arctrl 3.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (511) hide show
  1. arctrl/__init__.py +23 -0
  2. arctrl/cwl.py +12 -0
  3. arctrl/py/CWL/__init__.py +0 -0
  4. arctrl/py/CWL/cwlprocessing_unit.py +221 -0
  5. arctrl/py/CWL/cwltypes.py +364 -0
  6. arctrl/py/CWL/decode.py +3532 -0
  7. arctrl/py/CWL/encode.py +1905 -0
  8. arctrl/py/CWL/expression_tool_description.py +192 -0
  9. arctrl/py/CWL/hash_helpers.py +60 -0
  10. arctrl/py/CWL/inputs.py +122 -0
  11. arctrl/py/CWL/operation_description.py +169 -0
  12. arctrl/py/CWL/outputs.py +171 -0
  13. arctrl/py/CWL/parameter_reference.py +74 -0
  14. arctrl/py/CWL/requirements.py +350 -0
  15. arctrl/py/CWL/tool_description.py +192 -0
  16. arctrl/py/CWL/workflow_description.py +181 -0
  17. arctrl/py/CWL/workflow_steps.py +354 -0
  18. arctrl/py/Contract/__init__.py +0 -0
  19. arctrl/py/Contract/arc.py +89 -0
  20. arctrl/py/Contract/arc_assay.py +125 -0
  21. arctrl/py/Contract/arc_investigation.py +88 -0
  22. arctrl/py/Contract/arc_run.py +291 -0
  23. arctrl/py/Contract/arc_study.py +126 -0
  24. arctrl/py/Contract/arc_workflow.py +213 -0
  25. arctrl/py/Contract/contract.py +153 -0
  26. arctrl/py/Contract/datamap.py +396 -0
  27. arctrl/py/Contract/git.py +116 -0
  28. arctrl/py/Contract/license.py +58 -0
  29. arctrl/py/Contract/validation_packages_config.py +107 -0
  30. arctrl/py/ContractIO/__init__.py +0 -0
  31. arctrl/py/ContractIO/contract_io.py +350 -0
  32. arctrl/py/ContractIO/file_system_helper.py +264 -0
  33. arctrl/py/Conversion/__init__.py +0 -0
  34. arctrl/py/Conversion/assay.py +151 -0
  35. arctrl/py/Conversion/basic.py +559 -0
  36. arctrl/py/Conversion/column_index.py +91 -0
  37. arctrl/py/Conversion/datamap.py +36 -0
  38. arctrl/py/Conversion/date_time.py +32 -0
  39. arctrl/py/Conversion/investigation.py +171 -0
  40. arctrl/py/Conversion/person.py +148 -0
  41. arctrl/py/Conversion/process.py +828 -0
  42. arctrl/py/Conversion/run.py +367 -0
  43. arctrl/py/Conversion/scholarly_article.py +163 -0
  44. arctrl/py/Conversion/study.py +99 -0
  45. arctrl/py/Conversion/table.py +229 -0
  46. arctrl/py/Conversion/workflow.py +680 -0
  47. arctrl/py/Core/Helper/__init__.py +0 -0
  48. arctrl/py/Core/Helper/collections_.py +512 -0
  49. arctrl/py/Core/Helper/date_time.py +26 -0
  50. arctrl/py/Core/Helper/hash_codes.py +60 -0
  51. arctrl/py/Core/Helper/identifier.py +290 -0
  52. arctrl/py/Core/Helper/orcid.py +42 -0
  53. arctrl/py/Core/Helper/printer.py +13 -0
  54. arctrl/py/Core/Helper/regex.py +554 -0
  55. arctrl/py/Core/Helper/sem_ver.py +71 -0
  56. arctrl/py/Core/Helper/url.py +148 -0
  57. arctrl/py/Core/Process/__init__.py +0 -0
  58. arctrl/py/Core/Process/column_index.py +280 -0
  59. arctrl/py/Core/Process/component.py +200 -0
  60. arctrl/py/Core/Process/factor.py +151 -0
  61. arctrl/py/Core/Process/factor_value.py +182 -0
  62. arctrl/py/Core/Process/material.py +74 -0
  63. arctrl/py/Core/Process/material_attribute.py +95 -0
  64. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  65. arctrl/py/Core/Process/material_type.py +45 -0
  66. arctrl/py/Core/Process/process.py +477 -0
  67. arctrl/py/Core/Process/process_input.py +265 -0
  68. arctrl/py/Core/Process/process_output.py +235 -0
  69. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  70. arctrl/py/Core/Process/process_sequence.py +435 -0
  71. arctrl/py/Core/Process/protocol.py +175 -0
  72. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  73. arctrl/py/Core/Process/sample.py +82 -0
  74. arctrl/py/Core/Process/source.py +62 -0
  75. arctrl/py/Core/Table/__init__.py +0 -0
  76. arctrl/py/Core/Table/arc_table.py +1206 -0
  77. arctrl/py/Core/Table/arc_table_aux.py +1308 -0
  78. arctrl/py/Core/Table/arc_tables.py +574 -0
  79. arctrl/py/Core/Table/composite_cell.py +319 -0
  80. arctrl/py/Core/Table/composite_column.py +73 -0
  81. arctrl/py/Core/Table/composite_header.py +739 -0
  82. arctrl/py/Core/__init__.py +0 -0
  83. arctrl/py/Core/arc_types.py +5312 -0
  84. arctrl/py/Core/comment.py +128 -0
  85. arctrl/py/Core/comment_list.py +127 -0
  86. arctrl/py/Core/conversion.py +1375 -0
  87. arctrl/py/Core/data.py +247 -0
  88. arctrl/py/Core/data_context.py +157 -0
  89. arctrl/py/Core/data_file.py +112 -0
  90. arctrl/py/Core/datamap.py +217 -0
  91. arctrl/py/Core/identifier_setters.py +43 -0
  92. arctrl/py/Core/iproperty_value.py +36 -0
  93. arctrl/py/Core/ontology_annotation.py +298 -0
  94. arctrl/py/Core/ontology_source_reference.py +114 -0
  95. arctrl/py/Core/person.py +259 -0
  96. arctrl/py/Core/publication.py +161 -0
  97. arctrl/py/Core/template.py +231 -0
  98. arctrl/py/Core/templates.py +148 -0
  99. arctrl/py/Core/uri.py +11 -0
  100. arctrl/py/Core/value.py +188 -0
  101. arctrl/py/FileSystem/__init__.py +0 -0
  102. arctrl/py/FileSystem/commit.py +21 -0
  103. arctrl/py/FileSystem/default_gitattributes.py +1 -0
  104. arctrl/py/FileSystem/default_gitignore.py +1 -0
  105. arctrl/py/FileSystem/default_license.py +1 -0
  106. arctrl/py/FileSystem/file_system.py +58 -0
  107. arctrl/py/FileSystem/file_system_tree.py +483 -0
  108. arctrl/py/FileSystem/path.py +266 -0
  109. arctrl/py/Json/Datamap/__init__.py +0 -0
  110. arctrl/py/Json/Datamap/data_context.py +101 -0
  111. arctrl/py/Json/Datamap/datamap.py +53 -0
  112. arctrl/py/Json/Process/__init__.py +0 -0
  113. arctrl/py/Json/Process/assay_materials.py +46 -0
  114. arctrl/py/Json/Process/component.py +125 -0
  115. arctrl/py/Json/Process/factor.py +107 -0
  116. arctrl/py/Json/Process/factor_value.py +101 -0
  117. arctrl/py/Json/Process/material.py +226 -0
  118. arctrl/py/Json/Process/material_attribute.py +79 -0
  119. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  120. arctrl/py/Json/Process/material_type.py +53 -0
  121. arctrl/py/Json/Process/process.py +296 -0
  122. arctrl/py/Json/Process/process_input.py +83 -0
  123. arctrl/py/Json/Process/process_output.py +67 -0
  124. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  125. arctrl/py/Json/Process/protocol.py +354 -0
  126. arctrl/py/Json/Process/protocol_parameter.py +91 -0
  127. arctrl/py/Json/Process/sample.py +277 -0
  128. arctrl/py/Json/Process/source.py +214 -0
  129. arctrl/py/Json/Process/study_materials.py +52 -0
  130. arctrl/py/Json/Process/value.py +56 -0
  131. arctrl/py/Json/ROCrate/__init__.py +0 -0
  132. arctrl/py/Json/ROCrate/ldcontext.py +143 -0
  133. arctrl/py/Json/ROCrate/ldgraph.py +117 -0
  134. arctrl/py/Json/ROCrate/ldnode.py +304 -0
  135. arctrl/py/Json/ROCrate/ldref.py +44 -0
  136. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  137. arctrl/py/Json/Table/__init__.py +0 -0
  138. arctrl/py/Json/Table/arc_table.py +375 -0
  139. arctrl/py/Json/Table/cell_table.py +83 -0
  140. arctrl/py/Json/Table/composite_cell.py +136 -0
  141. arctrl/py/Json/Table/composite_header.py +67 -0
  142. arctrl/py/Json/Table/iotype.py +24 -0
  143. arctrl/py/Json/Table/oatable.py +82 -0
  144. arctrl/py/Json/Table/templates.py +281 -0
  145. arctrl/py/Json/__init__.py +0 -0
  146. arctrl/py/Json/assay.py +600 -0
  147. arctrl/py/Json/comment.py +206 -0
  148. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  149. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  150. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  151. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  152. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  153. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  154. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  155. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  156. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  157. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  158. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  159. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  160. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  161. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  162. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  163. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  164. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  165. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  166. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  167. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  168. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  169. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  170. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  171. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  172. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  173. arctrl/py/Json/converter_options.py +23 -0
  174. arctrl/py/Json/data.py +356 -0
  175. arctrl/py/Json/data_file.py +63 -0
  176. arctrl/py/Json/decode.py +271 -0
  177. arctrl/py/Json/encode.py +140 -0
  178. arctrl/py/Json/idtable.py +44 -0
  179. arctrl/py/Json/investigation.py +695 -0
  180. arctrl/py/Json/ontology_annotation.py +404 -0
  181. arctrl/py/Json/ontology_source_reference.py +255 -0
  182. arctrl/py/Json/person.py +658 -0
  183. arctrl/py/Json/property_value.py +359 -0
  184. arctrl/py/Json/publication.py +279 -0
  185. arctrl/py/Json/run.py +275 -0
  186. arctrl/py/Json/string_table.py +87 -0
  187. arctrl/py/Json/study.py +793 -0
  188. arctrl/py/Json/workflow.py +307 -0
  189. arctrl/py/JsonIO/Process/__init__.py +0 -0
  190. arctrl/py/JsonIO/Process/component.py +60 -0
  191. arctrl/py/JsonIO/Process/factor.py +36 -0
  192. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  193. arctrl/py/JsonIO/Process/material.py +60 -0
  194. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  195. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  196. arctrl/py/JsonIO/Process/material_type.py +36 -0
  197. arctrl/py/JsonIO/Process/process.py +60 -0
  198. arctrl/py/JsonIO/Process/process_input.py +38 -0
  199. arctrl/py/JsonIO/Process/process_output.py +60 -0
  200. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  201. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  202. arctrl/py/JsonIO/Process/protocol.py +60 -0
  203. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  204. arctrl/py/JsonIO/Process/sample.py +60 -0
  205. arctrl/py/JsonIO/Process/source.py +60 -0
  206. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  207. arctrl/py/JsonIO/Process/value.py +32 -0
  208. arctrl/py/JsonIO/Table/__init__.py +0 -0
  209. arctrl/py/JsonIO/Table/arc_table.py +103 -0
  210. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  211. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  212. arctrl/py/JsonIO/Table/compression.py +67 -0
  213. arctrl/py/JsonIO/Table/iotype.py +36 -0
  214. arctrl/py/JsonIO/Table/templates.py +113 -0
  215. arctrl/py/JsonIO/__init__.py +0 -0
  216. arctrl/py/JsonIO/assay.py +113 -0
  217. arctrl/py/JsonIO/comment.py +80 -0
  218. arctrl/py/JsonIO/data.py +60 -0
  219. arctrl/py/JsonIO/data_file.py +58 -0
  220. arctrl/py/JsonIO/datamap.py +36 -0
  221. arctrl/py/JsonIO/decode.py +9 -0
  222. arctrl/py/JsonIO/encode.py +1 -0
  223. arctrl/py/JsonIO/investigation.py +91 -0
  224. arctrl/py/JsonIO/ldobject.py +106 -0
  225. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  226. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  227. arctrl/py/JsonIO/person.py +82 -0
  228. arctrl/py/JsonIO/publication.py +82 -0
  229. arctrl/py/JsonIO/run.py +68 -0
  230. arctrl/py/JsonIO/study.py +114 -0
  231. arctrl/py/JsonIO/workflow.py +68 -0
  232. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  233. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  234. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  235. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  236. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  237. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  238. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  239. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  240. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  241. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  242. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  243. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  244. arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
  245. arctrl/py/ROCrate/LDTypes/comment.py +131 -0
  246. arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
  247. arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
  248. arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
  249. arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
  250. arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
  251. arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
  252. arctrl/py/ROCrate/LDTypes/file.py +281 -0
  253. arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
  254. arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
  255. arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
  256. arctrl/py/ROCrate/LDTypes/organization.py +83 -0
  257. arctrl/py/ROCrate/LDTypes/person.py +484 -0
  258. arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
  259. arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
  260. arctrl/py/ROCrate/LDTypes/sample.py +202 -0
  261. arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
  262. arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
  263. arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
  264. arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
  265. arctrl/py/ROCrate/__init__.py +0 -0
  266. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  267. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  268. arctrl/py/ROCrate/helper.py +8 -0
  269. arctrl/py/ROCrate/ldcontext.py +406 -0
  270. arctrl/py/ROCrate/ldobject.py +1247 -0
  271. arctrl/py/ROCrate/rocrate_context.py +51 -0
  272. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  273. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
  274. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  275. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
  276. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  277. arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
  278. arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
  279. arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
  280. arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
  281. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  282. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  283. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  284. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  285. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  286. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  287. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  288. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  289. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  290. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  291. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  292. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  293. arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
  294. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  295. arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
  296. arctrl/py/Spreadsheet/__init__.py +0 -0
  297. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  298. arctrl/py/Spreadsheet/arc_investigation.py +435 -0
  299. arctrl/py/Spreadsheet/arc_run.py +190 -0
  300. arctrl/py/Spreadsheet/arc_study.py +144 -0
  301. arctrl/py/Spreadsheet/arc_workflow.py +177 -0
  302. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  303. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  304. arctrl/py/Spreadsheet/datamap.py +43 -0
  305. arctrl/py/Spreadsheet/template.py +460 -0
  306. arctrl/py/ValidationPackages/__init__.py +0 -0
  307. arctrl/py/ValidationPackages/validation_package.py +82 -0
  308. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  309. arctrl/py/WebRequest/__init__.py +0 -0
  310. arctrl/py/WebRequest/web_request.py +9 -0
  311. arctrl/py/WebRequest/web_request_py.py +135 -0
  312. arctrl/py/WorkflowGraph/__init__.py +0 -0
  313. arctrl/py/WorkflowGraph/adapters.py +141 -0
  314. arctrl/py/WorkflowGraph/build_options.py +45 -0
  315. arctrl/py/WorkflowGraph/builder.py +720 -0
  316. arctrl/py/WorkflowGraph/graph_types.py +260 -0
  317. arctrl/py/WorkflowGraph/query_helpers.py +76 -0
  318. arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
  319. arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
  320. arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
  321. arctrl/py/Yaml/__init__.py +0 -0
  322. arctrl/py/Yaml/decode.py +1 -0
  323. arctrl/py/Yaml/encode.py +10 -0
  324. arctrl/py/Yaml/validation_package.py +77 -0
  325. arctrl/py/Yaml/validation_packages_config.py +86 -0
  326. arctrl/py/__init__.py +0 -0
  327. arctrl/py/arc.py +1891 -0
  328. arctrl/py/column_index.py +280 -0
  329. arctrl/py/conversion.py +142 -0
  330. arctrl/py/cross_async.py +76 -0
  331. arctrl/py/cwlrun_resolver.py +228 -0
  332. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  333. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  334. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  335. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  336. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  337. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  338. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  339. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  340. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  341. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  342. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  343. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  344. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  345. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  346. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  347. arctrl/py/fable_modules/fable_library/char.py +237 -0
  348. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  349. arctrl/py/fable_modules/fable_library/date.py +779 -0
  350. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  351. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  352. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  353. arctrl/py/fable_modules/fable_library/double.py +87 -0
  354. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  355. arctrl/py/fable_modules/fable_library/event.py +206 -0
  356. arctrl/py/fable_modules/fable_library/file.py +107 -0
  357. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  358. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  359. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  360. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  361. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  362. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  363. arctrl/py/fable_modules/fable_library/long.py +240 -0
  364. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  365. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  366. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  367. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  368. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  369. arctrl/py/fable_modules/fable_library/native.py +45 -0
  370. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  371. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  372. arctrl/py/fable_modules/fable_library/option.py +128 -0
  373. arctrl/py/fable_modules/fable_library/path.py +62 -0
  374. arctrl/py/fable_modules/fable_library/range.py +117 -0
  375. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  376. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  377. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  378. arctrl/py/fable_modules/fable_library/result.py +212 -0
  379. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  380. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  381. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  382. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  383. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  384. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  385. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  386. arctrl/py/fable_modules/fable_library/task.py +116 -0
  387. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  388. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  389. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  390. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  391. arctrl/py/fable_modules/fable_library/types.py +401 -0
  392. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  393. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  394. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  395. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  396. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  397. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  398. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  399. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  400. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  401. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  402. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  403. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  404. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  405. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  406. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  407. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  408. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  409. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  410. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  411. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  412. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  413. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  414. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  415. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  416. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  417. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  418. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  419. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  420. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  421. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
  422. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
  423. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  424. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  425. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  426. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  427. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  428. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  429. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  430. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  431. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  432. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
  433. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  434. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  435. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  436. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  437. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  438. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  439. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
  440. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  441. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  442. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
  443. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  444. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
  445. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
  446. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
  447. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
  448. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  449. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  450. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
  451. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
  452. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  453. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  454. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
  455. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  456. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  457. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
  458. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
  459. arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
  460. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
  461. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  462. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
  463. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  464. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  465. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  466. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
  467. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
  468. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
  469. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  470. arctrl/py/fable_modules/siren/__init__.py +0 -0
  471. arctrl/py/fable_modules/siren/config.py +1038 -0
  472. arctrl/py/fable_modules/siren/formatting.py +1121 -0
  473. arctrl/py/fable_modules/siren/siren.py +1941 -0
  474. arctrl/py/fable_modules/siren/siren_types.py +1229 -0
  475. arctrl/py/fable_modules/siren/theme_variables.py +517 -0
  476. arctrl/py/fable_modules/siren/util.py +37 -0
  477. arctrl/py/fable_modules/siren/yaml.py +101 -0
  478. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  479. arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
  480. arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
  481. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  482. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  483. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  484. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  485. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  486. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  487. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  488. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  489. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  490. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  491. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  492. arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
  493. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  494. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  495. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  496. arctrl/py/fable_modules/yamlicious/reader.py +739 -0
  497. arctrl/py/fable_modules/yamlicious/regex.py +29 -0
  498. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
  499. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  500. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  501. arctrl/py/json.py +389 -0
  502. arctrl/py/license.py +169 -0
  503. arctrl/py/rocrate_io.py +242 -0
  504. arctrl/py/template_web.py +23 -0
  505. arctrl/py/xlsx.py +212 -0
  506. arctrl/py/yaml.py +79 -0
  507. arctrl/rocrate.py +21 -0
  508. arctrl-3.0.0.dist-info/METADATA +157 -0
  509. arctrl-3.0.0.dist-info/RECORD +511 -0
  510. arctrl-3.0.0.dist-info/WHEEL +4 -0
  511. arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
@@ -0,0 +1,171 @@
1
+ from __future__ import annotations
2
+ from dataclasses import dataclass
3
+ from typing import Any
4
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
5
+ from ..fable_modules.dynamic_obj.dyn_obj import (remove_property, set_property, set_optional_property)
6
+ from ..fable_modules.fable_library.option import value as value_1
7
+ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, option_type, record_type, array_type, union_type, class_type)
8
+ from ..fable_modules.fable_library.types import (Record, Array, Union, FSharpRef)
9
+ from .cwltypes import CWLType
10
+
11
+ def _expr754() -> TypeInfo:
12
+ return record_type("ARCtrl.CWL.OutputBinding", [], OutputBinding, lambda: [("Glob", option_type(string_type))])
13
+
14
+
15
+ @dataclass(eq = False, repr = False, slots = True)
16
+ class OutputBinding(Record):
17
+ Glob: str | None
18
+
19
+ OutputBinding_reflection = _expr754
20
+
21
+ def OutputBinding_create_6DFDD678(glob: str | None=None) -> OutputBinding:
22
+ return OutputBinding(glob)
23
+
24
+
25
+ def _expr755() -> TypeInfo:
26
+ return union_type("ARCtrl.CWL.OutputSource", [], OutputSource, lambda: [[("Item", string_type)], [("Item", array_type(string_type))]])
27
+
28
+
29
+ class OutputSource(Union):
30
+ def __init__(self, tag: int, *fields: Any) -> None:
31
+ super().__init__()
32
+ self.tag: int = tag or 0
33
+ self.fields: Array[Any] = list(fields)
34
+
35
+ @staticmethod
36
+ def cases() -> list[str]:
37
+ return ["Single", "Multiple"]
38
+
39
+ def AsValues(self, __unit: None=None) -> Array[str]:
40
+ this: OutputSource = self
41
+ return this.fields[0] if (this.tag == 1) else [this.fields[0]]
42
+
43
+
44
+ OutputSource_reflection = _expr755
45
+
46
+ def _expr756() -> TypeInfo:
47
+ return class_type("ARCtrl.CWL.CWLOutput", None, CWLOutput, DynamicObj_reflection())
48
+
49
+
50
+ class CWLOutput(DynamicObj):
51
+ def __init__(self, name: str, type_: CWLType | None=None, output_binding: OutputBinding | None=None, output_source: OutputSource | None=None) -> None:
52
+ super().__init__()
53
+ this: FSharpRef[CWLOutput] = FSharpRef(None)
54
+ self.name: str = name
55
+ this.contents = self
56
+ self.init_004023: int = 1
57
+ set_optional_property("type", type_, this.contents)
58
+ set_optional_property("outputBinding", output_binding, this.contents)
59
+ set_optional_property("outputSource", output_source, this.contents)
60
+
61
+ @property
62
+ def Name(self, __unit: None=None) -> str:
63
+ this: CWLOutput = self
64
+ return this.name
65
+
66
+ @property
67
+ def Type_(self, __unit: None=None) -> CWLType | None:
68
+ this: CWLOutput = self
69
+ match_value: Any | None = this.TryGetPropertyValue("type")
70
+ if match_value is not None:
71
+ o: Any = value_1(match_value)
72
+ return o if isinstance(o, CWLType) else None
73
+
74
+ else:
75
+ return None
76
+
77
+
78
+ @Type_.setter
79
+ def Type_(self, value: CWLType | None=None) -> None:
80
+ this: CWLOutput = self
81
+ if value is None:
82
+ remove_property("type", this)
83
+
84
+ else:
85
+ set_property("type", value, this)
86
+
87
+
88
+ @property
89
+ def OutputBinding(self, __unit: None=None) -> OutputBinding | None:
90
+ this: CWLOutput = self
91
+ match_value: Any | None = this.TryGetPropertyValue("outputBinding")
92
+ if match_value is not None:
93
+ o: Any = value_1(match_value)
94
+ return o if isinstance(o, OutputBinding) else None
95
+
96
+ else:
97
+ return None
98
+
99
+
100
+ @OutputBinding.setter
101
+ def OutputBinding(self, value: OutputBinding | None=None) -> None:
102
+ this: CWLOutput = self
103
+ if value is None:
104
+ remove_property("outputBinding", this)
105
+
106
+ else:
107
+ set_property("outputBinding", value, this)
108
+
109
+
110
+ @property
111
+ def OutputSource(self, __unit: None=None) -> OutputSource | None:
112
+ this: CWLOutput = self
113
+ match_value: Any | None = this.TryGetPropertyValue("outputSource")
114
+ if match_value is not None:
115
+ o: Any = value_1(match_value)
116
+ return o if isinstance(o, OutputSource) else None
117
+
118
+ else:
119
+ return None
120
+
121
+
122
+ @OutputSource.setter
123
+ def OutputSource(self, value: OutputSource | None=None) -> None:
124
+ this: CWLOutput = self
125
+ (pattern_matching_result, v) = (None, None)
126
+ if value is None:
127
+ pattern_matching_result = 2
128
+
129
+ elif value.tag == 1:
130
+ if len(value.fields[0]) == 0:
131
+ pattern_matching_result = 0
132
+
133
+ else:
134
+ pattern_matching_result = 1
135
+ v = value
136
+
137
+
138
+ else:
139
+ pattern_matching_result = 1
140
+ v = value
141
+
142
+ if pattern_matching_result == 0:
143
+ remove_property("outputSource", this)
144
+
145
+ elif pattern_matching_result == 1:
146
+ set_property("outputSource", v, this)
147
+
148
+ elif pattern_matching_result == 2:
149
+ remove_property("outputSource", this)
150
+
151
+
152
+ def GetOutputSources(self, __unit: None=None) -> Array[str]:
153
+ this: CWLOutput = self
154
+ match_value: OutputSource | None = this.OutputSource
155
+ if match_value is not None:
156
+ output_source: OutputSource = match_value
157
+ return output_source.AsValues()
158
+
159
+ else:
160
+ return []
161
+
162
+
163
+
164
+ CWLOutput_reflection = _expr756
165
+
166
+ def CWLOutput__ctor_2471CF63(name: str, type_: CWLType | None=None, output_binding: OutputBinding | None=None, output_source: OutputSource | None=None) -> CWLOutput:
167
+ return CWLOutput(name, type_, output_binding, output_source)
168
+
169
+
170
+ __all__ = ["OutputBinding_reflection", "OutputBinding_create_6DFDD678", "OutputSource_reflection", "CWLOutput_reflection"]
171
+
@@ -0,0 +1,74 @@
1
+ from __future__ import annotations
2
+ from typing import Any
3
+ from ..fable_modules.fable_library.option import default_arg
4
+ from ..fable_modules.fable_library.reflection import (TypeInfo, class_type)
5
+ from ..fable_modules.fable_library.types import Array
6
+ from ..fable_modules.fable_library.util import safe_hash
7
+ from .cwltypes import CWLType
8
+ from .hash_helpers import (box_hash_array, box_hash_seq, hash_1, box_hash_option)
9
+
10
+ def _expr759() -> TypeInfo:
11
+ return class_type("ARCtrl.CWL.CWLParameterReference", None, CWLParameterReference)
12
+
13
+
14
+ class CWLParameterReference:
15
+ def __init__(self, key: str, values: Array[str] | None=None, type_: CWLType | None=None) -> None:
16
+ self._key: str = key
17
+ self._values: Array[str] = default_arg(values, [])
18
+ self._type: CWLType | None = type_
19
+
20
+ @property
21
+ def Key(self, __unit: None=None) -> str:
22
+ this: CWLParameterReference = self
23
+ return this._key
24
+
25
+ @Key.setter
26
+ def Key(self, value: str) -> None:
27
+ this: CWLParameterReference = self
28
+ this._key = value
29
+
30
+ @property
31
+ def Values(self, __unit: None=None) -> Array[str]:
32
+ this: CWLParameterReference = self
33
+ return this._values
34
+
35
+ @Values.setter
36
+ def Values(self, value: Array[str]) -> None:
37
+ this: CWLParameterReference = self
38
+ this._values = value
39
+
40
+ @property
41
+ def Type(self, __unit: None=None) -> CWLType | None:
42
+ this: CWLParameterReference = self
43
+ return this._type
44
+
45
+ @Type.setter
46
+ def Type(self, value: CWLType | None=None) -> None:
47
+ this: CWLParameterReference = self
48
+ this._type = value
49
+
50
+ def __hash__(self, __unit: None=None) -> Any:
51
+ this: CWLParameterReference = self
52
+ return box_hash_array([box_hash_seq(this.Values), hash_1(this.Key), box_hash_option(this.Type)])
53
+
54
+ def __eq__(self, obj: Any=None) -> bool:
55
+ this: CWLParameterReference = self
56
+ return this.StructurallyEquals(obj)
57
+
58
+ def StructurallyEquals(self, other: CWLParameterReference) -> bool:
59
+ this: CWLParameterReference = self
60
+ return safe_hash(this) == safe_hash(other)
61
+
62
+ def ReferenceEquals(self, other: CWLParameterReference) -> bool:
63
+ this: CWLParameterReference = self
64
+ return this is other
65
+
66
+
67
+ CWLParameterReference_reflection = _expr759
68
+
69
+ def CWLParameterReference__ctor_Z6E62A082(key: str, values: Array[str] | None=None, type_: CWLType | None=None) -> CWLParameterReference:
70
+ return CWLParameterReference(key, values, type_)
71
+
72
+
73
+ __all__ = ["CWLParameterReference_reflection"]
74
+
@@ -0,0 +1,350 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from dataclasses import dataclass
4
+ from typing import Any
5
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
6
+ from ..fable_modules.dynamic_obj.dyn_obj import set_optional_property
7
+ from ..fable_modules.fable_library.long import from_integer
8
+ from ..fable_modules.fable_library.option import bind
9
+ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, option_type, record_type, union_type, bool_type, int64_type, class_type, array_type)
10
+ from ..fable_modules.fable_library.seq import map
11
+ from ..fable_modules.fable_library.types import (Record, Array, Union, FSharpRef, int64)
12
+ from ..fable_modules.yamlicious.yamlicious_types import (YAMLElement, YAMLElement_reflection)
13
+ from .cwltypes import (SchemaSaladString, SchemaSaladString_reflection, DirentInstance_reflection, FileInstance_reflection, DirectoryInstance_reflection, SchemaDefRequirementType_reflection, SoftwarePackage_reflection)
14
+
15
+ def _expr738() -> TypeInfo:
16
+ return record_type("ARCtrl.CWL.DockerRequirement", [], DockerRequirement, lambda: [("DockerPull", option_type(string_type)), ("DockerFile", option_type(SchemaSaladString_reflection())), ("DockerImageId", option_type(string_type)), ("DockerLoad", option_type(string_type)), ("DockerImport", option_type(string_type)), ("DockerOutputDirectory", option_type(string_type))])
17
+
18
+
19
+ @dataclass(eq = False, repr = False, slots = True)
20
+ class DockerRequirement(Record):
21
+ DockerPull: str | None
22
+ DockerFile: SchemaSaladString | None
23
+ DockerImageId: str | None
24
+ DockerLoad: str | None
25
+ DockerImport: str | None
26
+ DockerOutputDirectory: str | None
27
+
28
+ DockerRequirement_reflection = _expr738
29
+
30
+ def DockerRequirement_create_Z14898805(docker_pull: str | None=None, docker_file: str | None=None, docker_file_reference: SchemaSaladString | None=None, docker_image_id: str | None=None, docker_load: str | None=None, docker_import: str | None=None, docker_output_directory: str | None=None) -> DockerRequirement:
31
+ return DockerRequirement(docker_pull, (None if (docker_file is None) else SchemaSaladString(0, docker_file)) if (docker_file_reference is None) else docker_file_reference, docker_image_id, docker_load, docker_import, docker_output_directory)
32
+
33
+
34
+ def _expr739() -> TypeInfo:
35
+ return record_type("ARCtrl.CWL.EnvironmentDef", [], EnvironmentDef, lambda: [("EnvName", string_type), ("EnvValue", string_type)])
36
+
37
+
38
+ @dataclass(eq = False, repr = False, slots = True)
39
+ class EnvironmentDef(Record):
40
+ EnvName: str
41
+ EnvValue: str
42
+
43
+ EnvironmentDef_reflection = _expr739
44
+
45
+ def _expr740() -> TypeInfo:
46
+ return union_type("ARCtrl.CWL.LoadListingEnum", [], LoadListingEnum, lambda: [[], [], []])
47
+
48
+
49
+ class LoadListingEnum(Union):
50
+ def __init__(self, tag: int, *fields: Any) -> None:
51
+ super().__init__()
52
+ self.tag: int = tag or 0
53
+ self.fields: Array[Any] = list(fields)
54
+
55
+ @staticmethod
56
+ def cases() -> list[str]:
57
+ return ["NoListing", "ShallowListing", "DeepListing"]
58
+
59
+
60
+ LoadListingEnum_reflection = _expr740
61
+
62
+ def LoadListingEnum_get_toCwlString(__unit: None=None) -> Callable[[LoadListingEnum], str]:
63
+ def _arrow741(_arg: LoadListingEnum) -> str:
64
+ return "shallow_listing" if (_arg.tag == 1) else ("deep_listing" if (_arg.tag == 2) else "no_listing")
65
+
66
+ return _arrow741
67
+
68
+
69
+ def LoadListingEnum_tryParse_Z721C83C5(value: str) -> LoadListingEnum | None:
70
+ if value == "no_listing":
71
+ return LoadListingEnum(0)
72
+
73
+ elif value == "shallow_listing":
74
+ return LoadListingEnum(1)
75
+
76
+ elif value == "deep_listing":
77
+ return LoadListingEnum(2)
78
+
79
+ else:
80
+ return None
81
+
82
+
83
+
84
+ def _expr742() -> TypeInfo:
85
+ return record_type("ARCtrl.CWL.LoadListingRequirementValue", [], LoadListingRequirementValue, lambda: [("LoadListing", LoadListingEnum_reflection())])
86
+
87
+
88
+ @dataclass(eq = False, repr = False, slots = True)
89
+ class LoadListingRequirementValue(Record):
90
+ LoadListing: LoadListingEnum
91
+
92
+ LoadListingRequirementValue_reflection = _expr742
93
+
94
+ def LoadListingRequirementValue_get_defaultNoListing(__unit: None=None) -> LoadListingRequirementValue:
95
+ return LoadListingRequirementValue(LoadListingEnum(0))
96
+
97
+
98
+ def _expr743() -> TypeInfo:
99
+ return record_type("ARCtrl.CWL.WorkReuseRequirementValue", [], WorkReuseRequirementValue, lambda: [("EnableReuse", bool_type)])
100
+
101
+
102
+ @dataclass(eq = False, repr = False, slots = True)
103
+ class WorkReuseRequirementValue(Record):
104
+ EnableReuse: bool
105
+
106
+ WorkReuseRequirementValue_reflection = _expr743
107
+
108
+ def WorkReuseRequirementValue_get_defaultEnabled(__unit: None=None) -> WorkReuseRequirementValue:
109
+ return WorkReuseRequirementValue(True)
110
+
111
+
112
+ def _expr744() -> TypeInfo:
113
+ return record_type("ARCtrl.CWL.NetworkAccessRequirementValue", [], NetworkAccessRequirementValue, lambda: [("NetworkAccess", bool_type)])
114
+
115
+
116
+ @dataclass(eq = False, repr = False, slots = True)
117
+ class NetworkAccessRequirementValue(Record):
118
+ NetworkAccess: bool
119
+
120
+ NetworkAccessRequirementValue_reflection = _expr744
121
+
122
+ def NetworkAccessRequirementValue_get_defaultEnabled(__unit: None=None) -> NetworkAccessRequirementValue:
123
+ return NetworkAccessRequirementValue(True)
124
+
125
+
126
+ def _expr745() -> TypeInfo:
127
+ return record_type("ARCtrl.CWL.InplaceUpdateRequirementValue", [], InplaceUpdateRequirementValue, lambda: [("InplaceUpdate", bool_type)])
128
+
129
+
130
+ @dataclass(eq = False, repr = False, slots = True)
131
+ class InplaceUpdateRequirementValue(Record):
132
+ InplaceUpdate: bool
133
+
134
+ InplaceUpdateRequirementValue_reflection = _expr745
135
+
136
+ def InplaceUpdateRequirementValue_get_defaultEnabled(__unit: None=None) -> InplaceUpdateRequirementValue:
137
+ return InplaceUpdateRequirementValue(True)
138
+
139
+
140
+ def _expr746() -> TypeInfo:
141
+ return union_type("ARCtrl.CWL.ToolTimeLimitValue", [], ToolTimeLimitValue, lambda: [[("Item", int64_type)], [("Item", string_type)]])
142
+
143
+
144
+ class ToolTimeLimitValue(Union):
145
+ def __init__(self, tag: int, *fields: Any) -> None:
146
+ super().__init__()
147
+ self.tag: int = tag or 0
148
+ self.fields: Array[Any] = list(fields)
149
+
150
+ @staticmethod
151
+ def cases() -> list[str]:
152
+ return ["ToolTimeLimitSeconds", "ToolTimeLimitExpression"]
153
+
154
+
155
+ ToolTimeLimitValue_reflection = _expr746
156
+
157
+ def _expr747() -> TypeInfo:
158
+ return class_type("ARCtrl.CWL.ResourceRequirementInstance", None, ResourceRequirementInstance, DynamicObj_reflection())
159
+
160
+
161
+ class ResourceRequirementInstance(DynamicObj):
162
+ def __init__(self, cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> None:
163
+ super().__init__()
164
+ this: FSharpRef[ResourceRequirementInstance] = FSharpRef(None)
165
+ this.contents = self
166
+ self.init_004099: int = 1
167
+ set_optional_property("coresMin", cores_min, this.contents)
168
+ set_optional_property("coresMax", cores_max, this.contents)
169
+ set_optional_property("ramMin", ram_min, this.contents)
170
+ set_optional_property("ramMax", ram_max, this.contents)
171
+ set_optional_property("tmpdirMin", tmpdir_min, this.contents)
172
+ set_optional_property("tmpdirMax", tmpdir_max, this.contents)
173
+ set_optional_property("outdirMin", outdir_min, this.contents)
174
+ set_optional_property("outdirMax", outdir_max, this.contents)
175
+
176
+
177
+ ResourceRequirementInstance_reflection = _expr747
178
+
179
+ def ResourceRequirementInstance__ctor_D76FC00(cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> ResourceRequirementInstance:
180
+ return ResourceRequirementInstance(cores_min, cores_max, ram_min, ram_max, tmpdir_min, tmpdir_max, outdir_min, outdir_max)
181
+
182
+
183
+ def ResourceRequirementInstance__TryGetInt64_Z721C83C5(this: ResourceRequirementInstance, name: str) -> int64 | None:
184
+ def binder_1(_arg_1: Any=None, this: Any=this, name: Any=name) -> int64 | None:
185
+ if str(type(_arg_1)) == "<class \'fable_modules.fable_library.types.int64\'>":
186
+ return _arg_1
187
+
188
+ elif str(type(_arg_1)) == "<class \'int\'>":
189
+ return from_integer(_arg_1, False, 2)
190
+
191
+ else:
192
+ return None
193
+
194
+
195
+ def binder(_arg: Any=None, this: Any=this, name: Any=name) -> Any | None:
196
+ return _arg
197
+
198
+ return bind(binder_1, bind(binder, this.TryGetPropertyValue(name)))
199
+
200
+
201
+ def ResourceRequirementInstance__TryGetFloat_Z721C83C5(this: ResourceRequirementInstance, name: str) -> float | None:
202
+ def binder_1(_arg_1: Any=None, this: Any=this, name: Any=name) -> float | None:
203
+ if str(type(_arg_1)) == "<class \'float\'>":
204
+ return _arg_1
205
+
206
+ else:
207
+ return None
208
+
209
+
210
+ def binder(_arg: Any=None, this: Any=this, name: Any=name) -> Any | None:
211
+ return _arg
212
+
213
+ return bind(binder_1, bind(binder, this.TryGetPropertyValue(name)))
214
+
215
+
216
+ def ResourceRequirementInstance__TryGetExpression_Z721C83C5(this: ResourceRequirementInstance, name: str) -> str | None:
217
+ def binder_1(_arg_1: Any=None, this: Any=this, name: Any=name) -> str | None:
218
+ if str(type(_arg_1)) == "<class \'str\'>":
219
+ return _arg_1
220
+
221
+ else:
222
+ return None
223
+
224
+
225
+ def binder(_arg: Any=None, this: Any=this, name: Any=name) -> Any | None:
226
+ return _arg
227
+
228
+ return bind(binder_1, bind(binder, this.TryGetPropertyValue(name)))
229
+
230
+
231
+ def _expr748() -> TypeInfo:
232
+ return union_type("ARCtrl.CWL.InitialWorkDirEntry", [], InitialWorkDirEntry, lambda: [[("Item", DirentInstance_reflection())], [("Item", SchemaSaladString_reflection())], [("Item", FileInstance_reflection())], [("Item", DirectoryInstance_reflection())]])
233
+
234
+
235
+ class InitialWorkDirEntry(Union):
236
+ def __init__(self, tag: int, *fields: Any) -> None:
237
+ super().__init__()
238
+ self.tag: int = tag or 0
239
+ self.fields: Array[Any] = list(fields)
240
+
241
+ @staticmethod
242
+ def cases() -> list[str]:
243
+ return ["DirentEntry", "StringEntry", "FileEntry", "DirectoryEntry"]
244
+
245
+
246
+ InitialWorkDirEntry_reflection = _expr748
247
+
248
+ def _expr749() -> TypeInfo:
249
+ return record_type("ARCtrl.CWL.InlineJavascriptRequirementValue", [], InlineJavascriptRequirementValue, lambda: [("ExpressionLib", option_type(array_type(string_type)))])
250
+
251
+
252
+ @dataclass(eq = False, repr = False, slots = True)
253
+ class InlineJavascriptRequirementValue(Record):
254
+ ExpressionLib: Array[str] | None
255
+
256
+ InlineJavascriptRequirementValue_reflection = _expr749
257
+
258
+ def InlineJavascriptRequirementValue_get_defaultEmpty(__unit: None=None) -> InlineJavascriptRequirementValue:
259
+ return InlineJavascriptRequirementValue(None)
260
+
261
+
262
+ def _expr750() -> TypeInfo:
263
+ return record_type("ARCtrl.CWL.HintUnknownValue", [], HintUnknownValue, lambda: [("Class", option_type(string_type)), ("Raw", YAMLElement_reflection())])
264
+
265
+
266
+ @dataclass(eq = False, repr = False, slots = True)
267
+ class HintUnknownValue(Record):
268
+ Class: str | None
269
+ Raw: YAMLElement
270
+
271
+ HintUnknownValue_reflection = _expr750
272
+
273
+ def _expr751() -> TypeInfo:
274
+ return union_type("ARCtrl.CWL.Requirement", [], Requirement, lambda: [[("Item", InlineJavascriptRequirementValue_reflection())], [("Item", array_type(SchemaDefRequirementType_reflection()))], [("Item", DockerRequirement_reflection())], [("Item", array_type(SoftwarePackage_reflection()))], [("Item", LoadListingRequirementValue_reflection())], [("Item", array_type(InitialWorkDirEntry_reflection()))], [("Item", array_type(EnvironmentDef_reflection()))], [], [("Item", ResourceRequirementInstance_reflection())], [("Item", WorkReuseRequirementValue_reflection())], [("Item", string_type)], [("Item", NetworkAccessRequirementValue_reflection())], [("Item", string_type)], [("Item", InplaceUpdateRequirementValue_reflection())], [("Item", ToolTimeLimitValue_reflection())], [], [], [], []])
275
+
276
+
277
+ class Requirement(Union):
278
+ def __init__(self, tag: int, *fields: Any) -> None:
279
+ super().__init__()
280
+ self.tag: int = tag or 0
281
+ self.fields: Array[Any] = list(fields)
282
+
283
+ @staticmethod
284
+ def cases() -> list[str]:
285
+ return ["InlineJavascriptRequirement", "SchemaDefRequirement", "DockerRequirement", "SoftwareRequirement", "LoadListingRequirement", "InitialWorkDirRequirement", "EnvVarRequirement", "ShellCommandRequirement", "ResourceRequirement", "WorkReuseRequirement", "WorkReuseExpressionRequirement", "NetworkAccessRequirement", "NetworkAccessExpressionRequirement", "InplaceUpdateRequirement", "ToolTimeLimitRequirement", "SubworkflowFeatureRequirement", "ScatterFeatureRequirement", "MultipleInputFeatureRequirement", "StepInputExpressionRequirement"]
286
+
287
+
288
+ Requirement_reflection = _expr751
289
+
290
+ def Requirement_get_defaultInlineJavascriptRequirement(__unit: None=None) -> Requirement:
291
+ return Requirement(0, InlineJavascriptRequirementValue_get_defaultEmpty())
292
+
293
+
294
+ def Requirement_get_defaultLoadListingNoListing(__unit: None=None) -> Requirement:
295
+ return Requirement(4, LoadListingRequirementValue_get_defaultNoListing())
296
+
297
+
298
+ def Requirement_get_defaultWorkReuseEnabled(__unit: None=None) -> Requirement:
299
+ return Requirement(9, WorkReuseRequirementValue_get_defaultEnabled())
300
+
301
+
302
+ def Requirement_get_defaultNetworkAccessEnabled(__unit: None=None) -> Requirement:
303
+ return Requirement(11, NetworkAccessRequirementValue_get_defaultEnabled())
304
+
305
+
306
+ def Requirement_get_defaultInplaceUpdateEnabled(__unit: None=None) -> Requirement:
307
+ return Requirement(13, InplaceUpdateRequirementValue_get_defaultEnabled())
308
+
309
+
310
+ def Requirement_defaultToolTimeLimitSeconds_Z524259C1(seconds: int64) -> Requirement:
311
+ return Requirement(14, ToolTimeLimitValue(0, seconds))
312
+
313
+
314
+ def _expr752() -> TypeInfo:
315
+ return union_type("ARCtrl.CWL.HintEntry", [], HintEntry, lambda: [[("Item", Requirement_reflection())], [("Item", HintUnknownValue_reflection())]])
316
+
317
+
318
+ class HintEntry(Union):
319
+ def __init__(self, tag: int, *fields: Any) -> None:
320
+ super().__init__()
321
+ self.tag: int = tag or 0
322
+ self.fields: Array[Any] = list(fields)
323
+
324
+ @staticmethod
325
+ def cases() -> list[str]:
326
+ return ["KnownHint", "UnknownHint"]
327
+
328
+
329
+ HintEntry_reflection = _expr752
330
+
331
+ def HintEntry_ofRequirement_Z5074C2C8(requirement: Requirement) -> HintEntry:
332
+ return HintEntry(0, requirement)
333
+
334
+
335
+ def HintEntry_ofRequirements_1F652241(requirements: Array[Requirement]) -> Array[HintEntry]:
336
+ def mapping(Item: Requirement, requirements: Any=requirements) -> HintEntry:
337
+ return HintEntry(0, Item)
338
+
339
+ return list(map(mapping, requirements))
340
+
341
+
342
+ def HintEntry_get_tryAsRequirement(__unit: None=None) -> Callable[[HintEntry], Requirement | None]:
343
+ def _arrow753(_arg: HintEntry) -> Requirement | None:
344
+ return None if (_arg.tag == 1) else _arg.fields[0]
345
+
346
+ return _arrow753
347
+
348
+
349
+ __all__ = ["DockerRequirement_reflection", "DockerRequirement_create_Z14898805", "EnvironmentDef_reflection", "LoadListingEnum_reflection", "LoadListingEnum_get_toCwlString", "LoadListingEnum_tryParse_Z721C83C5", "LoadListingRequirementValue_reflection", "LoadListingRequirementValue_get_defaultNoListing", "WorkReuseRequirementValue_reflection", "WorkReuseRequirementValue_get_defaultEnabled", "NetworkAccessRequirementValue_reflection", "NetworkAccessRequirementValue_get_defaultEnabled", "InplaceUpdateRequirementValue_reflection", "InplaceUpdateRequirementValue_get_defaultEnabled", "ToolTimeLimitValue_reflection", "ResourceRequirementInstance_reflection", "ResourceRequirementInstance__TryGetInt64_Z721C83C5", "ResourceRequirementInstance__TryGetFloat_Z721C83C5", "ResourceRequirementInstance__TryGetExpression_Z721C83C5", "InitialWorkDirEntry_reflection", "InlineJavascriptRequirementValue_reflection", "InlineJavascriptRequirementValue_get_defaultEmpty", "HintUnknownValue_reflection", "Requirement_reflection", "Requirement_get_defaultInlineJavascriptRequirement", "Requirement_get_defaultLoadListingNoListing", "Requirement_get_defaultWorkReuseEnabled", "Requirement_get_defaultNetworkAccessEnabled", "Requirement_get_defaultInplaceUpdateEnabled", "Requirement_defaultToolTimeLimitSeconds_Z524259C1", "HintEntry_reflection", "HintEntry_ofRequirement_Z5074C2C8", "HintEntry_ofRequirements_1F652241", "HintEntry_get_tryAsRequirement"]
350
+