mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_machine.py +1588 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_plan.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_primary_objective.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_problem.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_receipt_evidence.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_states.py +290 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_user_report.py +342 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/health.py +6332 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_fsm.py +1119 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_machine.py +1106 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_retry_governance.py +374 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_runtime_result.py +485 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_triggers.py +183 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/linking.py +2758 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/reference_repair.py +718 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/related_notes_fsm.py +1855 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/link_related_machine.py +834 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_fsm.py +1592 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_machine.py +3097 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_primary_objective.py +28 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_runtime_result.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/performance.py +97 -0
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- package/.opencode/mednotes/src/mednotes/platform/feedback/integrity.py +989 -0
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- package/package.json +45 -0
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"""Shared primitives for deterministic Wiki workflow operations."""
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import json
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# Generic exit codes + the MedOpsError hierarchy live in the framework; the
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from mednotes.kernel.errors import ( # noqa: F401
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)
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EXIT_LINKER = 6
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MIGRATION_PLAN_SCHEMA = "medical-notes-workbench.taxonomy-migration-plan.v1"
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MIGRATION_RECEIPT_SCHEMA = "medical-notes-workbench.taxonomy-migration-receipt.v1"
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SUBAGENT_PLAN_SCHEMA = "medical-notes-workbench.subagent-plan.v1"
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WIKI_HEALTH_FIX_SCHEMA = "medical-notes-workbench.wiki-health-fix.v1"
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BLOCKER_RESOLUTION_SCHEMA = "medical-notes-workbench.blocker-resolution.v1"
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NOTE_MERGE_PLAN_SCHEMA = "medical-notes-workbench.note-merge-plan.v1"
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NOTE_MERGE_APPLY_SCHEMA = "medical-notes-workbench.note-merge-apply.v1"
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# Exit codes and the MedOpsError hierarchy now live in mednotes.kernel.errors
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"""Return an executable command for the current Wiki CLI entrypoint."""
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shim = Path(__file__).resolve().parents[4] / "scripts" / "mednotes" / "wiki" / "cli.py"
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def wiki_cli_command(*args: object) -> str:
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# Forma RELATIVA-ao-checkout dos caminhos canônicos, para instruções voltadas ao
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# agent que mostram um caminho relativo (vs. o absoluto do wiki_cli_base_command
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# acima). Fonte única: ao reorganizar a árvore, atualize SÓ aqui.
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WIKI_CLI_RELPATH = "bundle/scripts/mednotes/wiki/cli.py"
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def wiki_cli_relative_command(command: str = "") -> str:
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"""`uv run python <cli> <command>` relativo ao checkout, para instruções ao agent."""
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"""Configuration and resolved path helpers for Wiki workflows."""
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from mednotes.kernel.base import JsonObject, JsonObjectAdapter
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expand_path,
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find_config,
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read_toml,
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)
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DEFAULT_CATALOG_PATH = mednotes_paths_module.DEFAULT_CATALOG_PATH
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DEFAULT_WIKI_DIR = ""
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@dataclass(frozen=True)
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class MedConfig:
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raw_dir: Path
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wiki_dir: Path
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catalog_path: Path
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vocabulary_db_path: Path | None = None
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artifact_dir: Path | None = None
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state_dir: Path | None = None
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wiki_source: str = ""
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wiki_compat_warnings: tuple[str, ...] = ()
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wiki_memory_path: Path | None = None
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config_path: Path | None = None
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user_config: MedNotesUserConfig = field(default_factory=MedNotesUserConfig)
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def _path(value: str | os.PathLike[str]) -> Path:
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return expand_path(value)
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class WikiPathResolutionError(ValidationError):
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"""Raised when wiki_dir cannot be resolved safely before a workflow."""
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def __init__(self, resolution: WikiPathResolution):
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self.resolution = resolution
|
|
59
|
+
super().__init__(resolution.next_action or resolution.blocked_reason)
|
|
60
|
+
|
|
61
|
+
def payload(self, *, phase: str = "resolve_wiki_dir") -> dict[str, object]:
|
|
62
|
+
resolution_payload = self.resolution.as_payload(phase=phase)
|
|
63
|
+
blocker = blocker_from_wiki_resolution(resolution_payload)
|
|
64
|
+
result = PathResolutionResult(status="blocked", blocker=blocker)
|
|
65
|
+
return {
|
|
66
|
+
**resolution_payload,
|
|
67
|
+
**result.model_dump(mode="json")["blocker"],
|
|
68
|
+
"status": "blocked",
|
|
69
|
+
}
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
def _user_state_dir() -> Path:
|
|
73
|
+
return user_state_dir()
|
|
74
|
+
|
|
75
|
+
|
|
76
|
+
def _default_catalog_path() -> Path:
|
|
77
|
+
return user_state_dir() / "CATALOGO_WIKI.json"
|
|
78
|
+
|
|
79
|
+
|
|
80
|
+
def _json_field(payload: JsonObject, key: str) -> object:
|
|
81
|
+
if key not in payload:
|
|
82
|
+
return None
|
|
83
|
+
return payload[key]
|
|
84
|
+
|
|
85
|
+
|
|
86
|
+
def _json_str_field(payload: JsonObject, key: str) -> str:
|
|
87
|
+
value = _json_field(payload, key)
|
|
88
|
+
return value if isinstance(value, str) else ""
|
|
89
|
+
|
|
90
|
+
|
|
91
|
+
def _json_list_field(payload: JsonObject, key: str) -> list[object]:
|
|
92
|
+
value = _json_field(payload, key)
|
|
93
|
+
return value if isinstance(value, list) else []
|
|
94
|
+
|
|
95
|
+
|
|
96
|
+
def _json_object_field(payload: JsonObject, key: str) -> JsonObject:
|
|
97
|
+
value = _json_field(payload, key)
|
|
98
|
+
return JsonObjectAdapter.validate_python(value) if isinstance(value, dict) else {}
|
|
99
|
+
|
|
100
|
+
|
|
101
|
+
def _read_toml(path: Path | None) -> JsonObject:
|
|
102
|
+
try:
|
|
103
|
+
return JsonObjectAdapter.validate_python(read_toml(path))
|
|
104
|
+
except RuntimeError as exc:
|
|
105
|
+
raise ValidationError(str(exc)) from exc
|
|
106
|
+
|
|
107
|
+
|
|
108
|
+
def _load_user_config(path: Path | None) -> MedNotesUserConfig:
|
|
109
|
+
try:
|
|
110
|
+
return load_user_config(path)
|
|
111
|
+
except (OSError, tomllib.TOMLDecodeError, PydanticValidationError) as exc:
|
|
112
|
+
raise ValidationError(f"invalid MedNotes config: {exc}") from exc
|
|
113
|
+
|
|
114
|
+
|
|
115
|
+
def _find_config(explicit: str | None) -> Path | None:
|
|
116
|
+
return find_config(explicit, start=Path.cwd())
|
|
117
|
+
|
|
118
|
+
|
|
119
|
+
def resolve_config(args: argparse.Namespace) -> MedConfig:
|
|
120
|
+
explicit_config = getattr(args, "config", None)
|
|
121
|
+
config_path = _find_config(explicit_config)
|
|
122
|
+
user_config = _load_user_config(config_path)
|
|
123
|
+
cfg = _read_toml(config_path)
|
|
124
|
+
section = _json_object_field(cfg, "chat_processor")
|
|
125
|
+
|
|
126
|
+
def pick(name: str, env: str, default: str | os.PathLike[str]) -> Path:
|
|
127
|
+
cli_value = getattr(args, name, None)
|
|
128
|
+
value = cli_value or os.getenv(env) or _json_field(section, name) or default
|
|
129
|
+
return _path(str(value))
|
|
130
|
+
|
|
131
|
+
def pick_optional(name: str, env: str) -> Path | None:
|
|
132
|
+
cli_value = getattr(args, name, None)
|
|
133
|
+
value = cli_value or os.getenv(env) or _json_field(section, name)
|
|
134
|
+
return _path(str(value)) if value else None
|
|
135
|
+
|
|
136
|
+
vocabulary_value = (
|
|
137
|
+
getattr(args, "vocabulary_db", None)
|
|
138
|
+
or os.getenv("MEDNOTES_VOCABULARY_DB")
|
|
139
|
+
or _json_field(section, "vocabulary_db_path")
|
|
140
|
+
or _json_field(section, "vocabulary_db")
|
|
141
|
+
)
|
|
142
|
+
vocabulary_db_path = _path(str(vocabulary_value)) if vocabulary_value else user_state_dir() / "vocabulary.sqlite"
|
|
143
|
+
|
|
144
|
+
wiki_resolution = resolve_wiki_dir(
|
|
145
|
+
explicit=getattr(args, "wiki_dir", None),
|
|
146
|
+
config=explicit_config,
|
|
147
|
+
start=Path.cwd(),
|
|
148
|
+
enable_gemini_probe=False,
|
|
149
|
+
)
|
|
150
|
+
if not wiki_resolution.ok:
|
|
151
|
+
raise WikiPathResolutionError(wiki_resolution)
|
|
152
|
+
wiki_dir = wiki_resolution.path
|
|
153
|
+
if wiki_dir is None:
|
|
154
|
+
raise WikiPathResolutionError(wiki_resolution)
|
|
155
|
+
|
|
156
|
+
return MedConfig(
|
|
157
|
+
raw_dir=resolve_raw_dir(
|
|
158
|
+
explicit=getattr(args, "raw_dir", None),
|
|
159
|
+
config=explicit_config,
|
|
160
|
+
start=Path.cwd(),
|
|
161
|
+
),
|
|
162
|
+
wiki_dir=wiki_dir,
|
|
163
|
+
catalog_path=pick("catalog_path", "MED_CATALOG_PATH", _default_catalog_path()),
|
|
164
|
+
vocabulary_db_path=vocabulary_db_path,
|
|
165
|
+
artifact_dir=pick_optional("artifact_dir", "MED_ARTIFACT_DIR"),
|
|
166
|
+
state_dir=user_state_dir(),
|
|
167
|
+
wiki_source=wiki_resolution.source,
|
|
168
|
+
wiki_compat_warnings=wiki_resolution.compat_warnings,
|
|
169
|
+
wiki_memory_path=wiki_resolution.memory_path,
|
|
170
|
+
config_path=config_path,
|
|
171
|
+
user_config=user_config,
|
|
172
|
+
)
|
|
173
|
+
|
|
174
|
+
|
|
175
|
+
def validate_config(config: MedConfig) -> JsonObject:
|
|
176
|
+
preflight = environment_preflight(
|
|
177
|
+
extension_root=Path(__file__).resolve().parents[4],
|
|
178
|
+
state_dir=config.state_dir or user_state_dir(),
|
|
179
|
+
sample_paths=[
|
|
180
|
+
config.raw_dir,
|
|
181
|
+
config.wiki_dir,
|
|
182
|
+
config.catalog_path,
|
|
183
|
+
*( [config.vocabulary_db_path] if config.vocabulary_db_path else [] ),
|
|
184
|
+
],
|
|
185
|
+
)
|
|
186
|
+
preflight_payload = JsonObjectAdapter.validate_python(preflight)
|
|
187
|
+
return {
|
|
188
|
+
"phase": "validate_environment",
|
|
189
|
+
"status": _json_str_field(preflight_payload, "status") or "completed",
|
|
190
|
+
"blocked_reason": _json_str_field(preflight_payload, "blocked_reason"),
|
|
191
|
+
"next_action": _json_str_field(preflight_payload, "next_action"),
|
|
192
|
+
"required_inputs": _json_list_field(preflight_payload, "required_inputs"),
|
|
193
|
+
"human_decision_required": False,
|
|
194
|
+
"raw_dir": str(config.raw_dir),
|
|
195
|
+
"raw_dir_exists": config.raw_dir.exists(),
|
|
196
|
+
"wiki_dir": str(config.wiki_dir),
|
|
197
|
+
"wiki_dir_exists": config.wiki_dir.exists(),
|
|
198
|
+
"wiki_source": config.wiki_source,
|
|
199
|
+
"wiki_memory_path": str(config.wiki_memory_path) if config.wiki_memory_path else "",
|
|
200
|
+
"config_path": str(config.config_path) if config.config_path else "",
|
|
201
|
+
"config_encoding_warnings": config_encoding_warnings(config.config_path),
|
|
202
|
+
"wiki_compat_warnings": list(config.wiki_compat_warnings),
|
|
203
|
+
"catalog_path": str(config.catalog_path),
|
|
204
|
+
"catalog_path_exists": config.catalog_path.exists(),
|
|
205
|
+
"vocabulary_db_path": str(config.vocabulary_db_path) if config.vocabulary_db_path else "",
|
|
206
|
+
"vocabulary_db_exists": bool(config.vocabulary_db_path and config.vocabulary_db_path.exists()),
|
|
207
|
+
"artifact_dir": str(config.artifact_dir) if config.artifact_dir else "",
|
|
208
|
+
"artifact_dir_exists": bool(config.artifact_dir and config.artifact_dir.exists()),
|
|
209
|
+
"environment_preflight": preflight,
|
|
210
|
+
}
|
|
@@ -0,0 +1,74 @@
|
|
|
1
|
+
"""Executable contract models for Medical Notes Workbench workflows."""
|
|
2
|
+
|
|
3
|
+
from mednotes.kernel.base import ContractModel, contract_error
|
|
4
|
+
from mednotes.kernel.blockers import BlockerEntryModel
|
|
5
|
+
from mednotes.kernel.progress import (
|
|
6
|
+
ProgressMode,
|
|
7
|
+
WorkflowProgressCounts,
|
|
8
|
+
WorkflowProgressEvent,
|
|
9
|
+
WorkflowProgressEventType,
|
|
10
|
+
WorkflowProgressState,
|
|
11
|
+
WorkflowProgressStatus,
|
|
12
|
+
WorkflowProgressViewModel,
|
|
13
|
+
build_progress_view_model,
|
|
14
|
+
fold_progress_events,
|
|
15
|
+
)
|
|
16
|
+
from mednotes.kernel.state_machine import (
|
|
17
|
+
WorkflowStateCategory,
|
|
18
|
+
WorkflowStateMachineSnapshot,
|
|
19
|
+
WorkflowTransition,
|
|
20
|
+
)
|
|
21
|
+
from mednotes.kernel.workflow import (
|
|
22
|
+
AutomationKind,
|
|
23
|
+
DecisionEvidence,
|
|
24
|
+
DecisionKind,
|
|
25
|
+
HumanDecisionOption,
|
|
26
|
+
HumanDecisionPacket,
|
|
27
|
+
ReceiptStatus,
|
|
28
|
+
RejectedAutomation,
|
|
29
|
+
VersionControlSafety,
|
|
30
|
+
WorkflowArtifact,
|
|
31
|
+
WorkflowAutomationKind,
|
|
32
|
+
WorkflowDecision,
|
|
33
|
+
WorkflowDecisionKind,
|
|
34
|
+
WorkflowOutcomeError,
|
|
35
|
+
WorkflowPhaseOutcome,
|
|
36
|
+
WorkflowPhaseReceipt,
|
|
37
|
+
WorkflowReceiptPayload,
|
|
38
|
+
WorkflowRollback,
|
|
39
|
+
)
|
|
40
|
+
|
|
41
|
+
__all__ = [
|
|
42
|
+
"AutomationKind",
|
|
43
|
+
"BlockerEntryModel",
|
|
44
|
+
"ContractModel",
|
|
45
|
+
"DecisionEvidence",
|
|
46
|
+
"DecisionKind",
|
|
47
|
+
"HumanDecisionOption",
|
|
48
|
+
"HumanDecisionPacket",
|
|
49
|
+
"ProgressMode",
|
|
50
|
+
"ReceiptStatus",
|
|
51
|
+
"RejectedAutomation",
|
|
52
|
+
"VersionControlSafety",
|
|
53
|
+
"WorkflowAutomationKind",
|
|
54
|
+
"WorkflowArtifact",
|
|
55
|
+
"WorkflowDecision",
|
|
56
|
+
"WorkflowDecisionKind",
|
|
57
|
+
"WorkflowOutcomeError",
|
|
58
|
+
"WorkflowPhaseOutcome",
|
|
59
|
+
"WorkflowPhaseReceipt",
|
|
60
|
+
"WorkflowProgressCounts",
|
|
61
|
+
"WorkflowProgressEvent",
|
|
62
|
+
"WorkflowProgressEventType",
|
|
63
|
+
"WorkflowProgressState",
|
|
64
|
+
"WorkflowProgressStatus",
|
|
65
|
+
"WorkflowProgressViewModel",
|
|
66
|
+
"WorkflowReceiptPayload",
|
|
67
|
+
"WorkflowRollback",
|
|
68
|
+
"WorkflowStateCategory",
|
|
69
|
+
"WorkflowStateMachineSnapshot",
|
|
70
|
+
"WorkflowTransition",
|
|
71
|
+
"build_progress_view_model",
|
|
72
|
+
"contract_error",
|
|
73
|
+
"fold_progress_events",
|
|
74
|
+
]
|
|
@@ -0,0 +1,242 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from enum import StrEnum
|
|
4
|
+
from typing import Literal
|
|
5
|
+
|
|
6
|
+
from pydantic import Field, field_validator, model_validator
|
|
7
|
+
from pydantic_core.core_schema import ValidationInfo
|
|
8
|
+
|
|
9
|
+
from mednotes.domains.wiki.contracts.agent_run_audit import WorkflowTranscriptAuditResult
|
|
10
|
+
from mednotes.domains.wiki.contracts.happy_path import HappyPathRunMetrics
|
|
11
|
+
from mednotes.domains.wiki.contracts.public_report import WorkflowPublicReportViewModel
|
|
12
|
+
from mednotes.kernel.base import ContractModel, JsonObject
|
|
13
|
+
from mednotes.kernel.public_report import WorkflowPrimaryObjectiveSummary
|
|
14
|
+
|
|
15
|
+
|
|
16
|
+
class AgentRunReportFindingCode(StrEnum):
|
|
17
|
+
RECEIPT_STATUS_MISMATCH = "agent.final_report_receipt_status_mismatch"
|
|
18
|
+
PROGRESS_STATUS_MISMATCH = "agent.final_report_progress_status_mismatch"
|
|
19
|
+
WORKFLOW_STATUS_OMITTED = "agent.final_report_workflow_status_omitted"
|
|
20
|
+
OMITTED_TOOL_ERROR = "agent.final_report_omitted_tool_error"
|
|
21
|
+
REPORTED_ARTIFACT_PATH_INVALID = "agent.final_report_artifact_path_invalid"
|
|
22
|
+
FINAL_REPORT_LOCAL_PATH_LEAK = "agent.final_report_local_path_leak"
|
|
23
|
+
SUCCESS_CLAIM_MISMATCH = "agent.final_report_success_claim_mismatch"
|
|
24
|
+
PUBLIC_OUTPUT_INTERNAL_TERM_LEAK = "agent.public_output_internal_term_leak"
|
|
25
|
+
STALE_NEXT_ACTION = "agent.workflow_stale_next_action"
|
|
26
|
+
PRIMARY_OBJECTIVE_OMITTED = "agent.final_report_primary_objective_omitted"
|
|
27
|
+
TOOL_DEVIATION_OMITTED = "agent.final_report_tool_deviation_omitted"
|
|
28
|
+
WORKFLOW_CONTRACT_CONTRADICTION = "agent.workflow_contract_contradiction"
|
|
29
|
+
AGENT_EVENT_OMITTED = "agent.final_report_agent_event_omitted"
|
|
30
|
+
VERSION_CONTROL_SAFETY_OMITTED = "agent.final_report_version_control_safety_omitted"
|
|
31
|
+
API_ACCOUNTING_MISMATCH = "agent.final_report_api_accounting_mismatch"
|
|
32
|
+
OPERATIONAL_WARNING_OMITTED = "agent.final_report_operational_warning_omitted"
|
|
33
|
+
WAITING_AGENT_CONTINUATION_OMITTED = "agent.final_report_waiting_agent_continuation_omitted"
|
|
34
|
+
FINAL_REPORT_NOT_ALLOWED = "agent.final_report_not_allowed"
|
|
35
|
+
WORKFLOW_AGENT_DIRECTIVE_INVALID = "agent.workflow_agent_directive_invalid"
|
|
36
|
+
MISSING_ERROR_CONTEXT_ROOT_CAUSE = "agent.final_report_missing_error_context_root_cause"
|
|
37
|
+
CONTENT_QUALITY_AUDIT_OMITTED = "agent.final_report_content_quality_audit_omitted"
|
|
38
|
+
RUNTIME_ERROR_OMITTED = "agent.final_report_runtime_error_omitted"
|
|
39
|
+
RUNTIME_PERFORMANCE_BUG = "agent.runtime_performance_bug"
|
|
40
|
+
RUNTIME_ROUTE_PROBE_OBSERVED = "agent.runtime_route_probe_observed"
|
|
41
|
+
SPECIALIST_MODEL_POLICY_VIOLATION = "agent.specialist_model_policy_violation"
|
|
42
|
+
BLOCKED_TOOL_RESULT_OMITTED = "agent.final_report_blocked_tool_result_omitted"
|
|
43
|
+
RUN_FINISH_OMITTED = "agent.final_report_run_finish_omitted"
|
|
44
|
+
FINAL_REPORT_INCOMPLETE = "agent.final_report_incomplete"
|
|
45
|
+
WAITING_EXTERNAL_CONTINUATION_ATTEMPTED = "agent.waiting_external_continuation_attempted"
|
|
46
|
+
BATCH_PROGRESS_REPORT_OMITTED = "agent.batch_progress_report_omitted"
|
|
47
|
+
SPECIALIST_APPLY_STEP_OMITTED = "agent.specialist_apply_step_omitted"
|
|
48
|
+
SPECIALIST_REWRITE_COUNT_MISMATCH = "agent.final_report_specialist_rewrite_count_mismatch"
|
|
49
|
+
READY_CONTINUATION_STOPPED = "agent.ready_continuation_stopped"
|
|
50
|
+
PROCESS_CHATS_PRIMARY_OBJECTIVE_UNRESOLVED = "agent.process_chats_primary_objective_unresolved"
|
|
51
|
+
PROCESS_CHATS_VAULT_DELETION_WITHOUT_RECEIPT = "agent.process_chats_vault_deletion_without_receipt"
|
|
52
|
+
TRANSCRIPT_UNREADABLE = "agent.transcript_unreadable"
|
|
53
|
+
SUBAGENT_RAW_CONTENT_CONTRACT_VIOLATION = "agent.subagent_raw_content_contract_violation"
|
|
54
|
+
PARENT_CANONICAL_ARTIFACT_WRITE_BEFORE_SUBAGENT = "agent.parent_canonical_artifact_write_before_subagent"
|
|
55
|
+
PARENT_CANONICAL_ARTIFACT_WRITE_AFTER_SUBAGENT = "agent.parent_canonical_artifact_write_after_subagent"
|
|
56
|
+
PARALLEL_HUMAN_DECISION_BACKLOG = "agent.parallel_human_decision_backlog"
|
|
57
|
+
AGY_MATERIALIZED_SKILL_MISCLASSIFIED_AS_STALE = "agent.agy_materialized_skill_misclassified_as_stale"
|
|
58
|
+
RECOVERABLE_TOOL_ERROR_OBSERVED = "agent.recoverable_tool_error_observed"
|
|
59
|
+
EFFECT_PAYLOAD_CONTRACT_INVALID = "effect_payload_contract_invalid"
|
|
60
|
+
|
|
61
|
+
|
|
62
|
+
AgentRunReportSeverity = Literal["low", "medium", "high", "critical"]
|
|
63
|
+
AgentRunReportValidationStatus = Literal["completed", "blocked"]
|
|
64
|
+
FixWikiObjectiveStatus = Literal["yes", "partial", "no", "waiting_agent", "waiting_external", "failed", "unknown"]
|
|
65
|
+
FixWikiGraphStatus = Literal["improved", "clean", "blocked", "unchanged", "worse", "unknown"]
|
|
66
|
+
FixWikiRelatedNotesStatus = Literal["updated", "pending", "blocked", "skipped", "unknown"]
|
|
67
|
+
ProcessChatsObjectiveStatus = Literal[
|
|
68
|
+
"no_pending",
|
|
69
|
+
"preview_ready",
|
|
70
|
+
"ready_to_publish",
|
|
71
|
+
"published",
|
|
72
|
+
"completed_with_link_blockers",
|
|
73
|
+
"completed",
|
|
74
|
+
"blocked",
|
|
75
|
+
"failed",
|
|
76
|
+
"unknown",
|
|
77
|
+
]
|
|
78
|
+
ProcessChatsNotesStatus = Literal["ready_to_publish", "published", "not_written", "blocked", "unknown"]
|
|
79
|
+
ProcessChatsRawStatus = Literal["covered", "processed", "partial", "not_processed", "unknown"]
|
|
80
|
+
ProcessChatsCoverageStatus = Literal["valid", "missing", "invalid", "not_applicable", "unknown"]
|
|
81
|
+
ProcessChatsLinkerStatus = Literal["applied", "blocked", "skipped", "not_run", "not_applicable", "unknown"]
|
|
82
|
+
StyleRewriteApplyStatus = Literal["applied", "completed", "blocked", "failed", "waiting_external"]
|
|
83
|
+
|
|
84
|
+
|
|
85
|
+
class StyleRewriteAtomicApplyItem(ContractModel):
|
|
86
|
+
"""Typed item evidence emitted by style-rewrite apply tools."""
|
|
87
|
+
|
|
88
|
+
work_id: str = ""
|
|
89
|
+
written: bool
|
|
90
|
+
|
|
91
|
+
|
|
92
|
+
class StyleRewriteAtomicApplyResult(ContractModel):
|
|
93
|
+
"""Tool-output contract consumed by final report validation."""
|
|
94
|
+
|
|
95
|
+
schema_: Literal[
|
|
96
|
+
"medical-notes-workbench.style-rewrite-atomic-apply-agent-stdout.v1",
|
|
97
|
+
"medical-notes-workbench.style-rewrite-atomic-apply-result.v1",
|
|
98
|
+
] = Field(alias="schema")
|
|
99
|
+
status: StyleRewriteApplyStatus
|
|
100
|
+
work_id: str = ""
|
|
101
|
+
written_count: int = Field(default=0, ge=0)
|
|
102
|
+
items: tuple[StyleRewriteAtomicApplyItem, ...] = ()
|
|
103
|
+
|
|
104
|
+
|
|
105
|
+
class FixWikiPrimaryObjectiveSummary(ContractModel):
|
|
106
|
+
schema_: Literal["medical-notes-workbench.fix-wiki-primary-objective-summary.v1"] = Field(
|
|
107
|
+
"medical-notes-workbench.fix-wiki-primary-objective-summary.v1",
|
|
108
|
+
alias="schema",
|
|
109
|
+
)
|
|
110
|
+
wiki_fixed: FixWikiObjectiveStatus
|
|
111
|
+
wiki_summary: str
|
|
112
|
+
mutation_count: int = Field(ge=0)
|
|
113
|
+
written_count: int = Field(ge=0)
|
|
114
|
+
mutation_summary: str
|
|
115
|
+
graph_status: FixWikiGraphStatus
|
|
116
|
+
graph_summary: str
|
|
117
|
+
related_notes_status: FixWikiRelatedNotesStatus
|
|
118
|
+
related_notes_summary: str
|
|
119
|
+
required_report_items: list[str] = Field(
|
|
120
|
+
default_factory=lambda: [
|
|
121
|
+
"wiki_fixed",
|
|
122
|
+
"mutation_summary",
|
|
123
|
+
"graph_summary",
|
|
124
|
+
"related_notes_summary",
|
|
125
|
+
]
|
|
126
|
+
)
|
|
127
|
+
|
|
128
|
+
@field_validator("wiki_summary", "mutation_summary", "graph_summary", "related_notes_summary")
|
|
129
|
+
@classmethod
|
|
130
|
+
def _required_summary_text(cls, value: str, info: ValidationInfo) -> str:
|
|
131
|
+
cleaned = value.strip()
|
|
132
|
+
if not cleaned:
|
|
133
|
+
raise ValueError(f"{info.field_name} must be non-empty")
|
|
134
|
+
return cleaned
|
|
135
|
+
|
|
136
|
+
|
|
137
|
+
class ProcessChatsPrimaryObjectiveSummary(ContractModel):
|
|
138
|
+
schema_: Literal["medical-notes-workbench.process-chats-primary-objective-summary.v1"] = Field(
|
|
139
|
+
"medical-notes-workbench.process-chats-primary-objective-summary.v1",
|
|
140
|
+
alias="schema",
|
|
141
|
+
)
|
|
142
|
+
process_status: ProcessChatsObjectiveStatus
|
|
143
|
+
process_summary: str
|
|
144
|
+
notes_status: ProcessChatsNotesStatus
|
|
145
|
+
note_count: int = Field(ge=0, strict=True)
|
|
146
|
+
wiki_write_summary: str
|
|
147
|
+
raw_status: ProcessChatsRawStatus
|
|
148
|
+
raw_count: int = Field(ge=0, strict=True)
|
|
149
|
+
raw_summary: str
|
|
150
|
+
coverage_status: ProcessChatsCoverageStatus
|
|
151
|
+
coverage_summary: str
|
|
152
|
+
linker_status: ProcessChatsLinkerStatus
|
|
153
|
+
linker_summary: str
|
|
154
|
+
required_report_items: list[str] = Field(
|
|
155
|
+
default_factory=lambda: [
|
|
156
|
+
"process_status",
|
|
157
|
+
"raw_summary",
|
|
158
|
+
"wiki_write_summary",
|
|
159
|
+
"coverage_summary",
|
|
160
|
+
"linker_summary",
|
|
161
|
+
]
|
|
162
|
+
)
|
|
163
|
+
|
|
164
|
+
@field_validator(
|
|
165
|
+
"process_summary",
|
|
166
|
+
"wiki_write_summary",
|
|
167
|
+
"raw_summary",
|
|
168
|
+
"coverage_summary",
|
|
169
|
+
"linker_summary",
|
|
170
|
+
)
|
|
171
|
+
@classmethod
|
|
172
|
+
def _required_summary_text(cls, value: str, info: ValidationInfo) -> str:
|
|
173
|
+
cleaned = value.strip()
|
|
174
|
+
if not cleaned:
|
|
175
|
+
raise ValueError(f"{info.field_name} must be non-empty")
|
|
176
|
+
return cleaned
|
|
177
|
+
|
|
178
|
+
|
|
179
|
+
class AgentRunReportFinding(ContractModel):
|
|
180
|
+
schema_: Literal["medical-notes-workbench.agent-run-report-finding.v1"] = Field(
|
|
181
|
+
"medical-notes-workbench.agent-run-report-finding.v1",
|
|
182
|
+
alias="schema",
|
|
183
|
+
)
|
|
184
|
+
code: AgentRunReportFindingCode
|
|
185
|
+
severity: AgentRunReportSeverity
|
|
186
|
+
source: str
|
|
187
|
+
message: str
|
|
188
|
+
next_action: str
|
|
189
|
+
source_field: str = ""
|
|
190
|
+
expected: str = ""
|
|
191
|
+
actual: str = ""
|
|
192
|
+
path: str = ""
|
|
193
|
+
artifact_name: str = ""
|
|
194
|
+
tool_error_type: str = ""
|
|
195
|
+
evidence: JsonObject = Field(default_factory=dict)
|
|
196
|
+
|
|
197
|
+
@field_validator("source", "message", "next_action")
|
|
198
|
+
@classmethod
|
|
199
|
+
def _required_text(cls, value: str, info: ValidationInfo) -> str:
|
|
200
|
+
cleaned = value.strip()
|
|
201
|
+
if not cleaned:
|
|
202
|
+
raise ValueError(f"{info.field_name} must be non-empty")
|
|
203
|
+
return cleaned
|
|
204
|
+
|
|
205
|
+
|
|
206
|
+
class AgentRunReportValidation(ContractModel):
|
|
207
|
+
schema_: Literal["medical-notes-workbench.agent-run-report-validation.v1"] = Field(
|
|
208
|
+
"medical-notes-workbench.agent-run-report-validation.v1",
|
|
209
|
+
alias="schema",
|
|
210
|
+
)
|
|
211
|
+
phase: Literal["validate_agent_run_report"] = "validate_agent_run_report"
|
|
212
|
+
status: AgentRunReportValidationStatus
|
|
213
|
+
workflow: str = ""
|
|
214
|
+
run_id: str = ""
|
|
215
|
+
workflow_status: str = ""
|
|
216
|
+
workflow_phase: str = ""
|
|
217
|
+
receipt_status: str = ""
|
|
218
|
+
blocked_reason: str = ""
|
|
219
|
+
next_action: str = ""
|
|
220
|
+
final_report_present: bool = False
|
|
221
|
+
transcript_present: bool = False
|
|
222
|
+
workflow_payload_path: str = ""
|
|
223
|
+
transcript_path: str = ""
|
|
224
|
+
final_report_path: str = ""
|
|
225
|
+
primary_objective: (
|
|
226
|
+
FixWikiPrimaryObjectiveSummary | ProcessChatsPrimaryObjectiveSummary | WorkflowPrimaryObjectiveSummary | None
|
|
227
|
+
) = None
|
|
228
|
+
happy_path_metrics: HappyPathRunMetrics | None = None
|
|
229
|
+
public_report_view_model: WorkflowPublicReportViewModel | None = None
|
|
230
|
+
transcript_audit: WorkflowTranscriptAuditResult | None = None
|
|
231
|
+
finding_count: int = Field(ge=0)
|
|
232
|
+
findings: list[AgentRunReportFinding] = Field(default_factory=list)
|
|
233
|
+
|
|
234
|
+
@model_validator(mode="after")
|
|
235
|
+
def _validate_report_contract(self) -> AgentRunReportValidation:
|
|
236
|
+
if self.finding_count != len(self.findings):
|
|
237
|
+
raise ValueError("finding_count must match findings length")
|
|
238
|
+
if self.findings and self.status != "blocked":
|
|
239
|
+
raise ValueError("findings require blocked status")
|
|
240
|
+
if self.status == "blocked" and not self.next_action.strip():
|
|
241
|
+
raise ValueError("blocked validation requires next_action")
|
|
242
|
+
return self
|