arctrl 3.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (511) hide show
  1. arctrl/__init__.py +23 -0
  2. arctrl/cwl.py +12 -0
  3. arctrl/py/CWL/__init__.py +0 -0
  4. arctrl/py/CWL/cwlprocessing_unit.py +221 -0
  5. arctrl/py/CWL/cwltypes.py +364 -0
  6. arctrl/py/CWL/decode.py +3532 -0
  7. arctrl/py/CWL/encode.py +1905 -0
  8. arctrl/py/CWL/expression_tool_description.py +192 -0
  9. arctrl/py/CWL/hash_helpers.py +60 -0
  10. arctrl/py/CWL/inputs.py +122 -0
  11. arctrl/py/CWL/operation_description.py +169 -0
  12. arctrl/py/CWL/outputs.py +171 -0
  13. arctrl/py/CWL/parameter_reference.py +74 -0
  14. arctrl/py/CWL/requirements.py +350 -0
  15. arctrl/py/CWL/tool_description.py +192 -0
  16. arctrl/py/CWL/workflow_description.py +181 -0
  17. arctrl/py/CWL/workflow_steps.py +354 -0
  18. arctrl/py/Contract/__init__.py +0 -0
  19. arctrl/py/Contract/arc.py +89 -0
  20. arctrl/py/Contract/arc_assay.py +125 -0
  21. arctrl/py/Contract/arc_investigation.py +88 -0
  22. arctrl/py/Contract/arc_run.py +291 -0
  23. arctrl/py/Contract/arc_study.py +126 -0
  24. arctrl/py/Contract/arc_workflow.py +213 -0
  25. arctrl/py/Contract/contract.py +153 -0
  26. arctrl/py/Contract/datamap.py +396 -0
  27. arctrl/py/Contract/git.py +116 -0
  28. arctrl/py/Contract/license.py +58 -0
  29. arctrl/py/Contract/validation_packages_config.py +107 -0
  30. arctrl/py/ContractIO/__init__.py +0 -0
  31. arctrl/py/ContractIO/contract_io.py +350 -0
  32. arctrl/py/ContractIO/file_system_helper.py +264 -0
  33. arctrl/py/Conversion/__init__.py +0 -0
  34. arctrl/py/Conversion/assay.py +151 -0
  35. arctrl/py/Conversion/basic.py +559 -0
  36. arctrl/py/Conversion/column_index.py +91 -0
  37. arctrl/py/Conversion/datamap.py +36 -0
  38. arctrl/py/Conversion/date_time.py +32 -0
  39. arctrl/py/Conversion/investigation.py +171 -0
  40. arctrl/py/Conversion/person.py +148 -0
  41. arctrl/py/Conversion/process.py +828 -0
  42. arctrl/py/Conversion/run.py +367 -0
  43. arctrl/py/Conversion/scholarly_article.py +163 -0
  44. arctrl/py/Conversion/study.py +99 -0
  45. arctrl/py/Conversion/table.py +229 -0
  46. arctrl/py/Conversion/workflow.py +680 -0
  47. arctrl/py/Core/Helper/__init__.py +0 -0
  48. arctrl/py/Core/Helper/collections_.py +512 -0
  49. arctrl/py/Core/Helper/date_time.py +26 -0
  50. arctrl/py/Core/Helper/hash_codes.py +60 -0
  51. arctrl/py/Core/Helper/identifier.py +290 -0
  52. arctrl/py/Core/Helper/orcid.py +42 -0
  53. arctrl/py/Core/Helper/printer.py +13 -0
  54. arctrl/py/Core/Helper/regex.py +554 -0
  55. arctrl/py/Core/Helper/sem_ver.py +71 -0
  56. arctrl/py/Core/Helper/url.py +148 -0
  57. arctrl/py/Core/Process/__init__.py +0 -0
  58. arctrl/py/Core/Process/column_index.py +280 -0
  59. arctrl/py/Core/Process/component.py +200 -0
  60. arctrl/py/Core/Process/factor.py +151 -0
  61. arctrl/py/Core/Process/factor_value.py +182 -0
  62. arctrl/py/Core/Process/material.py +74 -0
  63. arctrl/py/Core/Process/material_attribute.py +95 -0
  64. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  65. arctrl/py/Core/Process/material_type.py +45 -0
  66. arctrl/py/Core/Process/process.py +477 -0
  67. arctrl/py/Core/Process/process_input.py +265 -0
  68. arctrl/py/Core/Process/process_output.py +235 -0
  69. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  70. arctrl/py/Core/Process/process_sequence.py +435 -0
  71. arctrl/py/Core/Process/protocol.py +175 -0
  72. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  73. arctrl/py/Core/Process/sample.py +82 -0
  74. arctrl/py/Core/Process/source.py +62 -0
  75. arctrl/py/Core/Table/__init__.py +0 -0
  76. arctrl/py/Core/Table/arc_table.py +1206 -0
  77. arctrl/py/Core/Table/arc_table_aux.py +1308 -0
  78. arctrl/py/Core/Table/arc_tables.py +574 -0
  79. arctrl/py/Core/Table/composite_cell.py +319 -0
  80. arctrl/py/Core/Table/composite_column.py +73 -0
  81. arctrl/py/Core/Table/composite_header.py +739 -0
  82. arctrl/py/Core/__init__.py +0 -0
  83. arctrl/py/Core/arc_types.py +5312 -0
  84. arctrl/py/Core/comment.py +128 -0
  85. arctrl/py/Core/comment_list.py +127 -0
  86. arctrl/py/Core/conversion.py +1375 -0
  87. arctrl/py/Core/data.py +247 -0
  88. arctrl/py/Core/data_context.py +157 -0
  89. arctrl/py/Core/data_file.py +112 -0
  90. arctrl/py/Core/datamap.py +217 -0
  91. arctrl/py/Core/identifier_setters.py +43 -0
  92. arctrl/py/Core/iproperty_value.py +36 -0
  93. arctrl/py/Core/ontology_annotation.py +298 -0
  94. arctrl/py/Core/ontology_source_reference.py +114 -0
  95. arctrl/py/Core/person.py +259 -0
  96. arctrl/py/Core/publication.py +161 -0
  97. arctrl/py/Core/template.py +231 -0
  98. arctrl/py/Core/templates.py +148 -0
  99. arctrl/py/Core/uri.py +11 -0
  100. arctrl/py/Core/value.py +188 -0
  101. arctrl/py/FileSystem/__init__.py +0 -0
  102. arctrl/py/FileSystem/commit.py +21 -0
  103. arctrl/py/FileSystem/default_gitattributes.py +1 -0
  104. arctrl/py/FileSystem/default_gitignore.py +1 -0
  105. arctrl/py/FileSystem/default_license.py +1 -0
  106. arctrl/py/FileSystem/file_system.py +58 -0
  107. arctrl/py/FileSystem/file_system_tree.py +483 -0
  108. arctrl/py/FileSystem/path.py +266 -0
  109. arctrl/py/Json/Datamap/__init__.py +0 -0
  110. arctrl/py/Json/Datamap/data_context.py +101 -0
  111. arctrl/py/Json/Datamap/datamap.py +53 -0
  112. arctrl/py/Json/Process/__init__.py +0 -0
  113. arctrl/py/Json/Process/assay_materials.py +46 -0
  114. arctrl/py/Json/Process/component.py +125 -0
  115. arctrl/py/Json/Process/factor.py +107 -0
  116. arctrl/py/Json/Process/factor_value.py +101 -0
  117. arctrl/py/Json/Process/material.py +226 -0
  118. arctrl/py/Json/Process/material_attribute.py +79 -0
  119. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  120. arctrl/py/Json/Process/material_type.py +53 -0
  121. arctrl/py/Json/Process/process.py +296 -0
  122. arctrl/py/Json/Process/process_input.py +83 -0
  123. arctrl/py/Json/Process/process_output.py +67 -0
  124. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  125. arctrl/py/Json/Process/protocol.py +354 -0
  126. arctrl/py/Json/Process/protocol_parameter.py +91 -0
  127. arctrl/py/Json/Process/sample.py +277 -0
  128. arctrl/py/Json/Process/source.py +214 -0
  129. arctrl/py/Json/Process/study_materials.py +52 -0
  130. arctrl/py/Json/Process/value.py +56 -0
  131. arctrl/py/Json/ROCrate/__init__.py +0 -0
  132. arctrl/py/Json/ROCrate/ldcontext.py +143 -0
  133. arctrl/py/Json/ROCrate/ldgraph.py +117 -0
  134. arctrl/py/Json/ROCrate/ldnode.py +304 -0
  135. arctrl/py/Json/ROCrate/ldref.py +44 -0
  136. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  137. arctrl/py/Json/Table/__init__.py +0 -0
  138. arctrl/py/Json/Table/arc_table.py +375 -0
  139. arctrl/py/Json/Table/cell_table.py +83 -0
  140. arctrl/py/Json/Table/composite_cell.py +136 -0
  141. arctrl/py/Json/Table/composite_header.py +67 -0
  142. arctrl/py/Json/Table/iotype.py +24 -0
  143. arctrl/py/Json/Table/oatable.py +82 -0
  144. arctrl/py/Json/Table/templates.py +281 -0
  145. arctrl/py/Json/__init__.py +0 -0
  146. arctrl/py/Json/assay.py +600 -0
  147. arctrl/py/Json/comment.py +206 -0
  148. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  149. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  150. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  151. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  152. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  153. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  154. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  155. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  156. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  157. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  158. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  159. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  160. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  161. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  162. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  163. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  164. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  165. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  166. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  167. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  168. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  169. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  170. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  171. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  172. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  173. arctrl/py/Json/converter_options.py +23 -0
  174. arctrl/py/Json/data.py +356 -0
  175. arctrl/py/Json/data_file.py +63 -0
  176. arctrl/py/Json/decode.py +271 -0
  177. arctrl/py/Json/encode.py +140 -0
  178. arctrl/py/Json/idtable.py +44 -0
  179. arctrl/py/Json/investigation.py +695 -0
  180. arctrl/py/Json/ontology_annotation.py +404 -0
  181. arctrl/py/Json/ontology_source_reference.py +255 -0
  182. arctrl/py/Json/person.py +658 -0
  183. arctrl/py/Json/property_value.py +359 -0
  184. arctrl/py/Json/publication.py +279 -0
  185. arctrl/py/Json/run.py +275 -0
  186. arctrl/py/Json/string_table.py +87 -0
  187. arctrl/py/Json/study.py +793 -0
  188. arctrl/py/Json/workflow.py +307 -0
  189. arctrl/py/JsonIO/Process/__init__.py +0 -0
  190. arctrl/py/JsonIO/Process/component.py +60 -0
  191. arctrl/py/JsonIO/Process/factor.py +36 -0
  192. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  193. arctrl/py/JsonIO/Process/material.py +60 -0
  194. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  195. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  196. arctrl/py/JsonIO/Process/material_type.py +36 -0
  197. arctrl/py/JsonIO/Process/process.py +60 -0
  198. arctrl/py/JsonIO/Process/process_input.py +38 -0
  199. arctrl/py/JsonIO/Process/process_output.py +60 -0
  200. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  201. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  202. arctrl/py/JsonIO/Process/protocol.py +60 -0
  203. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  204. arctrl/py/JsonIO/Process/sample.py +60 -0
  205. arctrl/py/JsonIO/Process/source.py +60 -0
  206. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  207. arctrl/py/JsonIO/Process/value.py +32 -0
  208. arctrl/py/JsonIO/Table/__init__.py +0 -0
  209. arctrl/py/JsonIO/Table/arc_table.py +103 -0
  210. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  211. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  212. arctrl/py/JsonIO/Table/compression.py +67 -0
  213. arctrl/py/JsonIO/Table/iotype.py +36 -0
  214. arctrl/py/JsonIO/Table/templates.py +113 -0
  215. arctrl/py/JsonIO/__init__.py +0 -0
  216. arctrl/py/JsonIO/assay.py +113 -0
  217. arctrl/py/JsonIO/comment.py +80 -0
  218. arctrl/py/JsonIO/data.py +60 -0
  219. arctrl/py/JsonIO/data_file.py +58 -0
  220. arctrl/py/JsonIO/datamap.py +36 -0
  221. arctrl/py/JsonIO/decode.py +9 -0
  222. arctrl/py/JsonIO/encode.py +1 -0
  223. arctrl/py/JsonIO/investigation.py +91 -0
  224. arctrl/py/JsonIO/ldobject.py +106 -0
  225. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  226. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  227. arctrl/py/JsonIO/person.py +82 -0
  228. arctrl/py/JsonIO/publication.py +82 -0
  229. arctrl/py/JsonIO/run.py +68 -0
  230. arctrl/py/JsonIO/study.py +114 -0
  231. arctrl/py/JsonIO/workflow.py +68 -0
  232. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  233. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  234. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  235. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  236. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  237. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  238. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  239. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  240. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  241. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  242. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  243. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  244. arctrl/py/ROCrate/LDTypes/__init__.py +0 -0
  245. arctrl/py/ROCrate/LDTypes/comment.py +131 -0
  246. arctrl/py/ROCrate/LDTypes/computational_workflow.py +455 -0
  247. arctrl/py/ROCrate/LDTypes/computer_language.py +269 -0
  248. arctrl/py/ROCrate/LDTypes/create_action.py +303 -0
  249. arctrl/py/ROCrate/LDTypes/creative_work.py +566 -0
  250. arctrl/py/ROCrate/LDTypes/dataset.py +943 -0
  251. arctrl/py/ROCrate/LDTypes/defined_term.py +131 -0
  252. arctrl/py/ROCrate/LDTypes/file.py +281 -0
  253. arctrl/py/ROCrate/LDTypes/formal_parameter.py +431 -0
  254. arctrl/py/ROCrate/LDTypes/lab_process.py +352 -0
  255. arctrl/py/ROCrate/LDTypes/lab_protocol.py +395 -0
  256. arctrl/py/ROCrate/LDTypes/organization.py +83 -0
  257. arctrl/py/ROCrate/LDTypes/person.py +484 -0
  258. arctrl/py/ROCrate/LDTypes/postal_address.py +195 -0
  259. arctrl/py/ROCrate/LDTypes/property_value.py +952 -0
  260. arctrl/py/ROCrate/LDTypes/sample.py +202 -0
  261. arctrl/py/ROCrate/LDTypes/scholarly_article.py +229 -0
  262. arctrl/py/ROCrate/LDTypes/software_source_code.py +310 -0
  263. arctrl/py/ROCrate/LDTypes/workflow_invocation.py +48 -0
  264. arctrl/py/ROCrate/LDTypes/workflow_protocol.py +52 -0
  265. arctrl/py/ROCrate/__init__.py +0 -0
  266. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  267. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  268. arctrl/py/ROCrate/helper.py +8 -0
  269. arctrl/py/ROCrate/ldcontext.py +406 -0
  270. arctrl/py/ROCrate/ldobject.py +1247 -0
  271. arctrl/py/ROCrate/rocrate_context.py +51 -0
  272. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  273. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +203 -0
  274. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  275. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +305 -0
  276. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  277. arctrl/py/Spreadsheet/DatamapTable/__init__.py +0 -0
  278. arctrl/py/Spreadsheet/DatamapTable/datamap_column.py +114 -0
  279. arctrl/py/Spreadsheet/DatamapTable/datamap_header.py +621 -0
  280. arctrl/py/Spreadsheet/DatamapTable/datamap_table.py +118 -0
  281. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  282. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  283. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  284. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  285. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  286. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  287. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  288. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  289. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  290. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  291. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  292. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  293. arctrl/py/Spreadsheet/Metadata/sparse_table.py +499 -0
  294. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  295. arctrl/py/Spreadsheet/Metadata/workflow.py +159 -0
  296. arctrl/py/Spreadsheet/__init__.py +0 -0
  297. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  298. arctrl/py/Spreadsheet/arc_investigation.py +435 -0
  299. arctrl/py/Spreadsheet/arc_run.py +190 -0
  300. arctrl/py/Spreadsheet/arc_study.py +144 -0
  301. arctrl/py/Spreadsheet/arc_workflow.py +177 -0
  302. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  303. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  304. arctrl/py/Spreadsheet/datamap.py +43 -0
  305. arctrl/py/Spreadsheet/template.py +460 -0
  306. arctrl/py/ValidationPackages/__init__.py +0 -0
  307. arctrl/py/ValidationPackages/validation_package.py +82 -0
  308. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  309. arctrl/py/WebRequest/__init__.py +0 -0
  310. arctrl/py/WebRequest/web_request.py +9 -0
  311. arctrl/py/WebRequest/web_request_py.py +135 -0
  312. arctrl/py/WorkflowGraph/__init__.py +0 -0
  313. arctrl/py/WorkflowGraph/adapters.py +141 -0
  314. arctrl/py/WorkflowGraph/build_options.py +45 -0
  315. arctrl/py/WorkflowGraph/builder.py +720 -0
  316. arctrl/py/WorkflowGraph/graph_types.py +260 -0
  317. arctrl/py/WorkflowGraph/query_helpers.py +76 -0
  318. arctrl/py/WorkflowGraph/reference_parsing.py +59 -0
  319. arctrl/py/WorkflowGraph/visualization_siren.py +574 -0
  320. arctrl/py/WorkflowGraph/workflow_graph.py +119 -0
  321. arctrl/py/Yaml/__init__.py +0 -0
  322. arctrl/py/Yaml/decode.py +1 -0
  323. arctrl/py/Yaml/encode.py +10 -0
  324. arctrl/py/Yaml/validation_package.py +77 -0
  325. arctrl/py/Yaml/validation_packages_config.py +86 -0
  326. arctrl/py/__init__.py +0 -0
  327. arctrl/py/arc.py +1891 -0
  328. arctrl/py/column_index.py +280 -0
  329. arctrl/py/conversion.py +142 -0
  330. arctrl/py/cross_async.py +76 -0
  331. arctrl/py/cwlrun_resolver.py +228 -0
  332. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  333. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  334. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  335. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  336. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  337. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  338. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  339. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  340. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  341. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  342. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  343. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  344. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  345. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  346. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  347. arctrl/py/fable_modules/fable_library/char.py +237 -0
  348. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  349. arctrl/py/fable_modules/fable_library/date.py +779 -0
  350. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  351. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  352. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  353. arctrl/py/fable_modules/fable_library/double.py +87 -0
  354. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  355. arctrl/py/fable_modules/fable_library/event.py +206 -0
  356. arctrl/py/fable_modules/fable_library/file.py +107 -0
  357. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  358. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  359. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  360. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  361. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  362. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  363. arctrl/py/fable_modules/fable_library/long.py +240 -0
  364. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  365. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  366. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  367. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  368. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  369. arctrl/py/fable_modules/fable_library/native.py +45 -0
  370. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  371. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  372. arctrl/py/fable_modules/fable_library/option.py +128 -0
  373. arctrl/py/fable_modules/fable_library/path.py +62 -0
  374. arctrl/py/fable_modules/fable_library/range.py +117 -0
  375. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  376. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  377. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  378. arctrl/py/fable_modules/fable_library/result.py +212 -0
  379. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  380. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  381. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  382. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  383. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  384. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  385. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  386. arctrl/py/fable_modules/fable_library/task.py +116 -0
  387. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  388. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  389. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  390. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  391. arctrl/py/fable_modules/fable_library/types.py +401 -0
  392. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  393. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  394. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  395. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  396. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  397. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  398. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  399. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  400. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  401. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  402. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  403. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  404. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  405. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  406. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  407. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  408. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  409. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  410. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  411. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  412. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  413. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  414. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  415. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  416. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  417. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  418. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  419. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  420. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  421. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +340 -0
  422. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +466 -0
  423. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  424. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  425. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  426. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  427. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  428. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  429. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  430. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  431. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  432. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +463 -0
  433. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  434. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  435. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  436. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  437. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  438. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  439. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +54 -0
  440. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  441. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  442. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +216 -0
  443. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  444. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +43 -0
  445. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +190 -0
  446. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +92 -0
  447. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +77 -0
  448. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  449. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  450. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +461 -0
  451. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +117 -0
  452. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  453. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  454. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +236 -0
  455. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  456. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  457. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +192 -0
  458. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +610 -0
  459. arctrl/py/fable_modules/fs_spreadsheet/hash_codes.py +60 -0
  460. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +329 -0
  461. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  462. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +60 -0
  463. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  464. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  465. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  466. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +54 -0
  467. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +41 -0
  468. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +52 -0
  469. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  470. arctrl/py/fable_modules/siren/__init__.py +0 -0
  471. arctrl/py/fable_modules/siren/config.py +1038 -0
  472. arctrl/py/fable_modules/siren/formatting.py +1121 -0
  473. arctrl/py/fable_modules/siren/siren.py +1941 -0
  474. arctrl/py/fable_modules/siren/siren_types.py +1229 -0
  475. arctrl/py/fable_modules/siren/theme_variables.py +517 -0
  476. arctrl/py/fable_modules/siren/util.py +37 -0
  477. arctrl/py/fable_modules/siren/yaml.py +101 -0
  478. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  479. arctrl/py/fable_modules/thoth_json_core/decode.py +1614 -0
  480. arctrl/py/fable_modules/thoth_json_core/encode.py +305 -0
  481. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  482. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  483. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  484. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  485. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  486. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  487. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  488. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  489. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  490. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  491. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  492. arctrl/py/fable_modules/yamlicious/flow_to_block.py +994 -0
  493. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  494. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  495. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  496. arctrl/py/fable_modules/yamlicious/reader.py +739 -0
  497. arctrl/py/fable_modules/yamlicious/regex.py +29 -0
  498. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +265 -0
  499. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  500. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  501. arctrl/py/json.py +389 -0
  502. arctrl/py/license.py +169 -0
  503. arctrl/py/rocrate_io.py +242 -0
  504. arctrl/py/template_web.py +23 -0
  505. arctrl/py/xlsx.py +212 -0
  506. arctrl/py/yaml.py +79 -0
  507. arctrl/rocrate.py +21 -0
  508. arctrl-3.0.0.dist-info/METADATA +157 -0
  509. arctrl-3.0.0.dist-info/RECORD +511 -0
  510. arctrl-3.0.0.dist-info/WHEEL +4 -0
  511. arctrl-3.0.0.dist-info/licenses/LICENSE +21 -0
@@ -0,0 +1,280 @@
1
+ from __future__ import annotations
2
+ from typing import Any
3
+ from .Core.comment import Comment
4
+ from .Core.comment_list import try_item
5
+ from .Core.ontology_annotation import OntologyAnnotation
6
+ from .Core.Process.component import (Component, Component_fromISAString_7C9A7CF8)
7
+ from .Core.Process.factor import Factor
8
+ from .Core.Process.factor_value import FactorValue
9
+ from .Core.Process.material_attribute import (MaterialAttribute, MaterialAttribute_fromString_5980DC03)
10
+ from .Core.Process.material_attribute_value import MaterialAttributeValue
11
+ from .Core.Process.process_parameter_value import ProcessParameterValue
12
+ from .Core.Process.protocol_parameter import ProtocolParameter
13
+ from .fable_modules.fable_library.int32 import try_parse
14
+ from .fable_modules.fable_library.option import (bind, value)
15
+ from .fable_modules.fable_library.seq import find_index
16
+ from .fable_modules.fable_library.types import (FSharpRef, Array)
17
+ from .fable_modules.fable_library.util import (int32_to_string, equals)
18
+
19
+ def try_int(str_1: str) -> int | None:
20
+ match_value: tuple[bool, int]
21
+ out_arg: int = 0
22
+ def _arrow4197(__unit: None=None, str_1: Any=str_1) -> int:
23
+ return out_arg
24
+
25
+ def _arrow4198(v: int, str_1: Any=str_1) -> None:
26
+ nonlocal out_arg
27
+ out_arg = v or 0
28
+
29
+ match_value = (try_parse(str_1, 511, False, 32, FSharpRef(_arrow4197, _arrow4198)), out_arg)
30
+ if match_value[0]:
31
+ return match_value[1]
32
+
33
+ else:
34
+ return None
35
+
36
+
37
+
38
+ order_name: str = "ColumnIndex"
39
+
40
+ def create_order_comment(index: int) -> Comment:
41
+ return Comment.create(order_name, int32_to_string(index))
42
+
43
+
44
+ def try_get_index(comments: Array[Comment]) -> int | None:
45
+ match_value: str | None = try_item(order_name, comments)
46
+ if match_value is not None:
47
+ ci: str = match_value
48
+ def predicate(c: Comment, comments: Any=comments) -> bool:
49
+ return equals(c.Name, order_name)
50
+
51
+ i: int = find_index(predicate, comments) or 0
52
+ comments.pop(i)
53
+ return try_int(ci)
54
+
55
+ else:
56
+ return None
57
+
58
+
59
+
60
+ def set_ontology_annotation_index_inplace(i: int, oa: OntologyAnnotation) -> None:
61
+ (oa.Comments.append(create_order_comment(i)))
62
+
63
+
64
+ def set_ontology_annotation_index(i: int, oa: OntologyAnnotation) -> OntologyAnnotation:
65
+ oac: OntologyAnnotation = oa.Copy()
66
+ set_ontology_annotation_index_inplace(i, oac)
67
+ return oac
68
+
69
+
70
+ def try_get_ontology_annotation_index(oa: OntologyAnnotation) -> int | None:
71
+ return try_get_index(oa.Comments)
72
+
73
+
74
+ def try_get_parameter_index(param: ProtocolParameter) -> int | None:
75
+ def binder(oa: OntologyAnnotation, param: Any=param) -> int | None:
76
+ return try_get_index(oa.Comments)
77
+
78
+ return bind(binder, param.ParameterName)
79
+
80
+
81
+ def try_get_parameter_column_index(param_value: ProcessParameterValue) -> int | None:
82
+ def _arrow4199(param: ProtocolParameter, param_value: Any=param_value) -> int | None:
83
+ return try_get_parameter_index(param)
84
+
85
+ return bind(_arrow4199, param_value.Category)
86
+
87
+
88
+ def try_get_factor_index(factor: Factor) -> int | None:
89
+ def binder(oa: OntologyAnnotation, factor: Any=factor) -> int | None:
90
+ return try_get_index(oa.Comments)
91
+
92
+ return bind(binder, factor.FactorType)
93
+
94
+
95
+ def try_get_factor_column_index(factor_value: FactorValue) -> int | None:
96
+ def _arrow4200(factor: Factor, factor_value: Any=factor_value) -> int | None:
97
+ return try_get_factor_index(factor)
98
+
99
+ return bind(_arrow4200, factor_value.Category)
100
+
101
+
102
+ def try_get_characteristic_index(characteristic: MaterialAttribute) -> int | None:
103
+ def binder(oa: OntologyAnnotation, characteristic: Any=characteristic) -> int | None:
104
+ return try_get_index(oa.Comments)
105
+
106
+ return bind(binder, characteristic.CharacteristicType)
107
+
108
+
109
+ def try_get_characteristic_column_index(characteristic_value: MaterialAttributeValue) -> int | None:
110
+ def _arrow4201(characteristic: MaterialAttribute, characteristic_value: Any=characteristic_value) -> int | None:
111
+ return try_get_characteristic_index(characteristic)
112
+
113
+ return bind(_arrow4201, characteristic_value.Category)
114
+
115
+
116
+ def try_get_component_index(comp: Component) -> int | None:
117
+ def binder(oa: OntologyAnnotation, comp: Any=comp) -> int | None:
118
+ return try_get_index(oa.Comments)
119
+
120
+ return bind(binder, comp.ComponentType)
121
+
122
+
123
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static(name: str, term: str, source: str, accession: str, value_index: int) -> Factor:
124
+ return Factor.from_string(name, term, source, accession, [create_order_comment(value_index)])
125
+
126
+
127
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F(f: OntologyAnnotation) -> int:
128
+ return value(try_get_ontology_annotation_index(f))
129
+
130
+
131
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this: OntologyAnnotation) -> int:
132
+ return value(try_get_ontology_annotation_index(this))
133
+
134
+
135
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F(f: OntologyAnnotation) -> int | None:
136
+ return try_get_ontology_annotation_index(f)
137
+
138
+
139
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex(this: OntologyAnnotation) -> int | None:
140
+ return try_get_ontology_annotation_index(this)
141
+
142
+
143
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(i: int, oa: OntologyAnnotation) -> OntologyAnnotation:
144
+ return set_ontology_annotation_index(i, oa)
145
+
146
+
147
+ def ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(this: OntologyAnnotation, i: int) -> None:
148
+ set_ontology_annotation_index_inplace(i, this)
149
+
150
+
151
+ def ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static(name: str, term: str, source: str, accession: str, value_index: int) -> Factor:
152
+ return Factor.from_string(name, term, source, accession, [create_order_comment(value_index)])
153
+
154
+
155
+ def ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9(f: Factor) -> int:
156
+ return value(try_get_factor_index(f))
157
+
158
+
159
+ def ARCtrl_Process_Factor__Factor_GetColumnIndex(this: Factor) -> int:
160
+ return value(try_get_factor_index(this))
161
+
162
+
163
+ def ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9(f: Factor) -> int | None:
164
+ return try_get_factor_index(f)
165
+
166
+
167
+ def ARCtrl_Process_Factor__Factor_TryGetColumnIndex(this: Factor) -> int | None:
168
+ return try_get_factor_index(this)
169
+
170
+
171
+ def ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732(f: FactorValue) -> int:
172
+ return value(try_get_factor_column_index(f))
173
+
174
+
175
+ def ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex(this: FactorValue) -> int:
176
+ return value(try_get_factor_column_index(this))
177
+
178
+
179
+ def ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732(f: FactorValue) -> int | None:
180
+ return try_get_factor_column_index(f)
181
+
182
+
183
+ def ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex(this: FactorValue) -> int | None:
184
+ return try_get_factor_column_index(this)
185
+
186
+
187
+ def ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static(term: str, source: str, accession: str, value_index: int) -> MaterialAttribute:
188
+ return MaterialAttribute_fromString_5980DC03(term, source, accession, [create_order_comment(value_index)])
189
+
190
+
191
+ def ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD(m: MaterialAttribute) -> int:
192
+ return value(try_get_characteristic_index(m))
193
+
194
+
195
+ def ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex(this: MaterialAttribute) -> int:
196
+ return value(try_get_characteristic_index(this))
197
+
198
+
199
+ def ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD(m: MaterialAttribute) -> int | None:
200
+ return try_get_characteristic_index(m)
201
+
202
+
203
+ def ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex(this: MaterialAttribute) -> int | None:
204
+ return try_get_characteristic_index(this)
205
+
206
+
207
+ def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8(m: MaterialAttributeValue) -> int:
208
+ return value(try_get_characteristic_column_index(m))
209
+
210
+
211
+ def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this: MaterialAttributeValue) -> int:
212
+ return value(try_get_characteristic_column_index(this))
213
+
214
+
215
+ def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8(m: MaterialAttributeValue) -> int | None:
216
+ return try_get_characteristic_column_index(m)
217
+
218
+
219
+ def ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex(this: MaterialAttributeValue) -> int | None:
220
+ return try_get_characteristic_column_index(this)
221
+
222
+
223
+ def ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static(term: str, source: str, accession: str, value_index: int) -> ProtocolParameter:
224
+ return ProtocolParameter.from_string(term, source, accession, [create_order_comment(value_index)])
225
+
226
+
227
+ def ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15(p: ProtocolParameter) -> int:
228
+ return value(try_get_parameter_index(p))
229
+
230
+
231
+ def ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex(this: ProtocolParameter) -> int:
232
+ return value(try_get_parameter_index(this))
233
+
234
+
235
+ def ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15(p: ProtocolParameter) -> int | None:
236
+ return try_get_parameter_index(p)
237
+
238
+
239
+ def ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(this: ProtocolParameter) -> int | None:
240
+ return try_get_parameter_index(this)
241
+
242
+
243
+ def ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263(p: ProcessParameterValue) -> int:
244
+ return value(try_get_parameter_column_index(p))
245
+
246
+
247
+ def ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this: ProcessParameterValue) -> int:
248
+ return value(try_get_parameter_column_index(this))
249
+
250
+
251
+ def ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263(p: ProcessParameterValue) -> int | None:
252
+ return try_get_parameter_column_index(p)
253
+
254
+
255
+ def ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex(this: ProcessParameterValue) -> int | None:
256
+ return try_get_parameter_column_index(this)
257
+
258
+
259
+ def ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static(name: str, term: str, source: str, accession: str, value_index: int) -> Component:
260
+ return Component_fromISAString_7C9A7CF8(name, term, source, accession, [create_order_comment(value_index)])
261
+
262
+
263
+ def ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25(f: Component) -> int:
264
+ return value(try_get_component_index(f))
265
+
266
+
267
+ def ARCtrl_Process_Component__Component_GetColumnIndex(this: Component) -> int:
268
+ return value(try_get_component_index(this))
269
+
270
+
271
+ def ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25(f: Component) -> int | None:
272
+ return try_get_component_index(f)
273
+
274
+
275
+ def ARCtrl_Process_Component__Component_TryGetColumnIndex(this: Component) -> int | None:
276
+ return try_get_component_index(this)
277
+
278
+
279
+ __all__ = ["try_int", "order_name", "create_order_comment", "try_get_index", "set_ontology_annotation_index_inplace", "set_ontology_annotation_index", "try_get_ontology_annotation_index", "try_get_parameter_index", "try_get_parameter_column_index", "try_get_factor_index", "try_get_factor_column_index", "try_get_characteristic_index", "try_get_characteristic_column_index", "try_get_component_index", "ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static", "ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F", "ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex", "ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F", "ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex", "ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static", "ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4", "ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static", "ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9", "ARCtrl_Process_Factor__Factor_GetColumnIndex", "ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9", "ARCtrl_Process_Factor__Factor_TryGetColumnIndex", "ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732", "ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex", "ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732", "ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD", "ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8", "ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex", "ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static", "ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15", "ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex", "ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15", "ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex", "ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263", "ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex", "ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263", "ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex", "ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static", "ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25", "ARCtrl_Process_Component__Component_GetColumnIndex", "ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25", "ARCtrl_Process_Component__Component_TryGetColumnIndex"]
280
+
@@ -0,0 +1,142 @@
1
+ from __future__ import annotations
2
+ from .Core.arc_types import (ArcAssay, ArcStudy, ArcWorkflow, ArcRun, ArcInvestigation)
3
+ from .FileSystem.file_system import FileSystem
4
+ from .ROCrate.ldcontext import LDContext
5
+ from .ROCrate.ldobject import (LDNode, LDGraph)
6
+ from .Conversion.assay import (AssayConversion_composeAssay_Z5C53FD5C, AssayConversion_decomposeAssay_Z6839B9E8)
7
+ from .Conversion.investigation import (InvestigationConversion_composeInvestigation_Z284BC0AC, InvestigationConversion_decomposeInvestigation_Z6839B9E8)
8
+ from .Conversion.run import (RunConversion_composeRun_Z8CC08AC, RunConversion_decomposeRun_Z6839B9E8)
9
+ from .Conversion.study import (StudyConversion_composeStudy_ZFE0E38E, StudyConversion_decomposeStudy_Z6839B9E8)
10
+ from .Conversion.workflow import (WorkflowConversion_composeWorkflow_42450E6E, WorkflowConversion_decomposeWorkflow_Z6839B9E8)
11
+ from .fable_modules.fable_library.reflection import (TypeInfo, class_type)
12
+
13
+ def ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C(this: ArcAssay, fs: FileSystem | None=None) -> LDNode:
14
+ return AssayConversion_composeAssay_Z5C53FD5C(this, fs)
15
+
16
+
17
+ def ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcAssay:
18
+ return AssayConversion_decomposeAssay_Z6839B9E8(a, graph, context)
19
+
20
+
21
+ def ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C(this: ArcStudy, fs: FileSystem | None=None) -> LDNode:
22
+ return StudyConversion_composeStudy_ZFE0E38E(this, fs)
23
+
24
+
25
+ def ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcStudy:
26
+ return StudyConversion_decomposeStudy_Z6839B9E8(a, graph, context)
27
+
28
+
29
+ def ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C(this: ArcWorkflow, fs: FileSystem | None=None) -> LDNode:
30
+ return WorkflowConversion_composeWorkflow_42450E6E(this, fs)
31
+
32
+
33
+ def ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcWorkflow:
34
+ return WorkflowConversion_decomposeWorkflow_Z6839B9E8(a, graph, context)
35
+
36
+
37
+ def ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C(this: ArcRun, fs: FileSystem | None=None) -> LDNode:
38
+ return RunConversion_composeRun_Z8CC08AC(this, fs)
39
+
40
+
41
+ def ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcRun:
42
+ return RunConversion_decomposeRun_Z6839B9E8(a, graph, context)
43
+
44
+
45
+ def ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(this: ArcInvestigation, fs: FileSystem | None=None, ignore_broken_wr: bool | None=None) -> LDNode:
46
+ return InvestigationConversion_composeInvestigation_Z284BC0AC(this, fs, ignore_broken_wr)
47
+
48
+
49
+ def ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcInvestigation:
50
+ return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, graph, context)
51
+
52
+
53
+ def ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcAssay:
54
+ return AssayConversion_decomposeAssay_Z6839B9E8(a, graph, context)
55
+
56
+
57
+ def ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8(a: ArcAssay) -> LDNode:
58
+ return AssayConversion_composeAssay_Z5C53FD5C(a)
59
+
60
+
61
+ def ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcStudy:
62
+ return StudyConversion_decomposeStudy_Z6839B9E8(a, graph, context)
63
+
64
+
65
+ def ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E(a: ArcStudy) -> LDNode:
66
+ return StudyConversion_composeStudy_ZFE0E38E(a)
67
+
68
+
69
+ def ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcWorkflow:
70
+ return WorkflowConversion_decomposeWorkflow_Z6839B9E8(a, graph, context)
71
+
72
+
73
+ def ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E(a: ArcWorkflow) -> LDNode:
74
+ return WorkflowConversion_composeWorkflow_42450E6E(a)
75
+
76
+
77
+ def ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcRun:
78
+ return RunConversion_decomposeRun_Z6839B9E8(a, graph, context)
79
+
80
+
81
+ def ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8(a: ArcRun) -> LDNode:
82
+ return RunConversion_composeRun_Z8CC08AC(a)
83
+
84
+
85
+ def ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcInvestigation:
86
+ return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, graph, context)
87
+
88
+
89
+ def ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF(a: ArcInvestigation) -> LDNode:
90
+ return InvestigationConversion_composeInvestigation_Z284BC0AC(a)
91
+
92
+
93
+ def _expr4424() -> TypeInfo:
94
+ return class_type("ARCtrl.Conversion.TypeExtensions.Conversion", None, Conversion)
95
+
96
+
97
+ class Conversion:
98
+ @staticmethod
99
+ def arc_assay_to_dataset(a: ArcAssay, fs: FileSystem | None=None) -> LDNode:
100
+ return ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C(a, fs)
101
+
102
+ @staticmethod
103
+ def dataset_to_arc_assay(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcAssay:
104
+ return ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8(a, graph, context)
105
+
106
+ @staticmethod
107
+ def arc_study_to_dataset(a: ArcStudy, fs: FileSystem | None=None) -> LDNode:
108
+ return ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C(a, fs)
109
+
110
+ @staticmethod
111
+ def dataset_to_arc_study(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcStudy:
112
+ return ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a, graph, context)
113
+
114
+ @staticmethod
115
+ def arc_workflow_to_dataset(a: ArcWorkflow, fs: FileSystem | None=None) -> LDNode:
116
+ return ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C(a, fs)
117
+
118
+ @staticmethod
119
+ def dataset_to_arc_workflow(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcWorkflow:
120
+ return ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8(a, graph, context)
121
+
122
+ @staticmethod
123
+ def arc_run_to_dataset(a: ArcRun, fs: FileSystem | None=None) -> LDNode:
124
+ return ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C(a, fs)
125
+
126
+ @staticmethod
127
+ def dataset_to_arc_run(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcRun:
128
+ return ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8(a, graph, context)
129
+
130
+ @staticmethod
131
+ def arc_investigation_to_dataset(a: ArcInvestigation, fs: FileSystem | None=None, ignore_broken_wr: bool | None=None) -> LDNode:
132
+ return ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(a, fs, ignore_broken_wr)
133
+
134
+ @staticmethod
135
+ def dataset_to_arc_investigation(a: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> ArcInvestigation:
136
+ return ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, graph, context)
137
+
138
+
139
+ Conversion_reflection = _expr4424
140
+
141
+ __all__ = ["ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C", "ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8", "ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C", "ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8", "ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C", "ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8", "ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C", "ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8", "ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B", "ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8", "ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8", "ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8", "ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8", "ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E", "ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8", "ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E", "ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8", "ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8", "ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8", "ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF", "Conversion_reflection"]
142
+
@@ -0,0 +1,76 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import (Any, TypeVar)
4
+ from .fable_modules.fable_library.array_ import append
5
+ from .fable_modules.fable_library.async_ import (sequential, catch_async)
6
+ from .fable_modules.fable_library.async_builder import (singleton, Async)
7
+ from .fable_modules.fable_library.result import FSharpResult_2
8
+ from .fable_modules.fable_library.types import (Array, to_string)
9
+ from .fable_modules.fable_library.util import (IEnumerator, get_enumerator, IEnumerable_1)
10
+
11
+ _U = TypeVar("_U")
12
+
13
+ _T = TypeVar("_T")
14
+
15
+ __A = TypeVar("__A")
16
+
17
+ __B = TypeVar("__B")
18
+
19
+ def start_sequential(starter_f: Callable[[_T], Async[_U]], tasks: IEnumerable_1[Any]) -> Async[Array[Any]]:
20
+ def loop(en: IEnumerator[_T], starter_f: Any=starter_f, tasks: Any=tasks) -> Async[Array[_U]]:
21
+ def _arrow4187(__unit: None=None, en: Any=en) -> Async[Array[_U]]:
22
+ def _arrow4186(_arg: _U | None=None) -> Async[Array[_U]]:
23
+ def _arrow4185(_arg_1: Array[_U]) -> Async[Array[_U]]:
24
+ return singleton.Return(append([_arg], _arg_1, None))
25
+
26
+ return singleton.Bind(loop(en), _arrow4185)
27
+
28
+ return singleton.Bind(starter_f(en.System_Collections_Generic_IEnumerator_1_get_Current()), _arrow4186) if en.System_Collections_IEnumerator_MoveNext() else singleton.Return([])
29
+
30
+ return singleton.Delay(_arrow4187)
31
+
32
+ return loop(get_enumerator(tasks))
33
+
34
+
35
+ def all(tasks: IEnumerable_1[Async[Any]]) -> Async[Array[Any]]:
36
+ return sequential(tasks)
37
+
38
+
39
+ def map(f: Callable[[__A], __B], v: Async[Any]) -> Async[Any]:
40
+ def _arrow4189(__unit: None=None, f: Any=f, v: Any=v) -> Async[__B]:
41
+ def _arrow4188(_arg: __A | None=None) -> Async[__B]:
42
+ return singleton.Return(f(_arg))
43
+
44
+ return singleton.Bind(v, _arrow4188)
45
+
46
+ return singleton.Delay(_arrow4189)
47
+
48
+
49
+ def as_async(v: Async[Any]) -> Async[Any]:
50
+ return v
51
+
52
+
53
+ def catch_with(f: Callable[[Exception], _T], p: Async[Any]) -> Async[Any]:
54
+ def _arrow4191(__unit: None=None, f: Any=f, p: Any=p) -> Async[_T]:
55
+ def _arrow4190(_arg: Any) -> Async[_T]:
56
+ r: Any = _arg
57
+ return singleton.Return(f(r.fields[0])) if (r.tag == 1) else singleton.Return(r.fields[0])
58
+
59
+ return singleton.Bind(catch_async(p), _arrow4190)
60
+
61
+ return singleton.Delay(_arrow4191)
62
+
63
+
64
+ def catch_as_result(p: Async[Any]) -> Async[FSharpResult_2[Any, str]]:
65
+ def _arrow4193(__unit: None=None, p: Any=p) -> Async[FSharpResult_2[_T, str]]:
66
+ def _arrow4192(_arg: Any) -> Async[FSharpResult_2[_T, str]]:
67
+ r: Any = _arg
68
+ return singleton.Return(FSharpResult_2(1, to_string(r.fields[0]))) if (r.tag == 1) else singleton.Return(FSharpResult_2(0, r.fields[0]))
69
+
70
+ return singleton.Bind(catch_async(p), _arrow4192)
71
+
72
+ return singleton.Delay(_arrow4193)
73
+
74
+
75
+ __all__ = ["start_sequential", "all", "map", "as_async", "catch_with", "catch_as_result"]
76
+