arctrl 3.0.0__py3-none-any.whl

arctrl/py/Core/Table/composite_cell.py

@@ -0,0 +1,319 @@
+from __future__ import annotations
+from typing import Any
+from ...fable_modules.fable_library.option import default_arg
+from ...fable_modules.fable_library.reflection import (TypeInfo, string_type, union_type)
+from ...fable_modules.fable_library.types import (Array, Union)
+from ..data import (Data, Data_reflection)
+from ..ontology_annotation import (OntologyAnnotation, OntologyAnnotation_reflection)
+from .composite_header import CompositeHeader
+
+def _expr1147() -> TypeInfo:
+    return union_type("ARCtrl.CompositeCell", [], CompositeCell, lambda: [[("Item", OntologyAnnotation_reflection())], [("Item", string_type)], [("Item1", string_type), ("Item2", OntologyAnnotation_reflection())], [("Item", Data_reflection())]])
+
+
+class CompositeCell(Union):
+    def __init__(self, tag: int, *fields: Any) -> None:
+        super().__init__()
+        self.tag: int = tag or 0
+        self.fields: Array[Any] = list(fields)
+
+    @staticmethod
+    def cases() -> list[str]:
+        return ["Term", "FreeText", "Unitized", "Data"]
+
+    @property
+    def is_unitized(self, __unit: None=None) -> bool:
+        this: CompositeCell = self
+        return True if (this.tag == 2) else False
+
+    @property
+    def is_term(self, __unit: None=None) -> bool:
+        this: CompositeCell = self
+        return True if (this.tag == 0) else False
+
+    @property
+    def is_free_text(self, __unit: None=None) -> bool:
+        this: CompositeCell = self
+        return True if (this.tag == 1) else False
+
+    @property
+    def is_data(self, __unit: None=None) -> bool:
+        this: CompositeCell = self
+        return True if (this.tag == 3) else False
+
+    def GetEmptyCell(self, __unit: None=None) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 2:
+            return CompositeCell.empty_unitized()
+
+        elif this.tag == 1:
+            return CompositeCell.empty_free_text()
+
+        elif this.tag == 3:
+            return CompositeCell.empty_data()
+
+        else: 
+            return CompositeCell.empty_term()
+
+
+    def GetContent(self, __unit: None=None) -> Array[str]:
+        this: CompositeCell = self
+        if this.tag == 0:
+            oa: OntologyAnnotation = this.fields[0]
+            return [oa.NameText, default_arg(oa.TermSourceREF, ""), default_arg(oa.TermAccessionNumber, "")]
+
+        elif this.tag == 2:
+            oa_1: OntologyAnnotation = this.fields[1]
+            return [this.fields[0], oa_1.NameText, default_arg(oa_1.TermSourceREF, ""), default_arg(oa_1.TermAccessionNumber, "")]
+
+        elif this.tag == 3:
+            d: Data = this.fields[0]
+            return [default_arg(d.Name, ""), default_arg(d.Format, ""), default_arg(d.SelectorFormat, "")]
+
+        else: 
+            return [this.fields[0]]
+
+
+    def ToUnitizedCell(self, __unit: None=None) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 1:
+            return CompositeCell(2, "", OntologyAnnotation.create(this.fields[0]))
+
+        elif this.tag == 0:
+            return CompositeCell(2, "", this.fields[0])
+
+        elif this.tag == 3:
+            return CompositeCell(2, "", OntologyAnnotation.create(this.fields[0].NameText))
+
+        else: 
+            return this
+
+
+    def ToTermCell(self, __unit: None=None) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 2:
+            return CompositeCell(0, this.fields[1])
+
+        elif this.tag == 1:
+            return CompositeCell(0, OntologyAnnotation.create(this.fields[0]))
+
+        elif this.tag == 3:
+            return CompositeCell(0, OntologyAnnotation(this.fields[0].NameText))
+
+        else: 
+            return this
+
+
+    def ToFreeTextCell(self, __unit: None=None) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 0:
+            return CompositeCell(1, this.fields[0].NameText)
+
+        elif this.tag == 2:
+            return CompositeCell(1, this.fields[1].NameText)
+
+        elif this.tag == 3:
+            return CompositeCell(1, this.fields[0].NameText)
+
+        else: 
+            return this
+
+
+    def ToDataCell(self, __unit: None=None) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 1:
+            return CompositeCell.create_data_from_string(this.fields[0])
+
+        elif this.tag == 0:
+            return CompositeCell.create_data_from_string(this.fields[0].NameText)
+
+        elif this.tag == 3:
+            return this
+
+        else: 
+            return CompositeCell.create_data_from_string(this.fields[1].NameText)
+
+
+    @property
+    def AsUnitized(self, __unit: None=None) -> tuple[str, OntologyAnnotation]:
+        this: CompositeCell = self
+        if this.tag == 2:
+            return (this.fields[0], this.fields[1])
+
+        else: 
+            raise Exception("Not a Unitized cell.")
+
+
+    @property
+    def AsTerm(self, __unit: None=None) -> OntologyAnnotation:
+        this: CompositeCell = self
+        if this.tag == 0:
+            return this.fields[0]
+
+        else: 
+            raise Exception("Not a Term Cell.")
+
+
+    @property
+    def AsFreeText(self, __unit: None=None) -> str:
+        this: CompositeCell = self
+        if this.tag == 1:
+            return this.fields[0]
+
+        else: 
+            raise Exception("Not a FreeText Cell.")
+
+
+    @property
+    def AsData(self, __unit: None=None) -> Data:
+        this: CompositeCell = self
+        if this.tag == 3:
+            return this.fields[0]
+
+        else: 
+            raise Exception("Not a Data Cell.")
+
+
+    @staticmethod
+    def create_term(oa: OntologyAnnotation) -> CompositeCell:
+        return CompositeCell(0, oa)
+
+    @staticmethod
+    def create_term_from_string(name: str | None=None, tsr: str | None=None, tan: str | None=None) -> CompositeCell:
+        return CompositeCell(0, OntologyAnnotation.create(name, tsr, tan))
+
+    @staticmethod
+    def create_unitized(value: str, oa: OntologyAnnotation | None=None) -> CompositeCell:
+        return CompositeCell(2, value, default_arg(oa, OntologyAnnotation()))
+
+    @staticmethod
+    def create_unitized_from_string(value: str, name: str | None=None, tsr: str | None=None, tan: str | None=None) -> CompositeCell:
+        tupled_arg: tuple[str, OntologyAnnotation] = (value, OntologyAnnotation.create(name, tsr, tan))
+        return CompositeCell(2, tupled_arg[0], tupled_arg[1])
+
+    @staticmethod
+    def create_free_text(value: str) -> CompositeCell:
+        return CompositeCell(1, value)
+
+    @staticmethod
+    def create_data(d: Data) -> CompositeCell:
+        return CompositeCell(3, d)
+
+    @staticmethod
+    def create_data_from_string(value: str, format: str | None=None, selector_format: str | None=None) -> CompositeCell:
+        return CompositeCell(3, Data.create(None, value, None, format, selector_format))
+
+    @staticmethod
+    def empty_term() -> CompositeCell:
+        return CompositeCell(0, OntologyAnnotation())
+
+    @staticmethod
+    def empty_free_text() -> CompositeCell:
+        return CompositeCell(1, "")
+
+    @staticmethod
+    def empty_unitized() -> CompositeCell:
+        return CompositeCell(2, "", OntologyAnnotation())
+
+    @staticmethod
+    def empty_data() -> CompositeCell:
+        return CompositeCell(3, Data.create())
+
+    def UpdateWithOA(self, oa: OntologyAnnotation) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 2:
+            return CompositeCell.create_unitized(this.fields[0], oa)
+
+        elif this.tag == 1:
+            return CompositeCell.create_free_text(oa.NameText)
+
+        elif this.tag == 3:
+            d: Data = this.fields[0]
+            d.Name = oa.NameText
+            return CompositeCell(3, d)
+
+        else: 
+            return CompositeCell.create_term(oa)
+
+
+    @staticmethod
+    def update_with_oa(oa: OntologyAnnotation, cell: CompositeCell) -> CompositeCell:
+        return cell.UpdateWithOA(oa)
+
+    def __str__(self, __unit: None=None) -> str:
+        this: CompositeCell = self
+        if this.tag == 1:
+            return this.fields[0]
+
+        elif this.tag == 2:
+            return ((("" + this.fields[0]) + " ") + this.fields[1].NameText) + ""
+
+        elif this.tag == 3:
+            return ("" + this.fields[0].NameText) + ""
+
+        else: 
+            return ("" + this.fields[0].NameText) + ""
+
+
+    def Copy(self, __unit: None=None) -> CompositeCell:
+        this: CompositeCell = self
+        if this.tag == 1:
+            return CompositeCell(1, this.fields[0])
+
+        elif this.tag == 2:
+            return CompositeCell(2, this.fields[0], this.fields[1].Copy())
+
+        elif this.tag == 3:
+            return CompositeCell(3, this.fields[0].Copy())
+
+        else: 
+            return CompositeCell(0, this.fields[0].Copy())
+
+
+    def ValidateAgainstHeader(self, header: CompositeHeader, raise_exception: bool | None=None) -> bool:
+        this: CompositeCell = self
+        raise_exeption: bool = default_arg(raise_exception, False)
+        cell: CompositeCell = this
+        if (True if cell.is_data else cell.is_free_text) if header.IsDataColumn else False:
+            return True
+
+        elif header.IsDataColumn:
+            if raise_exeption:
+                raise Exception(((("Invalid combination of header `" + str(header)) + "` and cell `") + str(cell)) + "`, Data header should have either Data or Freetext cells")
+
+            return False
+
+        elif (True if cell.is_term else cell.is_unitized) if header.IsTermColumn else False:
+            return True
+
+        elif cell.is_free_text if (not header.IsTermColumn) else False:
+            return True
+
+        else: 
+            if raise_exeption:
+                raise Exception(((("Invalid combination of header `" + str(header)) + "` and cell `") + str(cell)) + "`")
+
+            return False
+
+
+    @staticmethod
+    def term(oa: OntologyAnnotation) -> CompositeCell:
+        return CompositeCell(0, oa)
+
+    @staticmethod
+    def free_text(s: str) -> CompositeCell:
+        return CompositeCell(1, s)
+
+    @staticmethod
+    def unitized(v: str, oa: OntologyAnnotation) -> CompositeCell:
+        return CompositeCell(2, v, oa)
+
+    @staticmethod
+    def data(d: Data) -> CompositeCell:
+        return CompositeCell(3, d)
+
+
+CompositeCell_reflection = _expr1147
+
+__all__ = ["CompositeCell_reflection"]
+

arctrl/py/Core/Table/composite_column.py

@@ -0,0 +1,73 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from ...fable_modules.fable_library.option import default_arg
+from ...fable_modules.fable_library.reflection import (TypeInfo, array_type, record_type)
+from ...fable_modules.fable_library.seq import (exists, to_array, delay, collect, singleton, empty, is_empty, fold)
+from ...fable_modules.fable_library.types import (Array, Record)
+from ...fable_modules.fable_library.util import IEnumerable_1
+from ..ontology_annotation import OntologyAnnotation
+from .composite_cell import (CompositeCell, CompositeCell_reflection)
+from .composite_header import (CompositeHeader, CompositeHeader_reflection)
+
+def _expr1142() -> TypeInfo:
+    return record_type("ARCtrl.CompositeColumn", [], CompositeColumn, lambda: [("Header", CompositeHeader_reflection()), ("Cells", array_type(CompositeCell_reflection()))])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class CompositeColumn(Record):
+    Header: CompositeHeader
+    Cells: Array[CompositeCell]
+    @staticmethod
+    def create(header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> CompositeColumn:
+        return CompositeColumn(header, default_arg(cells, []))
+
+    def Validate(self, raise_exception: bool | None=None) -> bool:
+        this: CompositeColumn = self
+        def predicate(c: CompositeCell) -> bool:
+            return not c.ValidateAgainstHeader(this.Header, raise_exception)
+
+        return not exists(predicate, this.Cells)
+
+    def TryGetColumnUnits(self, __unit: None=None) -> Array[OntologyAnnotation] | None:
+        this: CompositeColumn = self
+        def _arrow1141(__unit: None=None) -> IEnumerable_1[OntologyAnnotation]:
+            def _arrow1140(cell: CompositeCell) -> IEnumerable_1[OntologyAnnotation]:
+                return singleton(cell.AsUnitized[1]) if cell.is_unitized else empty()
+
+            return collect(_arrow1140, this.Cells)
+
+        arr: Array[OntologyAnnotation] = list(to_array(delay(_arrow1141)))
+        return None if is_empty(arr) else arr
+
+    def GetDefaultEmptyCell(self, __unit: None=None) -> CompositeCell:
+        this: CompositeColumn = self
+        if not this.Header.IsTermColumn:
+            return CompositeCell.empty_free_text()
+
+        else: 
+            pattern_input: tuple[int, int]
+            arg: tuple[int, int] = (0, 0)
+            def folder(tupled_arg: tuple[int, int], cell: CompositeCell) -> tuple[int, int]:
+                units: int = tupled_arg[0] or 0
+                terms: int = tupled_arg[1] or 0
+                if cell.is_unitized:
+                    return (units + 1, terms)
+
+                else: 
+                    return (units, terms + 1)
+
+
+            pattern_input = fold(folder, (arg[0], arg[1]), this.Cells)
+            return CompositeCell.empty_term() if (pattern_input[1] >= pattern_input[0]) else CompositeCell.empty_unitized()
+
+
+    @property
+    def IsUnique(self, __unit: None=None) -> bool:
+        this: CompositeColumn = self
+        return this.Header.IsUnique
+
+
+CompositeColumn_reflection = _expr1142
+
+__all__ = ["CompositeColumn_reflection"]
+