arctrl 3.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +23 -0
- arctrl/cwl.py +12 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwlprocessing_unit.py +221 -0
- arctrl/py/CWL/cwltypes.py +364 -0
- arctrl/py/CWL/decode.py +3532 -0
- arctrl/py/CWL/encode.py +1905 -0
- arctrl/py/CWL/expression_tool_description.py +192 -0
- arctrl/py/CWL/hash_helpers.py +60 -0
- arctrl/py/CWL/inputs.py +122 -0
- arctrl/py/CWL/operation_description.py +169 -0
- arctrl/py/CWL/outputs.py +171 -0
- arctrl/py/CWL/parameter_reference.py +74 -0
- arctrl/py/CWL/requirements.py +350 -0
- arctrl/py/CWL/tool_description.py +192 -0
- arctrl/py/CWL/workflow_description.py +181 -0
- arctrl/py/CWL/workflow_steps.py +354 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +89 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +291 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +213 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +396 -0
- arctrl/py/Contract/git.py +116 -0
- arctrl/py/Contract/license.py +58 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +350 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Conversion/__init__.py +0 -0
- arctrl/py/Conversion/assay.py +151 -0
- arctrl/py/Conversion/basic.py +559 -0
- arctrl/py/Conversion/column_index.py +91 -0
- arctrl/py/Conversion/datamap.py +36 -0
- arctrl/py/Conversion/date_time.py +32 -0
- arctrl/py/Conversion/investigation.py +171 -0
- arctrl/py/Conversion/person.py +148 -0
- arctrl/py/Conversion/process.py +828 -0
- arctrl/py/Conversion/run.py +367 -0
- arctrl/py/Conversion/scholarly_article.py +163 -0
- arctrl/py/Conversion/study.py +99 -0
- arctrl/py/Conversion/table.py +229 -0
- arctrl/py/Conversion/workflow.py +680 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +512 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +290 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1206 -0
- arctrl/py/Core/Table/arc_table_aux.py +1308 -0
- arctrl/py/Core/Table/arc_tables.py +574 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5312 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1375 -0
- arctrl/py/Core/data.py +247 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/datamap.py +217 -0
- arctrl/py/Core/identifier_setters.py +43 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +298 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +1 -0
- arctrl/py/FileSystem/default_gitignore.py +1 -0
- arctrl/py/FileSystem/default_license.py +1 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +483 -0
- arctrl/py/FileSystem/path.py +266 -0
- arctrl/py/Json/Datamap/__init__.py +0 -0
- arctrl/py/Json/Datamap/data_context.py +101 -0
- arctrl/py/Json/Datamap/datamap.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +125 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +91 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +143 -0
- arctrl/py/Json/ROCrate/ldgraph.py +117 -0
- arctrl/py/Json/ROCrate/ldnode.py +304 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +375 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +271 -0
- arctrl/py/Json/encode.py +140 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/run.py +275 -0
- arctrl/py/Json/string_table.py +87 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/Json/workflow.py +307 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +103 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +67 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/datamap.py +36 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +91 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/run.py +68 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/JsonIO/workflow.py +68 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
- arctrl/py/ROCrate/LDTypes/comment.py +131 -0
- arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
- arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
- arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
- arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
- arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
- arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
- arctrl/py/ROCrate/LDTypes/file.py +281 -0
- arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
- arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
- arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
- arctrl/py/ROCrate/LDTypes/organization.py +83 -0
- arctrl/py/ROCrate/LDTypes/person.py +484 -0
- arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
- arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
- arctrl/py/ROCrate/LDTypes/sample.py +202 -0
- arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
- arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
- arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
- arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +406 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
- arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +435 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +177 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/datamap.py +43 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/WorkflowGraph/__init__.py +0 -0
- arctrl/py/WorkflowGraph/adapters.py +141 -0
- arctrl/py/WorkflowGraph/build_options.py +45 -0
- arctrl/py/WorkflowGraph/builder.py +720 -0
- arctrl/py/WorkflowGraph/graph_types.py +260 -0
- arctrl/py/WorkflowGraph/query_helpers.py +76 -0
- arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
- arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
- arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1891 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +142 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/cwlrun_resolver.py +228 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
- arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/siren/__init__.py +0 -0
- arctrl/py/fable_modules/siren/config.py +1038 -0
- arctrl/py/fable_modules/siren/formatting.py +1121 -0
- arctrl/py/fable_modules/siren/siren.py +1941 -0
- arctrl/py/fable_modules/siren/siren_types.py +1229 -0
- arctrl/py/fable_modules/siren/theme_variables.py +517 -0
- arctrl/py/fable_modules/siren/util.py +37 -0
- arctrl/py/fable_modules/siren/yaml.py +101 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +739 -0
- arctrl/py/fable_modules/yamlicious/regex.py +29 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +389 -0
- arctrl/py/license.py +169 -0
- arctrl/py/rocrate_io.py +242 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +212 -0
- arctrl/py/yaml.py +79 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0.dist-info/METADATA +157 -0
- arctrl-3.0.0.dist-info/RECORD +511 -0
- arctrl-3.0.0.dist-info/WHEEL +4 -0
- arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
|
@@ -0,0 +1,621 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ...fable_modules.fable_library.list import (map, FSharpList, item, is_empty, head, tail, try_find_index)
|
|
5
|
+
from ...fable_modules.fable_library.option import map as map_1
|
|
6
|
+
from ...fable_modules.fable_library.seq import (to_list, delay, append, map as map_2)
|
|
7
|
+
from ...fable_modules.fable_library.string_ import (starts_with_exact, join, to_fail, printf)
|
|
8
|
+
from ...fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
|
|
9
|
+
from ...fable_modules.fs_spreadsheet.Cells.fs_cell import FsCell
|
|
10
|
+
from ...Core.comment import Comment
|
|
11
|
+
from ...Core.data import Data
|
|
12
|
+
from ...Core.data_context import (DataContext__set_Explication_279AAFF2, DataContext, DataContext__set_Unit_279AAFF2, DataContext__set_ObjectType_279AAFF2, DataContext__set_Description_6DFDD678, DataContext__set_GeneratedBy_6DFDD678, DataContext__set_Label_6DFDD678)
|
|
13
|
+
from ...Core.Helper.collections_ import Option_fromValueWithDefault
|
|
14
|
+
from ...Core.Helper.regex import ActivePatterns__007CComment_007C__007C
|
|
15
|
+
from ...Core.ontology_annotation import OntologyAnnotation
|
|
16
|
+
|
|
17
|
+
def ActivePattern_ontologyAnnotationFromFsCells(tsr_col: int | None, tan_col: int | None, cells: FSharpList[FsCell]) -> OntologyAnnotation:
|
|
18
|
+
def mapping(c: FsCell, tsr_col: Any=tsr_col, tan_col: Any=tan_col, cells: Any=cells) -> str:
|
|
19
|
+
return c.ValueAsString()
|
|
20
|
+
|
|
21
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
22
|
+
def _arrow1962(i: int, tsr_col: Any=tsr_col, tan_col: Any=tan_col, cells: Any=cells) -> str:
|
|
23
|
+
return item(i, cell_values)
|
|
24
|
+
|
|
25
|
+
tsr: str | None = map_1(_arrow1962, tsr_col)
|
|
26
|
+
def _arrow1963(i_1: int, tsr_col: Any=tsr_col, tan_col: Any=tan_col, cells: Any=cells) -> str:
|
|
27
|
+
return item(i_1, cell_values)
|
|
28
|
+
|
|
29
|
+
tan: str | None = map_1(_arrow1963, tan_col)
|
|
30
|
+
return OntologyAnnotation(item(0, cell_values), tsr, tan)
|
|
31
|
+
|
|
32
|
+
|
|
33
|
+
def ActivePattern_freeTextFromFsCells(cells: FSharpList[FsCell]) -> str:
|
|
34
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
35
|
+
return c.ValueAsString()
|
|
36
|
+
|
|
37
|
+
return item(0, map(mapping, cells))
|
|
38
|
+
|
|
39
|
+
|
|
40
|
+
def ActivePattern_dataFromFsCells(format: int | None, selector_format: int | None, cells: FSharpList[FsCell]) -> Data:
|
|
41
|
+
def mapping(c: FsCell, format: Any=format, selector_format: Any=selector_format, cells: Any=cells) -> str:
|
|
42
|
+
return c.ValueAsString()
|
|
43
|
+
|
|
44
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
45
|
+
def _arrow1964(i: int, format: Any=format, selector_format: Any=selector_format, cells: Any=cells) -> str:
|
|
46
|
+
return item(i, cell_values)
|
|
47
|
+
|
|
48
|
+
format_1: str | None = map_1(_arrow1964, format)
|
|
49
|
+
def _arrow1965(i_1: int, format: Any=format, selector_format: Any=selector_format, cells: Any=cells) -> str:
|
|
50
|
+
return item(i_1, cell_values)
|
|
51
|
+
|
|
52
|
+
selector_format_1: str | None = map_1(_arrow1965, selector_format)
|
|
53
|
+
return Data(None, item(0, cell_values), None, format_1, selector_format_1)
|
|
54
|
+
|
|
55
|
+
|
|
56
|
+
def ActivePattern__007CTerm_007C__007C(category_string: str, cells: FSharpList[FsCell]) -> Callable[[FSharpList[FsCell]], OntologyAnnotation] | None:
|
|
57
|
+
def _007CAC_007C__007C(s: str, category_string: Any=category_string, cells: Any=cells) -> int | None:
|
|
58
|
+
if s == category_string:
|
|
59
|
+
return 1
|
|
60
|
+
|
|
61
|
+
else:
|
|
62
|
+
return None
|
|
63
|
+
|
|
64
|
+
|
|
65
|
+
def _007CTSRColumnHeaderRaw_007C__007C(s_1: str, category_string: Any=category_string, cells: Any=cells) -> str | None:
|
|
66
|
+
if starts_with_exact(s_1, "Term Source REF"):
|
|
67
|
+
return s_1
|
|
68
|
+
|
|
69
|
+
else:
|
|
70
|
+
return None
|
|
71
|
+
|
|
72
|
+
|
|
73
|
+
def _007CTANColumnHeaderRaw_007C__007C(s_2: str, category_string: Any=category_string, cells: Any=cells) -> str | None:
|
|
74
|
+
if starts_with_exact(s_2, "Term Accession Number"):
|
|
75
|
+
return s_2
|
|
76
|
+
|
|
77
|
+
else:
|
|
78
|
+
return None
|
|
79
|
+
|
|
80
|
+
|
|
81
|
+
def mapping(c: FsCell, category_string: Any=category_string, cells: Any=cells) -> str:
|
|
82
|
+
return c.ValueAsString()
|
|
83
|
+
|
|
84
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
85
|
+
(pattern_matching_result,) = (None,)
|
|
86
|
+
if not is_empty(cell_values):
|
|
87
|
+
active_pattern_result: int | None = _007CAC_007C__007C(head(cell_values))
|
|
88
|
+
if active_pattern_result is not None:
|
|
89
|
+
if is_empty(tail(cell_values)):
|
|
90
|
+
pattern_matching_result = 0
|
|
91
|
+
|
|
92
|
+
else:
|
|
93
|
+
pattern_matching_result = 1
|
|
94
|
+
|
|
95
|
+
|
|
96
|
+
else:
|
|
97
|
+
pattern_matching_result = 1
|
|
98
|
+
|
|
99
|
+
|
|
100
|
+
else:
|
|
101
|
+
pattern_matching_result = 1
|
|
102
|
+
|
|
103
|
+
if pattern_matching_result == 0:
|
|
104
|
+
def Value(cells_1: FSharpList[FsCell], category_string: Any=category_string, cells: Any=cells) -> OntologyAnnotation:
|
|
105
|
+
return ActivePattern_ontologyAnnotationFromFsCells(None, None, cells_1)
|
|
106
|
+
|
|
107
|
+
return Value
|
|
108
|
+
|
|
109
|
+
elif pattern_matching_result == 1:
|
|
110
|
+
(pattern_matching_result_1,) = (None,)
|
|
111
|
+
if not is_empty(cell_values):
|
|
112
|
+
active_pattern_result_1: int | None = _007CAC_007C__007C(head(cell_values))
|
|
113
|
+
if active_pattern_result_1 is not None:
|
|
114
|
+
if not is_empty(tail(cell_values)):
|
|
115
|
+
if _007CTSRColumnHeaderRaw_007C__007C(head(tail(cell_values))) is not None:
|
|
116
|
+
if not is_empty(tail(tail(cell_values))):
|
|
117
|
+
if _007CTANColumnHeaderRaw_007C__007C(head(tail(tail(cell_values)))) is not None:
|
|
118
|
+
if is_empty(tail(tail(tail(cell_values)))):
|
|
119
|
+
pattern_matching_result_1 = 0
|
|
120
|
+
|
|
121
|
+
else:
|
|
122
|
+
pattern_matching_result_1 = 1
|
|
123
|
+
|
|
124
|
+
|
|
125
|
+
else:
|
|
126
|
+
pattern_matching_result_1 = 1
|
|
127
|
+
|
|
128
|
+
|
|
129
|
+
else:
|
|
130
|
+
pattern_matching_result_1 = 1
|
|
131
|
+
|
|
132
|
+
|
|
133
|
+
else:
|
|
134
|
+
pattern_matching_result_1 = 1
|
|
135
|
+
|
|
136
|
+
|
|
137
|
+
else:
|
|
138
|
+
pattern_matching_result_1 = 1
|
|
139
|
+
|
|
140
|
+
|
|
141
|
+
else:
|
|
142
|
+
pattern_matching_result_1 = 1
|
|
143
|
+
|
|
144
|
+
|
|
145
|
+
else:
|
|
146
|
+
pattern_matching_result_1 = 1
|
|
147
|
+
|
|
148
|
+
if pattern_matching_result_1 == 0:
|
|
149
|
+
def Value_1(cells_2: FSharpList[FsCell], category_string: Any=category_string, cells: Any=cells) -> OntologyAnnotation:
|
|
150
|
+
return ActivePattern_ontologyAnnotationFromFsCells(1, 2, cells_2)
|
|
151
|
+
|
|
152
|
+
return Value_1
|
|
153
|
+
|
|
154
|
+
elif pattern_matching_result_1 == 1:
|
|
155
|
+
(pattern_matching_result_2,) = (None,)
|
|
156
|
+
if not is_empty(cell_values):
|
|
157
|
+
active_pattern_result_4: int | None = _007CAC_007C__007C(head(cell_values))
|
|
158
|
+
if active_pattern_result_4 is not None:
|
|
159
|
+
if not is_empty(tail(cell_values)):
|
|
160
|
+
if _007CTANColumnHeaderRaw_007C__007C(head(tail(cell_values))) is not None:
|
|
161
|
+
if not is_empty(tail(tail(cell_values))):
|
|
162
|
+
if _007CTSRColumnHeaderRaw_007C__007C(head(tail(tail(cell_values)))) is not None:
|
|
163
|
+
if is_empty(tail(tail(tail(cell_values)))):
|
|
164
|
+
pattern_matching_result_2 = 0
|
|
165
|
+
|
|
166
|
+
else:
|
|
167
|
+
pattern_matching_result_2 = 1
|
|
168
|
+
|
|
169
|
+
|
|
170
|
+
else:
|
|
171
|
+
pattern_matching_result_2 = 1
|
|
172
|
+
|
|
173
|
+
|
|
174
|
+
else:
|
|
175
|
+
pattern_matching_result_2 = 1
|
|
176
|
+
|
|
177
|
+
|
|
178
|
+
else:
|
|
179
|
+
pattern_matching_result_2 = 1
|
|
180
|
+
|
|
181
|
+
|
|
182
|
+
else:
|
|
183
|
+
pattern_matching_result_2 = 1
|
|
184
|
+
|
|
185
|
+
|
|
186
|
+
else:
|
|
187
|
+
pattern_matching_result_2 = 1
|
|
188
|
+
|
|
189
|
+
|
|
190
|
+
else:
|
|
191
|
+
pattern_matching_result_2 = 1
|
|
192
|
+
|
|
193
|
+
if pattern_matching_result_2 == 0:
|
|
194
|
+
def Value_2(cells_3: FSharpList[FsCell], category_string: Any=category_string, cells: Any=cells) -> OntologyAnnotation:
|
|
195
|
+
return ActivePattern_ontologyAnnotationFromFsCells(2, 1, cells_3)
|
|
196
|
+
|
|
197
|
+
return Value_2
|
|
198
|
+
|
|
199
|
+
elif pattern_matching_result_2 == 1:
|
|
200
|
+
return None
|
|
201
|
+
|
|
202
|
+
|
|
203
|
+
|
|
204
|
+
|
|
205
|
+
|
|
206
|
+
def ActivePattern__007CExplication_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
207
|
+
active_pattern_result: Callable[[FSharpList[FsCell]], OntologyAnnotation] | None = ActivePattern__007CTerm_007C__007C("Explication", cells)
|
|
208
|
+
if active_pattern_result is not None:
|
|
209
|
+
r: Callable[[FSharpList[FsCell]], OntologyAnnotation] = active_pattern_result
|
|
210
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
211
|
+
def _arrow1978(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
212
|
+
DataContext__set_Explication_279AAFF2(dc, r(cells_1))
|
|
213
|
+
return dc
|
|
214
|
+
|
|
215
|
+
return _arrow1978
|
|
216
|
+
|
|
217
|
+
return Value
|
|
218
|
+
|
|
219
|
+
else:
|
|
220
|
+
return None
|
|
221
|
+
|
|
222
|
+
|
|
223
|
+
|
|
224
|
+
def ActivePattern__007CUnit_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
225
|
+
active_pattern_result: Callable[[FSharpList[FsCell]], OntologyAnnotation] | None = ActivePattern__007CTerm_007C__007C("Unit", cells)
|
|
226
|
+
if active_pattern_result is not None:
|
|
227
|
+
r: Callable[[FSharpList[FsCell]], OntologyAnnotation] = active_pattern_result
|
|
228
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
229
|
+
def _arrow1979(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
230
|
+
DataContext__set_Unit_279AAFF2(dc, r(cells_1))
|
|
231
|
+
return dc
|
|
232
|
+
|
|
233
|
+
return _arrow1979
|
|
234
|
+
|
|
235
|
+
return Value
|
|
236
|
+
|
|
237
|
+
else:
|
|
238
|
+
return None
|
|
239
|
+
|
|
240
|
+
|
|
241
|
+
|
|
242
|
+
def ActivePattern__007CObjectType_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
243
|
+
active_pattern_result: Callable[[FSharpList[FsCell]], OntologyAnnotation] | None = ActivePattern__007CTerm_007C__007C("Object Type", cells)
|
|
244
|
+
if active_pattern_result is not None:
|
|
245
|
+
r: Callable[[FSharpList[FsCell]], OntologyAnnotation] = active_pattern_result
|
|
246
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
247
|
+
def _arrow1980(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
248
|
+
DataContext__set_ObjectType_279AAFF2(dc, r(cells_1))
|
|
249
|
+
return dc
|
|
250
|
+
|
|
251
|
+
return _arrow1980
|
|
252
|
+
|
|
253
|
+
return Value
|
|
254
|
+
|
|
255
|
+
else:
|
|
256
|
+
return None
|
|
257
|
+
|
|
258
|
+
|
|
259
|
+
|
|
260
|
+
def ActivePattern__007CDescription_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
261
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
262
|
+
return c.ValueAsString()
|
|
263
|
+
|
|
264
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
265
|
+
(pattern_matching_result,) = (None,)
|
|
266
|
+
if not is_empty(cell_values):
|
|
267
|
+
if head(cell_values) == "Description":
|
|
268
|
+
if is_empty(tail(cell_values)):
|
|
269
|
+
pattern_matching_result = 0
|
|
270
|
+
|
|
271
|
+
else:
|
|
272
|
+
pattern_matching_result = 1
|
|
273
|
+
|
|
274
|
+
|
|
275
|
+
else:
|
|
276
|
+
pattern_matching_result = 1
|
|
277
|
+
|
|
278
|
+
|
|
279
|
+
else:
|
|
280
|
+
pattern_matching_result = 1
|
|
281
|
+
|
|
282
|
+
if pattern_matching_result == 0:
|
|
283
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
284
|
+
def _arrow1981(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
285
|
+
DataContext__set_Description_6DFDD678(dc, Option_fromValueWithDefault("", ActivePattern_freeTextFromFsCells(cells_1)))
|
|
286
|
+
return dc
|
|
287
|
+
|
|
288
|
+
return _arrow1981
|
|
289
|
+
|
|
290
|
+
return Value
|
|
291
|
+
|
|
292
|
+
elif pattern_matching_result == 1:
|
|
293
|
+
return None
|
|
294
|
+
|
|
295
|
+
|
|
296
|
+
|
|
297
|
+
def ActivePattern__007CGeneratedBy_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
298
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
299
|
+
return c.ValueAsString()
|
|
300
|
+
|
|
301
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
302
|
+
(pattern_matching_result,) = (None,)
|
|
303
|
+
if not is_empty(cell_values):
|
|
304
|
+
if head(cell_values) == "Generated By":
|
|
305
|
+
if is_empty(tail(cell_values)):
|
|
306
|
+
pattern_matching_result = 0
|
|
307
|
+
|
|
308
|
+
else:
|
|
309
|
+
pattern_matching_result = 1
|
|
310
|
+
|
|
311
|
+
|
|
312
|
+
else:
|
|
313
|
+
pattern_matching_result = 1
|
|
314
|
+
|
|
315
|
+
|
|
316
|
+
else:
|
|
317
|
+
pattern_matching_result = 1
|
|
318
|
+
|
|
319
|
+
if pattern_matching_result == 0:
|
|
320
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
321
|
+
def _arrow1982(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
322
|
+
DataContext__set_GeneratedBy_6DFDD678(dc, Option_fromValueWithDefault("", ActivePattern_freeTextFromFsCells(cells_1)))
|
|
323
|
+
return dc
|
|
324
|
+
|
|
325
|
+
return _arrow1982
|
|
326
|
+
|
|
327
|
+
return Value
|
|
328
|
+
|
|
329
|
+
elif pattern_matching_result == 1:
|
|
330
|
+
return None
|
|
331
|
+
|
|
332
|
+
|
|
333
|
+
|
|
334
|
+
def ActivePattern__007CLabel_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
335
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
336
|
+
return c.ValueAsString()
|
|
337
|
+
|
|
338
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
339
|
+
(pattern_matching_result,) = (None,)
|
|
340
|
+
if not is_empty(cell_values):
|
|
341
|
+
if head(cell_values) == "Label":
|
|
342
|
+
if is_empty(tail(cell_values)):
|
|
343
|
+
pattern_matching_result = 0
|
|
344
|
+
|
|
345
|
+
else:
|
|
346
|
+
pattern_matching_result = 1
|
|
347
|
+
|
|
348
|
+
|
|
349
|
+
else:
|
|
350
|
+
pattern_matching_result = 1
|
|
351
|
+
|
|
352
|
+
|
|
353
|
+
else:
|
|
354
|
+
pattern_matching_result = 1
|
|
355
|
+
|
|
356
|
+
if pattern_matching_result == 0:
|
|
357
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
358
|
+
def _arrow1983(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
359
|
+
DataContext__set_Label_6DFDD678(dc, Option_fromValueWithDefault("", ActivePattern_freeTextFromFsCells(cells_1)))
|
|
360
|
+
return dc
|
|
361
|
+
|
|
362
|
+
return _arrow1983
|
|
363
|
+
|
|
364
|
+
return Value
|
|
365
|
+
|
|
366
|
+
elif pattern_matching_result == 1:
|
|
367
|
+
return None
|
|
368
|
+
|
|
369
|
+
|
|
370
|
+
|
|
371
|
+
def ActivePattern__007CData_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
372
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
373
|
+
return c.ValueAsString()
|
|
374
|
+
|
|
375
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
376
|
+
(pattern_matching_result, cols) = (None, None)
|
|
377
|
+
if not is_empty(cell_values):
|
|
378
|
+
if head(cell_values) == "Data":
|
|
379
|
+
pattern_matching_result = 0
|
|
380
|
+
cols = tail(cell_values)
|
|
381
|
+
|
|
382
|
+
else:
|
|
383
|
+
pattern_matching_result = 1
|
|
384
|
+
|
|
385
|
+
|
|
386
|
+
else:
|
|
387
|
+
pattern_matching_result = 1
|
|
388
|
+
|
|
389
|
+
if pattern_matching_result == 0:
|
|
390
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
391
|
+
def _arrow1984(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
392
|
+
def mapping_1(y: int) -> int:
|
|
393
|
+
return 1 + y
|
|
394
|
+
|
|
395
|
+
def predicate(s: str) -> bool:
|
|
396
|
+
return starts_with_exact(s, "Data Format")
|
|
397
|
+
|
|
398
|
+
def mapping_2(y_1: int) -> int:
|
|
399
|
+
return 1 + y_1
|
|
400
|
+
|
|
401
|
+
def predicate_1(s_1: str) -> bool:
|
|
402
|
+
return starts_with_exact(s_1, "Data Selector Format")
|
|
403
|
+
|
|
404
|
+
d: Data = ActivePattern_dataFromFsCells(map_1(mapping_1, try_find_index(predicate, cols)), map_1(mapping_2, try_find_index(predicate_1, cols)), cells_1)
|
|
405
|
+
dc.FilePath = d.FilePath
|
|
406
|
+
dc.Selector = d.Selector
|
|
407
|
+
dc.Format = d.Format
|
|
408
|
+
dc.SelectorFormat = d.SelectorFormat
|
|
409
|
+
return dc
|
|
410
|
+
|
|
411
|
+
return _arrow1984
|
|
412
|
+
|
|
413
|
+
return Value
|
|
414
|
+
|
|
415
|
+
elif pattern_matching_result == 1:
|
|
416
|
+
return None
|
|
417
|
+
|
|
418
|
+
|
|
419
|
+
|
|
420
|
+
def ActivePattern__007CComment_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
421
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
422
|
+
return c.ValueAsString()
|
|
423
|
+
|
|
424
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
425
|
+
(pattern_matching_result, key) = (None, None)
|
|
426
|
+
if not is_empty(cell_values):
|
|
427
|
+
active_pattern_result: str | None = ActivePatterns__007CComment_007C__007C(head(cell_values))
|
|
428
|
+
if active_pattern_result is not None:
|
|
429
|
+
if is_empty(tail(cell_values)):
|
|
430
|
+
pattern_matching_result = 0
|
|
431
|
+
key = active_pattern_result
|
|
432
|
+
|
|
433
|
+
else:
|
|
434
|
+
pattern_matching_result = 1
|
|
435
|
+
|
|
436
|
+
|
|
437
|
+
else:
|
|
438
|
+
pattern_matching_result = 1
|
|
439
|
+
|
|
440
|
+
|
|
441
|
+
else:
|
|
442
|
+
pattern_matching_result = 1
|
|
443
|
+
|
|
444
|
+
if pattern_matching_result == 0:
|
|
445
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
446
|
+
def _arrow1985(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
447
|
+
def mapping_1(c_1: FsCell) -> str:
|
|
448
|
+
return c_1.ValueAsString()
|
|
449
|
+
|
|
450
|
+
comment: str = item(0, map(mapping_1, cells_1))
|
|
451
|
+
(dc.Comments.append(Comment.create(key, comment)))
|
|
452
|
+
return dc
|
|
453
|
+
|
|
454
|
+
return _arrow1985
|
|
455
|
+
|
|
456
|
+
return Value
|
|
457
|
+
|
|
458
|
+
elif pattern_matching_result == 1:
|
|
459
|
+
return None
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
|
|
463
|
+
def ActivePattern__007CFreetext_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
|
|
464
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
465
|
+
return c.ValueAsString()
|
|
466
|
+
|
|
467
|
+
cell_values: FSharpList[str] = map(mapping, cells)
|
|
468
|
+
(pattern_matching_result, key) = (None, None)
|
|
469
|
+
if not is_empty(cell_values):
|
|
470
|
+
if is_empty(tail(cell_values)):
|
|
471
|
+
pattern_matching_result = 0
|
|
472
|
+
key = head(cell_values)
|
|
473
|
+
|
|
474
|
+
else:
|
|
475
|
+
pattern_matching_result = 1
|
|
476
|
+
|
|
477
|
+
|
|
478
|
+
else:
|
|
479
|
+
pattern_matching_result = 1
|
|
480
|
+
|
|
481
|
+
if pattern_matching_result == 0:
|
|
482
|
+
def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
483
|
+
def _arrow1986(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
|
|
484
|
+
def mapping_1(c_1: FsCell) -> str:
|
|
485
|
+
return c_1.ValueAsString()
|
|
486
|
+
|
|
487
|
+
comment: str = item(0, map(mapping_1, cells_1))
|
|
488
|
+
(dc.Comments.append(Comment.create(key, comment)))
|
|
489
|
+
return dc
|
|
490
|
+
|
|
491
|
+
return _arrow1986
|
|
492
|
+
|
|
493
|
+
return Value
|
|
494
|
+
|
|
495
|
+
elif pattern_matching_result == 1:
|
|
496
|
+
return None
|
|
497
|
+
|
|
498
|
+
|
|
499
|
+
|
|
500
|
+
def from_fs_cells(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext]:
|
|
501
|
+
(pattern_matching_result, r) = (None, None)
|
|
502
|
+
active_pattern_result: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CExplication_007C__007C(cells)
|
|
503
|
+
if active_pattern_result is not None:
|
|
504
|
+
pattern_matching_result = 0
|
|
505
|
+
r = active_pattern_result
|
|
506
|
+
|
|
507
|
+
else:
|
|
508
|
+
active_pattern_result_1: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CUnit_007C__007C(cells)
|
|
509
|
+
if active_pattern_result_1 is not None:
|
|
510
|
+
pattern_matching_result = 0
|
|
511
|
+
r = active_pattern_result_1
|
|
512
|
+
|
|
513
|
+
else:
|
|
514
|
+
active_pattern_result_2: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CObjectType_007C__007C(cells)
|
|
515
|
+
if active_pattern_result_2 is not None:
|
|
516
|
+
pattern_matching_result = 0
|
|
517
|
+
r = active_pattern_result_2
|
|
518
|
+
|
|
519
|
+
else:
|
|
520
|
+
active_pattern_result_3: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CDescription_007C__007C(cells)
|
|
521
|
+
if active_pattern_result_3 is not None:
|
|
522
|
+
pattern_matching_result = 0
|
|
523
|
+
r = active_pattern_result_3
|
|
524
|
+
|
|
525
|
+
else:
|
|
526
|
+
active_pattern_result_4: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CGeneratedBy_007C__007C(cells)
|
|
527
|
+
if active_pattern_result_4 is not None:
|
|
528
|
+
pattern_matching_result = 0
|
|
529
|
+
r = active_pattern_result_4
|
|
530
|
+
|
|
531
|
+
else:
|
|
532
|
+
active_pattern_result_5: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CLabel_007C__007C(cells)
|
|
533
|
+
if active_pattern_result_5 is not None:
|
|
534
|
+
pattern_matching_result = 0
|
|
535
|
+
r = active_pattern_result_5
|
|
536
|
+
|
|
537
|
+
else:
|
|
538
|
+
active_pattern_result_6: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CData_007C__007C(cells)
|
|
539
|
+
if active_pattern_result_6 is not None:
|
|
540
|
+
pattern_matching_result = 0
|
|
541
|
+
r = active_pattern_result_6
|
|
542
|
+
|
|
543
|
+
else:
|
|
544
|
+
active_pattern_result_7: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CComment_007C__007C(cells)
|
|
545
|
+
if active_pattern_result_7 is not None:
|
|
546
|
+
pattern_matching_result = 0
|
|
547
|
+
r = active_pattern_result_7
|
|
548
|
+
|
|
549
|
+
else:
|
|
550
|
+
active_pattern_result_8: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CFreetext_007C__007C(cells)
|
|
551
|
+
if active_pattern_result_8 is not None:
|
|
552
|
+
pattern_matching_result = 0
|
|
553
|
+
r = active_pattern_result_8
|
|
554
|
+
|
|
555
|
+
else:
|
|
556
|
+
pattern_matching_result = 1
|
|
557
|
+
|
|
558
|
+
|
|
559
|
+
|
|
560
|
+
|
|
561
|
+
|
|
562
|
+
|
|
563
|
+
|
|
564
|
+
|
|
565
|
+
|
|
566
|
+
if pattern_matching_result == 0:
|
|
567
|
+
def _arrow1988(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
568
|
+
def _arrow1987(cells_1: FSharpList[FsCell]) -> DataContext:
|
|
569
|
+
return r(dc)(cells_1)
|
|
570
|
+
|
|
571
|
+
return _arrow1987
|
|
572
|
+
|
|
573
|
+
return _arrow1988
|
|
574
|
+
|
|
575
|
+
elif pattern_matching_result == 1:
|
|
576
|
+
def mapping(c: FsCell, cells: Any=cells) -> str:
|
|
577
|
+
return c.ValueAsString()
|
|
578
|
+
|
|
579
|
+
arg: str = join(", ", map(mapping, cells))
|
|
580
|
+
clo_1: Callable[[DataContext, FSharpList[FsCell]], DataContext] = to_fail(printf("Could not parse data map column: %s"))(arg)
|
|
581
|
+
def _arrow1989(arg_1: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
|
|
582
|
+
clo_2: Callable[[FSharpList[FsCell]], DataContext] = clo_1(arg_1)
|
|
583
|
+
return clo_2
|
|
584
|
+
|
|
585
|
+
return _arrow1989
|
|
586
|
+
|
|
587
|
+
|
|
588
|
+
|
|
589
|
+
def to_fs_cells(comment_keys: FSharpList[str]) -> FSharpList[FsCell]:
|
|
590
|
+
def _arrow1998(__unit: None=None, comment_keys: Any=comment_keys) -> IEnumerable_1[FsCell]:
|
|
591
|
+
def _arrow1997(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
592
|
+
def _arrow1996(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
593
|
+
def _arrow1995(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
594
|
+
def _arrow1994(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
595
|
+
def _arrow1993(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
596
|
+
def _arrow1992(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
597
|
+
def _arrow1991(__unit: None=None) -> IEnumerable_1[FsCell]:
|
|
598
|
+
def _arrow1990(ck: str) -> FsCell:
|
|
599
|
+
return FsCell(("Comment [" + ck) + "]")
|
|
600
|
+
|
|
601
|
+
return map_2(_arrow1990, comment_keys)
|
|
602
|
+
|
|
603
|
+
return append(to_enumerable([FsCell("Label")]), delay(_arrow1991))
|
|
604
|
+
|
|
605
|
+
return append(to_enumerable([FsCell("Generated By")]), delay(_arrow1992))
|
|
606
|
+
|
|
607
|
+
return append(to_enumerable([FsCell("Description")]), delay(_arrow1993))
|
|
608
|
+
|
|
609
|
+
return append(to_enumerable([FsCell("Object Type"), FsCell("Term Source REF"), FsCell("Term Accession Number")]), delay(_arrow1994))
|
|
610
|
+
|
|
611
|
+
return append(to_enumerable([FsCell("Unit"), FsCell("Term Source REF"), FsCell("Term Accession Number")]), delay(_arrow1995))
|
|
612
|
+
|
|
613
|
+
return append(to_enumerable([FsCell("Explication"), FsCell("Term Source REF"), FsCell("Term Accession Number")]), delay(_arrow1996))
|
|
614
|
+
|
|
615
|
+
return append(to_enumerable([FsCell("Data"), FsCell("Data Format"), FsCell("Data Selector Format")]), delay(_arrow1997))
|
|
616
|
+
|
|
617
|
+
return to_list(delay(_arrow1998))
|
|
618
|
+
|
|
619
|
+
|
|
620
|
+
__all__ = ["ActivePattern_ontologyAnnotationFromFsCells", "ActivePattern_freeTextFromFsCells", "ActivePattern_dataFromFsCells", "ActivePattern__007CTerm_007C__007C", "ActivePattern__007CExplication_007C__007C", "ActivePattern__007CUnit_007C__007C", "ActivePattern__007CObjectType_007C__007C", "ActivePattern__007CDescription_007C__007C", "ActivePattern__007CGeneratedBy_007C__007C", "ActivePattern__007CLabel_007C__007C", "ActivePattern__007CData_007C__007C", "ActivePattern__007CComment_007C__007C", "ActivePattern__007CFreetext_007C__007C", "from_fs_cells", "to_fs_cells"]
|
|
621
|
+
|