arctrl 3.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +23 -0
- arctrl/cwl.py +12 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwlprocessing_unit.py +221 -0
- arctrl/py/CWL/cwltypes.py +364 -0
- arctrl/py/CWL/decode.py +3532 -0
- arctrl/py/CWL/encode.py +1905 -0
- arctrl/py/CWL/expression_tool_description.py +192 -0
- arctrl/py/CWL/hash_helpers.py +60 -0
- arctrl/py/CWL/inputs.py +122 -0
- arctrl/py/CWL/operation_description.py +169 -0
- arctrl/py/CWL/outputs.py +171 -0
- arctrl/py/CWL/parameter_reference.py +74 -0
- arctrl/py/CWL/requirements.py +350 -0
- arctrl/py/CWL/tool_description.py +192 -0
- arctrl/py/CWL/workflow_description.py +181 -0
- arctrl/py/CWL/workflow_steps.py +354 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +89 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +291 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +213 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +396 -0
- arctrl/py/Contract/git.py +116 -0
- arctrl/py/Contract/license.py +58 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +350 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Conversion/__init__.py +0 -0
- arctrl/py/Conversion/assay.py +151 -0
- arctrl/py/Conversion/basic.py +559 -0
- arctrl/py/Conversion/column_index.py +91 -0
- arctrl/py/Conversion/datamap.py +36 -0
- arctrl/py/Conversion/date_time.py +32 -0
- arctrl/py/Conversion/investigation.py +171 -0
- arctrl/py/Conversion/person.py +148 -0
- arctrl/py/Conversion/process.py +828 -0
- arctrl/py/Conversion/run.py +367 -0
- arctrl/py/Conversion/scholarly_article.py +163 -0
- arctrl/py/Conversion/study.py +99 -0
- arctrl/py/Conversion/table.py +229 -0
- arctrl/py/Conversion/workflow.py +680 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +512 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +290 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1206 -0
- arctrl/py/Core/Table/arc_table_aux.py +1308 -0
- arctrl/py/Core/Table/arc_tables.py +574 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5312 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1375 -0
- arctrl/py/Core/data.py +247 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/datamap.py +217 -0
- arctrl/py/Core/identifier_setters.py +43 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +298 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +1 -0
- arctrl/py/FileSystem/default_gitignore.py +1 -0
- arctrl/py/FileSystem/default_license.py +1 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +483 -0
- arctrl/py/FileSystem/path.py +266 -0
- arctrl/py/Json/Datamap/__init__.py +0 -0
- arctrl/py/Json/Datamap/data_context.py +101 -0
- arctrl/py/Json/Datamap/datamap.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +125 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +91 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +143 -0
- arctrl/py/Json/ROCrate/ldgraph.py +117 -0
- arctrl/py/Json/ROCrate/ldnode.py +304 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +375 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +271 -0
- arctrl/py/Json/encode.py +140 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/run.py +275 -0
- arctrl/py/Json/string_table.py +87 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/Json/workflow.py +307 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +103 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +67 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/datamap.py +36 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +91 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/run.py +68 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/JsonIO/workflow.py +68 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
- arctrl/py/ROCrate/LDTypes/comment.py +131 -0
- arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
- arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
- arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
- arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
- arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
- arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
- arctrl/py/ROCrate/LDTypes/file.py +281 -0
- arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
- arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
- arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
- arctrl/py/ROCrate/LDTypes/organization.py +83 -0
- arctrl/py/ROCrate/LDTypes/person.py +484 -0
- arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
- arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
- arctrl/py/ROCrate/LDTypes/sample.py +202 -0
- arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
- arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
- arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
- arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +406 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +435 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +177 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/datamap.py +43 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/WorkflowGraph/__init__.py +0 -0
- arctrl/py/WorkflowGraph/adapters.py +141 -0
- arctrl/py/WorkflowGraph/build_options.py +45 -0
- arctrl/py/WorkflowGraph/builder.py +720 -0
- arctrl/py/WorkflowGraph/graph_types.py +260 -0
- arctrl/py/WorkflowGraph/query_helpers.py +76 -0
- arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
- arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
- arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1891 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +142 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/cwlrun_resolver.py +228 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
- arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/siren/__init__.py +0 -0
- arctrl/py/fable_modules/siren/config.py +1038 -0
- arctrl/py/fable_modules/siren/formatting.py +1121 -0
- arctrl/py/fable_modules/siren/siren.py +1941 -0
- arctrl/py/fable_modules/siren/siren_types.py +1229 -0
- arctrl/py/fable_modules/siren/theme_variables.py +517 -0
- arctrl/py/fable_modules/siren/util.py +37 -0
- arctrl/py/fable_modules/siren/yaml.py +101 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +739 -0
- arctrl/py/fable_modules/yamlicious/regex.py +29 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +389 -0
- arctrl/py/license.py +169 -0
- arctrl/py/rocrate_io.py +242 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +212 -0
- arctrl/py/yaml.py +79 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0.dist-info/METADATA +157 -0
- arctrl-3.0.0.dist-info/RECORD +511 -0
- arctrl-3.0.0.dist-info/WHEEL +4 -0
- arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
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from __future__ import annotations
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from typing import (Any, TypeVar)
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from ..fable_modules.fable_library.list import (choose, of_array, FSharpList)
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from ..fable_modules.fable_library.option import map
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from ..fable_modules.fable_library.seq import map as map_1
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from ..fable_modules.fable_library.types import Array
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from ..fable_modules.fable_library.util import IEnumerable_1
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from ..fable_modules.thoth_json_core.decode import (object, IRequiredGetter, string, IOptionalGetter, resize_array, IGetters)
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from ..fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1, Decoder_1)
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from ..Core.arc_types import ArcWorkflow
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from ..Core.comment import Comment
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from ..Core.datamap import Datamap
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from ..Core.ontology_annotation import OntologyAnnotation
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from ..Core.person import Person
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from ..Core.Process.component import Component
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from ..Core.Table.composite_cell import CompositeCell
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from .comment import (encoder as encoder_4, decoder as decoder_4)
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from .Datamap.datamap import (encoder as encoder_1, decoder as decoder_2, encoder_compressed as encoder_compressed_1, decoder_compressed as decoder_compressed_1)
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from .encode import (try_include, try_include_seq)
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from .ontology_annotation import (OntologyAnnotation_encoder, OntologyAnnotation_decoder)
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from .person import (encoder as encoder_3, decoder as decoder_3)
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from .Process.component import (encoder as encoder_2, decoder as decoder_1)
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__A_ = TypeVar("__A_")
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def encoder(workflow: ArcWorkflow) -> IEncodable:
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def chooser(tupled_arg: tuple[str, IEncodable | None], workflow: Any=workflow) -> tuple[str, IEncodable] | None:
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def mapping(v_1: IEncodable, tupled_arg: Any=tupled_arg) -> tuple[str, IEncodable]:
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return (tupled_arg[0], v_1)
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return map(mapping, tupled_arg[1])
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def _arrow3666(__unit: None=None, workflow: Any=workflow) -> IEncodable:
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value: str = workflow.Identifier
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class ObjectExpr3665(IEncodable):
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def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
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return helpers.encode_string(value)
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return ObjectExpr3665()
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def _arrow3667(oa: OntologyAnnotation, workflow: Any=workflow) -> IEncodable:
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return OntologyAnnotation_encoder(oa)
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def _arrow3669(value_1: str, workflow: Any=workflow) -> IEncodable:
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class ObjectExpr3668(IEncodable):
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def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
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return helpers_1.encode_string(value_1)
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return ObjectExpr3668()
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def _arrow3671(value_3: str, workflow: Any=workflow) -> IEncodable:
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class ObjectExpr3670(IEncodable):
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def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
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return ObjectExpr3670()
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def _arrow3673(value_5: str, workflow: Any=workflow) -> IEncodable:
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class ObjectExpr3672(IEncodable):
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def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
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return helpers_3.encode_string(value_5)
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return ObjectExpr3672()
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def _arrow3675(value_7: str, workflow: Any=workflow) -> IEncodable:
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class ObjectExpr3674(IEncodable):
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def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
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def _arrow3676(dm: Datamap, workflow: Any=workflow) -> IEncodable:
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def _arrow3678(value_9: str, workflow: Any=workflow) -> IEncodable:
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def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
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def _arrow3679(oa_1: OntologyAnnotation, workflow: Any=workflow) -> IEncodable:
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def _arrow3680(value_11: Component, workflow: Any=workflow) -> IEncodable:
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def _arrow3681(person: Person, workflow: Any=workflow) -> IEncodable:
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def _arrow3682(comment: Comment, workflow: Any=workflow) -> IEncodable:
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values: FSharpList[tuple[str, IEncodable]] = choose(chooser, of_array([("Identifier", _arrow3666()), try_include("WorkflowType", _arrow3667, workflow.WorkflowType), try_include("Title", _arrow3669, workflow.Title), try_include("URI", _arrow3671, workflow.URI), try_include("Description", _arrow3673, workflow.Description), try_include("Version", _arrow3675, workflow.Version), try_include("Datamap", _arrow3676, workflow.Datamap), try_include_seq("SubWorkflowIdentifiers", _arrow3678, workflow.SubWorkflowIdentifiers), try_include_seq("Parameters", _arrow3679, workflow.Parameters), try_include_seq("Components", _arrow3680, workflow.Components), try_include_seq("Contacts", _arrow3681, workflow.Contacts), try_include_seq("Comments", _arrow3682, workflow.Comments)]))
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class ObjectExpr3683(IEncodable):
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def Encode(self, helpers_6: IEncoderHelpers_1[Any], workflow: Any=workflow) -> Any:
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def mapping_1(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
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return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers_6))
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arg: IEnumerable_1[tuple[str, __A_]] = map_1(mapping_1, values)
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return helpers_6.encode_object(arg)
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return ObjectExpr3683()
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def _arrow3696(get: IGetters) -> ArcWorkflow:
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def _arrow3684(__unit: None=None) -> str:
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object_arg: IRequiredGetter = get.Required
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return object_arg.Field("Identifier", string)
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def _arrow3685(__unit: None=None) -> str | None:
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object_arg_1: IOptionalGetter = get.Optional
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return object_arg_1.Field("Title", string)
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def _arrow3686(__unit: None=None) -> str | None:
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object_arg_2: IOptionalGetter = get.Optional
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return object_arg_2.Field("Description", string)
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def _arrow3687(__unit: None=None) -> OntologyAnnotation | None:
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object_arg_3: IOptionalGetter = get.Optional
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return object_arg_3.Field("WorkflowType", OntologyAnnotation_decoder)
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def _arrow3688(__unit: None=None) -> str | None:
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object_arg_4: IOptionalGetter = get.Optional
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return object_arg_4.Field("URI", string)
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def _arrow3689(__unit: None=None) -> str | None:
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object_arg_5: IOptionalGetter = get.Optional
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return object_arg_5.Field("Version", string)
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def _arrow3690(__unit: None=None) -> Array[str] | None:
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arg_13: Decoder_1[Array[str]] = resize_array(string)
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object_arg_6: IOptionalGetter = get.Optional
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return object_arg_6.Field("SubWorkflowIdentifiers", arg_13)
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def _arrow3691(__unit: None=None) -> Array[OntologyAnnotation] | None:
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arg_15: Decoder_1[Array[OntologyAnnotation]] = resize_array(OntologyAnnotation_decoder)
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object_arg_7: IOptionalGetter = get.Optional
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return object_arg_7.Field("Parameters", arg_15)
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def _arrow3692(__unit: None=None) -> Array[Component] | None:
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arg_17: Decoder_1[Array[Component]] = resize_array(decoder_1)
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object_arg_8: IOptionalGetter = get.Optional
|
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return object_arg_8.Field("Components", arg_17)
|
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+
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def _arrow3693(__unit: None=None) -> Datamap | None:
|
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object_arg_9: IOptionalGetter = get.Optional
|
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return object_arg_9.Field("Datamap", decoder_2)
|
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+
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def _arrow3694(__unit: None=None) -> Array[Person] | None:
|
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arg_21: Decoder_1[Array[Person]] = resize_array(decoder_3)
|
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|
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object_arg_10: IOptionalGetter = get.Optional
|
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|
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return object_arg_10.Field("Contacts", arg_21)
|
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+
|
|
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|
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def _arrow3695(__unit: None=None) -> Array[Comment] | None:
|
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arg_23: Decoder_1[Array[Comment]] = resize_array(decoder_4)
|
|
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|
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object_arg_11: IOptionalGetter = get.Optional
|
|
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|
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return object_arg_11.Field("Comments", arg_23)
|
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|
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return ArcWorkflow.create(_arrow3684(), _arrow3685(), _arrow3686(), _arrow3687(), _arrow3688(), _arrow3689(), _arrow3690(), _arrow3691(), _arrow3692(), _arrow3693(), _arrow3694(), None, _arrow3695())
|
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decoder: Decoder_1[ArcWorkflow] = object(_arrow3696)
|
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def encoder_compressed(string_table: Any, oa_table: Any, cell_table: Any, workflow: ArcWorkflow) -> IEncodable:
|
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def chooser(tupled_arg: tuple[str, IEncodable | None], string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> tuple[str, IEncodable] | None:
|
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|
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def mapping(v_1: IEncodable, tupled_arg: Any=tupled_arg) -> tuple[str, IEncodable]:
|
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return (tupled_arg[0], v_1)
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return map(mapping, tupled_arg[1])
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def _arrow3700(__unit: None=None, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
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value: str = workflow.Identifier
|
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|
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class ObjectExpr3699(IEncodable):
|
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|
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def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
|
|
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|
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return helpers.encode_string(value)
|
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return ObjectExpr3699()
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def _arrow3701(oa: OntologyAnnotation, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
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return OntologyAnnotation_encoder(oa)
|
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def _arrow3703(value_1: str, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
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class ObjectExpr3702(IEncodable):
|
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def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
|
|
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|
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return helpers_1.encode_string(value_1)
|
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+
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return ObjectExpr3702()
|
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def _arrow3705(value_3: str, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
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class ObjectExpr3704(IEncodable):
|
|
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|
+
def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
|
|
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|
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return helpers_2.encode_string(value_3)
|
|
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|
+
|
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|
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return ObjectExpr3704()
|
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def _arrow3707(value_5: str, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
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|
+
class ObjectExpr3706(IEncodable):
|
|
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|
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def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
|
|
200
|
+
return helpers_3.encode_string(value_5)
|
|
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|
+
|
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|
+
return ObjectExpr3706()
|
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+
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|
+
def _arrow3709(value_7: str, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
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|
+
class ObjectExpr3708(IEncodable):
|
|
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|
+
def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
|
|
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|
+
return helpers_4.encode_string(value_7)
|
|
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|
+
|
|
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|
+
return ObjectExpr3708()
|
|
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|
+
|
|
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|
+
def _arrow3710(dm: Datamap, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
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|
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return encoder_compressed_1(string_table, oa_table, cell_table, dm)
|
|
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|
+
|
|
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|
+
def _arrow3712(value_9: str, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
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|
+
class ObjectExpr3711(IEncodable):
|
|
216
|
+
def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
|
|
217
|
+
return helpers_5.encode_string(value_9)
|
|
218
|
+
|
|
219
|
+
return ObjectExpr3711()
|
|
220
|
+
|
|
221
|
+
def _arrow3713(oa_1: OntologyAnnotation, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
222
|
+
return OntologyAnnotation_encoder(oa_1)
|
|
223
|
+
|
|
224
|
+
def _arrow3714(value_11: Component, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
225
|
+
return encoder_2(value_11)
|
|
226
|
+
|
|
227
|
+
def _arrow3715(person: Person, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
228
|
+
return encoder_3(person)
|
|
229
|
+
|
|
230
|
+
def _arrow3716(comment: Comment, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> IEncodable:
|
|
231
|
+
return encoder_4(comment)
|
|
232
|
+
|
|
233
|
+
values: FSharpList[tuple[str, IEncodable]] = choose(chooser, of_array([("Identifier", _arrow3700()), try_include("WorkflowType", _arrow3701, workflow.WorkflowType), try_include("Title", _arrow3703, workflow.Title), try_include("URI", _arrow3705, workflow.URI), try_include("Description", _arrow3707, workflow.Description), try_include("Version", _arrow3709, workflow.Version), try_include("Datamap", _arrow3710, workflow.Datamap), try_include_seq("SubWorkflowIdentifiers", _arrow3712, workflow.SubWorkflowIdentifiers), try_include_seq("Parameters", _arrow3713, workflow.Parameters), try_include_seq("Components", _arrow3714, workflow.Components), try_include_seq("Contacts", _arrow3715, workflow.Contacts), try_include_seq("Comments", _arrow3716, workflow.Comments)]))
|
|
234
|
+
class ObjectExpr3717(IEncodable):
|
|
235
|
+
def Encode(self, helpers_6: IEncoderHelpers_1[Any], string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, workflow: Any=workflow) -> Any:
|
|
236
|
+
def mapping_1(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
|
|
237
|
+
return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers_6))
|
|
238
|
+
|
|
239
|
+
arg: IEnumerable_1[tuple[str, __A_]] = map_1(mapping_1, values)
|
|
240
|
+
return helpers_6.encode_object(arg)
|
|
241
|
+
|
|
242
|
+
return ObjectExpr3717()
|
|
243
|
+
|
|
244
|
+
|
|
245
|
+
def decoder_compressed(string_table: Array[str], oa_table: Array[OntologyAnnotation], cell_table: Array[CompositeCell]) -> Decoder_1[ArcWorkflow]:
|
|
246
|
+
def _arrow3730(get: IGetters, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table) -> ArcWorkflow:
|
|
247
|
+
def _arrow3718(__unit: None=None) -> str:
|
|
248
|
+
object_arg: IRequiredGetter = get.Required
|
|
249
|
+
return object_arg.Field("Identifier", string)
|
|
250
|
+
|
|
251
|
+
def _arrow3719(__unit: None=None) -> str | None:
|
|
252
|
+
object_arg_1: IOptionalGetter = get.Optional
|
|
253
|
+
return object_arg_1.Field("Title", string)
|
|
254
|
+
|
|
255
|
+
def _arrow3720(__unit: None=None) -> str | None:
|
|
256
|
+
object_arg_2: IOptionalGetter = get.Optional
|
|
257
|
+
return object_arg_2.Field("Description", string)
|
|
258
|
+
|
|
259
|
+
def _arrow3721(__unit: None=None) -> OntologyAnnotation | None:
|
|
260
|
+
object_arg_3: IOptionalGetter = get.Optional
|
|
261
|
+
return object_arg_3.Field("WorkflowType", OntologyAnnotation_decoder)
|
|
262
|
+
|
|
263
|
+
def _arrow3722(__unit: None=None) -> str | None:
|
|
264
|
+
object_arg_4: IOptionalGetter = get.Optional
|
|
265
|
+
return object_arg_4.Field("URI", string)
|
|
266
|
+
|
|
267
|
+
def _arrow3723(__unit: None=None) -> str | None:
|
|
268
|
+
object_arg_5: IOptionalGetter = get.Optional
|
|
269
|
+
return object_arg_5.Field("Version", string)
|
|
270
|
+
|
|
271
|
+
def _arrow3724(__unit: None=None) -> Array[str] | None:
|
|
272
|
+
arg_13: Decoder_1[Array[str]] = resize_array(string)
|
|
273
|
+
object_arg_6: IOptionalGetter = get.Optional
|
|
274
|
+
return object_arg_6.Field("SubWorkflowIdentifiers", arg_13)
|
|
275
|
+
|
|
276
|
+
def _arrow3725(__unit: None=None) -> Array[OntologyAnnotation] | None:
|
|
277
|
+
arg_15: Decoder_1[Array[OntologyAnnotation]] = resize_array(OntologyAnnotation_decoder)
|
|
278
|
+
object_arg_7: IOptionalGetter = get.Optional
|
|
279
|
+
return object_arg_7.Field("Parameters", arg_15)
|
|
280
|
+
|
|
281
|
+
def _arrow3726(__unit: None=None) -> Array[Component] | None:
|
|
282
|
+
arg_17: Decoder_1[Array[Component]] = resize_array(decoder_1)
|
|
283
|
+
object_arg_8: IOptionalGetter = get.Optional
|
|
284
|
+
return object_arg_8.Field("Components", arg_17)
|
|
285
|
+
|
|
286
|
+
def _arrow3727(__unit: None=None) -> Datamap | None:
|
|
287
|
+
arg_19: Decoder_1[Datamap] = decoder_compressed_1(string_table, oa_table, cell_table)
|
|
288
|
+
object_arg_9: IOptionalGetter = get.Optional
|
|
289
|
+
return object_arg_9.Field("Datamap", arg_19)
|
|
290
|
+
|
|
291
|
+
def _arrow3728(__unit: None=None) -> Array[Person] | None:
|
|
292
|
+
arg_21: Decoder_1[Array[Person]] = resize_array(decoder_3)
|
|
293
|
+
object_arg_10: IOptionalGetter = get.Optional
|
|
294
|
+
return object_arg_10.Field("Contacts", arg_21)
|
|
295
|
+
|
|
296
|
+
def _arrow3729(__unit: None=None) -> Array[Comment] | None:
|
|
297
|
+
arg_23: Decoder_1[Array[Comment]] = resize_array(decoder_4)
|
|
298
|
+
object_arg_11: IOptionalGetter = get.Optional
|
|
299
|
+
return object_arg_11.Field("Comments", arg_23)
|
|
300
|
+
|
|
301
|
+
return ArcWorkflow.create(_arrow3718(), _arrow3719(), _arrow3720(), _arrow3721(), _arrow3722(), _arrow3723(), _arrow3724(), _arrow3725(), _arrow3726(), _arrow3727(), _arrow3728(), None, _arrow3729())
|
|
302
|
+
|
|
303
|
+
return object(_arrow3730)
|
|
304
|
+
|
|
305
|
+
|
|
306
|
+
__all__ = ["encoder", "decoder", "encoder_compressed", "decoder_compressed"]
|
|
307
|
+
|
|
File without changes
|
|
@@ -0,0 +1,60 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ...Core.Process.component import Component
|
|
5
|
+
from ...Json.encode import default_spaces
|
|
6
|
+
from ...Json.Process.component import (ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder)
|
|
7
|
+
from ...fable_modules.fable_library.option import default_arg
|
|
8
|
+
from ...fable_modules.fable_library.result import FSharpResult_2
|
|
9
|
+
from ...fable_modules.fable_library.string_ import (to_text, printf)
|
|
10
|
+
from ...fable_modules.thoth_json_core.types import IEncodable
|
|
11
|
+
from ...fable_modules.thoth_json_python.decode import Decode_fromString
|
|
12
|
+
from ...fable_modules.thoth_json_python.encode import to_string
|
|
13
|
+
|
|
14
|
+
def ARCtrl_Process_Component__Component_fromISAJsonString_Static_Z721C83C5(s: str) -> Component:
|
|
15
|
+
match_value: FSharpResult_2[Component, str] = Decode_fromString(ISAJson_decoder, s)
|
|
16
|
+
if match_value.tag == 1:
|
|
17
|
+
raise Exception(to_text(printf("Error decoding string: %O"))(match_value.fields[0]))
|
|
18
|
+
|
|
19
|
+
else:
|
|
20
|
+
return match_value.fields[0]
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
|
|
24
|
+
def ARCtrl_Process_Component__Component_toISAJsonString_Static_Z3B036AA(spaces: int | None=None, use_idreferencing: bool | None=None) -> Callable[[Component], str]:
|
|
25
|
+
id_map: Any | None = dict([]) if default_arg(use_idreferencing, False) else None
|
|
26
|
+
def _arrow4225(f: Component, spaces: Any=spaces, use_idreferencing: Any=use_idreferencing) -> str:
|
|
27
|
+
value: IEncodable = ISAJson_encoder(id_map, f)
|
|
28
|
+
return to_string(default_spaces(spaces), value)
|
|
29
|
+
|
|
30
|
+
return _arrow4225
|
|
31
|
+
|
|
32
|
+
|
|
33
|
+
def ARCtrl_Process_Component__Component_toISAJsonString_71136F3F(this: Component, spaces: int | None=None) -> str:
|
|
34
|
+
return ARCtrl_Process_Component__Component_toISAJsonString_Static_Z3B036AA(spaces)(this)
|
|
35
|
+
|
|
36
|
+
|
|
37
|
+
def ARCtrl_Process_Component__Component_fromROCrateJsonString_Static_Z721C83C5(s: str) -> Component:
|
|
38
|
+
match_value: FSharpResult_2[Component, str] = Decode_fromString(ROCrate_decoder, s)
|
|
39
|
+
if match_value.tag == 1:
|
|
40
|
+
raise Exception(to_text(printf("Error decoding string: %O"))(match_value.fields[0]))
|
|
41
|
+
|
|
42
|
+
else:
|
|
43
|
+
return match_value.fields[0]
|
|
44
|
+
|
|
45
|
+
|
|
46
|
+
|
|
47
|
+
def ARCtrl_Process_Component__Component_toROCrateJsonString_Static_71136F3F(spaces: int | None=None) -> Callable[[Component], str]:
|
|
48
|
+
def _arrow4226(f: Component, spaces: Any=spaces) -> str:
|
|
49
|
+
value: IEncodable = ROCrate_encoder(f)
|
|
50
|
+
return to_string(default_spaces(spaces), value)
|
|
51
|
+
|
|
52
|
+
return _arrow4226
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
def ARCtrl_Process_Component__Component_toROCrateJsonString_71136F3F(this: Component, spaces: int | None=None) -> str:
|
|
56
|
+
return ARCtrl_Process_Component__Component_toROCrateJsonString_Static_71136F3F(spaces)(this)
|
|
57
|
+
|
|
58
|
+
|
|
59
|
+
__all__ = ["ARCtrl_Process_Component__Component_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_Component__Component_toISAJsonString_Static_Z3B036AA", "ARCtrl_Process_Component__Component_toISAJsonString_71136F3F", "ARCtrl_Process_Component__Component_fromROCrateJsonString_Static_Z721C83C5", "ARCtrl_Process_Component__Component_toROCrateJsonString_Static_71136F3F", "ARCtrl_Process_Component__Component_toROCrateJsonString_71136F3F"]
|
|
60
|
+
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ...Core.Process.factor import Factor
|
|
5
|
+
from ...Json.encode import default_spaces
|
|
6
|
+
from ...Json.Process.factor import (decoder as decoder_1, encoder)
|
|
7
|
+
from ...fable_modules.fable_library.result import FSharpResult_2
|
|
8
|
+
from ...fable_modules.fable_library.string_ import (to_text, printf)
|
|
9
|
+
from ...fable_modules.thoth_json_core.types import IEncodable
|
|
10
|
+
from ...fable_modules.thoth_json_python.decode import Decode_fromString
|
|
11
|
+
from ...fable_modules.thoth_json_python.encode import to_string
|
|
12
|
+
|
|
13
|
+
def ARCtrl_Process_Factor__Factor_fromISAJsonString_Static_Z721C83C5(s: str) -> Factor:
|
|
14
|
+
match_value: FSharpResult_2[Factor, str] = Decode_fromString(decoder_1, s)
|
|
15
|
+
if match_value.tag == 1:
|
|
16
|
+
raise Exception(to_text(printf("Error decoding string: %O"))(match_value.fields[0]))
|
|
17
|
+
|
|
18
|
+
else:
|
|
19
|
+
return match_value.fields[0]
|
|
20
|
+
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
def ARCtrl_Process_Factor__Factor_toISAJsonString_Static_71136F3F(spaces: int | None=None) -> Callable[[Factor], str]:
|
|
24
|
+
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__all__ = ["ARCtrl_Process_Factor__Factor_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_Factor__Factor_toISAJsonString_Static_71136F3F", "ARCtrl_Process_Factor__Factor_ToISAJsonString_71136F3F"]
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__all__ = ["ARCtrl_Process_FactorValue__FactorValue_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_FactorValue__FactorValue_toISAJsonString_Static_Z3B036AA", "ARCtrl_Process_FactorValue__FactorValue_ToISAJsonString_Z3B036AA"]
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from ...Core.Process.material import Material
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from ...Json.Process.material import (ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder)
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def ARCtrl_Process_Material__Material_fromISAJsonString_Static_Z721C83C5(s: str) -> Material:
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def ARCtrl_Process_Material__Material_toISAJsonString_Static_Z3B036AA(spaces: int | None=None, use_idreferencing: bool | None=None) -> Callable[[Material], str]:
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def ARCtrl_Process_Material__Material_ToISAJsonString_Z3B036AA(this: Material, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
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def ARCtrl_Process_Material__Material_fromROCrateJsonString_Static_Z721C83C5(s: str) -> Material:
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match_value: FSharpResult_2[Material, str] = Decode_fromString(ROCrate_decoder, s)
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def ARCtrl_Process_Material__Material_toROCrateJsonString_Static_71136F3F(spaces: int | None=None) -> Callable[[Material], str]:
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def _arrow4232(f: Material, spaces: Any=spaces) -> str:
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def ARCtrl_Process_Material__Material_ToROCrateJsonString_71136F3F(this: Material, spaces: int | None=None) -> str:
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__all__ = ["ARCtrl_Process_Material__Material_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_Material__Material_toISAJsonString_Static_Z3B036AA", "ARCtrl_Process_Material__Material_ToISAJsonString_Z3B036AA", "ARCtrl_Process_Material__Material_fromROCrateJsonString_Static_Z721C83C5", "ARCtrl_Process_Material__Material_toROCrateJsonString_Static_71136F3F", "ARCtrl_Process_Material__Material_ToROCrateJsonString_71136F3F"]
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from typing import Any
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from ...Core.Process.material_attribute import MaterialAttribute
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from ...Json.encode import default_spaces
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from ...Json.Process.material_attribute import (decoder as decoder_1, encoder)
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from ...fable_modules.fable_library.result import FSharpResult_2
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from ...fable_modules.fable_library.string_ import (to_text, printf)
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from ...fable_modules.thoth_json_core.types import IEncodable
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from ...fable_modules.thoth_json_python.decode import Decode_fromString
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def ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromISAJsonString_Static_Z721C83C5(s: str) -> MaterialAttribute:
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match_value: FSharpResult_2[MaterialAttribute, str] = Decode_fromString(decoder_1, s)
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if match_value.tag == 1:
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else:
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def ARCtrl_Process_MaterialAttribute__MaterialAttribute_toISAJsonString_Static_Z3B036AA(spaces: int | None=None, use_idreferencing: bool | None=None) -> Callable[[MaterialAttribute], str]:
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def _arrow4224(v: MaterialAttribute, spaces: Any=spaces, use_idreferencing: Any=use_idreferencing) -> str:
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value: IEncodable = encoder(id_map, v)
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|
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return _arrow4224
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def ARCtrl_Process_MaterialAttribute__MaterialAttribute_ToJsonString_Z3B036AA(this: MaterialAttribute, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
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return ARCtrl_Process_MaterialAttribute__MaterialAttribute_toISAJsonString_Static_Z3B036AA(spaces, use_idreferencing)(this)
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__all__ = ["ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_toISAJsonString_Static_Z3B036AA", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_ToJsonString_Z3B036AA"]
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from __future__ import annotations
|
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|
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from collections.abc import Callable
|
|
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|
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from typing import Any
|
|
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|
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from ...Core.Process.material_attribute_value import MaterialAttributeValue
|
|
5
|
+
from ...Json.encode import default_spaces
|
|
6
|
+
from ...Json.Process.material_attribute_value import (ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder)
|
|
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|
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from ...fable_modules.fable_library.option import default_arg
|
|
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|
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from ...fable_modules.fable_library.result import FSharpResult_2
|
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|
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from ...fable_modules.fable_library.string_ import (to_text, printf)
|
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from ...fable_modules.thoth_json_core.types import IEncodable
|
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|
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from ...fable_modules.thoth_json_python.decode import Decode_fromString
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from ...fable_modules.thoth_json_python.encode import to_string
|
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def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_fromISAJsonString_Static_Z721C83C5(s: str) -> MaterialAttributeValue:
|
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|
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match_value: FSharpResult_2[MaterialAttributeValue, str] = Decode_fromString(ISAJson_decoder, s)
|
|
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|
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if match_value.tag == 1:
|
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raise Exception(to_text(printf("Error decoding string: %O"))(match_value.fields[0]))
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else:
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def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toISAJsonString_Static_Z3B036AA(spaces: int | None=None, use_idreferencing: bool | None=None) -> Callable[[MaterialAttributeValue], str]:
|
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|
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id_map: Any | None = dict([]) if default_arg(use_idreferencing, False) else None
|
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|
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def _arrow4229(f: MaterialAttributeValue, spaces: Any=spaces, use_idreferencing: Any=use_idreferencing) -> str:
|
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value: IEncodable = ISAJson_encoder(id_map, f)
|
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|
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return _arrow4229
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def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_ToISAJsonString_Z3B036AA(this: MaterialAttributeValue, spaces: int | None=None, use_idreferencing: bool | None=None) -> str:
|
|
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|
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return ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toISAJsonString_Static_Z3B036AA(spaces, use_idreferencing)(this)
|
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def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_fromROCrateJsonString_Static_Z721C83C5(s: str) -> MaterialAttributeValue:
|
|
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|
+
match_value: FSharpResult_2[MaterialAttributeValue, str] = Decode_fromString(ROCrate_decoder, s)
|
|
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|
+
if match_value.tag == 1:
|
|
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|
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raise Exception(to_text(printf("Error decoding string: %O"))(match_value.fields[0]))
|
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|
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else:
|
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def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toROCrateJsonString_Static_71136F3F(spaces: int | None=None) -> Callable[[MaterialAttributeValue], str]:
|
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|
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def _arrow4230(f: MaterialAttributeValue, spaces: Any=spaces) -> str:
|
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value: IEncodable = ROCrate_encoder(f)
|
|
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|
+
return to_string(default_spaces(spaces), value)
|
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|
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|
+
return _arrow4230
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|
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def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_ToROCrateJsonString_71136F3F(this: MaterialAttributeValue, spaces: int | None=None) -> str:
|
|
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|
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return ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toROCrateJsonString_Static_71136F3F(spaces)(this)
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__all__ = ["ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toISAJsonString_Static_Z3B036AA", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_ToISAJsonString_Z3B036AA", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_fromROCrateJsonString_Static_Z721C83C5", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toROCrateJsonString_Static_71136F3F", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_ToROCrateJsonString_71136F3F"]
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|
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from __future__ import annotations
|
|
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|
+
from collections.abc import Callable
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ...Core.Process.material_type import MaterialType
|
|
5
|
+
from ...Json.encode import default_spaces
|
|
6
|
+
from ...Json.Process.material_type import (ISAJson_decoder, ISAJson_encoder)
|
|
7
|
+
from ...fable_modules.fable_library.result import FSharpResult_2
|
|
8
|
+
from ...fable_modules.fable_library.string_ import (to_text, printf)
|
|
9
|
+
from ...fable_modules.thoth_json_core.types import IEncodable
|
|
10
|
+
from ...fable_modules.thoth_json_python.decode import Decode_fromString
|
|
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|
+
from ...fable_modules.thoth_json_python.encode import to_string
|
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|
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|
|
13
|
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def ARCtrl_Process_MaterialType__MaterialType_fromISAJsonString_Static_Z721C83C5(s: str) -> MaterialType:
|
|
14
|
+
match_value: FSharpResult_2[MaterialType, str] = Decode_fromString(ISAJson_decoder, s)
|
|
15
|
+
if match_value.tag == 1:
|
|
16
|
+
raise Exception(to_text(printf("Error decoding string: %O"))(match_value.fields[0]))
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|
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|
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else:
|
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|
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return match_value.fields[0]
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|
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def ARCtrl_Process_MaterialType__MaterialType_toISAJsonString_Static_71136F3F(spaces: int | None=None) -> Callable[[MaterialType], str]:
|
|
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|
+
def _arrow4223(f: MaterialType, spaces: Any=spaces) -> str:
|
|
25
|
+
value: IEncodable = ISAJson_encoder(f)
|
|
26
|
+
return to_string(default_spaces(spaces), value)
|
|
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|
+
|
|
28
|
+
return _arrow4223
|
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29
|
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|
|
30
|
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|
|
31
|
+
def ARCtrl_Process_MaterialType__MaterialType_ToISAJsonString_71136F3F(this: MaterialType, spaces: int | None=None) -> str:
|
|
32
|
+
return ARCtrl_Process_MaterialType__MaterialType_toISAJsonString_Static_71136F3F(spaces)(this)
|
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|
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|
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|
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|
+
__all__ = ["ARCtrl_Process_MaterialType__MaterialType_fromISAJsonString_Static_Z721C83C5", "ARCtrl_Process_MaterialType__MaterialType_toISAJsonString_Static_71136F3F", "ARCtrl_Process_MaterialType__MaterialType_ToISAJsonString_71136F3F"]
|
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36
|
+
|