arctrl 3.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (511) hide show
  1. arctrl/__init__.py +23 -0
  2. arctrl/cwl.py +12 -0
  3. arctrl/py/CWL/__init__.py +0 -0
  4. arctrl/py/CWL/cwlprocessing_unit.py +221 -0
  5. arctrl/py/CWL/cwltypes.py +364 -0
  6. arctrl/py/CWL/decode.py +3532 -0
  7. arctrl/py/CWL/encode.py +1905 -0
  8. arctrl/py/CWL/expression_tool_description.py +192 -0
  9. arctrl/py/CWL/hash_helpers.py +60 -0
  10. arctrl/py/CWL/inputs.py +122 -0
  11. arctrl/py/CWL/operation_description.py +169 -0
  12. arctrl/py/CWL/outputs.py +171 -0
  13. arctrl/py/CWL/parameter_reference.py +74 -0
  14. arctrl/py/CWL/requirements.py +350 -0
  15. arctrl/py/CWL/tool_description.py +192 -0
  16. arctrl/py/CWL/workflow_description.py +181 -0
  17. arctrl/py/CWL/workflow_steps.py +354 -0
  18. arctrl/py/Contract/__init__.py +0 -0
  19. arctrl/py/Contract/arc.py +89 -0
  20. arctrl/py/Contract/arc_assay.py +125 -0
  21. arctrl/py/Contract/arc_investigation.py +88 -0
  22. arctrl/py/Contract/arc_run.py +291 -0
  23. arctrl/py/Contract/arc_study.py +126 -0
  24. arctrl/py/Contract/arc_workflow.py +213 -0
  25. arctrl/py/Contract/contract.py +153 -0
  26. arctrl/py/Contract/datamap.py +396 -0
  27. arctrl/py/Contract/git.py +116 -0
  28. arctrl/py/Contract/license.py +58 -0
  29. arctrl/py/Contract/validation_packages_config.py +107 -0
  30. arctrl/py/ContractIO/__init__.py +0 -0
  31. arctrl/py/ContractIO/contract_io.py +350 -0
  32. arctrl/py/ContractIO/file_system_helper.py +264 -0
  33. arctrl/py/Conversion/__init__.py +0 -0
  34. arctrl/py/Conversion/assay.py +151 -0
  35. arctrl/py/Conversion/basic.py +559 -0
  36. arctrl/py/Conversion/column_index.py +91 -0
  37. arctrl/py/Conversion/datamap.py +36 -0
  38. arctrl/py/Conversion/date_time.py +32 -0
  39. arctrl/py/Conversion/investigation.py +171 -0
  40. arctrl/py/Conversion/person.py +148 -0
  41. arctrl/py/Conversion/process.py +828 -0
  42. arctrl/py/Conversion/run.py +367 -0
  43. arctrl/py/Conversion/scholarly_article.py +163 -0
  44. arctrl/py/Conversion/study.py +99 -0
  45. arctrl/py/Conversion/table.py +229 -0
  46. arctrl/py/Conversion/workflow.py +680 -0
  47. arctrl/py/Core/Helper/__init__.py +0 -0
  48. arctrl/py/Core/Helper/collections_.py +512 -0
  49. arctrl/py/Core/Helper/date_time.py +26 -0
  50. arctrl/py/Core/Helper/hash_codes.py +60 -0
  51. arctrl/py/Core/Helper/identifier.py +290 -0
  52. arctrl/py/Core/Helper/orcid.py +42 -0
  53. arctrl/py/Core/Helper/printer.py +13 -0
  54. arctrl/py/Core/Helper/regex.py +554 -0
  55. arctrl/py/Core/Helper/sem_ver.py +71 -0
  56. arctrl/py/Core/Helper/url.py +148 -0
  57. arctrl/py/Core/Process/__init__.py +0 -0
  58. arctrl/py/Core/Process/column_index.py +280 -0
  59. arctrl/py/Core/Process/component.py +200 -0
  60. arctrl/py/Core/Process/factor.py +151 -0
  61. arctrl/py/Core/Process/factor_value.py +182 -0
  62. arctrl/py/Core/Process/material.py +74 -0
  63. arctrl/py/Core/Process/material_attribute.py +95 -0
  64. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  65. arctrl/py/Core/Process/material_type.py +45 -0
  66. arctrl/py/Core/Process/process.py +477 -0
  67. arctrl/py/Core/Process/process_input.py +265 -0
  68. arctrl/py/Core/Process/process_output.py +235 -0
  69. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  70. arctrl/py/Core/Process/process_sequence.py +435 -0
  71. arctrl/py/Core/Process/protocol.py +175 -0
  72. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  73. arctrl/py/Core/Process/sample.py +82 -0
  74. arctrl/py/Core/Process/source.py +62 -0
  75. arctrl/py/Core/Table/__init__.py +0 -0
  76. arctrl/py/Core/Table/arc_table.py +1206 -0
  77. arctrl/py/Core/Table/arc_table_aux.py +1308 -0
  78. arctrl/py/Core/Table/arc_tables.py +574 -0
  79. arctrl/py/Core/Table/composite_cell.py +319 -0
  80. arctrl/py/Core/Table/composite_column.py +73 -0
  81. arctrl/py/Core/Table/composite_header.py +739 -0
  82. arctrl/py/Core/__init__.py +0 -0
  83. arctrl/py/Core/arc_types.py +5312 -0
  84. arctrl/py/Core/comment.py +128 -0
  85. arctrl/py/Core/comment_list.py +127 -0
  86. arctrl/py/Core/conversion.py +1375 -0
  87. arctrl/py/Core/data.py +247 -0
  88. arctrl/py/Core/data_context.py +157 -0
  89. arctrl/py/Core/data_file.py +112 -0
  90. arctrl/py/Core/datamap.py +217 -0
  91. arctrl/py/Core/identifier_setters.py +43 -0
  92. arctrl/py/Core/iproperty_value.py +36 -0
  93. arctrl/py/Core/ontology_annotation.py +298 -0
  94. arctrl/py/Core/ontology_source_reference.py +114 -0
  95. arctrl/py/Core/person.py +259 -0
  96. arctrl/py/Core/publication.py +161 -0
  97. arctrl/py/Core/template.py +231 -0
  98. arctrl/py/Core/templates.py +148 -0
  99. arctrl/py/Core/uri.py +11 -0
  100. arctrl/py/Core/value.py +188 -0
  101. arctrl/py/FileSystem/__init__.py +0 -0
  102. arctrl/py/FileSystem/commit.py +21 -0
  103. arctrl/py/FileSystem/default_gitattributes.py +1 -0
  104. arctrl/py/FileSystem/default_gitignore.py +1 -0
  105. arctrl/py/FileSystem/default_license.py +1 -0
  106. arctrl/py/FileSystem/file_system.py +58 -0
  107. arctrl/py/FileSystem/file_system_tree.py +483 -0
  108. arctrl/py/FileSystem/path.py +266 -0
  109. arctrl/py/Json/Datamap/__init__.py +0 -0
  110. arctrl/py/Json/Datamap/data_context.py +101 -0
  111. arctrl/py/Json/Datamap/datamap.py +53 -0
  112. arctrl/py/Json/Process/__init__.py +0 -0
  113. arctrl/py/Json/Process/assay_materials.py +46 -0
  114. arctrl/py/Json/Process/component.py +125 -0
  115. arctrl/py/Json/Process/factor.py +107 -0
  116. arctrl/py/Json/Process/factor_value.py +101 -0
  117. arctrl/py/Json/Process/material.py +226 -0
  118. arctrl/py/Json/Process/material_attribute.py +79 -0
  119. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  120. arctrl/py/Json/Process/material_type.py +53 -0
  121. arctrl/py/Json/Process/process.py +296 -0
  122. arctrl/py/Json/Process/process_input.py +83 -0
  123. arctrl/py/Json/Process/process_output.py +67 -0
  124. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  125. arctrl/py/Json/Process/protocol.py +354 -0
  126. arctrl/py/Json/Process/protocol_parameter.py +91 -0
  127. arctrl/py/Json/Process/sample.py +277 -0
  128. arctrl/py/Json/Process/source.py +214 -0
  129. arctrl/py/Json/Process/study_materials.py +52 -0
  130. arctrl/py/Json/Process/value.py +56 -0
  131. arctrl/py/Json/ROCrate/__init__.py +0 -0
  132. arctrl/py/Json/ROCrate/ldcontext.py +143 -0
  133. arctrl/py/Json/ROCrate/ldgraph.py +117 -0
  134. arctrl/py/Json/ROCrate/ldnode.py +304 -0
  135. arctrl/py/Json/ROCrate/ldref.py +44 -0
  136. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  137. arctrl/py/Json/Table/__init__.py +0 -0
  138. arctrl/py/Json/Table/arc_table.py +375 -0
  139. arctrl/py/Json/Table/cell_table.py +83 -0
  140. arctrl/py/Json/Table/composite_cell.py +136 -0
  141. arctrl/py/Json/Table/composite_header.py +67 -0
  142. arctrl/py/Json/Table/iotype.py +24 -0
  143. arctrl/py/Json/Table/oatable.py +82 -0
  144. arctrl/py/Json/Table/templates.py +281 -0
  145. arctrl/py/Json/__init__.py +0 -0
  146. arctrl/py/Json/assay.py +600 -0
  147. arctrl/py/Json/comment.py +206 -0
  148. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  149. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  150. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  151. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  152. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  153. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  154. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  155. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  156. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  157. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  158. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  159. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  160. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  161. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  162. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  163. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  164. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  165. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  166. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  167. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  168. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  169. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  170. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  171. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  172. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  173. arctrl/py/Json/converter_options.py +23 -0
  174. arctrl/py/Json/data.py +356 -0
  175. arctrl/py/Json/data_file.py +63 -0
  176. arctrl/py/Json/decode.py +271 -0
  177. arctrl/py/Json/encode.py +140 -0
  178. arctrl/py/Json/idtable.py +44 -0
  179. arctrl/py/Json/investigation.py +695 -0
  180. arctrl/py/Json/ontology_annotation.py +404 -0
  181. arctrl/py/Json/ontology_source_reference.py +255 -0
  182. arctrl/py/Json/person.py +658 -0
  183. arctrl/py/Json/property_value.py +359 -0
  184. arctrl/py/Json/publication.py +279 -0
  185. arctrl/py/Json/run.py +275 -0
  186. arctrl/py/Json/string_table.py +87 -0
  187. arctrl/py/Json/study.py +793 -0
  188. arctrl/py/Json/workflow.py +307 -0
  189. arctrl/py/JsonIO/Process/__init__.py +0 -0
  190. arctrl/py/JsonIO/Process/component.py +60 -0
  191. arctrl/py/JsonIO/Process/factor.py +36 -0
  192. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  193. arctrl/py/JsonIO/Process/material.py +60 -0
  194. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  195. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  196. arctrl/py/JsonIO/Process/material_type.py +36 -0
  197. arctrl/py/JsonIO/Process/process.py +60 -0
  198. arctrl/py/JsonIO/Process/process_input.py +38 -0
  199. arctrl/py/JsonIO/Process/process_output.py +60 -0
  200. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  201. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  202. arctrl/py/JsonIO/Process/protocol.py +60 -0
  203. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  204. arctrl/py/JsonIO/Process/sample.py +60 -0
  205. arctrl/py/JsonIO/Process/source.py +60 -0
  206. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  207. arctrl/py/JsonIO/Process/value.py +32 -0
  208. arctrl/py/JsonIO/Table/__init__.py +0 -0
  209. arctrl/py/JsonIO/Table/arc_table.py +103 -0
  210. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  211. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  212. arctrl/py/JsonIO/Table/compression.py +67 -0
  213. arctrl/py/JsonIO/Table/iotype.py +36 -0
  214. arctrl/py/JsonIO/Table/templates.py +113 -0
  215. arctrl/py/JsonIO/__init__.py +0 -0
  216. arctrl/py/JsonIO/assay.py +113 -0
  217. arctrl/py/JsonIO/comment.py +80 -0
  218. arctrl/py/JsonIO/data.py +60 -0
  219. arctrl/py/JsonIO/data_file.py +58 -0
  220. arctrl/py/JsonIO/datamap.py +36 -0
  221. arctrl/py/JsonIO/decode.py +9 -0
  222. arctrl/py/JsonIO/encode.py +1 -0
  223. arctrl/py/JsonIO/investigation.py +91 -0
  224. arctrl/py/JsonIO/ldobject.py +106 -0
  225. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  226. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  227. arctrl/py/JsonIO/person.py +82 -0
  228. arctrl/py/JsonIO/publication.py +82 -0
  229. arctrl/py/JsonIO/run.py +68 -0
  230. arctrl/py/JsonIO/study.py +114 -0
  231. arctrl/py/JsonIO/workflow.py +68 -0
  232. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  233. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  234. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  235. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  236. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  237. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  238. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  239. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  240. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  241. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  242. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  243. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  244. arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
  245. arctrl/py/ROCrate/LDTypes/comment.py +131 -0
  246. arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
  247. arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
  248. arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
  249. arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
  250. arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
  251. arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
  252. arctrl/py/ROCrate/LDTypes/file.py +281 -0
  253. arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
  254. arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
  255. arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
  256. arctrl/py/ROCrate/LDTypes/organization.py +83 -0
  257. arctrl/py/ROCrate/LDTypes/person.py +484 -0
  258. arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
  259. arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
  260. arctrl/py/ROCrate/LDTypes/sample.py +202 -0
  261. arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
  262. arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
  263. arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
  264. arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
  265. arctrl/py/ROCrate/__init__.py +0 -0
  266. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  267. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  268. arctrl/py/ROCrate/helper.py +8 -0
  269. arctrl/py/ROCrate/ldcontext.py +406 -0
  270. arctrl/py/ROCrate/ldobject.py +1247 -0
  271. arctrl/py/ROCrate/rocrate_context.py +51 -0
  272. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  273. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
  274. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  275. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
  276. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  277. arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
  278. arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
  279. arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
  280. arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
  281. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  282. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  283. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  284. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  285. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  286. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  287. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  288. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  289. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  290. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  291. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  292. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  293. arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
  294. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  295. arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
  296. arctrl/py/Spreadsheet/__init__.py +0 -0
  297. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  298. arctrl/py/Spreadsheet/arc_investigation.py +435 -0
  299. arctrl/py/Spreadsheet/arc_run.py +190 -0
  300. arctrl/py/Spreadsheet/arc_study.py +144 -0
  301. arctrl/py/Spreadsheet/arc_workflow.py +177 -0
  302. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  303. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  304. arctrl/py/Spreadsheet/datamap.py +43 -0
  305. arctrl/py/Spreadsheet/template.py +460 -0
  306. arctrl/py/ValidationPackages/__init__.py +0 -0
  307. arctrl/py/ValidationPackages/validation_package.py +82 -0
  308. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  309. arctrl/py/WebRequest/__init__.py +0 -0
  310. arctrl/py/WebRequest/web_request.py +9 -0
  311. arctrl/py/WebRequest/web_request_py.py +135 -0
  312. arctrl/py/WorkflowGraph/__init__.py +0 -0
  313. arctrl/py/WorkflowGraph/adapters.py +141 -0
  314. arctrl/py/WorkflowGraph/build_options.py +45 -0
  315. arctrl/py/WorkflowGraph/builder.py +720 -0
  316. arctrl/py/WorkflowGraph/graph_types.py +260 -0
  317. arctrl/py/WorkflowGraph/query_helpers.py +76 -0
  318. arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
  319. arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
  320. arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
  321. arctrl/py/Yaml/__init__.py +0 -0
  322. arctrl/py/Yaml/decode.py +1 -0
  323. arctrl/py/Yaml/encode.py +10 -0
  324. arctrl/py/Yaml/validation_package.py +77 -0
  325. arctrl/py/Yaml/validation_packages_config.py +86 -0
  326. arctrl/py/__init__.py +0 -0
  327. arctrl/py/arc.py +1891 -0
  328. arctrl/py/column_index.py +280 -0
  329. arctrl/py/conversion.py +142 -0
  330. arctrl/py/cross_async.py +76 -0
  331. arctrl/py/cwlrun_resolver.py +228 -0
  332. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  333. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  334. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  335. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  336. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  337. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  338. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  339. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  340. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  341. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  342. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  343. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  344. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  345. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  346. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  347. arctrl/py/fable_modules/fable_library/char.py +237 -0
  348. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  349. arctrl/py/fable_modules/fable_library/date.py +779 -0
  350. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  351. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  352. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  353. arctrl/py/fable_modules/fable_library/double.py +87 -0
  354. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  355. arctrl/py/fable_modules/fable_library/event.py +206 -0
  356. arctrl/py/fable_modules/fable_library/file.py +107 -0
  357. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  358. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  359. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  360. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  361. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  362. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  363. arctrl/py/fable_modules/fable_library/long.py +240 -0
  364. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  365. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  366. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  367. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  368. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  369. arctrl/py/fable_modules/fable_library/native.py +45 -0
  370. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  371. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  372. arctrl/py/fable_modules/fable_library/option.py +128 -0
  373. arctrl/py/fable_modules/fable_library/path.py +62 -0
  374. arctrl/py/fable_modules/fable_library/range.py +117 -0
  375. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  376. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  377. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  378. arctrl/py/fable_modules/fable_library/result.py +212 -0
  379. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  380. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  381. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  382. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  383. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  384. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  385. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  386. arctrl/py/fable_modules/fable_library/task.py +116 -0
  387. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  388. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  389. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  390. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  391. arctrl/py/fable_modules/fable_library/types.py +401 -0
  392. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  393. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  394. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  395. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  396. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  397. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  398. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  399. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  400. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  401. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  402. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  403. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  404. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  405. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  406. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  407. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  408. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  409. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  410. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  411. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  412. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  413. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  414. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  415. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  416. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  417. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  418. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  419. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  420. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  421. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
  422. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
  423. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  424. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  425. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  426. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  427. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  428. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  429. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  430. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  431. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  432. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
  433. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  434. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  435. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  436. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  437. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  438. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  439. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
  440. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  441. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  442. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
  443. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  444. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
  445. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
  446. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
  447. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
  448. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  449. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  450. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
  451. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
  452. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  453. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  454. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
  455. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  456. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  457. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
  458. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
  459. arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
  460. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
  461. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  462. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
  463. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  464. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  465. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  466. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
  467. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
  468. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
  469. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  470. arctrl/py/fable_modules/siren/__init__.py +0 -0
  471. arctrl/py/fable_modules/siren/config.py +1038 -0
  472. arctrl/py/fable_modules/siren/formatting.py +1121 -0
  473. arctrl/py/fable_modules/siren/siren.py +1941 -0
  474. arctrl/py/fable_modules/siren/siren_types.py +1229 -0
  475. arctrl/py/fable_modules/siren/theme_variables.py +517 -0
  476. arctrl/py/fable_modules/siren/util.py +37 -0
  477. arctrl/py/fable_modules/siren/yaml.py +101 -0
  478. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  479. arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
  480. arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
  481. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  482. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  483. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  484. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  485. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  486. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  487. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  488. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  489. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  490. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  491. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  492. arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
  493. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  494. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  495. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  496. arctrl/py/fable_modules/yamlicious/reader.py +739 -0
  497. arctrl/py/fable_modules/yamlicious/regex.py +29 -0
  498. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
  499. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  500. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  501. arctrl/py/json.py +389 -0
  502. arctrl/py/license.py +169 -0
  503. arctrl/py/rocrate_io.py +242 -0
  504. arctrl/py/template_web.py +23 -0
  505. arctrl/py/xlsx.py +212 -0
  506. arctrl/py/yaml.py +79 -0
  507. arctrl/rocrate.py +21 -0
  508. arctrl-3.0.0.dist-info/METADATA +157 -0
  509. arctrl-3.0.0.dist-info/RECORD +511 -0
  510. arctrl-3.0.0.dist-info/WHEEL +4 -0
  511. arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
@@ -0,0 +1,621 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.fable_library.list import (map, FSharpList, item, is_empty, head, tail, try_find_index)
5
+ from ...fable_modules.fable_library.option import map as map_1
6
+ from ...fable_modules.fable_library.seq import (to_list, delay, append, map as map_2)
7
+ from ...fable_modules.fable_library.string_ import (starts_with_exact, join, to_fail, printf)
8
+ from ...fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
9
+ from ...fable_modules.fs_spreadsheet.Cells.fs_cell import FsCell
10
+ from ...Core.comment import Comment
11
+ from ...Core.data import Data
12
+ from ...Core.data_context import (DataContext__set_Explication_279AAFF2, DataContext, DataContext__set_Unit_279AAFF2, DataContext__set_ObjectType_279AAFF2, DataContext__set_Description_6DFDD678, DataContext__set_GeneratedBy_6DFDD678, DataContext__set_Label_6DFDD678)
13
+ from ...Core.Helper.collections_ import Option_fromValueWithDefault
14
+ from ...Core.Helper.regex import ActivePatterns__007CComment_007C__007C
15
+ from ...Core.ontology_annotation import OntologyAnnotation
16
+
17
+ def ActivePattern_ontologyAnnotationFromFsCells(tsr_col: int | None, tan_col: int | None, cells: FSharpList[FsCell]) -> OntologyAnnotation:
18
+ def mapping(c: FsCell, tsr_col: Any=tsr_col, tan_col: Any=tan_col, cells: Any=cells) -> str:
19
+ return c.ValueAsString()
20
+
21
+ cell_values: FSharpList[str] = map(mapping, cells)
22
+ def _arrow1962(i: int, tsr_col: Any=tsr_col, tan_col: Any=tan_col, cells: Any=cells) -> str:
23
+ return item(i, cell_values)
24
+
25
+ tsr: str | None = map_1(_arrow1962, tsr_col)
26
+ def _arrow1963(i_1: int, tsr_col: Any=tsr_col, tan_col: Any=tan_col, cells: Any=cells) -> str:
27
+ return item(i_1, cell_values)
28
+
29
+ tan: str | None = map_1(_arrow1963, tan_col)
30
+ return OntologyAnnotation(item(0, cell_values), tsr, tan)
31
+
32
+
33
+ def ActivePattern_freeTextFromFsCells(cells: FSharpList[FsCell]) -> str:
34
+ def mapping(c: FsCell, cells: Any=cells) -> str:
35
+ return c.ValueAsString()
36
+
37
+ return item(0, map(mapping, cells))
38
+
39
+
40
+ def ActivePattern_dataFromFsCells(format: int | None, selector_format: int | None, cells: FSharpList[FsCell]) -> Data:
41
+ def mapping(c: FsCell, format: Any=format, selector_format: Any=selector_format, cells: Any=cells) -> str:
42
+ return c.ValueAsString()
43
+
44
+ cell_values: FSharpList[str] = map(mapping, cells)
45
+ def _arrow1964(i: int, format: Any=format, selector_format: Any=selector_format, cells: Any=cells) -> str:
46
+ return item(i, cell_values)
47
+
48
+ format_1: str | None = map_1(_arrow1964, format)
49
+ def _arrow1965(i_1: int, format: Any=format, selector_format: Any=selector_format, cells: Any=cells) -> str:
50
+ return item(i_1, cell_values)
51
+
52
+ selector_format_1: str | None = map_1(_arrow1965, selector_format)
53
+ return Data(None, item(0, cell_values), None, format_1, selector_format_1)
54
+
55
+
56
+ def ActivePattern__007CTerm_007C__007C(category_string: str, cells: FSharpList[FsCell]) -> Callable[[FSharpList[FsCell]], OntologyAnnotation] | None:
57
+ def _007CAC_007C__007C(s: str, category_string: Any=category_string, cells: Any=cells) -> int | None:
58
+ if s == category_string:
59
+ return 1
60
+
61
+ else:
62
+ return None
63
+
64
+
65
+ def _007CTSRColumnHeaderRaw_007C__007C(s_1: str, category_string: Any=category_string, cells: Any=cells) -> str | None:
66
+ if starts_with_exact(s_1, "Term Source REF"):
67
+ return s_1
68
+
69
+ else:
70
+ return None
71
+
72
+
73
+ def _007CTANColumnHeaderRaw_007C__007C(s_2: str, category_string: Any=category_string, cells: Any=cells) -> str | None:
74
+ if starts_with_exact(s_2, "Term Accession Number"):
75
+ return s_2
76
+
77
+ else:
78
+ return None
79
+
80
+
81
+ def mapping(c: FsCell, category_string: Any=category_string, cells: Any=cells) -> str:
82
+ return c.ValueAsString()
83
+
84
+ cell_values: FSharpList[str] = map(mapping, cells)
85
+ (pattern_matching_result,) = (None,)
86
+ if not is_empty(cell_values):
87
+ active_pattern_result: int | None = _007CAC_007C__007C(head(cell_values))
88
+ if active_pattern_result is not None:
89
+ if is_empty(tail(cell_values)):
90
+ pattern_matching_result = 0
91
+
92
+ else:
93
+ pattern_matching_result = 1
94
+
95
+
96
+ else:
97
+ pattern_matching_result = 1
98
+
99
+
100
+ else:
101
+ pattern_matching_result = 1
102
+
103
+ if pattern_matching_result == 0:
104
+ def Value(cells_1: FSharpList[FsCell], category_string: Any=category_string, cells: Any=cells) -> OntologyAnnotation:
105
+ return ActivePattern_ontologyAnnotationFromFsCells(None, None, cells_1)
106
+
107
+ return Value
108
+
109
+ elif pattern_matching_result == 1:
110
+ (pattern_matching_result_1,) = (None,)
111
+ if not is_empty(cell_values):
112
+ active_pattern_result_1: int | None = _007CAC_007C__007C(head(cell_values))
113
+ if active_pattern_result_1 is not None:
114
+ if not is_empty(tail(cell_values)):
115
+ if _007CTSRColumnHeaderRaw_007C__007C(head(tail(cell_values))) is not None:
116
+ if not is_empty(tail(tail(cell_values))):
117
+ if _007CTANColumnHeaderRaw_007C__007C(head(tail(tail(cell_values)))) is not None:
118
+ if is_empty(tail(tail(tail(cell_values)))):
119
+ pattern_matching_result_1 = 0
120
+
121
+ else:
122
+ pattern_matching_result_1 = 1
123
+
124
+
125
+ else:
126
+ pattern_matching_result_1 = 1
127
+
128
+
129
+ else:
130
+ pattern_matching_result_1 = 1
131
+
132
+
133
+ else:
134
+ pattern_matching_result_1 = 1
135
+
136
+
137
+ else:
138
+ pattern_matching_result_1 = 1
139
+
140
+
141
+ else:
142
+ pattern_matching_result_1 = 1
143
+
144
+
145
+ else:
146
+ pattern_matching_result_1 = 1
147
+
148
+ if pattern_matching_result_1 == 0:
149
+ def Value_1(cells_2: FSharpList[FsCell], category_string: Any=category_string, cells: Any=cells) -> OntologyAnnotation:
150
+ return ActivePattern_ontologyAnnotationFromFsCells(1, 2, cells_2)
151
+
152
+ return Value_1
153
+
154
+ elif pattern_matching_result_1 == 1:
155
+ (pattern_matching_result_2,) = (None,)
156
+ if not is_empty(cell_values):
157
+ active_pattern_result_4: int | None = _007CAC_007C__007C(head(cell_values))
158
+ if active_pattern_result_4 is not None:
159
+ if not is_empty(tail(cell_values)):
160
+ if _007CTANColumnHeaderRaw_007C__007C(head(tail(cell_values))) is not None:
161
+ if not is_empty(tail(tail(cell_values))):
162
+ if _007CTSRColumnHeaderRaw_007C__007C(head(tail(tail(cell_values)))) is not None:
163
+ if is_empty(tail(tail(tail(cell_values)))):
164
+ pattern_matching_result_2 = 0
165
+
166
+ else:
167
+ pattern_matching_result_2 = 1
168
+
169
+
170
+ else:
171
+ pattern_matching_result_2 = 1
172
+
173
+
174
+ else:
175
+ pattern_matching_result_2 = 1
176
+
177
+
178
+ else:
179
+ pattern_matching_result_2 = 1
180
+
181
+
182
+ else:
183
+ pattern_matching_result_2 = 1
184
+
185
+
186
+ else:
187
+ pattern_matching_result_2 = 1
188
+
189
+
190
+ else:
191
+ pattern_matching_result_2 = 1
192
+
193
+ if pattern_matching_result_2 == 0:
194
+ def Value_2(cells_3: FSharpList[FsCell], category_string: Any=category_string, cells: Any=cells) -> OntologyAnnotation:
195
+ return ActivePattern_ontologyAnnotationFromFsCells(2, 1, cells_3)
196
+
197
+ return Value_2
198
+
199
+ elif pattern_matching_result_2 == 1:
200
+ return None
201
+
202
+
203
+
204
+
205
+
206
+ def ActivePattern__007CExplication_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
207
+ active_pattern_result: Callable[[FSharpList[FsCell]], OntologyAnnotation] | None = ActivePattern__007CTerm_007C__007C("Explication", cells)
208
+ if active_pattern_result is not None:
209
+ r: Callable[[FSharpList[FsCell]], OntologyAnnotation] = active_pattern_result
210
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
211
+ def _arrow1978(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
212
+ DataContext__set_Explication_279AAFF2(dc, r(cells_1))
213
+ return dc
214
+
215
+ return _arrow1978
216
+
217
+ return Value
218
+
219
+ else:
220
+ return None
221
+
222
+
223
+
224
+ def ActivePattern__007CUnit_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
225
+ active_pattern_result: Callable[[FSharpList[FsCell]], OntologyAnnotation] | None = ActivePattern__007CTerm_007C__007C("Unit", cells)
226
+ if active_pattern_result is not None:
227
+ r: Callable[[FSharpList[FsCell]], OntologyAnnotation] = active_pattern_result
228
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
229
+ def _arrow1979(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
230
+ DataContext__set_Unit_279AAFF2(dc, r(cells_1))
231
+ return dc
232
+
233
+ return _arrow1979
234
+
235
+ return Value
236
+
237
+ else:
238
+ return None
239
+
240
+
241
+
242
+ def ActivePattern__007CObjectType_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
243
+ active_pattern_result: Callable[[FSharpList[FsCell]], OntologyAnnotation] | None = ActivePattern__007CTerm_007C__007C("Object Type", cells)
244
+ if active_pattern_result is not None:
245
+ r: Callable[[FSharpList[FsCell]], OntologyAnnotation] = active_pattern_result
246
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
247
+ def _arrow1980(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
248
+ DataContext__set_ObjectType_279AAFF2(dc, r(cells_1))
249
+ return dc
250
+
251
+ return _arrow1980
252
+
253
+ return Value
254
+
255
+ else:
256
+ return None
257
+
258
+
259
+
260
+ def ActivePattern__007CDescription_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
261
+ def mapping(c: FsCell, cells: Any=cells) -> str:
262
+ return c.ValueAsString()
263
+
264
+ cell_values: FSharpList[str] = map(mapping, cells)
265
+ (pattern_matching_result,) = (None,)
266
+ if not is_empty(cell_values):
267
+ if head(cell_values) == "Description":
268
+ if is_empty(tail(cell_values)):
269
+ pattern_matching_result = 0
270
+
271
+ else:
272
+ pattern_matching_result = 1
273
+
274
+
275
+ else:
276
+ pattern_matching_result = 1
277
+
278
+
279
+ else:
280
+ pattern_matching_result = 1
281
+
282
+ if pattern_matching_result == 0:
283
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
284
+ def _arrow1981(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
285
+ DataContext__set_Description_6DFDD678(dc, Option_fromValueWithDefault("", ActivePattern_freeTextFromFsCells(cells_1)))
286
+ return dc
287
+
288
+ return _arrow1981
289
+
290
+ return Value
291
+
292
+ elif pattern_matching_result == 1:
293
+ return None
294
+
295
+
296
+
297
+ def ActivePattern__007CGeneratedBy_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
298
+ def mapping(c: FsCell, cells: Any=cells) -> str:
299
+ return c.ValueAsString()
300
+
301
+ cell_values: FSharpList[str] = map(mapping, cells)
302
+ (pattern_matching_result,) = (None,)
303
+ if not is_empty(cell_values):
304
+ if head(cell_values) == "Generated By":
305
+ if is_empty(tail(cell_values)):
306
+ pattern_matching_result = 0
307
+
308
+ else:
309
+ pattern_matching_result = 1
310
+
311
+
312
+ else:
313
+ pattern_matching_result = 1
314
+
315
+
316
+ else:
317
+ pattern_matching_result = 1
318
+
319
+ if pattern_matching_result == 0:
320
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
321
+ def _arrow1982(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
322
+ DataContext__set_GeneratedBy_6DFDD678(dc, Option_fromValueWithDefault("", ActivePattern_freeTextFromFsCells(cells_1)))
323
+ return dc
324
+
325
+ return _arrow1982
326
+
327
+ return Value
328
+
329
+ elif pattern_matching_result == 1:
330
+ return None
331
+
332
+
333
+
334
+ def ActivePattern__007CLabel_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
335
+ def mapping(c: FsCell, cells: Any=cells) -> str:
336
+ return c.ValueAsString()
337
+
338
+ cell_values: FSharpList[str] = map(mapping, cells)
339
+ (pattern_matching_result,) = (None,)
340
+ if not is_empty(cell_values):
341
+ if head(cell_values) == "Label":
342
+ if is_empty(tail(cell_values)):
343
+ pattern_matching_result = 0
344
+
345
+ else:
346
+ pattern_matching_result = 1
347
+
348
+
349
+ else:
350
+ pattern_matching_result = 1
351
+
352
+
353
+ else:
354
+ pattern_matching_result = 1
355
+
356
+ if pattern_matching_result == 0:
357
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
358
+ def _arrow1983(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
359
+ DataContext__set_Label_6DFDD678(dc, Option_fromValueWithDefault("", ActivePattern_freeTextFromFsCells(cells_1)))
360
+ return dc
361
+
362
+ return _arrow1983
363
+
364
+ return Value
365
+
366
+ elif pattern_matching_result == 1:
367
+ return None
368
+
369
+
370
+
371
+ def ActivePattern__007CData_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
372
+ def mapping(c: FsCell, cells: Any=cells) -> str:
373
+ return c.ValueAsString()
374
+
375
+ cell_values: FSharpList[str] = map(mapping, cells)
376
+ (pattern_matching_result, cols) = (None, None)
377
+ if not is_empty(cell_values):
378
+ if head(cell_values) == "Data":
379
+ pattern_matching_result = 0
380
+ cols = tail(cell_values)
381
+
382
+ else:
383
+ pattern_matching_result = 1
384
+
385
+
386
+ else:
387
+ pattern_matching_result = 1
388
+
389
+ if pattern_matching_result == 0:
390
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
391
+ def _arrow1984(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
392
+ def mapping_1(y: int) -> int:
393
+ return 1 + y
394
+
395
+ def predicate(s: str) -> bool:
396
+ return starts_with_exact(s, "Data Format")
397
+
398
+ def mapping_2(y_1: int) -> int:
399
+ return 1 + y_1
400
+
401
+ def predicate_1(s_1: str) -> bool:
402
+ return starts_with_exact(s_1, "Data Selector Format")
403
+
404
+ d: Data = ActivePattern_dataFromFsCells(map_1(mapping_1, try_find_index(predicate, cols)), map_1(mapping_2, try_find_index(predicate_1, cols)), cells_1)
405
+ dc.FilePath = d.FilePath
406
+ dc.Selector = d.Selector
407
+ dc.Format = d.Format
408
+ dc.SelectorFormat = d.SelectorFormat
409
+ return dc
410
+
411
+ return _arrow1984
412
+
413
+ return Value
414
+
415
+ elif pattern_matching_result == 1:
416
+ return None
417
+
418
+
419
+
420
+ def ActivePattern__007CComment_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
421
+ def mapping(c: FsCell, cells: Any=cells) -> str:
422
+ return c.ValueAsString()
423
+
424
+ cell_values: FSharpList[str] = map(mapping, cells)
425
+ (pattern_matching_result, key) = (None, None)
426
+ if not is_empty(cell_values):
427
+ active_pattern_result: str | None = ActivePatterns__007CComment_007C__007C(head(cell_values))
428
+ if active_pattern_result is not None:
429
+ if is_empty(tail(cell_values)):
430
+ pattern_matching_result = 0
431
+ key = active_pattern_result
432
+
433
+ else:
434
+ pattern_matching_result = 1
435
+
436
+
437
+ else:
438
+ pattern_matching_result = 1
439
+
440
+
441
+ else:
442
+ pattern_matching_result = 1
443
+
444
+ if pattern_matching_result == 0:
445
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
446
+ def _arrow1985(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
447
+ def mapping_1(c_1: FsCell) -> str:
448
+ return c_1.ValueAsString()
449
+
450
+ comment: str = item(0, map(mapping_1, cells_1))
451
+ (dc.Comments.append(Comment.create(key, comment)))
452
+ return dc
453
+
454
+ return _arrow1985
455
+
456
+ return Value
457
+
458
+ elif pattern_matching_result == 1:
459
+ return None
460
+
461
+
462
+
463
+ def ActivePattern__007CFreetext_007C__007C(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext] | None:
464
+ def mapping(c: FsCell, cells: Any=cells) -> str:
465
+ return c.ValueAsString()
466
+
467
+ cell_values: FSharpList[str] = map(mapping, cells)
468
+ (pattern_matching_result, key) = (None, None)
469
+ if not is_empty(cell_values):
470
+ if is_empty(tail(cell_values)):
471
+ pattern_matching_result = 0
472
+ key = head(cell_values)
473
+
474
+ else:
475
+ pattern_matching_result = 1
476
+
477
+
478
+ else:
479
+ pattern_matching_result = 1
480
+
481
+ if pattern_matching_result == 0:
482
+ def Value(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
483
+ def _arrow1986(cells_1: FSharpList[FsCell], dc: Any=dc) -> DataContext:
484
+ def mapping_1(c_1: FsCell) -> str:
485
+ return c_1.ValueAsString()
486
+
487
+ comment: str = item(0, map(mapping_1, cells_1))
488
+ (dc.Comments.append(Comment.create(key, comment)))
489
+ return dc
490
+
491
+ return _arrow1986
492
+
493
+ return Value
494
+
495
+ elif pattern_matching_result == 1:
496
+ return None
497
+
498
+
499
+
500
+ def from_fs_cells(cells: FSharpList[FsCell]) -> Callable[[DataContext, FSharpList[FsCell]], DataContext]:
501
+ (pattern_matching_result, r) = (None, None)
502
+ active_pattern_result: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CExplication_007C__007C(cells)
503
+ if active_pattern_result is not None:
504
+ pattern_matching_result = 0
505
+ r = active_pattern_result
506
+
507
+ else:
508
+ active_pattern_result_1: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CUnit_007C__007C(cells)
509
+ if active_pattern_result_1 is not None:
510
+ pattern_matching_result = 0
511
+ r = active_pattern_result_1
512
+
513
+ else:
514
+ active_pattern_result_2: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CObjectType_007C__007C(cells)
515
+ if active_pattern_result_2 is not None:
516
+ pattern_matching_result = 0
517
+ r = active_pattern_result_2
518
+
519
+ else:
520
+ active_pattern_result_3: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CDescription_007C__007C(cells)
521
+ if active_pattern_result_3 is not None:
522
+ pattern_matching_result = 0
523
+ r = active_pattern_result_3
524
+
525
+ else:
526
+ active_pattern_result_4: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CGeneratedBy_007C__007C(cells)
527
+ if active_pattern_result_4 is not None:
528
+ pattern_matching_result = 0
529
+ r = active_pattern_result_4
530
+
531
+ else:
532
+ active_pattern_result_5: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CLabel_007C__007C(cells)
533
+ if active_pattern_result_5 is not None:
534
+ pattern_matching_result = 0
535
+ r = active_pattern_result_5
536
+
537
+ else:
538
+ active_pattern_result_6: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CData_007C__007C(cells)
539
+ if active_pattern_result_6 is not None:
540
+ pattern_matching_result = 0
541
+ r = active_pattern_result_6
542
+
543
+ else:
544
+ active_pattern_result_7: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CComment_007C__007C(cells)
545
+ if active_pattern_result_7 is not None:
546
+ pattern_matching_result = 0
547
+ r = active_pattern_result_7
548
+
549
+ else:
550
+ active_pattern_result_8: Callable[[DataContext, FSharpList[FsCell]], DataContext] | None = ActivePattern__007CFreetext_007C__007C(cells)
551
+ if active_pattern_result_8 is not None:
552
+ pattern_matching_result = 0
553
+ r = active_pattern_result_8
554
+
555
+ else:
556
+ pattern_matching_result = 1
557
+
558
+
559
+
560
+
561
+
562
+
563
+
564
+
565
+
566
+ if pattern_matching_result == 0:
567
+ def _arrow1988(dc: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
568
+ def _arrow1987(cells_1: FSharpList[FsCell]) -> DataContext:
569
+ return r(dc)(cells_1)
570
+
571
+ return _arrow1987
572
+
573
+ return _arrow1988
574
+
575
+ elif pattern_matching_result == 1:
576
+ def mapping(c: FsCell, cells: Any=cells) -> str:
577
+ return c.ValueAsString()
578
+
579
+ arg: str = join(", ", map(mapping, cells))
580
+ clo_1: Callable[[DataContext, FSharpList[FsCell]], DataContext] = to_fail(printf("Could not parse data map column: %s"))(arg)
581
+ def _arrow1989(arg_1: DataContext, cells: Any=cells) -> Callable[[FSharpList[FsCell]], DataContext]:
582
+ clo_2: Callable[[FSharpList[FsCell]], DataContext] = clo_1(arg_1)
583
+ return clo_2
584
+
585
+ return _arrow1989
586
+
587
+
588
+
589
+ def to_fs_cells(comment_keys: FSharpList[str]) -> FSharpList[FsCell]:
590
+ def _arrow1998(__unit: None=None, comment_keys: Any=comment_keys) -> IEnumerable_1[FsCell]:
591
+ def _arrow1997(__unit: None=None) -> IEnumerable_1[FsCell]:
592
+ def _arrow1996(__unit: None=None) -> IEnumerable_1[FsCell]:
593
+ def _arrow1995(__unit: None=None) -> IEnumerable_1[FsCell]:
594
+ def _arrow1994(__unit: None=None) -> IEnumerable_1[FsCell]:
595
+ def _arrow1993(__unit: None=None) -> IEnumerable_1[FsCell]:
596
+ def _arrow1992(__unit: None=None) -> IEnumerable_1[FsCell]:
597
+ def _arrow1991(__unit: None=None) -> IEnumerable_1[FsCell]:
598
+ def _arrow1990(ck: str) -> FsCell:
599
+ return FsCell(("Comment [" + ck) + "]")
600
+
601
+ return map_2(_arrow1990, comment_keys)
602
+
603
+ return append(to_enumerable([FsCell("Label")]), delay(_arrow1991))
604
+
605
+ return append(to_enumerable([FsCell("Generated By")]), delay(_arrow1992))
606
+
607
+ return append(to_enumerable([FsCell("Description")]), delay(_arrow1993))
608
+
609
+ return append(to_enumerable([FsCell("Object Type"), FsCell("Term Source REF"), FsCell("Term Accession Number")]), delay(_arrow1994))
610
+
611
+ return append(to_enumerable([FsCell("Unit"), FsCell("Term Source REF"), FsCell("Term Accession Number")]), delay(_arrow1995))
612
+
613
+ return append(to_enumerable([FsCell("Explication"), FsCell("Term Source REF"), FsCell("Term Accession Number")]), delay(_arrow1996))
614
+
615
+ return append(to_enumerable([FsCell("Data"), FsCell("Data Format"), FsCell("Data Selector Format")]), delay(_arrow1997))
616
+
617
+ return to_list(delay(_arrow1998))
618
+
619
+
620
+ __all__ = ["ActivePattern_ontologyAnnotationFromFsCells", "ActivePattern_freeTextFromFsCells", "ActivePattern_dataFromFsCells", "ActivePattern__007CTerm_007C__007C", "ActivePattern__007CExplication_007C__007C", "ActivePattern__007CUnit_007C__007C", "ActivePattern__007CObjectType_007C__007C", "ActivePattern__007CDescription_007C__007C", "ActivePattern__007CGeneratedBy_007C__007C", "ActivePattern__007CLabel_007C__007C", "ActivePattern__007CData_007C__007C", "ActivePattern__007CComment_007C__007C", "ActivePattern__007CFreetext_007C__007C", "from_fs_cells", "to_fs_cells"]
621
+