mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_prompt_eval.py +865 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/related_notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/related_notes/related_notes.py +1920 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/related_notes/related_notes_headless.py +1186 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/plan_attestation.py +148 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/specialist_receipts.py +360 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/specialist_runtime.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/specialist_task_runner.py +2470 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/style/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/style/style.py +1952 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/agents.py +1767 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/alias_projection.py +331 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/link_terms.py +151 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/audit.py +201 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/migration.py +314 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/link_git.py +110 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/link_runtime_artifact.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/note_plan.py +75 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/paths.py +114 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/public_report.py +53 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/publish.py +111 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/raw_coverage.py +217 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes.py +136 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_headless.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_runtime.py +395 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/schema_registry.py +637 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/specialist.py +432 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/status.py +62 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/style_rewrite.py +568 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/vocabulary_ingestion.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_blockers.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_guardrails.py +637 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_outcomes.py +121 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_receipts.py +100 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__main__.py +4 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/candidates.py +193 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/cli.py +189 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/gemini.py +220 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/inputs.py +120 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/models.py +34 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/parsing.py +48 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/prompts.py +216 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/quality.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/reporting.py +24 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/runner.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/utils.py +39 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/vault_guard_bridge.py +17 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_context_packets.py +454 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_decision_projection.py +133 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_effects.py +1260 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_fsm.py +2768 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_machine.py +1588 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_plan.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_primary_objective.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_problem.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_receipt_evidence.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_states.py +290 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_user_report.py +342 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/health.py +6332 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_fsm.py +1119 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_git.py +638 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_machine.py +1106 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_retry_governance.py +374 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_runtime_result.py +485 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_triggers.py +183 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/linking.py +2758 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/reference_repair.py +718 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/related_notes_fsm.py +1855 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/link_related_machine.py +834 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_fsm.py +1592 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_machine.py +3097 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_primary_objective.py +28 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_runtime_result.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/performance.py +97 -0
- package/.opencode/mednotes/src/mednotes/kernel/__init__.py +6 -0
- package/.opencode/mednotes/src/mednotes/kernel/agent_directive.py +336 -0
- package/.opencode/mednotes/src/mednotes/kernel/base.py +51 -0
- package/.opencode/mednotes/src/mednotes/kernel/blockers.py +39 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_executor.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_intent.py +69 -0
- package/.opencode/mednotes/src/mednotes/kernel/effects.py +160 -0
- package/.opencode/mednotes/src/mednotes/kernel/errors.py +38 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_event.py +35 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_model.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_transition_result.py +75 -0
- package/.opencode/mednotes/src/mednotes/kernel/guardrails.py +188 -0
- package/.opencode/mednotes/src/mednotes/kernel/progress.py +319 -0
- package/.opencode/mednotes/src/mednotes/kernel/public_report.py +346 -0
- package/.opencode/mednotes/src/mednotes/kernel/state_machine.py +164 -0
- package/.opencode/mednotes/src/mednotes/kernel/workflow.py +619 -0
- package/.opencode/mednotes/src/mednotes/platform/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/platform/backup_policy.py +382 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/__init__.py +62 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/contracts.py +83 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/core.py +4168 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/integrity.py +989 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/operational_contract.py +2293 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry.py +875 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry_config.py +65 -0
- package/.opencode/mednotes/src/mednotes/platform/opencode_runtime_config.py +182 -0
- package/.opencode/mednotes/src/mednotes/platform/paths/__init__.py +1560 -0
- package/.opencode/mednotes/src/mednotes/platform/secrets.py +89 -0
- package/.opencode/mednotes/src/mednotes/platform/user_config.py +103 -0
- package/.opencode/mednotes/src/mednotes/platform/vault_guard.py +214 -0
- package/.opencode/mednotes/uv.lock +932 -0
- package/.opencode/mednotes.generated.json +395 -0
- package/.opencode/opencode.json +31 -0
- package/.opencode/plugins/mednotes-fsm.mjs +7 -0
- package/.opencode/plugins/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/plugins/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/plugins/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/plugins/mednotes_hook/cli.mjs +143 -0
- package/.opencode/plugins/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/plugins/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/plugins/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/plugins/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/plugins/mednotes_hook/retention.mjs +114 -0
- package/.opencode/plugins/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/plugins/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/plugins/mednotes_hook/vault_guard.mjs +624 -0
- package/AGENTS.md +57 -0
- package/README.md +194 -0
- package/adapters/antigravity/agents.json +80 -0
- package/adapters/antigravity/templates/med-chat-triager.md +214 -0
- package/adapters/antigravity/templates/med-flashcard-maker.md +72 -0
- package/adapters/antigravity/templates/med-knowledge-architect.md +241 -0
- package/adapters/antigravity/templates/med-link-graph-curator.md +187 -0
- package/adapters/antigravity/templates/med-publish-guard.md +71 -0
- package/adapters/gemini-cli/gemini-extension.json +14 -0
- package/adapters/gemini-cli/package.json +15 -0
- package/adapters/gemini-cli/pyproject.toml +48 -0
- package/bin/mednotes-opencode.mjs +155 -0
- package/contracts/agents.json +116 -0
- package/core/agents/med-chat-triager.md +197 -0
- package/core/agents/med-flashcard-maker.md +56 -0
- package/core/agents/med-knowledge-architect.md +224 -0
- package/core/agents/med-link-graph-curator.md +171 -0
- package/core/agents/med-publish-guard.md +55 -0
- package/core/commands/flashcards.toml +22 -0
- package/core/commands/mednotes/create.toml +22 -0
- package/core/commands/mednotes/enrich.toml +24 -0
- package/core/commands/mednotes/fix-wiki.toml +24 -0
- package/core/commands/mednotes/history.toml +19 -0
- package/core/commands/mednotes/link-body.toml +22 -0
- package/core/commands/mednotes/link-related.toml +24 -0
- package/core/commands/mednotes/link.toml +24 -0
- package/core/commands/mednotes/pdf-library.toml +24 -0
- package/core/commands/mednotes/process-chats.toml +20 -0
- package/core/commands/mednotes/setup.toml +18 -0
- package/core/commands/mednotes/status.toml +24 -0
- package/core/commands/mednotes/telemetry.toml +24 -0
- package/core/commands/report.toml +23 -0
- package/core/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/core/skills/create-medical-flashcards/SKILL.md +113 -0
- package/core/skills/create-medical-note/SKILL.md +90 -0
- package/core/skills/enrich-medical-note/SKILL.md +120 -0
- package/core/skills/fix-medical-wiki/SKILL.md +559 -0
- package/core/skills/link-medical-wiki/SKILL.md +224 -0
- package/core/skills/obsidian-cli/SKILL.md +118 -0
- package/core/skills/obsidian-markdown/SKILL.md +207 -0
- package/core/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/core/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/core/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/core/skills/obsidian-ops/SKILL.md +136 -0
- package/core/skills/pdf-library/SKILL.md +45 -0
- package/core/skills/process-medical-chats/SKILL.md +246 -0
- package/core/skills/workflow-report/SKILL.md +100 -0
- package/package.json +45 -0
|
@@ -0,0 +1,264 @@
|
|
|
1
|
+
"""Deterministic style fixes for Wiki_Medicina notes."""
|
|
2
|
+
from __future__ import annotations
|
|
3
|
+
|
|
4
|
+
import re
|
|
5
|
+
from pathlib import Path
|
|
6
|
+
from types import SimpleNamespace
|
|
7
|
+
from typing import Any
|
|
8
|
+
|
|
9
|
+
from mednotes.domains.wiki.capabilities.notes.note_style.frontmatter import (
|
|
10
|
+
FrontmatterYamlUnavailable,
|
|
11
|
+
normalize_wiki_frontmatter,
|
|
12
|
+
)
|
|
13
|
+
from mednotes.domains.wiki.capabilities.notes.note_style.models import STYLE_REPORT_SCHEMA, WIKI_INDEX_LINK
|
|
14
|
+
from mednotes.domains.wiki.capabilities.notes.note_style.tables import (
|
|
15
|
+
escape_wikilink_alias_pipes_in_tables,
|
|
16
|
+
normalize_markdown_tables,
|
|
17
|
+
)
|
|
18
|
+
from mednotes.domains.wiki.capabilities.notes.note_style.validate import index_style_report, validate_note_style
|
|
19
|
+
from mednotes.domains.wiki.capabilities.notes.provenance import (
|
|
20
|
+
ChatProvenance,
|
|
21
|
+
apply_note_provenance,
|
|
22
|
+
classify_note_provenance,
|
|
23
|
+
)
|
|
24
|
+
from mednotes.domains.wiki.capabilities.vocabulary.link_terms import is_index_note_content, is_index_target
|
|
25
|
+
from mednotes.kernel.base import JsonObject
|
|
26
|
+
|
|
27
|
+
_HEADING_EMOJI_RE = re.compile(r"^[\U0001F300-\U0001FAFF\u2600-\u27BF]")
|
|
28
|
+
_LOCAL_PATH_RE = re.compile(r"(?:[A-Za-z]:\\|/Users/|/home/|/var/|/tmp/)")
|
|
29
|
+
_MALFORMED_ALIAS_RE = re.compile(r"\[\[([^\]\|]+)\]\]([A-ZÁÉÍÓÚÇ]{2,12})\b")
|
|
30
|
+
_CALLOUT_START_RE = re.compile(r"^>\s*\[![A-Za-z]+]")
|
|
31
|
+
|
|
32
|
+
_HEADING_EMOJI_RULES: tuple[tuple[re.Pattern[str], str], ...] = (
|
|
33
|
+
(re.compile(r"quando\s+(pensar|suspeitar|usar)", re.I), "🎯"),
|
|
34
|
+
(re.compile(r"(ideia\s+central|fisiopatologia|mecanismo|etiologia|anatomia|fisiologia)", re.I), "🧠"),
|
|
35
|
+
(re.compile(r"(diagn[oó]stico|exames?|achados?|avalia[cç][aã]o)", re.I), "🔎"),
|
|
36
|
+
(re.compile(r"(conduta|tratamento|manejo|terap[eê]utica)", re.I), "🩺"),
|
|
37
|
+
(re.compile(r"(estratifica[cç][aã]o|classifica[cç][aã]o|risco|escore|componentes)", re.I), "⚖️"),
|
|
38
|
+
(re.compile(r"(pegadinhas?|armadilhas?|pontos?\s+de\s+prova)", re.I), "⚠️"),
|
|
39
|
+
(re.compile(r"fechamento", re.I), "🏁"),
|
|
40
|
+
(re.compile(r"notas?\s+relacionadas?", re.I), "🔗"),
|
|
41
|
+
)
|
|
42
|
+
|
|
43
|
+
|
|
44
|
+
def _optional_text(value: str | None) -> str:
|
|
45
|
+
return value.strip() if isinstance(value, str) else ""
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
def fix_note_style(
|
|
49
|
+
content: str,
|
|
50
|
+
*,
|
|
51
|
+
title: str,
|
|
52
|
+
raw_meta: dict[str, str] | None = None,
|
|
53
|
+
path: str | None = None,
|
|
54
|
+
) -> tuple[str, dict[str, Any]]:
|
|
55
|
+
if _is_operational_index_note(content, title=title, path=path):
|
|
56
|
+
return content, index_style_report(content, title=title, path=path)
|
|
57
|
+
fixed = content.replace("\r\n", "\n").replace("\r", "\n")
|
|
58
|
+
fixes: list[str] = []
|
|
59
|
+
|
|
60
|
+
stripped_lines = [line.rstrip() for line in fixed.split("\n")]
|
|
61
|
+
stripped = "\n".join(stripped_lines)
|
|
62
|
+
if stripped != fixed:
|
|
63
|
+
fixed = stripped
|
|
64
|
+
fixes.append("trim_trailing_whitespace")
|
|
65
|
+
|
|
66
|
+
try:
|
|
67
|
+
frontmatter_fixed, frontmatter_fixes = normalize_wiki_frontmatter(fixed, title=title, preserve_keys={"chats"})
|
|
68
|
+
except FrontmatterYamlUnavailable as exc:
|
|
69
|
+
return fixed, _blocked_report(title=title, path=path, exc=exc, fixes=fixes)
|
|
70
|
+
if frontmatter_fixed != fixed:
|
|
71
|
+
fixed = frontmatter_fixed
|
|
72
|
+
fixes.extend(frontmatter_fixes or ["normalize_frontmatter"])
|
|
73
|
+
|
|
74
|
+
heading_fixed = _fix_heading_emojis(fixed)
|
|
75
|
+
if heading_fixed != fixed:
|
|
76
|
+
fixed = heading_fixed
|
|
77
|
+
fixes.append("add_known_heading_emojis")
|
|
78
|
+
|
|
79
|
+
alias_fixed = _fix_malformed_alias_links(fixed)
|
|
80
|
+
if alias_fixed != fixed:
|
|
81
|
+
fixed = alias_fixed
|
|
82
|
+
fixes.append("fix_wikilink_alias_suffixes")
|
|
83
|
+
|
|
84
|
+
table_link_fixed = escape_wikilink_alias_pipes_in_tables(fixed)
|
|
85
|
+
if table_link_fixed != fixed:
|
|
86
|
+
fixed = table_link_fixed
|
|
87
|
+
fixes.append("escape_wikilink_pipes_in_tables")
|
|
88
|
+
|
|
89
|
+
table_fixed = normalize_markdown_tables(fixed)
|
|
90
|
+
if table_fixed != fixed:
|
|
91
|
+
fixed = table_fixed
|
|
92
|
+
fixes.append("normalize_markdown_tables")
|
|
93
|
+
|
|
94
|
+
spacing_fixed = _normalize_blank_lines(fixed)
|
|
95
|
+
if spacing_fixed != fixed:
|
|
96
|
+
fixed = spacing_fixed
|
|
97
|
+
fixes.append("normalize_blank_lines")
|
|
98
|
+
|
|
99
|
+
footer_links_fixed = _remove_trailing_invalid_footer_links(fixed)
|
|
100
|
+
if footer_links_fixed != fixed:
|
|
101
|
+
fixed = footer_links_fixed
|
|
102
|
+
fixes.append("remove_invalid_footer_links")
|
|
103
|
+
|
|
104
|
+
try:
|
|
105
|
+
provenance_fixed = _fix_provenance(fixed, raw_meta or {}, title=title)
|
|
106
|
+
except FrontmatterYamlUnavailable as exc:
|
|
107
|
+
return fixed, _blocked_report(title=title, path=path, exc=exc, fixes=fixes)
|
|
108
|
+
if provenance_fixed != fixed:
|
|
109
|
+
fixed = provenance_fixed
|
|
110
|
+
fixes.append("normalize_provenance")
|
|
111
|
+
|
|
112
|
+
if not fixed.endswith("\n"):
|
|
113
|
+
fixed += "\n"
|
|
114
|
+
fixes.append("ensure_trailing_newline")
|
|
115
|
+
|
|
116
|
+
report = validate_note_style(
|
|
117
|
+
fixed,
|
|
118
|
+
title=title,
|
|
119
|
+
raw_meta=raw_meta,
|
|
120
|
+
path=path,
|
|
121
|
+
fixes_applied=fixes,
|
|
122
|
+
)
|
|
123
|
+
return fixed, report
|
|
124
|
+
|
|
125
|
+
|
|
126
|
+
def _is_operational_index_note(content: str, *, title: str, path: str | None = None) -> bool:
|
|
127
|
+
stem = Path(path).stem if path else title
|
|
128
|
+
return is_index_target(stem) or is_index_note_content(content)
|
|
129
|
+
|
|
130
|
+
|
|
131
|
+
def _blocked_report(
|
|
132
|
+
*,
|
|
133
|
+
title: str,
|
|
134
|
+
path: str | None,
|
|
135
|
+
exc: FrontmatterYamlUnavailable,
|
|
136
|
+
fixes: list[str],
|
|
137
|
+
) -> JsonObject:
|
|
138
|
+
return {
|
|
139
|
+
"schema": STYLE_REPORT_SCHEMA,
|
|
140
|
+
"path": path,
|
|
141
|
+
"title": title,
|
|
142
|
+
"ok": False,
|
|
143
|
+
"errors": [{"code": exc.blocked_reason, "message": exc.next_action, "severity": "error"}],
|
|
144
|
+
"warnings": [],
|
|
145
|
+
"fixes_applied": fixes,
|
|
146
|
+
"requires_llm_rewrite": False,
|
|
147
|
+
"rewrite_prompt": None,
|
|
148
|
+
"frontmatter_present": False,
|
|
149
|
+
"status": "blocked",
|
|
150
|
+
"blocked_reason": exc.blocked_reason,
|
|
151
|
+
"next_action": exc.next_action,
|
|
152
|
+
}
|
|
153
|
+
|
|
154
|
+
|
|
155
|
+
def _fix_heading_emojis(text: str) -> str:
|
|
156
|
+
fixed_lines: list[str] = []
|
|
157
|
+
for line in text.splitlines():
|
|
158
|
+
match = re.match(r"^(##)\s+(.+?)\s*$", line)
|
|
159
|
+
if not match:
|
|
160
|
+
fixed_lines.append(line)
|
|
161
|
+
continue
|
|
162
|
+
heading = match.group(2).strip()
|
|
163
|
+
if _HEADING_EMOJI_RE.match(heading):
|
|
164
|
+
fixed_lines.append(line)
|
|
165
|
+
continue
|
|
166
|
+
emoji = _emoji_for_heading(heading)
|
|
167
|
+
fixed_lines.append(f"## {emoji} {heading}" if emoji else line)
|
|
168
|
+
return "\n".join(fixed_lines)
|
|
169
|
+
|
|
170
|
+
|
|
171
|
+
def _emoji_for_heading(heading: str) -> str:
|
|
172
|
+
for pattern, emoji in _HEADING_EMOJI_RULES:
|
|
173
|
+
if pattern.search(heading):
|
|
174
|
+
return emoji
|
|
175
|
+
return ""
|
|
176
|
+
|
|
177
|
+
|
|
178
|
+
def _fix_malformed_alias_links(text: str) -> str:
|
|
179
|
+
return _MALFORMED_ALIAS_RE.sub(r"[[\1|\2]]", text)
|
|
180
|
+
|
|
181
|
+
|
|
182
|
+
def _normalize_blank_lines(text: str) -> str:
|
|
183
|
+
text = re.sub(r"\n{3,}", "\n\n", text)
|
|
184
|
+
text = re.sub(r"\n+(## 🔗 Notas Relacionadas)", r"\n\n\1", text)
|
|
185
|
+
return _normalize_callout_spacing(text)
|
|
186
|
+
|
|
187
|
+
|
|
188
|
+
def _normalize_callout_spacing(text: str) -> str:
|
|
189
|
+
normalized: list[str] = []
|
|
190
|
+
for line in text.splitlines():
|
|
191
|
+
stripped = line.strip()
|
|
192
|
+
is_callout_start = bool(_CALLOUT_START_RE.match(stripped))
|
|
193
|
+
is_quote = stripped.startswith(">")
|
|
194
|
+
previous_is_quote = bool(normalized and normalized[-1].lstrip().startswith(">"))
|
|
195
|
+
if is_callout_start and normalized and normalized[-1].strip():
|
|
196
|
+
normalized.append("")
|
|
197
|
+
elif stripped and not is_quote and previous_is_quote:
|
|
198
|
+
normalized.append("")
|
|
199
|
+
normalized.append(line)
|
|
200
|
+
return "\n".join(normalized)
|
|
201
|
+
|
|
202
|
+
|
|
203
|
+
def _fix_provenance(text: str, raw_meta: dict[str, str], *, title: str) -> str:
|
|
204
|
+
state = classify_note_provenance(text)
|
|
205
|
+
chat = _chat_from_raw_meta(raw_meta)
|
|
206
|
+
if state.status == "already_canonical":
|
|
207
|
+
return text
|
|
208
|
+
if state.status != "migratable" and chat is None:
|
|
209
|
+
return text
|
|
210
|
+
chats = [chat] if chat is not None else []
|
|
211
|
+
result = apply_note_provenance(
|
|
212
|
+
text,
|
|
213
|
+
chats=chats,
|
|
214
|
+
chat_lookup=_RawMetaLookup(raw_meta, fallback_title=title),
|
|
215
|
+
)
|
|
216
|
+
return str(result["text"])
|
|
217
|
+
|
|
218
|
+
|
|
219
|
+
def _remove_trailing_invalid_footer_links(text: str) -> str:
|
|
220
|
+
lines = text.rstrip().splitlines()
|
|
221
|
+
changed = True
|
|
222
|
+
while changed and lines:
|
|
223
|
+
changed = False
|
|
224
|
+
tail_start = max(0, len(lines) - 8)
|
|
225
|
+
for idx in range(len(lines) - 1, tail_start - 1, -1):
|
|
226
|
+
stripped = lines[idx].strip()
|
|
227
|
+
if (
|
|
228
|
+
stripped == WIKI_INDEX_LINK
|
|
229
|
+
or "_Índice_Medicina" in stripped
|
|
230
|
+
or "Indice_Medicina" in stripped
|
|
231
|
+
or stripped.startswith("obsidian://")
|
|
232
|
+
or bool(_LOCAL_PATH_RE.search(stripped))
|
|
233
|
+
):
|
|
234
|
+
lines.pop(idx)
|
|
235
|
+
changed = True
|
|
236
|
+
while lines and not lines[-1].strip():
|
|
237
|
+
lines.pop()
|
|
238
|
+
return "\n".join(lines).rstrip() + "\n"
|
|
239
|
+
|
|
240
|
+
|
|
241
|
+
def _chat_from_raw_meta(raw_meta: dict[str, str]) -> ChatProvenance | None:
|
|
242
|
+
fonte_id = _optional_text(raw_meta.get("fonte_id")).strip("/")
|
|
243
|
+
if not fonte_id:
|
|
244
|
+
return None
|
|
245
|
+
return ChatProvenance(
|
|
246
|
+
fonte_id,
|
|
247
|
+
date_created=_optional_text(raw_meta.get("date_created")),
|
|
248
|
+
date_exported=_optional_text(raw_meta.get("exported_at")) or _optional_text(raw_meta.get("date_exported")),
|
|
249
|
+
)
|
|
250
|
+
|
|
251
|
+
|
|
252
|
+
class _RawMetaLookup:
|
|
253
|
+
def __init__(self, raw_meta: dict[str, str], *, fallback_title: str) -> None:
|
|
254
|
+
self.raw_meta = raw_meta
|
|
255
|
+
self.fallback_title = fallback_title
|
|
256
|
+
|
|
257
|
+
def lookup_chat(self, chat_id: str) -> SimpleNamespace:
|
|
258
|
+
return SimpleNamespace(
|
|
259
|
+
id=chat_id,
|
|
260
|
+
title=str(self.raw_meta.get("titulo_triagem") or self.fallback_title or f"Chat {chat_id[:8]}"),
|
|
261
|
+
url=f"https://gemini.google.com/app/{chat_id}",
|
|
262
|
+
date_created=_optional_text(self.raw_meta.get("date_created")),
|
|
263
|
+
date_exported=_optional_text(self.raw_meta.get("exported_at")) or _optional_text(self.raw_meta.get("date_exported")),
|
|
264
|
+
)
|
package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py
ADDED
|
@@ -0,0 +1,435 @@
|
|
|
1
|
+
"""Frontmatter and provenance helpers for Wiki_Medicina notes."""
|
|
2
|
+
from __future__ import annotations
|
|
3
|
+
|
|
4
|
+
import json
|
|
5
|
+
import re
|
|
6
|
+
from copy import deepcopy
|
|
7
|
+
from dataclasses import dataclass
|
|
8
|
+
from functools import lru_cache
|
|
9
|
+
from pathlib import Path
|
|
10
|
+
from typing import Any
|
|
11
|
+
|
|
12
|
+
try: # Keep the CLI usable even in very small extension runtimes.
|
|
13
|
+
import yaml
|
|
14
|
+
except ImportError: # pragma: no cover - exercised only without project deps
|
|
15
|
+
yaml = None # type: ignore[assignment]
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
_FRONTMATTER_DELIM = "---"
|
|
19
|
+
_KEY_RE = re.compile(r"^([A-Za-z0-9_-]+)\s*:\s*(.*)$")
|
|
20
|
+
|
|
21
|
+
_ALIAS_KEYS = {
|
|
22
|
+
"alias",
|
|
23
|
+
"aliases",
|
|
24
|
+
"sinonimo",
|
|
25
|
+
"sinonimos",
|
|
26
|
+
"sinônimo",
|
|
27
|
+
"sinônimos",
|
|
28
|
+
"sigla",
|
|
29
|
+
"siglas",
|
|
30
|
+
"acronym",
|
|
31
|
+
"acronyms",
|
|
32
|
+
"termo",
|
|
33
|
+
"termos",
|
|
34
|
+
"term",
|
|
35
|
+
"terms",
|
|
36
|
+
}
|
|
37
|
+
_TAG_KEYS = {"tag", "tags"}
|
|
38
|
+
_ENRICHER_KEYS = {
|
|
39
|
+
"images_enriched",
|
|
40
|
+
"images_enriched_at",
|
|
41
|
+
"image_count",
|
|
42
|
+
"image_sources",
|
|
43
|
+
}
|
|
44
|
+
SOURCE_METADATA_KEYS = frozenset(
|
|
45
|
+
{
|
|
46
|
+
"source",
|
|
47
|
+
"sources",
|
|
48
|
+
"source_type",
|
|
49
|
+
"source_kind",
|
|
50
|
+
"source_url",
|
|
51
|
+
"source_urls",
|
|
52
|
+
"source_title",
|
|
53
|
+
"source_author",
|
|
54
|
+
"source_channel",
|
|
55
|
+
"source_platform",
|
|
56
|
+
"source_id",
|
|
57
|
+
"source_published_at",
|
|
58
|
+
"source_accessed_at",
|
|
59
|
+
"source_duration",
|
|
60
|
+
"source_notes",
|
|
61
|
+
}
|
|
62
|
+
)
|
|
63
|
+
OPERATIONAL_WIKI_TAGS = frozenset({"anki", "revisar", "indice", "índice"})
|
|
64
|
+
FRONTMATTER_YAML_BLOCKED_REASON = "frontmatter_yaml_unavailable"
|
|
65
|
+
FRONTMATTER_YAML_NEXT_ACTION = "Rodar /mednotes:setup para preparar o ambiente e repetir o workflow."
|
|
66
|
+
|
|
67
|
+
|
|
68
|
+
class FrontmatterYamlUnavailable(RuntimeError):
|
|
69
|
+
blocked_reason = FRONTMATTER_YAML_BLOCKED_REASON
|
|
70
|
+
next_action = FRONTMATTER_YAML_NEXT_ACTION
|
|
71
|
+
|
|
72
|
+
def __init__(self, message: str = "PyYAML is required to preserve structured Wiki frontmatter.") -> None:
|
|
73
|
+
super().__init__(message)
|
|
74
|
+
|
|
75
|
+
|
|
76
|
+
@dataclass(frozen=True)
|
|
77
|
+
class FrontmatterBlock:
|
|
78
|
+
key: str
|
|
79
|
+
lines: tuple[str, ...]
|
|
80
|
+
|
|
81
|
+
|
|
82
|
+
def split_frontmatter(text: str) -> tuple[str | None, str]:
|
|
83
|
+
lines = text.splitlines(keepends=True)
|
|
84
|
+
if not lines or lines[0].strip() != _FRONTMATTER_DELIM:
|
|
85
|
+
return None, text
|
|
86
|
+
for idx in range(1, len(lines)):
|
|
87
|
+
if lines[idx].strip() == _FRONTMATTER_DELIM:
|
|
88
|
+
return "".join(lines[1:idx]), "".join(lines[idx + 1 :])
|
|
89
|
+
return None, text
|
|
90
|
+
|
|
91
|
+
|
|
92
|
+
def parse_frontmatter(text: str) -> dict[str, str]:
|
|
93
|
+
frontmatter, _body = split_frontmatter(text)
|
|
94
|
+
if frontmatter is None:
|
|
95
|
+
return {}
|
|
96
|
+
parsed: dict[str, str] = {}
|
|
97
|
+
for line in frontmatter.splitlines():
|
|
98
|
+
match = _KEY_RE.match(line.strip())
|
|
99
|
+
if match:
|
|
100
|
+
parsed[match.group(1)] = _strip_quotes(match.group(2))
|
|
101
|
+
return parsed
|
|
102
|
+
|
|
103
|
+
|
|
104
|
+
def load_frontmatter_yaml(text: str) -> dict[str, object]:
|
|
105
|
+
frontmatter, _body = split_frontmatter(text)
|
|
106
|
+
if frontmatter is None:
|
|
107
|
+
return {}
|
|
108
|
+
return deepcopy(_load_frontmatter_yaml_cached(frontmatter))
|
|
109
|
+
|
|
110
|
+
|
|
111
|
+
@lru_cache(maxsize=4096)
|
|
112
|
+
def _load_frontmatter_yaml_cached(frontmatter: str) -> dict[str, object]:
|
|
113
|
+
if yaml is None:
|
|
114
|
+
raise FrontmatterYamlUnavailable
|
|
115
|
+
try:
|
|
116
|
+
loaded = yaml.safe_load(frontmatter) or {}
|
|
117
|
+
except Exception as exc:
|
|
118
|
+
raise FrontmatterYamlUnavailable(f"Could not parse Wiki frontmatter as YAML: {exc}") from exc
|
|
119
|
+
if not isinstance(loaded, dict):
|
|
120
|
+
return {}
|
|
121
|
+
return {str(key): value for key, value in loaded.items()}
|
|
122
|
+
|
|
123
|
+
|
|
124
|
+
def dump_frontmatter_yaml(data: dict[str, object]) -> str:
|
|
125
|
+
if yaml is None:
|
|
126
|
+
raise FrontmatterYamlUnavailable
|
|
127
|
+
class _IndentedSafeDumper(yaml.SafeDumper): # type: ignore[misc, valid-type]
|
|
128
|
+
def increase_indent(self, flow: bool = False, indentless: bool = False) -> None:
|
|
129
|
+
super().increase_indent(flow, False)
|
|
130
|
+
|
|
131
|
+
return yaml.dump(
|
|
132
|
+
data,
|
|
133
|
+
Dumper=_IndentedSafeDumper,
|
|
134
|
+
allow_unicode=True,
|
|
135
|
+
default_flow_style=False,
|
|
136
|
+
sort_keys=False,
|
|
137
|
+
)
|
|
138
|
+
|
|
139
|
+
|
|
140
|
+
def _strip_quotes(value: str) -> str:
|
|
141
|
+
value = value.strip()
|
|
142
|
+
if len(value) >= 2 and value[0] == value[-1] and value[0] in {"'", '"'}:
|
|
143
|
+
return value[1:-1]
|
|
144
|
+
return value
|
|
145
|
+
|
|
146
|
+
|
|
147
|
+
def raw_meta_from_file(raw_file: Path | None) -> dict[str, str]:
|
|
148
|
+
if raw_file is None:
|
|
149
|
+
return {}
|
|
150
|
+
return parse_frontmatter(raw_file.read_text(encoding="utf-8"))
|
|
151
|
+
|
|
152
|
+
|
|
153
|
+
def infer_title(content: str, path: Path) -> str:
|
|
154
|
+
_frontmatter, body = split_frontmatter(content)
|
|
155
|
+
match = re.search(r"(?m)^#\s+(.+?)\s*$", body)
|
|
156
|
+
return match.group(1).strip() if match else path.stem
|
|
157
|
+
|
|
158
|
+
|
|
159
|
+
def normalize_wiki_frontmatter(
|
|
160
|
+
text: str,
|
|
161
|
+
*,
|
|
162
|
+
title: str | None = None,
|
|
163
|
+
preserve_keys: set[str] | None = None,
|
|
164
|
+
) -> tuple[str, list[str]]:
|
|
165
|
+
"""Return text with the canonical Wiki_Medicina frontmatter shape.
|
|
166
|
+
|
|
167
|
+
Canonical Wiki notes use frontmatter only for exact aliases, Obsidian tags,
|
|
168
|
+
and additive metadata owned by downstream workflows. The enricher owns the
|
|
169
|
+
image metadata keys, so those blocks are preserved verbatim.
|
|
170
|
+
"""
|
|
171
|
+
|
|
172
|
+
frontmatter, body = split_frontmatter(text)
|
|
173
|
+
if frontmatter is None:
|
|
174
|
+
return text, []
|
|
175
|
+
|
|
176
|
+
preserve_keys = {_normalize_key(key) for key in (preserve_keys or set())}
|
|
177
|
+
blocks = _frontmatter_blocks(frontmatter)
|
|
178
|
+
try:
|
|
179
|
+
data = load_frontmatter_yaml(text)
|
|
180
|
+
except FrontmatterYamlUnavailable:
|
|
181
|
+
if yaml is None or any(_normalize_key(block.key) in preserve_keys for block in blocks):
|
|
182
|
+
raise
|
|
183
|
+
data = _load_frontmatter_map(frontmatter)
|
|
184
|
+
aliases = _canonical_aliases(_extract_aliases_from_map(data), title=title)
|
|
185
|
+
raw_tags = _extract_tags_from_map(data)
|
|
186
|
+
tags = _canonical_tags(raw_tags)
|
|
187
|
+
preserved = _preserved_frontmatter_items(data, blocks, preserve_keys=preserve_keys)
|
|
188
|
+
canonical = _format_canonical_frontmatter(aliases, tags, preserved)
|
|
189
|
+
normalized_body = body.lstrip("\n")
|
|
190
|
+
normalized = normalized_body if not canonical else f"{_FRONTMATTER_DELIM}\n{canonical}{_FRONTMATTER_DELIM}\n{normalized_body}"
|
|
191
|
+
if normalized == text:
|
|
192
|
+
return text, []
|
|
193
|
+
fixes: list[str] = []
|
|
194
|
+
if aliases:
|
|
195
|
+
fixes.append("normalize_frontmatter_aliases")
|
|
196
|
+
if raw_tags:
|
|
197
|
+
fixes.append("normalize_frontmatter_tags")
|
|
198
|
+
if raw_tags and tags != _canonical_raw_tag_keys(raw_tags):
|
|
199
|
+
fixes.append("remove_nonoperational_frontmatter_tags")
|
|
200
|
+
if preserved:
|
|
201
|
+
fixes.append("preserve_enricher_frontmatter")
|
|
202
|
+
removed_keys = _removed_frontmatter_keys(blocks, preserve_keys=preserve_keys)
|
|
203
|
+
if removed_keys:
|
|
204
|
+
fixes.append("remove_noncanonical_frontmatter_keys")
|
|
205
|
+
if not canonical:
|
|
206
|
+
fixes.append("remove_empty_frontmatter")
|
|
207
|
+
return normalized, fixes
|
|
208
|
+
|
|
209
|
+
|
|
210
|
+
def wiki_frontmatter_aliases(text: str) -> list[str]:
|
|
211
|
+
frontmatter, _body = split_frontmatter(text)
|
|
212
|
+
if frontmatter is None:
|
|
213
|
+
return []
|
|
214
|
+
return _canonical_aliases(_extract_aliases(frontmatter), title=None)
|
|
215
|
+
|
|
216
|
+
|
|
217
|
+
def _frontmatter_blocks(frontmatter: str) -> list[FrontmatterBlock]:
|
|
218
|
+
lines = frontmatter.splitlines(keepends=True)
|
|
219
|
+
blocks: list[FrontmatterBlock] = []
|
|
220
|
+
idx = 0
|
|
221
|
+
while idx < len(lines):
|
|
222
|
+
match = _top_level_key_match(lines[idx])
|
|
223
|
+
if not match:
|
|
224
|
+
idx += 1
|
|
225
|
+
continue
|
|
226
|
+
start = idx
|
|
227
|
+
idx += 1
|
|
228
|
+
while idx < len(lines) and not _top_level_key_match(lines[idx]):
|
|
229
|
+
idx += 1
|
|
230
|
+
blocks.append(FrontmatterBlock(match.group(1), tuple(lines[start:idx])))
|
|
231
|
+
return blocks
|
|
232
|
+
|
|
233
|
+
|
|
234
|
+
def _load_frontmatter_map(frontmatter: str) -> dict[str, Any]:
|
|
235
|
+
if yaml is not None:
|
|
236
|
+
try:
|
|
237
|
+
loaded = yaml.safe_load(frontmatter) or {}
|
|
238
|
+
except Exception:
|
|
239
|
+
loaded = None
|
|
240
|
+
if isinstance(loaded, dict):
|
|
241
|
+
return {str(key): value for key, value in loaded.items()}
|
|
242
|
+
|
|
243
|
+
parsed: dict[str, Any] = {}
|
|
244
|
+
for block in _frontmatter_blocks(frontmatter):
|
|
245
|
+
key, raw = _parse_block_header(block)
|
|
246
|
+
if raw.startswith("[") and raw.endswith("]"):
|
|
247
|
+
parsed[key] = [_strip_quotes(item) for item in raw[1:-1].split(",") if item.strip()]
|
|
248
|
+
elif raw:
|
|
249
|
+
parsed[key] = _strip_quotes(raw)
|
|
250
|
+
else:
|
|
251
|
+
values = []
|
|
252
|
+
for line in block.lines[1:]:
|
|
253
|
+
match = re.match(r"^\s*-\s*(.+?)\s*$", line)
|
|
254
|
+
if match:
|
|
255
|
+
values.append(_strip_quotes(match.group(1)))
|
|
256
|
+
parsed[key] = values
|
|
257
|
+
return parsed
|
|
258
|
+
|
|
259
|
+
|
|
260
|
+
def _extract_aliases(frontmatter: str) -> list[str]:
|
|
261
|
+
data = _load_frontmatter_map(frontmatter)
|
|
262
|
+
return _extract_aliases_from_map(data)
|
|
263
|
+
|
|
264
|
+
|
|
265
|
+
def _extract_aliases_from_map(data: dict[str, Any]) -> list[str]:
|
|
266
|
+
aliases: list[str] = []
|
|
267
|
+
for key, value in data.items():
|
|
268
|
+
if _normalize_key(key) in _ALIAS_KEYS:
|
|
269
|
+
aliases.extend(_coerce_string_list(value))
|
|
270
|
+
return aliases
|
|
271
|
+
|
|
272
|
+
|
|
273
|
+
def _extract_tags(frontmatter: str) -> list[str]:
|
|
274
|
+
data = _load_frontmatter_map(frontmatter)
|
|
275
|
+
return _extract_tags_from_map(data)
|
|
276
|
+
|
|
277
|
+
|
|
278
|
+
def _extract_tags_from_map(data: dict[str, Any]) -> list[str]:
|
|
279
|
+
tags: list[str] = []
|
|
280
|
+
for key, value in data.items():
|
|
281
|
+
if _normalize_key(key) in _TAG_KEYS:
|
|
282
|
+
tags.extend(_coerce_string_list(value))
|
|
283
|
+
return tags
|
|
284
|
+
|
|
285
|
+
|
|
286
|
+
def _coerce_string_list(value: Any) -> list[str]:
|
|
287
|
+
if value is None:
|
|
288
|
+
return []
|
|
289
|
+
if isinstance(value, str):
|
|
290
|
+
return [value]
|
|
291
|
+
if isinstance(value, (list, tuple)):
|
|
292
|
+
return [str(item) for item in value if item is not None]
|
|
293
|
+
return [str(value)]
|
|
294
|
+
|
|
295
|
+
|
|
296
|
+
def _canonical_aliases(values: list[str], *, title: str | None) -> list[str]:
|
|
297
|
+
aliases: list[str] = []
|
|
298
|
+
seen: set[str] = set()
|
|
299
|
+
title_key = _normalize_alias(title or "") if title else ""
|
|
300
|
+
for value in values:
|
|
301
|
+
alias = re.sub(r"\s+", " ", _strip_quotes(str(value))).strip()
|
|
302
|
+
if not alias:
|
|
303
|
+
continue
|
|
304
|
+
key = _normalize_alias(alias)
|
|
305
|
+
if not key or key == title_key or key in seen:
|
|
306
|
+
continue
|
|
307
|
+
seen.add(key)
|
|
308
|
+
aliases.append(alias)
|
|
309
|
+
return aliases
|
|
310
|
+
|
|
311
|
+
|
|
312
|
+
def _canonical_tags(values: list[str]) -> list[str]:
|
|
313
|
+
tags: list[str] = []
|
|
314
|
+
seen: set[str] = set()
|
|
315
|
+
for value in values:
|
|
316
|
+
tag = _canonical_tag_key(value)
|
|
317
|
+
if not tag or tag not in OPERATIONAL_WIKI_TAGS:
|
|
318
|
+
continue
|
|
319
|
+
if tag in seen:
|
|
320
|
+
continue
|
|
321
|
+
seen.add(tag)
|
|
322
|
+
tags.append(tag)
|
|
323
|
+
return tags
|
|
324
|
+
|
|
325
|
+
|
|
326
|
+
def canonical_wiki_tags(values: list[str]) -> list[str]:
|
|
327
|
+
return _canonical_tags(values)
|
|
328
|
+
|
|
329
|
+
|
|
330
|
+
def _canonical_raw_tag_keys(values: list[str]) -> list[str]:
|
|
331
|
+
tags: list[str] = []
|
|
332
|
+
seen: set[str] = set()
|
|
333
|
+
for value in values:
|
|
334
|
+
tag = _canonical_tag_key(value)
|
|
335
|
+
if not tag or tag in seen:
|
|
336
|
+
continue
|
|
337
|
+
seen.add(tag)
|
|
338
|
+
tags.append(tag)
|
|
339
|
+
return tags
|
|
340
|
+
|
|
341
|
+
|
|
342
|
+
def _canonical_tag_key(value: object) -> str:
|
|
343
|
+
return re.sub(r"\s+", " ", _strip_quotes(str(value)).lstrip("#")).strip().casefold()
|
|
344
|
+
|
|
345
|
+
|
|
346
|
+
def _preserved_frontmatter_items(
|
|
347
|
+
data: dict[str, Any],
|
|
348
|
+
blocks: list[FrontmatterBlock],
|
|
349
|
+
*,
|
|
350
|
+
preserve_keys: set[str],
|
|
351
|
+
) -> list[tuple[str, Any]]:
|
|
352
|
+
items: list[tuple[str, Any]] = []
|
|
353
|
+
seen: set[str] = set()
|
|
354
|
+
allowed = {*_ENRICHER_KEYS, *preserve_keys}
|
|
355
|
+
for block in blocks:
|
|
356
|
+
key = _normalize_key(block.key)
|
|
357
|
+
if key in seen or not _is_preserved_frontmatter_key(key, allowed):
|
|
358
|
+
continue
|
|
359
|
+
for original_key, value in data.items():
|
|
360
|
+
if _normalize_key(str(original_key)) == key:
|
|
361
|
+
items.append((str(original_key), value))
|
|
362
|
+
seen.add(key)
|
|
363
|
+
break
|
|
364
|
+
return items
|
|
365
|
+
|
|
366
|
+
|
|
367
|
+
def _format_canonical_frontmatter(aliases: list[str], tags: list[str], preserved: list[tuple[str, Any]]) -> str:
|
|
368
|
+
lines: list[str] = []
|
|
369
|
+
if aliases:
|
|
370
|
+
lines.append("aliases:\n")
|
|
371
|
+
lines.extend(f" - {_format_yaml_string(alias)}\n" for alias in aliases)
|
|
372
|
+
if tags:
|
|
373
|
+
lines.append("tags:\n")
|
|
374
|
+
lines.extend(f" - {_format_yaml_tag(tag)}\n" for tag in tags)
|
|
375
|
+
for key, value in preserved:
|
|
376
|
+
if _normalize_key(key) in _ALIAS_KEYS or _normalize_key(key) in _TAG_KEYS:
|
|
377
|
+
continue
|
|
378
|
+
lines.extend(_dump_frontmatter_item(key, value))
|
|
379
|
+
return "".join(lines)
|
|
380
|
+
|
|
381
|
+
|
|
382
|
+
def _format_yaml_string(value: str) -> str:
|
|
383
|
+
return json.dumps(value, ensure_ascii=False)
|
|
384
|
+
|
|
385
|
+
|
|
386
|
+
def _format_yaml_tag(value: str) -> str:
|
|
387
|
+
if re.match(r"^[A-Za-z0-9_/-]+$", value):
|
|
388
|
+
return value
|
|
389
|
+
return _format_yaml_string(value)
|
|
390
|
+
|
|
391
|
+
|
|
392
|
+
def _ensure_block_newlines(lines: tuple[str, ...]) -> list[str]:
|
|
393
|
+
fixed: list[str] = []
|
|
394
|
+
for line in lines:
|
|
395
|
+
fixed.append(line if line.endswith("\n") else f"{line}\n")
|
|
396
|
+
return fixed
|
|
397
|
+
|
|
398
|
+
|
|
399
|
+
def _dump_frontmatter_item(key: str, value: Any) -> list[str]:
|
|
400
|
+
dumped = dump_frontmatter_yaml({key: value})
|
|
401
|
+
return _ensure_block_newlines(tuple(dumped.splitlines(keepends=True)))
|
|
402
|
+
|
|
403
|
+
|
|
404
|
+
def _removed_frontmatter_keys(blocks: list[FrontmatterBlock], *, preserve_keys: set[str] | None = None) -> list[str]:
|
|
405
|
+
preserve_keys = preserve_keys or set()
|
|
406
|
+
removed: list[str] = []
|
|
407
|
+
for block in blocks:
|
|
408
|
+
key = _normalize_key(block.key)
|
|
409
|
+
if key not in _ALIAS_KEYS and key not in _TAG_KEYS and not _is_preserved_frontmatter_key(key, preserve_keys):
|
|
410
|
+
removed.append(block.key)
|
|
411
|
+
return removed
|
|
412
|
+
|
|
413
|
+
|
|
414
|
+
def _is_preserved_frontmatter_key(key: str, preserve_keys: set[str]) -> bool:
|
|
415
|
+
return key in _ENRICHER_KEYS or key in SOURCE_METADATA_KEYS or key in preserve_keys or key.startswith("images_")
|
|
416
|
+
|
|
417
|
+
|
|
418
|
+
def _parse_block_header(block: FrontmatterBlock) -> tuple[str, str]:
|
|
419
|
+
first = block.lines[0].strip()
|
|
420
|
+
match = _KEY_RE.match(first)
|
|
421
|
+
if not match:
|
|
422
|
+
return block.key, ""
|
|
423
|
+
return match.group(1), match.group(2).strip()
|
|
424
|
+
|
|
425
|
+
|
|
426
|
+
def _top_level_key_match(line: str) -> re.Match[str] | None:
|
|
427
|
+
return _KEY_RE.match(line.rstrip("\r\n"))
|
|
428
|
+
|
|
429
|
+
|
|
430
|
+
def _normalize_key(value: str) -> str:
|
|
431
|
+
return value.strip().lower()
|
|
432
|
+
|
|
433
|
+
|
|
434
|
+
def _normalize_alias(value: str) -> str:
|
|
435
|
+
return re.sub(r"\s+", " ", value).strip().casefold()
|