFormat, match_value)
+    if active_pattern_result is not None:
+        value: Any = active_pattern_result
+        return get_item(groups(value), "numberFormat") or ""
+
+    else: 
+        return None
+
+
+
+def try_parse_iotype_header(header_str: str) -> str | None:
+    match_value: str = header_str.strip()
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(Pattern_IOTypePattern, match_value)
+    if active_pattern_result is not None:
+        value: Any = active_pattern_result
+        return get_item(groups(value), "iotype") or ""
+
+    else: 
+        return None
+
+
+
+def try_parse_term_column(input: str) -> dict[str, Any] | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTermColumn_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_unit_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007CUnitColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_parameter_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007CParameterColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_factor_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007CFactorColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_characteristic_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007CCharacteristicColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_component_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007CComponentColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_tsrcolumn_header(input: str) -> dict[str, Any] | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTSRColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_tancolumn_header(input: str) -> dict[str, Any] | None:
+    active_pattern_result: dict[str, Any] | None = ActivePatterns__007CTANColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: dict[str, Any] = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_input_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007CInputColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+def try_parse_output_column_header(input: str) -> str | None:
+    active_pattern_result: str | None = ActivePatterns__007COutputColumnHeader_007C__007C(input)
+    if active_pattern_result is not None:
+        r: str = active_pattern_result
+        return r
+
+    else: 
+        return None
+
+
+
+__all__ = ["Pattern_handleGroupPatterns", "Pattern_ExcelNumberFormat", "Pattern_TermAnnotationShortPattern", "Pattern_TermAnnotationURIPattern", "Pattern_TermAnnotationURIPattern_lessRestrictive", "Pattern_TermAnnotationURIPattern_MS_RO_PO", "Pattern_IOTypePattern", "Pattern_InputPattern", "Pattern_OutputPattern", "Pattern_CommentPattern", "ActivePatterns__007CRegex_007C__007C", "ActivePatterns__007CReferenceColumnHeader_007C__007C", "ActivePatterns__007CTermColumn_007C__007C", "ActivePatterns__007CUnitColumnHeader_007C__007C", "ActivePatterns__007CParameterColumnHeader_007C__007C", "ActivePatterns__007CFactorColumnHeader_007C__007C", "ActivePatterns__007CCharacteristicColumnHeader_007C__007C", "ActivePatterns__007CComponentColumnHeader_007C__007C", "ActivePatterns__007CTermAnnotationShort_007C__007C", "ActivePatterns__007CTermAnnotation_007C__007C", "ActivePatterns__007CTSRColumnHeader_007C__007C", "ActivePatterns__007CTANColumnHeader_007C__007C", "ActivePatterns__007CInputColumnHeader_007C__007C", "ActivePatterns__007COutputColumnHeader_007C__007C", "ActivePatterns__007CAutoGeneratedTableName_007C__007C", "ActivePatterns__007CComment_007C__007C", "try_parse_reference_column_header", "try_parse_term_annotation_short", "try_parse_term_annotation", "try_get_term_annotation_short_string", "get_term_annotation_short_string", "try_parse_excel_number_format", "try_parse_iotype_header", "try_parse_term_column", "try_parse_unit_column_header", "try_parse_parameter_column_header", "try_parse_factor_column_header", "try_parse_characteristic_column_header", "try_parse_component_column_header", "try_parse_tsrcolumn_header", "try_parse_tancolumn_header", "try_parse_input_column_header", "try_parse_output_column_header"]
+

arctrl/py/Core/Helper/sem_ver.py

@@ -0,0 +1,71 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import Any
+from ...fable_modules.fable_library.int32 import parse
+from ...fable_modules.fable_library.option import value as value_3
+from ...fable_modules.fable_library.reflection import (TypeInfo, int32_type, string_type, option_type, record_type)
+from ...fable_modules.fable_library.reg_exp import (groups, get_item)
+from ...fable_modules.fable_library.string_ import (to_text, printf)
+from ...fable_modules.fable_library.system_text import (StringBuilder__ctor, StringBuilder__Append_Z721C83C5)
+from ...fable_modules.fable_library.types import (Record, to_string)
+from ...fable_modules.fable_library.util import ignore
+from .regex import ActivePatterns__007CRegex_007C__007C
+
+SemVerAux_Pattern: str = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$"
+
+def _expr841() -> TypeInfo:
+    return record_type("ARCtrl.Helper.SemVer.SemVer", [], SemVer, lambda: [("Major", int32_type), ("Minor", int32_type), ("Patch", int32_type), ("PreRelease", option_type(string_type)), ("Metadata", option_type(string_type))])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class SemVer(Record):
+    Major: int
+    Minor: int
+    Patch: int
+    PreRelease: str | None
+    Metadata: str | None
+
+SemVer_reflection = _expr841
+
+def SemVer_make(major: int, minor: int, patch: int, pre: str | None=None, meta: str | None=None) -> SemVer:
+    return SemVer(major, minor, patch, pre, meta)
+
+
+def SemVer_create_Z55658624(major: int, minor: int, patch: int, pre: str | None=None, meta: str | None=None) -> SemVer:
+    return SemVer(major, minor, patch, pre, meta)
+
+
+def SemVer_tryOfString_Z721C83C5(str_1: str) -> SemVer | None:
+    active_pattern_result: Any | None = ActivePatterns__007CRegex_007C__007C(SemVerAux_Pattern, str_1)
+    if active_pattern_result is not None:
+        m: Any = active_pattern_result
+        g: Any = groups(m)
+        return SemVer_create_Z55658624(parse(get_item(g, "major") or "", 511, False, 32), parse(get_item(g, "minor") or "", 511, False, 32), parse(get_item(g, "patch") or "", 511, False, 32), (get_item(g, "pre") or "") if (get_item(g, "pre") is not None) else None, (get_item(g, "build") or "") if (get_item(g, "build") is not None) else None)
+
+    else: 
+        return None
+
+
+
+def SemVer__AsString(this: SemVer) -> str:
+    sb: Any = StringBuilder__ctor()
+    ignore(StringBuilder__Append_Z721C83C5(sb, to_text(printf("%i.%i.%i"))(this.Major)(this.Minor)(this.Patch)))
+    if this.PreRelease is not None:
+        def _arrow848(__unit: None=None, this: Any=this) -> str:
+            arg_3: str = value_3(this.PreRelease)
+            return to_text(printf("-%s"))(arg_3)
+
+        ignore(StringBuilder__Append_Z721C83C5(sb, _arrow848()))
+
+    if this.Metadata is not None:
+        def _arrow850(__unit: None=None, this: Any=this) -> str:
+            arg_4: str = value_3(this.Metadata)
+            return to_text(printf("+%s"))(arg_4)
+
+        ignore(StringBuilder__Append_Z721C83C5(sb, _arrow850()))
+
+    return to_string(sb)
+
+
+__all__ = ["SemVerAux_Pattern", "SemVer_reflection", "SemVer_make", "SemVer_create_Z55658624", "SemVer_tryOfString_Z721C83C5", "SemVer__AsString"]
+