mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
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- package/package.json +45 -0
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"""Typed linker runtime boundary for `/mednotes:link` and `/mednotes:link-body`.
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The linker adapter still returns operational JSON. This boundary validates that
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JSON into facts, but it does not name the final workflow outcome. The only
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machine event emitted here is `LinkRuntimeObservedEvent`; `LinkMachine` guards
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own the operational leaf-state priority.
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"""
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from typing import Literal
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from pydantic import ConfigDict, Field, StrictStr, model_validator
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from mednotes.domains.wiki.common import ValidationError
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from mednotes.domains.wiki.contracts.curator import CuratorBatchPlan
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from mednotes.domains.wiki.contracts.related_notes_runtime import LinkRelatedNotesSync, RelatedNotesRecoveryState
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from mednotes.domains.wiki.contracts.vocabulary_ingestion import VocabularyBootstrapPlan
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from mednotes.domains.wiki.flows.link.link_fsm import LINK_BODY_PUBLIC_WORKFLOW, LINK_WORKFLOW, LinkFsmFacts
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from mednotes.domains.wiki.flows.link.link_machine import (
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LinkMode,
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LinkRuntimeObservation,
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LinkRuntimeObservedEvent,
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LinkState,
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)
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from mednotes.kernel.base import ContractModel, JsonObject, JsonObjectAdapter
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class LinkerRunResult(ContractModel):
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"""Typed lens for linker operation JSON before it reaches LinkMachine.
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The lower-level linker emits one contract for diagnosis and another for
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apply. Missing or unknown schemas are contract errors; defaults here may
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non-contract JSON.
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"""
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schema_id: Literal[
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"medical-notes-workbench.link-diagnosis.v1",
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"medical-notes-workbench.link-run.v1",
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"medical-notes-workbench.link-run-receipt.v1",
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] = Field(alias="schema")
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phase: StrictStr = ""
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status: StrictStr = ""
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returncode: int = Field(default=0, ge=0, strict=True)
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files_changed: int = Field(default=0, ge=0, strict=True)
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links_planned: int = Field(default=0, ge=0, strict=True)
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links_rewritten: int = Field(default=0, ge=0, strict=True)
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blocker_count: int = Field(default=0, ge=0, strict=True)
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related_notes_applied: bool = Field(default=False, strict=True)
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changed_files: list[str] = Field(default_factory=list)
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required_inputs: list[str] = Field(default_factory=list)
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diagnosis_path: StrictStr = ""
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receipt_path: StrictStr = ""
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error: StrictStr = ""
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parse_error: StrictStr = ""
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related_notes_sync: LinkRelatedNotesSync | None = None
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related_notes_recovery_state: RelatedNotesRecoveryState = Field(default_factory=RelatedNotesRecoveryState)
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body_term_linker: JsonObject | None = None
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vocabulary_db_path: StrictStr = ""
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vocabulary_bootstrap: VocabularyBootstrapPlan | None = None
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vocabulary_curator_batch_plan: CuratorBatchPlan | None = None
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vocabulary_curator_batch_plan_path: StrictStr = ""
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operation_payload: JsonObject = Field(default_factory=dict)
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def _validate_operation_contract(self) -> LinkerRunResult:
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raise ValueError("status is required for linker runtime contract")
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@classmethod
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def from_payload(cls, value: object) -> LinkerRunResult:
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return value
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raw = _raw_payload(value)
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related = _raw_field(raw, "related_notes_sync")
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bootstrap = _raw_field(raw, "vocabulary_bootstrap")
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curator_batch_plan = _raw_field(raw, "vocabulary_curator_batch_plan")
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return cls.model_validate(
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{
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"schema": _raw_text_field(raw, "schema"),
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"phase": _raw_text_field(raw, "phase"),
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"status": _raw_text_field(raw, "status"),
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"blocked_reason": _raw_text_field(raw, "blocked_reason"),
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"next_action": _raw_text_field(raw, "next_action"),
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"returncode": _raw_field(raw, "returncode", 0),
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"files_changed": _raw_field(raw, "files_changed", 0),
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"links_planned": _raw_field(raw, "links_planned", 0),
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"links_rewritten": _raw_field(raw, "links_rewritten", 0),
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"blocker_count": _raw_field(raw, "blocker_count", 0),
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"related_notes_applied": _raw_field(raw, "related_notes_applied", False),
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"changed_files": [str(item) for item in _raw_list(_raw_field(raw, "changed_files")) if item],
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"required_inputs": [str(item) for item in _raw_list(_raw_field(raw, "required_inputs")) if item],
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"diagnosis_path": _raw_text_field(raw, "diagnosis_path"),
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"receipt_path": _raw_text_field(raw, "receipt_path"),
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"error": _raw_text_field(raw, "error"),
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"parse_error": _raw_text_field(raw, "parse_error"),
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"stale_reason": _raw_text_field(raw, "stale_reason"),
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"related_notes_sync": LinkRelatedNotesSync.from_payload(related) if isinstance(related, dict) else None,
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"related_notes_recovery_state": RelatedNotesRecoveryState.from_payload(
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_raw_field(raw, "related_notes_recovery_state")
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),
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"body_term_linker": _raw_payload(_raw_field(raw, "body_term_linker")) or None,
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"vocabulary_db_path": _raw_text_field(raw, "vocabulary_db_path"),
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"vocabulary_bootstrap": (
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VocabularyBootstrapPlan.model_validate(bootstrap) if bootstrap is not None else None
|
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114
|
+
),
|
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115
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+
"vocabulary_curator_batch_plan": (
|
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116
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+
CuratorBatchPlan.model_validate(curator_batch_plan) if _has_payload(curator_batch_plan) else None
|
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117
|
+
),
|
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118
|
+
"vocabulary_curator_batch_plan_path": _raw_text_field(raw, "vocabulary_curator_batch_plan_path"),
|
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119
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+
"operation_payload": raw,
|
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120
|
+
}
|
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121
|
+
)
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122
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+
|
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123
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+
|
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124
|
+
def link_fsm_facts_from_linker_result(
|
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125
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+
result: JsonObject,
|
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126
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+
*,
|
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127
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+
run_id: str,
|
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128
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+
mode: Literal["diagnose", "apply"],
|
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129
|
+
include_related_notes: bool,
|
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130
|
+
version_control_safety: VersionControlSafety | dict[str, object],
|
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131
|
+
) -> LinkFsmFacts:
|
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132
|
+
"""Translate validated linker facts into the single LinkMachine observation event."""
|
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133
|
+
|
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134
|
+
linker_result = LinkerRunResult.from_payload(result)
|
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135
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+
link_mode = LinkMode.FULL if include_related_notes else LinkMode.BODY_ONLY
|
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136
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+
workflow = LINK_WORKFLOW if link_mode == LinkMode.FULL else LINK_BODY_PUBLIC_WORKFLOW
|
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137
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+
observation = _observation_for_linker_result(
|
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138
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+
linker_result,
|
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139
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+
operation=mode,
|
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140
|
+
link_mode=link_mode,
|
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141
|
+
)
|
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142
|
+
event = LinkRuntimeObservedEvent(
|
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143
|
+
workflow=workflow,
|
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144
|
+
run_id=run_id,
|
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145
|
+
current_state=LinkState.DIAGNOSING_GRAPH.value,
|
|
146
|
+
observation=observation,
|
|
147
|
+
audit_evidence=_audit_evidence(linker_result, mode=mode, include_related_notes=include_related_notes),
|
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148
|
+
)
|
|
149
|
+
changed_files = list(linker_result.changed_files)
|
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150
|
+
changed_count = max(linker_result.files_changed, len(changed_files))
|
|
151
|
+
return LinkFsmFacts(
|
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152
|
+
workflow=workflow,
|
|
153
|
+
mode=link_mode,
|
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154
|
+
run_id=run_id,
|
|
155
|
+
initial_state=LinkState.DIAGNOSING_GRAPH,
|
|
156
|
+
event=event,
|
|
157
|
+
changed_files=changed_files,
|
|
158
|
+
mutated=mode == "apply" and changed_count > 0,
|
|
159
|
+
artifacts=_artifacts(linker_result),
|
|
160
|
+
version_control_safety=_version_control_safety_with_file_count(
|
|
161
|
+
version_control_safety,
|
|
162
|
+
changed_file_count=changed_count,
|
|
163
|
+
),
|
|
164
|
+
error_context=_error_context(linker_result),
|
|
165
|
+
)
|
|
166
|
+
|
|
167
|
+
|
|
168
|
+
def _observation_for_linker_result(
|
|
169
|
+
result: LinkerRunResult,
|
|
170
|
+
*,
|
|
171
|
+
operation: Literal["diagnose", "apply"],
|
|
172
|
+
link_mode: LinkMode,
|
|
173
|
+
) -> LinkRuntimeObservation:
|
|
174
|
+
body_reason = _body_linker_blocked_reason(result)
|
|
175
|
+
related_blocked = link_mode == LinkMode.FULL and _related_notes_blocked(result)
|
|
176
|
+
vocabulary_bootstrap_required = link_mode == LinkMode.FULL and body_reason == "vocabulary_bootstrap_required"
|
|
177
|
+
vocabulary_curator_required = link_mode == LinkMode.FULL and body_reason == "vocabulary_semantic_ingestion_pending"
|
|
178
|
+
vocabulary_db_path = _vocabulary_db_path(result)
|
|
179
|
+
if vocabulary_bootstrap_required and not vocabulary_db_path:
|
|
180
|
+
raise ValueError("vocabulary_db_path is required when vocabulary bootstrap is required")
|
|
181
|
+
return LinkRuntimeObservation(
|
|
182
|
+
mode=link_mode,
|
|
183
|
+
operation=operation,
|
|
184
|
+
failed=_failed(result),
|
|
185
|
+
stale_diagnosis=_stale_diagnosis(result),
|
|
186
|
+
changed_file_count=max(result.files_changed, len(result.changed_files)),
|
|
187
|
+
planned_link_count=result.links_planned,
|
|
188
|
+
rewritten_link_count=result.links_rewritten,
|
|
189
|
+
blocker_count=max(result.blocker_count, 1 if result.status == "blocked" else 0),
|
|
190
|
+
body_linker_blocked=bool(body_reason),
|
|
191
|
+
body_linker_blocked_reason=body_reason,
|
|
192
|
+
related_notes_present=result.related_notes_sync is not None,
|
|
193
|
+
related_notes_blocked=related_blocked,
|
|
194
|
+
related_notes_waiting_external=link_mode == LinkMode.FULL and _related_notes_waiting_external(result),
|
|
195
|
+
related_notes_applied=result.related_notes_applied,
|
|
196
|
+
vocabulary_bootstrap_required=vocabulary_bootstrap_required,
|
|
197
|
+
vocabulary_curator_required=vocabulary_curator_required,
|
|
198
|
+
vocabulary_db_path=vocabulary_db_path,
|
|
199
|
+
vocabulary_curator_batch_plan_path=_vocabulary_curator_batch_plan_path(result),
|
|
200
|
+
vocabulary_curator_work_item_count=_vocabulary_curator_work_item_count(result),
|
|
201
|
+
next_action=_next_action_from_facts(result),
|
|
202
|
+
reason_code=_reason_code_from_facts(result),
|
|
203
|
+
related_notes_export_recovery_required=bool(_related_notes_export_recovery_reason(result)),
|
|
204
|
+
related_notes_export_recovery_reason=_related_notes_export_recovery_reason(result),
|
|
205
|
+
related_notes_recovery_state=result.related_notes_recovery_state.to_payload(),
|
|
206
|
+
)
|
|
207
|
+
|
|
208
|
+
|
|
209
|
+
def _failed(result: LinkerRunResult) -> bool:
|
|
210
|
+
if result.error.strip() or result.parse_error.strip():
|
|
211
|
+
return True
|
|
212
|
+
return result.returncode not in {0, 3}
|
|
213
|
+
|
|
214
|
+
|
|
215
|
+
def _stale_diagnosis(result: LinkerRunResult) -> bool:
|
|
216
|
+
if result.blocked_reason == "stale_diagnosis":
|
|
217
|
+
return True
|
|
218
|
+
return bool(result.stale_reason.strip())
|
|
219
|
+
|
|
220
|
+
|
|
221
|
+
def _related_notes_blocked(result: LinkerRunResult) -> bool:
|
|
222
|
+
related = result.related_notes_sync
|
|
223
|
+
return bool(
|
|
224
|
+
result.blocked_reason == "related_notes_blocked"
|
|
225
|
+
or (related is not None and (related.status == "blocked" or bool(related.blocked_reason)))
|
|
226
|
+
)
|
|
227
|
+
|
|
228
|
+
|
|
229
|
+
RELATED_NOTES_EXPORT_RECOVERY_REASONS = frozenset(
|
|
230
|
+
{
|
|
231
|
+
"related_notes_hash_mismatch",
|
|
232
|
+
"related_notes_export_stale",
|
|
233
|
+
"related_notes_vault_mismatch",
|
|
234
|
+
}
|
|
235
|
+
)
|
|
236
|
+
|
|
237
|
+
|
|
238
|
+
def _related_notes_export_recovery_reason(result: LinkerRunResult) -> str:
|
|
239
|
+
"""Expose a recoverable Related Notes export fact without executing recovery."""
|
|
240
|
+
|
|
241
|
+
related = result.related_notes_sync
|
|
242
|
+
reason = related.blocked_reason if related is not None else ""
|
|
243
|
+
return reason if reason in RELATED_NOTES_EXPORT_RECOVERY_REASONS else ""
|
|
244
|
+
|
|
245
|
+
|
|
246
|
+
def _related_notes_waiting_external(result: LinkerRunResult) -> bool:
|
|
247
|
+
recovery = result.related_notes_recovery_state
|
|
248
|
+
return (
|
|
249
|
+
_related_notes_blocked(result)
|
|
250
|
+
and recovery.status == "waiting_for_retry"
|
|
251
|
+
and recovery.blocked_reason
|
|
252
|
+
in {
|
|
253
|
+
"related_notes_headless_quota_exhausted",
|
|
254
|
+
"related_notes_headless_time_budget_exhausted",
|
|
255
|
+
}
|
|
256
|
+
)
|
|
257
|
+
|
|
258
|
+
|
|
259
|
+
class _BodyTermLinkerFields(ContractModel):
|
|
260
|
+
"""Typed body-linker blocker fields used to derive link observation facts."""
|
|
261
|
+
|
|
262
|
+
model_config = ConfigDict(extra="ignore")
|
|
263
|
+
|
|
264
|
+
blocked_reason: StrictStr = ""
|
|
265
|
+
|
|
266
|
+
|
|
267
|
+
def _body_linker_blocked_reason(result: LinkerRunResult) -> str:
|
|
268
|
+
return _BodyTermLinkerFields.model_validate(result.body_term_linker or {}).blocked_reason
|
|
269
|
+
|
|
270
|
+
|
|
271
|
+
def _reason_code_from_facts(result: LinkerRunResult) -> str:
|
|
272
|
+
if _stale_diagnosis(result):
|
|
273
|
+
return "stale_diagnosis"
|
|
274
|
+
if _body_linker_blocked_reason(result):
|
|
275
|
+
body_reason = _body_linker_blocked_reason(result)
|
|
276
|
+
if body_reason == "vocabulary_semantic_ingestion_pending":
|
|
277
|
+
return "vocabulary_curator_required"
|
|
278
|
+
return body_reason
|
|
279
|
+
recovery_reason = _related_notes_export_recovery_reason(result)
|
|
280
|
+
if recovery_reason:
|
|
281
|
+
return recovery_reason
|
|
282
|
+
if _related_notes_blocked(result):
|
|
283
|
+
return "related_notes_blocked"
|
|
284
|
+
if result.blocked_reason.strip():
|
|
285
|
+
return result.blocked_reason.strip()
|
|
286
|
+
if result.error.strip():
|
|
287
|
+
return result.error.strip()
|
|
288
|
+
if result.parse_error.strip():
|
|
289
|
+
return result.parse_error.strip()
|
|
290
|
+
return ""
|
|
291
|
+
|
|
292
|
+
|
|
293
|
+
def _next_action_from_facts(result: LinkerRunResult) -> str:
|
|
294
|
+
if result.next_action.strip():
|
|
295
|
+
return result.next_action.strip()
|
|
296
|
+
reason = _reason_code_from_facts(result)
|
|
297
|
+
match reason:
|
|
298
|
+
case "stale_diagnosis":
|
|
299
|
+
return "Repetir a conferencia de links e aplicar o novo diagnostico."
|
|
300
|
+
case "vocabulary_bootstrap_required":
|
|
301
|
+
return "Preparar o vocabulario pela rota oficial e repetir /mednotes:link."
|
|
302
|
+
case "vocabulary_semantic_ingestion_pending" | "vocabulary_curator_required":
|
|
303
|
+
return "Aplicar a curadoria semantica oficial e repetir /mednotes:link."
|
|
304
|
+
case "related_notes_blocked":
|
|
305
|
+
return "Atualizar o export do Related Notes e repetir /mednotes:link."
|
|
306
|
+
case "graph_blockers":
|
|
307
|
+
return "Resolver os bloqueios de grafo pela rota oficial e repetir /mednotes:link."
|
|
308
|
+
case "body_linker_blocked":
|
|
309
|
+
return "Resolver o bloqueio informado pelo linker e repetir /mednotes:link."
|
|
310
|
+
case _:
|
|
311
|
+
return ""
|
|
312
|
+
|
|
313
|
+
|
|
314
|
+
def _audit_evidence(
|
|
315
|
+
result: LinkerRunResult,
|
|
316
|
+
*,
|
|
317
|
+
mode: Literal["diagnose", "apply"],
|
|
318
|
+
include_related_notes: bool,
|
|
319
|
+
) -> JsonObject:
|
|
320
|
+
recovery = result.related_notes_recovery_state
|
|
321
|
+
operation: JsonObject = {
|
|
322
|
+
"schema": result.schema_id,
|
|
323
|
+
"phase": result.phase,
|
|
324
|
+
"status": result.status,
|
|
325
|
+
"blocked_reason": _reason_code_from_facts(result),
|
|
326
|
+
"next_action": _next_action_from_facts(result),
|
|
327
|
+
"returncode": result.returncode,
|
|
328
|
+
"files_changed": result.files_changed,
|
|
329
|
+
"links_planned": result.links_planned,
|
|
330
|
+
"links_rewritten": result.links_rewritten,
|
|
331
|
+
"blocker_count": result.blocker_count,
|
|
332
|
+
"related_notes_applied": result.related_notes_applied,
|
|
333
|
+
"changed_files": list(result.changed_files),
|
|
334
|
+
"required_inputs": list(result.required_inputs),
|
|
335
|
+
"diagnosis_path": result.diagnosis_path,
|
|
336
|
+
"receipt_path": result.receipt_path,
|
|
337
|
+
}
|
|
338
|
+
if result.related_notes_sync is not None:
|
|
339
|
+
operation["related_notes_sync"] = result.related_notes_sync.to_payload()
|
|
340
|
+
if result.body_term_linker is not None:
|
|
341
|
+
operation["body_term_linker"] = result.body_term_linker
|
|
342
|
+
if result.vocabulary_bootstrap is not None:
|
|
343
|
+
operation["vocabulary_bootstrap"] = result.vocabulary_bootstrap.to_payload()
|
|
344
|
+
if result.vocabulary_curator_batch_plan is not None:
|
|
345
|
+
operation["vocabulary_curator_batch_plan"] = result.vocabulary_curator_batch_plan.to_payload()
|
|
346
|
+
if recovery:
|
|
347
|
+
operation["related_notes_recovery_state"] = recovery.to_payload()
|
|
348
|
+
evidence: JsonObject = {
|
|
349
|
+
"adapter_schema": result.schema_id,
|
|
350
|
+
"adapter_phase": result.phase,
|
|
351
|
+
"adapter_status": result.status,
|
|
352
|
+
"adapter_reason": _reason_code_from_facts(result),
|
|
353
|
+
"operation": operation,
|
|
354
|
+
"mode": mode,
|
|
355
|
+
"include_related_notes": include_related_notes,
|
|
356
|
+
"counts": {
|
|
357
|
+
"files_changed": max(result.files_changed, len(result.changed_files)),
|
|
358
|
+
"links_planned": result.links_planned,
|
|
359
|
+
"links_rewritten": result.links_rewritten,
|
|
360
|
+
"blocker_count": result.blocker_count,
|
|
361
|
+
"related_notes_applied": result.related_notes_applied,
|
|
362
|
+
"fresh_record_count": recovery.fresh_record_count,
|
|
363
|
+
"remaining_count": recovery.remaining_count,
|
|
364
|
+
"total_note_count": recovery.total_note_count,
|
|
365
|
+
"reused_count": recovery.reused_count,
|
|
366
|
+
"embedded_count": recovery.embedded_count,
|
|
367
|
+
},
|
|
368
|
+
}
|
|
369
|
+
if result.required_inputs:
|
|
370
|
+
evidence["required_inputs"] = list(result.required_inputs)
|
|
371
|
+
if recovery:
|
|
372
|
+
evidence["related_notes_recovery_state"] = recovery.to_payload()
|
|
373
|
+
if result.stale_reason:
|
|
374
|
+
evidence["stale_reason"] = result.stale_reason
|
|
375
|
+
for key in (
|
|
376
|
+
"expected_git_status_hash",
|
|
377
|
+
"actual_git_status_hash",
|
|
378
|
+
"expected_git_head",
|
|
379
|
+
"actual_git_head",
|
|
380
|
+
):
|
|
381
|
+
try:
|
|
382
|
+
value = result.operation_payload[key]
|
|
383
|
+
except KeyError:
|
|
384
|
+
continue
|
|
385
|
+
if isinstance(value, str) and value.strip():
|
|
386
|
+
evidence[key] = value
|
|
387
|
+
return JsonObjectAdapter.validate_python(evidence)
|
|
388
|
+
|
|
389
|
+
|
|
390
|
+
def _error_context(result: LinkerRunResult) -> JsonObject:
|
|
391
|
+
reason = _reason_code_from_facts(result)
|
|
392
|
+
if not (
|
|
393
|
+
_failed(result)
|
|
394
|
+
or _stale_diagnosis(result)
|
|
395
|
+
or result.blocker_count
|
|
396
|
+
or _body_linker_blocked_reason(result)
|
|
397
|
+
or _related_notes_blocked(result)
|
|
398
|
+
):
|
|
399
|
+
return {}
|
|
400
|
+
summary = result.error or result.parse_error or result.blocked_reason or reason
|
|
401
|
+
return JsonObjectAdapter.validate_python(
|
|
402
|
+
{
|
|
403
|
+
"schema": "medical-notes-workbench.error-context.v1",
|
|
404
|
+
"phase": result.phase or "link",
|
|
405
|
+
"blocked_reason": reason,
|
|
406
|
+
"root_cause": reason,
|
|
407
|
+
"error_summary": summary,
|
|
408
|
+
"suggested_fix": _next_action_from_facts(result),
|
|
409
|
+
"next_action": _next_action_from_facts(result),
|
|
410
|
+
"retry_scope": "link_official_route",
|
|
411
|
+
"human_decision_required": False,
|
|
412
|
+
"missing_inputs": list(result.required_inputs),
|
|
413
|
+
}
|
|
414
|
+
)
|
|
415
|
+
|
|
416
|
+
|
|
417
|
+
def _vocabulary_db_path(result: LinkerRunResult) -> str:
|
|
418
|
+
if result.vocabulary_bootstrap is not None:
|
|
419
|
+
return result.vocabulary_bootstrap.db_path.strip()
|
|
420
|
+
return result.vocabulary_db_path
|
|
421
|
+
|
|
422
|
+
|
|
423
|
+
def _vocabulary_curator_batch_plan_path(result: LinkerRunResult) -> str:
|
|
424
|
+
return result.vocabulary_curator_batch_plan_path
|
|
425
|
+
|
|
426
|
+
|
|
427
|
+
def _vocabulary_curator_work_item_count(result: LinkerRunResult) -> int:
|
|
428
|
+
if result.vocabulary_curator_batch_plan is None:
|
|
429
|
+
return 1
|
|
430
|
+
return max(1, result.vocabulary_curator_batch_plan.item_count)
|
|
431
|
+
|
|
432
|
+
|
|
433
|
+
def _artifacts(result: LinkerRunResult) -> JsonObject:
|
|
434
|
+
artifacts: JsonObject = {}
|
|
435
|
+
if result.diagnosis_path:
|
|
436
|
+
artifacts["diagnosis_path"] = result.diagnosis_path
|
|
437
|
+
if result.receipt_path:
|
|
438
|
+
artifacts["receipt_path"] = result.receipt_path
|
|
439
|
+
return artifacts
|
|
440
|
+
|
|
441
|
+
|
|
442
|
+
def _version_control_safety_with_file_count(
|
|
443
|
+
value: VersionControlSafety | dict[str, object],
|
|
444
|
+
*,
|
|
445
|
+
changed_file_count: int,
|
|
446
|
+
) -> VersionControlSafety:
|
|
447
|
+
safety = value if isinstance(value, VersionControlSafety) else VersionControlSafety.model_validate(value)
|
|
448
|
+
if safety.changed_file_count == changed_file_count:
|
|
449
|
+
return safety
|
|
450
|
+
raise ValidationError(
|
|
451
|
+
"version_control_safety_evidence_mismatch: guard evidence changed_file_count "
|
|
452
|
+
"does not match linker result"
|
|
453
|
+
)
|
|
454
|
+
|
|
455
|
+
|
|
456
|
+
def _raw_payload(value: object) -> JsonObject:
|
|
457
|
+
if isinstance(value, ContractModel):
|
|
458
|
+
return JsonObjectAdapter.validate_python(value.to_payload())
|
|
459
|
+
if isinstance(value, dict):
|
|
460
|
+
return JsonObjectAdapter.validate_python(dict(value))
|
|
461
|
+
return {}
|
|
462
|
+
|
|
463
|
+
|
|
464
|
+
def _has_payload(value: object) -> bool:
|
|
465
|
+
"""Treat empty optional operation objects as absent, not as valid plans."""
|
|
466
|
+
|
|
467
|
+
return isinstance(value, dict) and bool(value)
|
|
468
|
+
|
|
469
|
+
|
|
470
|
+
def _raw_list(value: object) -> list[object]:
|
|
471
|
+
if isinstance(value, list):
|
|
472
|
+
return list(value)
|
|
473
|
+
return []
|
|
474
|
+
|
|
475
|
+
|
|
476
|
+
def _raw_field(raw: JsonObject, key: str, default: object = None) -> object:
|
|
477
|
+
try:
|
|
478
|
+
return raw[key]
|
|
479
|
+
except KeyError:
|
|
480
|
+
return default
|
|
481
|
+
|
|
482
|
+
|
|
483
|
+
def _raw_text_field(raw: JsonObject, key: str) -> object:
|
|
484
|
+
value = _raw_field(raw, key, "")
|
|
485
|
+
return "" if value is None else value
|
|
@@ -0,0 +1,183 @@
|
|
|
1
|
+
"""Trigger context helpers for link graph repair."""
|
|
2
|
+
from __future__ import annotations
|
|
3
|
+
|
|
4
|
+
import json
|
|
5
|
+
from pathlib import Path
|
|
6
|
+
from typing import Literal
|
|
7
|
+
|
|
8
|
+
from pydantic import Field, StrictBool, StrictStr, TypeAdapter, model_validator
|
|
9
|
+
from pydantic import ValidationError as PydanticValidationError
|
|
10
|
+
|
|
11
|
+
from mednotes.domains.wiki.capabilities.notes.raw_chats import atomic_write_text
|
|
12
|
+
from mednotes.domains.wiki.common import ValidationError
|
|
13
|
+
from mednotes.kernel.base import ContractModel, JsonObject, JsonObjectAdapter
|
|
14
|
+
|
|
15
|
+
LINK_TRIGGER_CONTEXT_SCHEMA = "medical-notes-workbench.link-trigger-context.v1"
|
|
16
|
+
|
|
17
|
+
ChangeType = Literal["created", "modified", "deleted", "renamed", "moved", "merged"]
|
|
18
|
+
ContentChange = Literal["text", "metadata", "structural", "image_only"]
|
|
19
|
+
_TRIGGER_BY_CHANGE = {
|
|
20
|
+
"created": "note_created",
|
|
21
|
+
"modified": "note_modified",
|
|
22
|
+
"deleted": "note_deleted",
|
|
23
|
+
"renamed": "note_renamed",
|
|
24
|
+
"moved": "note_moved",
|
|
25
|
+
"merged": "note_merged",
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
|
|
29
|
+
class LinkTriggerChangedNote(ContractModel):
|
|
30
|
+
"""One changed-note record that may force graph or Related Notes repair."""
|
|
31
|
+
|
|
32
|
+
change_type: ChangeType
|
|
33
|
+
content_change: ContentChange = "text"
|
|
34
|
+
path: StrictStr | None = None
|
|
35
|
+
old_path: StrictStr | None = None
|
|
36
|
+
title: StrictStr | None = None
|
|
37
|
+
old_title: StrictStr | None = None
|
|
38
|
+
replacement_path: StrictStr | None = None
|
|
39
|
+
replacement_title: StrictStr | None = None
|
|
40
|
+
before_hash: StrictStr | None = None
|
|
41
|
+
after_hash: StrictStr | None = None
|
|
42
|
+
reason: StrictStr | None = None
|
|
43
|
+
reasons: list[StrictStr] = Field(default_factory=list)
|
|
44
|
+
|
|
45
|
+
@model_validator(mode="after")
|
|
46
|
+
def _structural_changes_name_origin_and_destination(self) -> LinkTriggerChangedNote:
|
|
47
|
+
if self.change_type in {"renamed", "moved", "merged"}:
|
|
48
|
+
has_old = bool(self.old_title or self.old_path)
|
|
49
|
+
has_new = bool(self.title or self.path or self.replacement_title or self.replacement_path)
|
|
50
|
+
if not has_old or not has_new:
|
|
51
|
+
raise ValueError(f"link trigger context {self.change_type} exige origem e destino explícitos.")
|
|
52
|
+
if self.change_type == "deleted" and not (self.old_title or self.old_path):
|
|
53
|
+
raise ValueError("link trigger context deleted exige old_title ou old_path.")
|
|
54
|
+
return self
|
|
55
|
+
|
|
56
|
+
def clean_payload(self) -> JsonObject:
|
|
57
|
+
payload = self.model_dump(mode="json", exclude_none=True)
|
|
58
|
+
if not self.reasons:
|
|
59
|
+
payload.pop("reasons", None)
|
|
60
|
+
return JsonObjectAdapter.validate_python(payload)
|
|
61
|
+
|
|
62
|
+
def affected_path(self) -> str:
|
|
63
|
+
return self.path or self.old_path or ""
|
|
64
|
+
|
|
65
|
+
|
|
66
|
+
class LinkTriggerContext(ContractModel):
|
|
67
|
+
"""Closed boundary for workflow-provided linker trigger context."""
|
|
68
|
+
|
|
69
|
+
schema_id: Literal["medical-notes-workbench.link-trigger-context.v1"] = Field(
|
|
70
|
+
default=LINK_TRIGGER_CONTEXT_SCHEMA,
|
|
71
|
+
alias="schema",
|
|
72
|
+
)
|
|
73
|
+
source_workflow: StrictStr = Field(min_length=1)
|
|
74
|
+
changed_notes: list[LinkTriggerChangedNote]
|
|
75
|
+
catalog_changed: StrictBool = False
|
|
76
|
+
related_notes_export_changed: StrictBool = False
|
|
77
|
+
batch_id: StrictStr | None = None
|
|
78
|
+
|
|
79
|
+
def clean_payload(self) -> JsonObject:
|
|
80
|
+
payload = {
|
|
81
|
+
"schema": self.schema_id,
|
|
82
|
+
"source_workflow": self.source_workflow,
|
|
83
|
+
"changed_notes": [note.clean_payload() for note in self.changed_notes],
|
|
84
|
+
"catalog_changed": self.catalog_changed,
|
|
85
|
+
"related_notes_export_changed": self.related_notes_export_changed,
|
|
86
|
+
}
|
|
87
|
+
if self.batch_id:
|
|
88
|
+
payload["batch_id"] = self.batch_id
|
|
89
|
+
return JsonObjectAdapter.validate_python(payload)
|
|
90
|
+
|
|
91
|
+
def image_only(self) -> bool:
|
|
92
|
+
if self.catalog_changed or self.related_notes_export_changed:
|
|
93
|
+
return False
|
|
94
|
+
return bool(self.changed_notes) and all(note.content_change == "image_only" for note in self.changed_notes)
|
|
95
|
+
|
|
96
|
+
|
|
97
|
+
LinkTriggerContextAdapter = TypeAdapter(LinkTriggerContext)
|
|
98
|
+
|
|
99
|
+
|
|
100
|
+
def _trigger_context(payload: object) -> LinkTriggerContext:
|
|
101
|
+
try:
|
|
102
|
+
return LinkTriggerContextAdapter.validate_python(payload)
|
|
103
|
+
except PydanticValidationError as exc:
|
|
104
|
+
first = exc.errors()[0] if exc.errors() else {}
|
|
105
|
+
loc = ".".join(str(part) for part in first.get("loc", ())) or "$"
|
|
106
|
+
message = str(first.get("msg") or "payload inválido")
|
|
107
|
+
raise ValidationError(f"link trigger context inválido: {loc}: {message}") from exc
|
|
108
|
+
|
|
109
|
+
|
|
110
|
+
def _trigger_context_or_none(payload: object | None) -> LinkTriggerContext | None:
|
|
111
|
+
return None if payload is None else _trigger_context(payload)
|
|
112
|
+
|
|
113
|
+
|
|
114
|
+
def validate_trigger_context(payload: object) -> JsonObject:
|
|
115
|
+
return _trigger_context(payload).clean_payload()
|
|
116
|
+
|
|
117
|
+
|
|
118
|
+
def load_trigger_context(path: Path | None) -> JsonObject | None:
|
|
119
|
+
if path is None:
|
|
120
|
+
return None
|
|
121
|
+
try:
|
|
122
|
+
payload = json.loads(path.read_text(encoding="utf-8"))
|
|
123
|
+
except FileNotFoundError as exc:
|
|
124
|
+
raise ValidationError(f"Trigger context não encontrado: {path}") from exc
|
|
125
|
+
except json.JSONDecodeError as exc:
|
|
126
|
+
raise ValidationError(f"Trigger context inválido: {path}: {exc}") from exc
|
|
127
|
+
return validate_trigger_context(payload)
|
|
128
|
+
|
|
129
|
+
|
|
130
|
+
def write_trigger_context(path: Path, payload: object) -> Path:
|
|
131
|
+
clean = validate_trigger_context(payload)
|
|
132
|
+
atomic_write_text(path, json.dumps(clean, ensure_ascii=False, indent=2) + "\n")
|
|
133
|
+
return path
|
|
134
|
+
|
|
135
|
+
|
|
136
|
+
def derive_triggers(payload: object | None) -> list[str]:
|
|
137
|
+
context = _trigger_context_or_none(payload)
|
|
138
|
+
if context is None:
|
|
139
|
+
return ["manual_request"]
|
|
140
|
+
if context.image_only():
|
|
141
|
+
return ["image_only_change"]
|
|
142
|
+
triggers: list[str] = []
|
|
143
|
+
for note in context.changed_notes:
|
|
144
|
+
trigger = _TRIGGER_BY_CHANGE[note.change_type]
|
|
145
|
+
if trigger not in triggers:
|
|
146
|
+
triggers.append(trigger)
|
|
147
|
+
if context.catalog_changed:
|
|
148
|
+
triggers.append("catalog_changed")
|
|
149
|
+
if context.related_notes_export_changed:
|
|
150
|
+
triggers.append("related_notes_export_changed")
|
|
151
|
+
return triggers
|
|
152
|
+
|
|
153
|
+
|
|
154
|
+
def is_image_only_context(payload: object | None) -> bool:
|
|
155
|
+
context = _trigger_context_or_none(payload)
|
|
156
|
+
return False if context is None else context.image_only()
|
|
157
|
+
|
|
158
|
+
|
|
159
|
+
def affected_notes_from_context(payload: object | None) -> list[JsonObject]:
|
|
160
|
+
context = _trigger_context_or_none(payload)
|
|
161
|
+
if context is None:
|
|
162
|
+
return []
|
|
163
|
+
affected: list[JsonObject] = []
|
|
164
|
+
for note in context.changed_notes:
|
|
165
|
+
path = note.affected_path()
|
|
166
|
+
entry: JsonObject = {
|
|
167
|
+
"reason": note.change_type,
|
|
168
|
+
}
|
|
169
|
+
if path:
|
|
170
|
+
entry["path"] = path
|
|
171
|
+
affected.append(JsonObjectAdapter.validate_python(entry))
|
|
172
|
+
return affected
|
|
173
|
+
|
|
174
|
+
|
|
175
|
+
def structural_events_from_context(payload: object | None) -> list[JsonObject]:
|
|
176
|
+
context = _trigger_context_or_none(payload)
|
|
177
|
+
if context is None:
|
|
178
|
+
return []
|
|
179
|
+
events: list[JsonObject] = []
|
|
180
|
+
for note in context.changed_notes:
|
|
181
|
+
if note.change_type in {"deleted", "renamed", "moved", "merged"}:
|
|
182
|
+
events.append(note.clean_payload())
|
|
183
|
+
return events
|