arctrl 3.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (511) hide show
  1. arctrl/__init__.py +23 -0
  2. arctrl/cwl.py +12 -0
  3. arctrl/py/CWL/__init__.py +0 -0
  4. arctrl/py/CWL/cwlprocessing_unit.py +221 -0
  5. arctrl/py/CWL/cwltypes.py +364 -0
  6. arctrl/py/CWL/decode.py +3532 -0
  7. arctrl/py/CWL/encode.py +1905 -0
  8. arctrl/py/CWL/expression_tool_description.py +192 -0
  9. arctrl/py/CWL/hash_helpers.py +60 -0
  10. arctrl/py/CWL/inputs.py +122 -0
  11. arctrl/py/CWL/operation_description.py +169 -0
  12. arctrl/py/CWL/outputs.py +171 -0
  13. arctrl/py/CWL/parameter_reference.py +74 -0
  14. arctrl/py/CWL/requirements.py +350 -0
  15. arctrl/py/CWL/tool_description.py +192 -0
  16. arctrl/py/CWL/workflow_description.py +181 -0
  17. arctrl/py/CWL/workflow_steps.py +354 -0
  18. arctrl/py/Contract/__init__.py +0 -0
  19. arctrl/py/Contract/arc.py +89 -0
  20. arctrl/py/Contract/arc_assay.py +125 -0
  21. arctrl/py/Contract/arc_investigation.py +88 -0
  22. arctrl/py/Contract/arc_run.py +291 -0
  23. arctrl/py/Contract/arc_study.py +126 -0
  24. arctrl/py/Contract/arc_workflow.py +213 -0
  25. arctrl/py/Contract/contract.py +153 -0
  26. arctrl/py/Contract/datamap.py +396 -0
  27. arctrl/py/Contract/git.py +116 -0
  28. arctrl/py/Contract/license.py +58 -0
  29. arctrl/py/Contract/validation_packages_config.py +107 -0
  30. arctrl/py/ContractIO/__init__.py +0 -0
  31. arctrl/py/ContractIO/contract_io.py +350 -0
  32. arctrl/py/ContractIO/file_system_helper.py +264 -0
  33. arctrl/py/Conversion/__init__.py +0 -0
  34. arctrl/py/Conversion/assay.py +151 -0
  35. arctrl/py/Conversion/basic.py +559 -0
  36. arctrl/py/Conversion/column_index.py +91 -0
  37. arctrl/py/Conversion/datamap.py +36 -0
  38. arctrl/py/Conversion/date_time.py +32 -0
  39. arctrl/py/Conversion/investigation.py +171 -0
  40. arctrl/py/Conversion/person.py +148 -0
  41. arctrl/py/Conversion/process.py +828 -0
  42. arctrl/py/Conversion/run.py +367 -0
  43. arctrl/py/Conversion/scholarly_article.py +163 -0
  44. arctrl/py/Conversion/study.py +99 -0
  45. arctrl/py/Conversion/table.py +229 -0
  46. arctrl/py/Conversion/workflow.py +680 -0
  47. arctrl/py/Core/Helper/__init__.py +0 -0
  48. arctrl/py/Core/Helper/collections_.py +512 -0
  49. arctrl/py/Core/Helper/date_time.py +26 -0
  50. arctrl/py/Core/Helper/hash_codes.py +60 -0
  51. arctrl/py/Core/Helper/identifier.py +290 -0
  52. arctrl/py/Core/Helper/orcid.py +42 -0
  53. arctrl/py/Core/Helper/printer.py +13 -0
  54. arctrl/py/Core/Helper/regex.py +554 -0
  55. arctrl/py/Core/Helper/sem_ver.py +71 -0
  56. arctrl/py/Core/Helper/url.py +148 -0
  57. arctrl/py/Core/Process/__init__.py +0 -0
  58. arctrl/py/Core/Process/column_index.py +280 -0
  59. arctrl/py/Core/Process/component.py +200 -0
  60. arctrl/py/Core/Process/factor.py +151 -0
  61. arctrl/py/Core/Process/factor_value.py +182 -0
  62. arctrl/py/Core/Process/material.py +74 -0
  63. arctrl/py/Core/Process/material_attribute.py +95 -0
  64. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  65. arctrl/py/Core/Process/material_type.py +45 -0
  66. arctrl/py/Core/Process/process.py +477 -0
  67. arctrl/py/Core/Process/process_input.py +265 -0
  68. arctrl/py/Core/Process/process_output.py +235 -0
  69. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  70. arctrl/py/Core/Process/process_sequence.py +435 -0
  71. arctrl/py/Core/Process/protocol.py +175 -0
  72. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  73. arctrl/py/Core/Process/sample.py +82 -0
  74. arctrl/py/Core/Process/source.py +62 -0
  75. arctrl/py/Core/Table/__init__.py +0 -0
  76. arctrl/py/Core/Table/arc_table.py +1206 -0
  77. arctrl/py/Core/Table/arc_table_aux.py +1308 -0
  78. arctrl/py/Core/Table/arc_tables.py +574 -0
  79. arctrl/py/Core/Table/composite_cell.py +319 -0
  80. arctrl/py/Core/Table/composite_column.py +73 -0
  81. arctrl/py/Core/Table/composite_header.py +739 -0
  82. arctrl/py/Core/__init__.py +0 -0
  83. arctrl/py/Core/arc_types.py +5312 -0
  84. arctrl/py/Core/comment.py +128 -0
  85. arctrl/py/Core/comment_list.py +127 -0
  86. arctrl/py/Core/conversion.py +1375 -0
  87. arctrl/py/Core/data.py +247 -0
  88. arctrl/py/Core/data_context.py +157 -0
  89. arctrl/py/Core/data_file.py +112 -0
  90. arctrl/py/Core/datamap.py +217 -0
  91. arctrl/py/Core/identifier_setters.py +43 -0
  92. arctrl/py/Core/iproperty_value.py +36 -0
  93. arctrl/py/Core/ontology_annotation.py +298 -0
  94. arctrl/py/Core/ontology_source_reference.py +114 -0
  95. arctrl/py/Core/person.py +259 -0
  96. arctrl/py/Core/publication.py +161 -0
  97. arctrl/py/Core/template.py +231 -0
  98. arctrl/py/Core/templates.py +148 -0
  99. arctrl/py/Core/uri.py +11 -0
  100. arctrl/py/Core/value.py +188 -0
  101. arctrl/py/FileSystem/__init__.py +0 -0
  102. arctrl/py/FileSystem/commit.py +21 -0
  103. arctrl/py/FileSystem/default_gitattributes.py +1 -0
  104. arctrl/py/FileSystem/default_gitignore.py +1 -0
  105. arctrl/py/FileSystem/default_license.py +1 -0
  106. arctrl/py/FileSystem/file_system.py +58 -0
  107. arctrl/py/FileSystem/file_system_tree.py +483 -0
  108. arctrl/py/FileSystem/path.py +266 -0
  109. arctrl/py/Json/Datamap/__init__.py +0 -0
  110. arctrl/py/Json/Datamap/data_context.py +101 -0
  111. arctrl/py/Json/Datamap/datamap.py +53 -0
  112. arctrl/py/Json/Process/__init__.py +0 -0
  113. arctrl/py/Json/Process/assay_materials.py +46 -0
  114. arctrl/py/Json/Process/component.py +125 -0
  115. arctrl/py/Json/Process/factor.py +107 -0
  116. arctrl/py/Json/Process/factor_value.py +101 -0
  117. arctrl/py/Json/Process/material.py +226 -0
  118. arctrl/py/Json/Process/material_attribute.py +79 -0
  119. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  120. arctrl/py/Json/Process/material_type.py +53 -0
  121. arctrl/py/Json/Process/process.py +296 -0
  122. arctrl/py/Json/Process/process_input.py +83 -0
  123. arctrl/py/Json/Process/process_output.py +67 -0
  124. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  125. arctrl/py/Json/Process/protocol.py +354 -0
  126. arctrl/py/Json/Process/protocol_parameter.py +91 -0
  127. arctrl/py/Json/Process/sample.py +277 -0
  128. arctrl/py/Json/Process/source.py +214 -0
  129. arctrl/py/Json/Process/study_materials.py +52 -0
  130. arctrl/py/Json/Process/value.py +56 -0
  131. arctrl/py/Json/ROCrate/__init__.py +0 -0
  132. arctrl/py/Json/ROCrate/ldcontext.py +143 -0
  133. arctrl/py/Json/ROCrate/ldgraph.py +117 -0
  134. arctrl/py/Json/ROCrate/ldnode.py +304 -0
  135. arctrl/py/Json/ROCrate/ldref.py +44 -0
  136. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  137. arctrl/py/Json/Table/__init__.py +0 -0
  138. arctrl/py/Json/Table/arc_table.py +375 -0
  139. arctrl/py/Json/Table/cell_table.py +83 -0
  140. arctrl/py/Json/Table/composite_cell.py +136 -0
  141. arctrl/py/Json/Table/composite_header.py +67 -0
  142. arctrl/py/Json/Table/iotype.py +24 -0
  143. arctrl/py/Json/Table/oatable.py +82 -0
  144. arctrl/py/Json/Table/templates.py +281 -0
  145. arctrl/py/Json/__init__.py +0 -0
  146. arctrl/py/Json/assay.py +600 -0
  147. arctrl/py/Json/comment.py +206 -0
  148. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  149. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  150. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  151. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  152. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  153. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  154. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  155. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  156. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  157. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  158. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  159. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  160. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  161. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  162. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  163. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  164. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  165. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  166. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  167. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  168. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  169. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  170. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  171. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  172. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  173. arctrl/py/Json/converter_options.py +23 -0
  174. arctrl/py/Json/data.py +356 -0
  175. arctrl/py/Json/data_file.py +63 -0
  176. arctrl/py/Json/decode.py +271 -0
  177. arctrl/py/Json/encode.py +140 -0
  178. arctrl/py/Json/idtable.py +44 -0
  179. arctrl/py/Json/investigation.py +695 -0
  180. arctrl/py/Json/ontology_annotation.py +404 -0
  181. arctrl/py/Json/ontology_source_reference.py +255 -0
  182. arctrl/py/Json/person.py +658 -0
  183. arctrl/py/Json/property_value.py +359 -0
  184. arctrl/py/Json/publication.py +279 -0
  185. arctrl/py/Json/run.py +275 -0
  186. arctrl/py/Json/string_table.py +87 -0
  187. arctrl/py/Json/study.py +793 -0
  188. arctrl/py/Json/workflow.py +307 -0
  189. arctrl/py/JsonIO/Process/__init__.py +0 -0
  190. arctrl/py/JsonIO/Process/component.py +60 -0
  191. arctrl/py/JsonIO/Process/factor.py +36 -0
  192. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  193. arctrl/py/JsonIO/Process/material.py +60 -0
  194. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  195. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  196. arctrl/py/JsonIO/Process/material_type.py +36 -0
  197. arctrl/py/JsonIO/Process/process.py +60 -0
  198. arctrl/py/JsonIO/Process/process_input.py +38 -0
  199. arctrl/py/JsonIO/Process/process_output.py +60 -0
  200. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  201. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  202. arctrl/py/JsonIO/Process/protocol.py +60 -0
  203. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  204. arctrl/py/JsonIO/Process/sample.py +60 -0
  205. arctrl/py/JsonIO/Process/source.py +60 -0
  206. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  207. arctrl/py/JsonIO/Process/value.py +32 -0
  208. arctrl/py/JsonIO/Table/__init__.py +0 -0
  209. arctrl/py/JsonIO/Table/arc_table.py +103 -0
  210. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  211. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  212. arctrl/py/JsonIO/Table/compression.py +67 -0
  213. arctrl/py/JsonIO/Table/iotype.py +36 -0
  214. arctrl/py/JsonIO/Table/templates.py +113 -0
  215. arctrl/py/JsonIO/__init__.py +0 -0
  216. arctrl/py/JsonIO/assay.py +113 -0
  217. arctrl/py/JsonIO/comment.py +80 -0
  218. arctrl/py/JsonIO/data.py +60 -0
  219. arctrl/py/JsonIO/data_file.py +58 -0
  220. arctrl/py/JsonIO/datamap.py +36 -0
  221. arctrl/py/JsonIO/decode.py +9 -0
  222. arctrl/py/JsonIO/encode.py +1 -0
  223. arctrl/py/JsonIO/investigation.py +91 -0
  224. arctrl/py/JsonIO/ldobject.py +106 -0
  225. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  226. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  227. arctrl/py/JsonIO/person.py +82 -0
  228. arctrl/py/JsonIO/publication.py +82 -0
  229. arctrl/py/JsonIO/run.py +68 -0
  230. arctrl/py/JsonIO/study.py +114 -0
  231. arctrl/py/JsonIO/workflow.py +68 -0
  232. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  233. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  234. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  235. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  236. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  237. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  238. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  239. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  240. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  241. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  242. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  243. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  244. arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
  245. arctrl/py/ROCrate/LDTypes/comment.py +131 -0
  246. arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
  247. arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
  248. arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
  249. arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
  250. arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
  251. arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
  252. arctrl/py/ROCrate/LDTypes/file.py +281 -0
  253. arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
  254. arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
  255. arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
  256. arctrl/py/ROCrate/LDTypes/organization.py +83 -0
  257. arctrl/py/ROCrate/LDTypes/person.py +484 -0
  258. arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
  259. arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
  260. arctrl/py/ROCrate/LDTypes/sample.py +202 -0
  261. arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
  262. arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
  263. arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
  264. arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
  265. arctrl/py/ROCrate/__init__.py +0 -0
  266. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  267. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  268. arctrl/py/ROCrate/helper.py +8 -0
  269. arctrl/py/ROCrate/ldcontext.py +406 -0
  270. arctrl/py/ROCrate/ldobject.py +1247 -0
  271. arctrl/py/ROCrate/rocrate_context.py +51 -0
  272. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  273. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
  274. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  275. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
  276. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  277. arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
  278. arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
  279. arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
  280. arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
  281. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  282. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  283. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  284. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  285. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  286. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  287. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  288. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  289. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  290. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  291. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  292. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  293. arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
  294. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  295. arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
  296. arctrl/py/Spreadsheet/__init__.py +0 -0
  297. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  298. arctrl/py/Spreadsheet/arc_investigation.py +435 -0
  299. arctrl/py/Spreadsheet/arc_run.py +190 -0
  300. arctrl/py/Spreadsheet/arc_study.py +144 -0
  301. arctrl/py/Spreadsheet/arc_workflow.py +177 -0
  302. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  303. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  304. arctrl/py/Spreadsheet/datamap.py +43 -0
  305. arctrl/py/Spreadsheet/template.py +460 -0
  306. arctrl/py/ValidationPackages/__init__.py +0 -0
  307. arctrl/py/ValidationPackages/validation_package.py +82 -0
  308. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  309. arctrl/py/WebRequest/__init__.py +0 -0
  310. arctrl/py/WebRequest/web_request.py +9 -0
  311. arctrl/py/WebRequest/web_request_py.py +135 -0
  312. arctrl/py/WorkflowGraph/__init__.py +0 -0
  313. arctrl/py/WorkflowGraph/adapters.py +141 -0
  314. arctrl/py/WorkflowGraph/build_options.py +45 -0
  315. arctrl/py/WorkflowGraph/builder.py +720 -0
  316. arctrl/py/WorkflowGraph/graph_types.py +260 -0
  317. arctrl/py/WorkflowGraph/query_helpers.py +76 -0
  318. arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
  319. arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
  320. arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
  321. arctrl/py/Yaml/__init__.py +0 -0
  322. arctrl/py/Yaml/decode.py +1 -0
  323. arctrl/py/Yaml/encode.py +10 -0
  324. arctrl/py/Yaml/validation_package.py +77 -0
  325. arctrl/py/Yaml/validation_packages_config.py +86 -0
  326. arctrl/py/__init__.py +0 -0
  327. arctrl/py/arc.py +1891 -0
  328. arctrl/py/column_index.py +280 -0
  329. arctrl/py/conversion.py +142 -0
  330. arctrl/py/cross_async.py +76 -0
  331. arctrl/py/cwlrun_resolver.py +228 -0
  332. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  333. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  334. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  335. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  336. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  337. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  338. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  339. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  340. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  341. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  342. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  343. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  344. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  345. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  346. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  347. arctrl/py/fable_modules/fable_library/char.py +237 -0
  348. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  349. arctrl/py/fable_modules/fable_library/date.py +779 -0
  350. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  351. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  352. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  353. arctrl/py/fable_modules/fable_library/double.py +87 -0
  354. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  355. arctrl/py/fable_modules/fable_library/event.py +206 -0
  356. arctrl/py/fable_modules/fable_library/file.py +107 -0
  357. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  358. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  359. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  360. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  361. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  362. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  363. arctrl/py/fable_modules/fable_library/long.py +240 -0
  364. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  365. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  366. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  367. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  368. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  369. arctrl/py/fable_modules/fable_library/native.py +45 -0
  370. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  371. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  372. arctrl/py/fable_modules/fable_library/option.py +128 -0
  373. arctrl/py/fable_modules/fable_library/path.py +62 -0
  374. arctrl/py/fable_modules/fable_library/range.py +117 -0
  375. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  376. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  377. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  378. arctrl/py/fable_modules/fable_library/result.py +212 -0
  379. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  380. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  381. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  382. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  383. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  384. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  385. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  386. arctrl/py/fable_modules/fable_library/task.py +116 -0
  387. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  388. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  389. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  390. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  391. arctrl/py/fable_modules/fable_library/types.py +401 -0
  392. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  393. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  394. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  395. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  396. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  397. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  398. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  399. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  400. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  401. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  402. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  403. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  404. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  405. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  406. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  407. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  408. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  409. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  410. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  411. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  412. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  413. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  414. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  415. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  416. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  417. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  418. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  419. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  420. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  421. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
  422. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
  423. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  424. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  425. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  426. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  427. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  428. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  429. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  430. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  431. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  432. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
  433. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  434. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  435. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  436. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  437. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  438. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  439. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
  440. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  441. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  442. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
  443. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  444. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
  445. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
  446. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
  447. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
  448. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  449. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  450. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
  451. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
  452. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  453. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  454. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
  455. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  456. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  457. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
  458. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
  459. arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
  460. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
  461. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  462. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
  463. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  464. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  465. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  466. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
  467. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
  468. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
  469. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  470. arctrl/py/fable_modules/siren/__init__.py +0 -0
  471. arctrl/py/fable_modules/siren/config.py +1038 -0
  472. arctrl/py/fable_modules/siren/formatting.py +1121 -0
  473. arctrl/py/fable_modules/siren/siren.py +1941 -0
  474. arctrl/py/fable_modules/siren/siren_types.py +1229 -0
  475. arctrl/py/fable_modules/siren/theme_variables.py +517 -0
  476. arctrl/py/fable_modules/siren/util.py +37 -0
  477. arctrl/py/fable_modules/siren/yaml.py +101 -0
  478. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  479. arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
  480. arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
  481. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  482. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  483. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  484. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  485. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  486. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  487. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  488. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  489. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  490. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  491. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  492. arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
  493. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  494. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  495. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  496. arctrl/py/fable_modules/yamlicious/reader.py +739 -0
  497. arctrl/py/fable_modules/yamlicious/regex.py +29 -0
  498. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
  499. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  500. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  501. arctrl/py/json.py +389 -0
  502. arctrl/py/license.py +169 -0
  503. arctrl/py/rocrate_io.py +242 -0
  504. arctrl/py/template_web.py +23 -0
  505. arctrl/py/xlsx.py +212 -0
  506. arctrl/py/yaml.py +79 -0
  507. arctrl/rocrate.py +21 -0
  508. arctrl-3.0.0.dist-info/METADATA +157 -0
  509. arctrl-3.0.0.dist-info/RECORD +511 -0
  510. arctrl-3.0.0.dist-info/WHEEL +4 -0
  511. arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
arctrl/py/json.py ADDED
@@ -0,0 +1,389 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from .Core.arc_types import (ArcAssay, ArcStudy, ArcWorkflow, ArcRun, ArcInvestigation)
4
+ from .Core.datamap import Datamap
5
+ from .Core.ontology_annotation import OntologyAnnotation
6
+ from .Core.person import Person
7
+ from .ROCrate.ldobject import (LDNode, LDGraph)
8
+ from .arc import ARC
9
+ from .JsonIO.assay import (ARCtrl_ArcAssay__ArcAssay_fromJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_toJsonString_Static_71136F3F, ARCtrl_ArcAssay__ArcAssay_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcAssay__ArcAssay_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcAssay__ArcAssay_toROCrateJsonString_Static_5CABCA47)
10
+ from .JsonIO.datamap import (ARCtrl_Datamap__Datamap_fromJsonString_Static_Z721C83C5, ARCtrl_Datamap__Datamap_toJsonString_Static_71136F3F)
11
+ from .JsonIO.investigation import (ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA)
12
+ from .JsonIO.ldobject import (ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F, ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F)
13
+ from .JsonIO.ontology_annotation import (ARCtrl_OntologyAnnotation__OntologyAnnotation_fromJsonString_Static_Z721C83C5, ARCtrl_OntologyAnnotation__OntologyAnnotation_fromISAJsonString_Static_Z721C83C5, ARCtrl_OntologyAnnotation__OntologyAnnotation_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_OntologyAnnotation__OntologyAnnotation_toJsonString_Static_71136F3F, ARCtrl_OntologyAnnotation__OntologyAnnotation_toISAJsonString_Static_71136F3F, ARCtrl_OntologyAnnotation__OntologyAnnotation_toROCrateJsonString_Static_71136F3F)
14
+ from .JsonIO.person import (ARCtrl_Person__Person_fromJsonString_Static_Z721C83C5, ARCtrl_Person__Person_fromISAJsonString_Static_Z721C83C5, ARCtrl_Person__Person_toJsonString_Static_71136F3F, ARCtrl_Person__Person_toISAJsonString_Static_Z3B036AA, ARCtrl_Person__Person_toROCrateJsonString_Static_71136F3F)
15
+ from .JsonIO.run import (ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F, ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F)
16
+ from .JsonIO.study import (ARCtrl_ArcStudy__ArcStudy_fromJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_toJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toISAJsonString_Static_Z3FD920F1, ARCtrl_ArcStudy__ArcStudy_toROCrateJsonString_Static_3BA23086)
17
+ from .JsonIO.workflow import (ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F, ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F)
18
+ from .fable_modules.fable_library.list import FSharpList
19
+ from .fable_modules.fable_library.reflection import (TypeInfo, class_type)
20
+
21
+ def _expr4513() -> TypeInfo:
22
+ return class_type("ARCtrl.JsonHelper.OntologyAnnotationJson", None, JsonHelper_OntologyAnnotationJson)
23
+
24
+
25
+ class JsonHelper_OntologyAnnotationJson:
26
+ def __init__(self, __unit: None=None) -> None:
27
+ pass
28
+
29
+ def from_json_string(self, s: str) -> OntologyAnnotation:
30
+ return ARCtrl_OntologyAnnotation__OntologyAnnotation_fromJsonString_Static_Z721C83C5(s)
31
+
32
+ def from_isajson_string(self, s: str) -> OntologyAnnotation:
33
+ return ARCtrl_OntologyAnnotation__OntologyAnnotation_fromISAJsonString_Static_Z721C83C5(s)
34
+
35
+ def from_rocrate_json_string(self, s: str) -> OntologyAnnotation:
36
+ return ARCtrl_OntologyAnnotation__OntologyAnnotation_fromROCrateJsonString_Static_Z721C83C5(s)
37
+
38
+ def to_json_string(self, oa: OntologyAnnotation, spaces: int | None=None) -> str:
39
+ return ARCtrl_OntologyAnnotation__OntologyAnnotation_toJsonString_Static_71136F3F(spaces)(oa)
40
+
41
+ def to_isajson_string(self, oa: OntologyAnnotation, spaces: int | None=None) -> str:
42
+ return ARCtrl_OntologyAnnotation__OntologyAnnotation_toISAJsonString_Static_71136F3F(spaces)(oa)
43
+
44
+ def to_rocrate_json_string(self, oa: OntologyAnnotation, spaces: int | None=None) -> str:
45
+ return ARCtrl_OntologyAnnotation__OntologyAnnotation_toROCrateJsonString_Static_71136F3F(spaces)(oa)
46
+
47
+
48
+ JsonHelper_OntologyAnnotationJson_reflection = _expr4513
49
+
50
+ def JsonHelper_OntologyAnnotationJson__ctor(__unit: None=None) -> JsonHelper_OntologyAnnotationJson:
51
+ return JsonHelper_OntologyAnnotationJson(__unit)
52
+
53
+
54
+ def _expr4514() -> TypeInfo:
55
+ return class_type("ARCtrl.JsonHelper.PersonJson", None, JsonHelper_PersonJson)
56
+
57
+
58
+ class JsonHelper_PersonJson:
59
+ def __init__(self, __unit: None=None) -> None:
60
+ pass
61
+
62
+ def from_json_string(self, s: str) -> Person:
63
+ return ARCtrl_Person__Person_fromJsonString_Static_Z721C83C5(s)
64
+
65
+ def from_isajson_string(self, s: str) -> Person:
66
+ return ARCtrl_Person__Person_fromISAJsonString_Static_Z721C83C5(s)
67
+
68
+ def from_rocrate_json_string(self, s: str) -> LDNode:
69
+ return ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5(s)
70
+
71
+ def to_json_string(self, person: Person, spaces: int | None=None) -> str:
72
+ return ARCtrl_Person__Person_toJsonString_Static_71136F3F(spaces)(person)
73
+
74
+ def to_isajson_string(self, person: Person, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
75
+ return ARCtrl_Person__Person_toISAJsonString_Static_Z3B036AA(spaces, use_idreferencing)(person)
76
+
77
+ def to_rocrate_json_string(self, person: Person, spaces: int | None=None) -> str:
78
+ return ARCtrl_Person__Person_toROCrateJsonString_Static_71136F3F(spaces)(person)
79
+
80
+
81
+ JsonHelper_PersonJson_reflection = _expr4514
82
+
83
+ def JsonHelper_PersonJson__ctor(__unit: None=None) -> JsonHelper_PersonJson:
84
+ return JsonHelper_PersonJson(__unit)
85
+
86
+
87
+ def _expr4515() -> TypeInfo:
88
+ return class_type("ARCtrl.JsonHelper.DatamapJson", None, JsonHelper_DatamapJson)
89
+
90
+
91
+ class JsonHelper_DatamapJson:
92
+ def __init__(self, __unit: None=None) -> None:
93
+ pass
94
+
95
+ def from_json_string(self, s: str) -> Datamap:
96
+ return ARCtrl_Datamap__Datamap_fromJsonString_Static_Z721C83C5(s)
97
+
98
+ def to_json_string(self, datamap: Datamap, spaces: int | None=None) -> str:
99
+ return ARCtrl_Datamap__Datamap_toJsonString_Static_71136F3F(spaces)(datamap)
100
+
101
+
102
+ JsonHelper_DatamapJson_reflection = _expr4515
103
+
104
+ def JsonHelper_DatamapJson__ctor(__unit: None=None) -> JsonHelper_DatamapJson:
105
+ return JsonHelper_DatamapJson(__unit)
106
+
107
+
108
+ def _expr4519() -> TypeInfo:
109
+ return class_type("ARCtrl.JsonHelper.AssayJson", None, JsonHelper_AssayJson)
110
+
111
+
112
+ class JsonHelper_AssayJson:
113
+ def __init__(self, __unit: None=None) -> None:
114
+ pass
115
+
116
+ def from_json_string(self, s: str) -> ArcAssay:
117
+ return ARCtrl_ArcAssay__ArcAssay_fromJsonString_Static_Z721C83C5(s)
118
+
119
+ def from_compressed_json_string(self, s: str) -> ArcAssay:
120
+ return ARCtrl_ArcAssay__ArcAssay_fromCompressedJsonString_Static_Z721C83C5(s)
121
+
122
+ def from_isajson_string(self, s: str) -> ArcAssay:
123
+ return ARCtrl_ArcAssay__ArcAssay_fromISAJsonString_Static_Z721C83C5(s)
124
+
125
+ def from_rocrate_json_string(self, s: str) -> ArcAssay:
126
+ return ARCtrl_ArcAssay__ArcAssay_fromROCrateJsonString_Static_Z721C83C5(s)
127
+
128
+ def to_json_string(self, assay: ArcAssay, spaces: int | None=None) -> str:
129
+ return ARCtrl_ArcAssay__ArcAssay_toJsonString_Static_71136F3F(spaces)(assay)
130
+
131
+ def to_compressed_json_string(self, assay: ArcAssay, spaces: int | None=None) -> str:
132
+ return ARCtrl_ArcAssay__ArcAssay_toCompressedJsonString_Static_71136F3F(spaces)(assay)
133
+
134
+ def to_isajson_string(self, assay: ArcAssay, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
135
+ return ARCtrl_ArcAssay__ArcAssay_toISAJsonString_Static_Z3B036AA(spaces, use_idreferencing)(assay)
136
+
137
+ def to_rocrate_json_string(self, assay: ArcAssay, study_name: str, spaces: int | None=None) -> str:
138
+ return ARCtrl_ArcAssay__ArcAssay_toROCrateJsonString_Static_5CABCA47(study_name, spaces)(assay)
139
+
140
+
141
+ JsonHelper_AssayJson_reflection = _expr4519
142
+
143
+ def JsonHelper_AssayJson__ctor(__unit: None=None) -> JsonHelper_AssayJson:
144
+ return JsonHelper_AssayJson(__unit)
145
+
146
+
147
+ def _expr4521() -> TypeInfo:
148
+ return class_type("ARCtrl.JsonHelper.StudyJson", None, JsonHelper_StudyJson)
149
+
150
+
151
+ class JsonHelper_StudyJson:
152
+ def __init__(self, __unit: None=None) -> None:
153
+ pass
154
+
155
+ def from_json_string(self, s: str) -> ArcStudy:
156
+ return ARCtrl_ArcStudy__ArcStudy_fromJsonString_Static_Z721C83C5(s)
157
+
158
+ def from_compressed_json_string(self, s: str) -> ArcStudy:
159
+ return ARCtrl_ArcStudy__ArcStudy_fromCompressedJsonString_Static_Z721C83C5(s)
160
+
161
+ def from_isajson_string(self, s: str) -> tuple[ArcStudy, FSharpList[ArcAssay]]:
162
+ return ARCtrl_ArcStudy__ArcStudy_fromISAJsonString_Static_Z721C83C5(s)
163
+
164
+ def from_rocrate_json_string(self, s: str) -> tuple[ArcStudy, FSharpList[ArcAssay]]:
165
+ return ARCtrl_ArcStudy__ArcStudy_fromROCrateJsonString_Static_Z721C83C5(s)
166
+
167
+ def to_json_string(self, study: ArcStudy, spaces: int | None=None) -> str:
168
+ return ARCtrl_ArcStudy__ArcStudy_toJsonString_Static_71136F3F(spaces)(study)
169
+
170
+ def to_compressed_json_string(self, study: ArcStudy, spaces: int | None=None) -> str:
171
+ return ARCtrl_ArcStudy__ArcStudy_toCompressedJsonString_Static_71136F3F(spaces)(study)
172
+
173
+ def to_isajson_string(self, study: ArcStudy, assays: FSharpList[ArcAssay] | None=None, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
174
+ return ARCtrl_ArcStudy__ArcStudy_toISAJsonString_Static_Z3FD920F1(assays, spaces, use_idreferencing)(study)
175
+
176
+ def to_rocrate_json_string(self, study: ArcStudy, assays: FSharpList[ArcAssay] | None=None, spaces: int | None=None) -> str:
177
+ return ARCtrl_ArcStudy__ArcStudy_toROCrateJsonString_Static_3BA23086(assays, spaces)(study)
178
+
179
+
180
+ JsonHelper_StudyJson_reflection = _expr4521
181
+
182
+ def JsonHelper_StudyJson__ctor(__unit: None=None) -> JsonHelper_StudyJson:
183
+ return JsonHelper_StudyJson(__unit)
184
+
185
+
186
+ def _expr4522() -> TypeInfo:
187
+ return class_type("ARCtrl.JsonHelper.WorkflowJson", None, JsonHelper_WorkflowJson)
188
+
189
+
190
+ class JsonHelper_WorkflowJson:
191
+ def __init__(self, __unit: None=None) -> None:
192
+ pass
193
+
194
+ def from_json_string(self, s: str) -> ArcWorkflow:
195
+ return ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5(s)
196
+
197
+ def from_compressed_json_string(self, s: str) -> ArcWorkflow:
198
+ return ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5(s)
199
+
200
+ def to_json_string(self, workflow: ArcWorkflow, spaces: int | None=None) -> str:
201
+ return ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F(spaces)(workflow)
202
+
203
+ def to_compressed_json_string(self, workflow: ArcWorkflow, spaces: int | None=None) -> str:
204
+ return ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F(spaces)(workflow)
205
+
206
+
207
+ JsonHelper_WorkflowJson_reflection = _expr4522
208
+
209
+ def JsonHelper_WorkflowJson__ctor(__unit: None=None) -> JsonHelper_WorkflowJson:
210
+ return JsonHelper_WorkflowJson(__unit)
211
+
212
+
213
+ def _expr4523() -> TypeInfo:
214
+ return class_type("ARCtrl.JsonHelper.RunJson", None, JsonHelper_RunJson)
215
+
216
+
217
+ class JsonHelper_RunJson:
218
+ def __init__(self, __unit: None=None) -> None:
219
+ pass
220
+
221
+ def from_json_string(self, s: str) -> ArcRun:
222
+ return ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5(s)
223
+
224
+ def from_compressed_json_string(self, s: str) -> ArcRun:
225
+ return ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5(s)
226
+
227
+ def to_json_string(self, run: ArcRun, spaces: int | None=None) -> str:
228
+ return ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F(spaces)(run)
229
+
230
+ def to_compressed_json_string(self, run: ArcRun, spaces: int | None=None) -> str:
231
+ return ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F(spaces)(run)
232
+
233
+
234
+ JsonHelper_RunJson_reflection = _expr4523
235
+
236
+ def JsonHelper_RunJson__ctor(__unit: None=None) -> JsonHelper_RunJson:
237
+ return JsonHelper_RunJson(__unit)
238
+
239
+
240
+ def _expr4524() -> TypeInfo:
241
+ return class_type("ARCtrl.JsonHelper.InvestigationJson", None, JsonHelper_InvestigationJson)
242
+
243
+
244
+ class JsonHelper_InvestigationJson:
245
+ def __init__(self, __unit: None=None) -> None:
246
+ pass
247
+
248
+ def from_json_string(self, s: str) -> ArcInvestigation:
249
+ return ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5(s)
250
+
251
+ def from_compressed_json_string(self, s: str) -> ArcInvestigation:
252
+ return ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5(s)
253
+
254
+ def from_isajson_string(self, s: str) -> ArcInvestigation:
255
+ return ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5(s)
256
+
257
+ def to_json_string(self, investigation: ArcInvestigation, spaces: int | None=None) -> str:
258
+ return ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F(spaces)(investigation)
259
+
260
+ def to_compressed_json_string(self, investigation: ArcInvestigation, spaces: int | None=None) -> str:
261
+ return ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F(spaces)(investigation)
262
+
263
+ def to_isajson_string(self, investigation: ArcInvestigation, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
264
+ return ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA(spaces, use_idreferencing)(investigation)
265
+
266
+
267
+ JsonHelper_InvestigationJson_reflection = _expr4524
268
+
269
+ def JsonHelper_InvestigationJson__ctor(__unit: None=None) -> JsonHelper_InvestigationJson:
270
+ return JsonHelper_InvestigationJson(__unit)
271
+
272
+
273
+ def _expr4525() -> TypeInfo:
274
+ return class_type("ARCtrl.JsonHelper.ARCJson", None, JsonHelper_ARCJson)
275
+
276
+
277
+ class JsonHelper_ARCJson:
278
+ def __init__(self, __unit: None=None) -> None:
279
+ pass
280
+
281
+ def from_rocrate_json_string(self, s: str) -> ARC:
282
+ return ARC.from_rocrate_json_string(s)
283
+
284
+ def to_rocrate_json_string(self, spaces: int | None=None) -> Callable[[ARC], str]:
285
+ return ARC.to_rocrate_json_string(spaces)
286
+
287
+
288
+ JsonHelper_ARCJson_reflection = _expr4525
289
+
290
+ def JsonHelper_ARCJson__ctor(__unit: None=None) -> JsonHelper_ARCJson:
291
+ return JsonHelper_ARCJson(__unit)
292
+
293
+
294
+ def _expr4526() -> TypeInfo:
295
+ return class_type("ARCtrl.JsonHelper.LDGraphJson", None, JsonHelper_LDGraphJson)
296
+
297
+
298
+ class JsonHelper_LDGraphJson:
299
+ def __init__(self, __unit: None=None) -> None:
300
+ pass
301
+
302
+ def from_rocrate_json_string(self, s: str) -> LDGraph:
303
+ return ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5(s)
304
+
305
+ def to_rocrate_json_string(self, spaces: int | None=None) -> Callable[[LDGraph], str]:
306
+ return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(spaces)
307
+
308
+
309
+ JsonHelper_LDGraphJson_reflection = _expr4526
310
+
311
+ def JsonHelper_LDGraphJson__ctor(__unit: None=None) -> JsonHelper_LDGraphJson:
312
+ return JsonHelper_LDGraphJson(__unit)
313
+
314
+
315
+ def _expr4527() -> TypeInfo:
316
+ return class_type("ARCtrl.JsonHelper.LDNodeJson", None, JsonHelper_LDNodeJson)
317
+
318
+
319
+ class JsonHelper_LDNodeJson:
320
+ def __init__(self, __unit: None=None) -> None:
321
+ pass
322
+
323
+ def from_rocrate_json_string(self, s: str) -> LDNode:
324
+ return ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5(s)
325
+
326
+ def to_rocrate_json_string(self, spaces: int | None=None) -> Callable[[LDNode], str]:
327
+ return ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(spaces)
328
+
329
+
330
+ JsonHelper_LDNodeJson_reflection = _expr4527
331
+
332
+ def JsonHelper_LDNodeJson__ctor(__unit: None=None) -> JsonHelper_LDNodeJson:
333
+ return JsonHelper_LDNodeJson(__unit)
334
+
335
+
336
+ def _expr4528() -> TypeInfo:
337
+ return class_type("ARCtrl.JsonController", None, JsonController)
338
+
339
+
340
+ class JsonController:
341
+ @staticmethod
342
+ def OntologyAnnotation() -> JsonHelper_OntologyAnnotationJson:
343
+ return JsonHelper_OntologyAnnotationJson()
344
+
345
+ @staticmethod
346
+ def Person() -> JsonHelper_PersonJson:
347
+ return JsonHelper_PersonJson()
348
+
349
+ @staticmethod
350
+ def Datamap() -> JsonHelper_DatamapJson:
351
+ return JsonHelper_DatamapJson()
352
+
353
+ @staticmethod
354
+ def Assay() -> JsonHelper_AssayJson:
355
+ return JsonHelper_AssayJson()
356
+
357
+ @staticmethod
358
+ def Study() -> JsonHelper_StudyJson:
359
+ return JsonHelper_StudyJson()
360
+
361
+ @staticmethod
362
+ def Workflow() -> JsonHelper_WorkflowJson:
363
+ return JsonHelper_WorkflowJson()
364
+
365
+ @staticmethod
366
+ def Run() -> JsonHelper_RunJson:
367
+ return JsonHelper_RunJson()
368
+
369
+ @staticmethod
370
+ def Investigation() -> JsonHelper_InvestigationJson:
371
+ return JsonHelper_InvestigationJson()
372
+
373
+ @staticmethod
374
+ def ARC() -> JsonHelper_ARCJson:
375
+ return JsonHelper_ARCJson()
376
+
377
+ @staticmethod
378
+ def LDGraph() -> JsonHelper_LDGraphJson:
379
+ return JsonHelper_LDGraphJson()
380
+
381
+ @staticmethod
382
+ def LDNode() -> JsonHelper_LDNodeJson:
383
+ return JsonHelper_LDNodeJson()
384
+
385
+
386
+ JsonController_reflection = _expr4528
387
+
388
+ __all__ = ["JsonHelper_OntologyAnnotationJson_reflection", "JsonHelper_PersonJson_reflection", "JsonHelper_DatamapJson_reflection", "JsonHelper_AssayJson_reflection", "JsonHelper_StudyJson_reflection", "JsonHelper_WorkflowJson_reflection", "JsonHelper_RunJson_reflection", "JsonHelper_InvestigationJson_reflection", "JsonHelper_ARCJson_reflection", "JsonHelper_LDGraphJson_reflection", "JsonHelper_LDNodeJson_reflection", "JsonController_reflection"]
389
+
arctrl/py/license.py ADDED
@@ -0,0 +1,169 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from .Contract.contract import (Contract, DTOType, DTO)
5
+ from .Core.Helper.hash_codes import box_hash_array
6
+ from .FileSystem.path import alternative_licensefile_names
7
+ from .fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from .fable_modules.fable_library.seq import (contains, for_all)
9
+ from .fable_modules.fable_library.types import Array
10
+ from .fable_modules.fable_library.util import (string_hash, to_enumerable)
11
+
12
+ def _expr4184() -> TypeInfo:
13
+ return class_type("ARCtrl.License", None, License)
14
+
15
+
16
+ class License:
17
+ def __init__(self, content_type: str, content: str, path: str | None=None) -> None:
18
+ self._type: str = content_type
19
+ self._content: str = content
20
+ self._staticHash: int = 0
21
+ self._path: str = "LICENSE" if (path is None) else path
22
+
23
+ @property
24
+ def Type(self, __unit: None=None) -> str:
25
+ this: License = self
26
+ return this._type
27
+
28
+ @Type.setter
29
+ def Type(self, h: str) -> None:
30
+ this: License = self
31
+ this._type = h
32
+
33
+ @property
34
+ def Content(self, __unit: None=None) -> str:
35
+ this: License = self
36
+ return this._content
37
+
38
+ @Content.setter
39
+ def Content(self, h: str) -> None:
40
+ this: License = self
41
+ this._content = h
42
+
43
+ @property
44
+ def StaticHash(self, __unit: None=None) -> int:
45
+ this: License = self
46
+ return this._staticHash
47
+
48
+ @StaticHash.setter
49
+ def StaticHash(self, h: int) -> None:
50
+ this: License = self
51
+ this._staticHash = h or 0
52
+
53
+ @property
54
+ def Path(self, __unit: None=None) -> str:
55
+ this: License = self
56
+ return this._path
57
+
58
+ @Path.setter
59
+ def Path(self, p: str) -> None:
60
+ this: License = self
61
+ this._path = p
62
+
63
+ @staticmethod
64
+ def init_fulltext(content: str, path: str | None=None) -> License:
65
+ return License("fulltext", content, path)
66
+
67
+ def ToCreateContract(self, __unit: None=None) -> Contract:
68
+ this: License = self
69
+ match_value: str = this.Type
70
+ return Contract.create_create(this._path, DTOType(10), DTO(1, this.Content))
71
+
72
+ def ToUpdateContract(self, __unit: None=None) -> Contract:
73
+ this: License = self
74
+ match_value: str = this.Type
75
+ return Contract.create_update(this._path, DTOType(10), DTO(1, this.Content))
76
+
77
+ def ToDeleteContract(self, __unit: None=None) -> Contract:
78
+ this: License = self
79
+ return Contract.create_delete(this._path)
80
+
81
+ def GetRenameContracts(self, new_path: str) -> Array[Contract]:
82
+ this: License = self
83
+ delete_contract: Contract = this.ToDeleteContract()
84
+ this.Path = new_path
85
+ def _arrow4178(__unit: None=None) -> Contract:
86
+ match_value: str = this.Type
87
+ return Contract.create_create(new_path, DTOType(10), DTO(1, this.Content))
88
+
89
+ return [delete_contract, _arrow4178()]
90
+
91
+ @staticmethod
92
+ def to_delete_contract(license: License) -> Contract:
93
+ return license.ToDeleteContract()
94
+
95
+ @staticmethod
96
+ def to_create_contract(license: License) -> Contract:
97
+ return license.ToCreateContract()
98
+
99
+ @staticmethod
100
+ def to_update_contract(license: License) -> Contract:
101
+ return license.ToUpdateContract()
102
+
103
+ @staticmethod
104
+ def get_rename_contracts(new_path: str) -> Callable[[License], Array[Contract]]:
105
+ def _arrow4179(license: License) -> Array[Contract]:
106
+ return license.GetRenameContracts(new_path)
107
+
108
+ return _arrow4179
109
+
110
+ @staticmethod
111
+ def try_from_read_contract(c: Contract) -> License | None:
112
+ def _arrow4182(__unit: None=None) -> bool:
113
+ txt: str = c.DTO.fields[0]
114
+ class ObjectExpr4181:
115
+ @property
116
+ def Equals(self) -> Callable[[str, str], bool]:
117
+ def _arrow4180(x: str, y: str) -> bool:
118
+ return x == y
119
+
120
+ return _arrow4180
121
+
122
+ @property
123
+ def GetHashCode(self) -> Callable[[str], int]:
124
+ return string_hash
125
+
126
+ return True if (c.Path == "LICENSE") else contains(c.Path, alternative_licensefile_names, ObjectExpr4181())
127
+
128
+ def _arrow4183(__unit: None=None) -> License | None:
129
+ txt_1: str = c.DTO.fields[0]
130
+ return License.init_fulltext(txt_1, c.Path)
131
+
132
+ return (((((_arrow4183() if _arrow4182() else None) if (c.DTO.tag == 1) else None) if (c.DTO is not None) else None) if (c.DTOType.tag == 10) else None) if (c.DTOType is not None) else None) if (c.Operation == "READ") else None
133
+
134
+ @staticmethod
135
+ def GetDefaultLicense(__unit: None=None) -> License:
136
+ return License.init_fulltext("ALL RIGHTS RESERVED BY THE AUTHORS")
137
+
138
+ def Copy(self, __unit: None=None) -> License:
139
+ this: License = self
140
+ return License(this.Type, this.Content)
141
+
142
+ def __eq__(self, other: Any=None) -> bool:
143
+ this: License = self
144
+ return this.StructurallyEquals(other) if isinstance(other, License) else False
145
+
146
+ def __hash__(self, __unit: None=None) -> Any:
147
+ this: License = self
148
+ return box_hash_array([this.Type, this.Content, this.Path])
149
+
150
+ def StructurallyEquals(self, other: License) -> bool:
151
+ this: License = self
152
+ def predicate(x: bool) -> bool:
153
+ return x == True
154
+
155
+ return for_all(predicate, to_enumerable([this.Type == other.Type, this.Content == other.Content, this.Path == other.Path]))
156
+
157
+ def ReferenceEquals(self, other: License) -> bool:
158
+ this: License = self
159
+ return this is other
160
+
161
+
162
+ License_reflection = _expr4184
163
+
164
+ def License__ctor_Z2FC25A28(content_type: str, content: str, path: str | None=None) -> License:
165
+ return License(content_type, content, path)
166
+
167
+
168
+ __all__ = ["License_reflection"]
169
+