mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/link_git.py +110 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/link_runtime_artifact.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/note_plan.py +75 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/public_report.py +53 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/raw_coverage.py +217 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_headless.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_runtime.py +395 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/schema_registry.py +637 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/specialist.py +432 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/status.py +62 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/style_rewrite.py +568 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/vocabulary_ingestion.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_blockers.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_guardrails.py +637 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_outcomes.py +121 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_receipts.py +100 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__main__.py +4 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/cli.py +275 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/candidates.py +193 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/cli.py +189 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/gemini.py +220 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/inputs.py +120 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/models.py +34 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/parsing.py +48 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/prompts.py +216 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/quality.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/reporting.py +24 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/runner.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/utils.py +39 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/vault_guard_bridge.py +17 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_context_packets.py +454 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_decision_projection.py +133 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_effects.py +1260 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_fsm.py +2768 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_machine.py +1588 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_plan.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_primary_objective.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_problem.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_receipt_evidence.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_states.py +290 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_user_report.py +342 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/health.py +6332 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_fsm.py +1119 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_git.py +638 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_machine.py +1106 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_retry_governance.py +374 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_runtime_result.py +485 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_triggers.py +183 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/linking.py +2758 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/reference_repair.py +718 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/related_notes_fsm.py +1855 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/link_related_machine.py +834 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_fsm.py +1592 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_machine.py +3097 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_primary_objective.py +28 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_runtime_result.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/performance.py +97 -0
- package/.opencode/mednotes/src/mednotes/kernel/__init__.py +6 -0
- package/.opencode/mednotes/src/mednotes/kernel/agent_directive.py +336 -0
- package/.opencode/mednotes/src/mednotes/kernel/base.py +51 -0
- package/.opencode/mednotes/src/mednotes/kernel/blockers.py +39 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_executor.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_intent.py +69 -0
- package/.opencode/mednotes/src/mednotes/kernel/effects.py +160 -0
- package/.opencode/mednotes/src/mednotes/kernel/errors.py +38 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_event.py +35 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_model.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_transition_result.py +75 -0
- package/.opencode/mednotes/src/mednotes/kernel/guardrails.py +188 -0
- package/.opencode/mednotes/src/mednotes/kernel/progress.py +319 -0
- package/.opencode/mednotes/src/mednotes/kernel/public_report.py +346 -0
- package/.opencode/mednotes/src/mednotes/kernel/state_machine.py +164 -0
- package/.opencode/mednotes/src/mednotes/kernel/workflow.py +619 -0
- package/.opencode/mednotes/src/mednotes/platform/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/platform/backup_policy.py +382 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/__init__.py +62 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/contracts.py +83 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/core.py +4168 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/integrity.py +989 -0
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- package/.opencode/plugins/mednotes_hook/anki_preflight.mjs +214 -0
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- package/.opencode/plugins/mednotes_hook/telemetry_capture.mjs +511 -0
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- package/AGENTS.md +57 -0
- package/README.md +194 -0
- package/adapters/antigravity/agents.json +80 -0
- package/adapters/antigravity/templates/med-chat-triager.md +214 -0
- package/adapters/antigravity/templates/med-flashcard-maker.md +72 -0
- package/adapters/antigravity/templates/med-knowledge-architect.md +241 -0
- package/adapters/antigravity/templates/med-link-graph-curator.md +187 -0
- package/adapters/antigravity/templates/med-publish-guard.md +71 -0
- package/adapters/gemini-cli/gemini-extension.json +14 -0
- package/adapters/gemini-cli/package.json +15 -0
- package/adapters/gemini-cli/pyproject.toml +48 -0
- package/bin/mednotes-opencode.mjs +155 -0
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- package/core/agents/med-knowledge-architect.md +224 -0
- package/core/agents/med-link-graph-curator.md +171 -0
- package/core/agents/med-publish-guard.md +55 -0
- package/core/commands/flashcards.toml +22 -0
- package/core/commands/mednotes/create.toml +22 -0
- package/core/commands/mednotes/enrich.toml +24 -0
- package/core/commands/mednotes/fix-wiki.toml +24 -0
- package/core/commands/mednotes/history.toml +19 -0
- package/core/commands/mednotes/link-body.toml +22 -0
- package/core/commands/mednotes/link-related.toml +24 -0
- package/core/commands/mednotes/link.toml +24 -0
- package/core/commands/mednotes/pdf-library.toml +24 -0
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- package/core/commands/mednotes/setup.toml +18 -0
- package/core/commands/mednotes/status.toml +24 -0
- package/core/commands/mednotes/telemetry.toml +24 -0
- package/core/commands/report.toml +23 -0
- package/core/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/core/skills/create-medical-flashcards/SKILL.md +113 -0
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- package/core/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
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- package/core/skills/process-medical-chats/SKILL.md +246 -0
- package/core/skills/workflow-report/SKILL.md +100 -0
- package/package.json +45 -0
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// Pure hook-domain contract logic. This module validates and renders FSM
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// directives, but receives runtime-specific redaction context from adapters.
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export const DIRECTIVE_SCHEMA = "medical-notes-workbench.agent-directive.v1";
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export const WORKFLOW_RUN_RECORD_SCHEMA = "medical-notes-workbench.workflow-run-record.v1";
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export const KNOWN_FSM_SCHEMAS = new Set([
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"medical-notes-workbench.fix-wiki-fsm-result.v1",
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"medical-notes-workbench.flashcards-fsm-result.v1",
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"medical-notes-workbench.link-fsm-result.v1",
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"medical-notes-workbench.link-related-fsm-result.v1",
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"medical-notes-workbench.process-chats-fsm-result.v1",
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"medical-notes-workbench.setup-fsm-result.v1",
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"medical-notes-workbench.history-fsm-result.v1",
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]);
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const KNOWN_DIRECTIVE_CARRIER_SCHEMAS = new Set([
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...KNOWN_FSM_SCHEMAS,
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"medical-notes-workbench.fix-wiki-agent-stdout-report.v1",
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"medical-notes-workbench.plan-output-receipt.v1",
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"medical-notes-workbench.specialist-task-runner-result.v1",
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"medical-notes-workbench.style-rewrite-atomic-apply-agent-stdout.v1",
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const MAX_CONTEXT_CHARS = 1800;
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export function isOfficialWorkflowPayload(value) {
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if (!value || typeof value !== "object" || Array.isArray(value)) return false;
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// Run records are local observability snapshots. They may contain a copied
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// directive for audit, but they are not the live FSM payload for enforcement.
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if (String(value.schema || "") === WORKFLOW_RUN_RECORD_SCHEMA) return false;
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if (!KNOWN_FSM_SCHEMAS.has(String(value.schema || ""))) return false;
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return isAgentDirective(value.agent_directive);
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}
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export function isAgentDirectiveCarrierPayload(value) {
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if (!value || typeof value !== "object" || Array.isArray(value)) return false;
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// Carriers may be official CLI stdout/receipt contracts, but run records stay
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// observability-only snapshots and must not inject live hook state.
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if (String(value.schema || "") === WORKFLOW_RUN_RECORD_SCHEMA) return false;
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if (!KNOWN_DIRECTIVE_CARRIER_SCHEMAS.has(String(value.schema || ""))) return false;
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return isAgentDirective(value.agent_directive);
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export function isAgentDirective(value) {
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if (!value || typeof value !== "object" || Array.isArray(value)) return false;
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const control = value.control;
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const capabilities = control && typeof control === "object" ? control.capabilities : null;
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if (
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!(
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value.schema === DIRECTIVE_SCHEMA &&
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typeof value.workflow === "string" &&
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typeof value.run_id === "string" &&
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control &&
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typeof control === "object" &&
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typeof control.state === "string" &&
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capabilities &&
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typeof capabilities === "object" &&
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return false;
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}
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return directiveStatusShapeIsValid(control, capabilities);
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}
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export function contextFromDirective(directive) {
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const control = directive.control || {};
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const capabilities = control.capabilities || {};
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const effects = Array.isArray(control.effects)
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.map((effect) => String(effect?.kind || ""))
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: "";
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const limits = control.limits && typeof control.limits === "object" ? control.limits : {};
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const lines = [
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"MEDNOTES FSM CONTEXT",
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`workflow: ${safeLine(directive.workflow)}`,
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`status: ${safeLine(control.status)}`,
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`state: ${safeLine(control.state)}`,
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`capabilities: continue=${String(Boolean(capabilities.continue))}; final_report=${String(Boolean(capabilities.final_report))}`,
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];
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if (effects) lines.push(`effects: ${safeLine(effects)}`);
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lines.push(
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`limits: raw_content=${String(limits.raw_content !== false)}; absolute_paths=${String(limits.absolute_paths !== false)}; ad_hoc_scripts=${String(limits.ad_hoc_scripts !== false)}`,
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);
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const resume = safeLine(control.resume || "");
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if (resume) lines.push(`resume: ${resume}`);
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for (const instruction of Array.isArray(directive.instructions) ? directive.instructions.slice(0, 12) : []) {
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const line = safeLine(instruction);
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if (line) lines.push(`instruction: ${line}`);
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}
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const context = lines.join("\n");
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return context.length <= MAX_CONTEXT_CHARS ? context : `${context.slice(0, MAX_CONTEXT_CHARS - 3).trimEnd()}...`;
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}
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export function contextFromWorkflowIntent(intent) {
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const workflow = safeLine(intent?.workflow || "");
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if (!workflow) return "";
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const lines = [
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"MEDNOTES WORKFLOW INTENT",
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`workflow: ${workflow}`,
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"stage: before_workflow_payload",
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"instruction: load only the official packaged workflow skill if needed.",
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"instruction: follow the official public workflow route, then wait for official JSON.",
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"instruction: do not probe permissions, list directories, call MCP, invoke subagents, schedule timers or self-debug before the workflow payload.",
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"instruction: if a tool schema fails, retry the same necessary tool without invented metadata arguments.",
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];
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const context = lines.join("\n");
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return context.length <= MAX_CONTEXT_CHARS ? context : `${context.slice(0, MAX_CONTEXT_CHARS - 3).trimEnd()}...`;
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}
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export function controlStatus(directive) {
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return String(directive?.control?.status || "");
|
|
116
|
+
}
|
|
117
|
+
|
|
118
|
+
export function directiveAllowsFinalReport(directive) {
|
|
119
|
+
return isAgentDirective(directive) && Boolean(directive?.control?.capabilities?.final_report);
|
|
120
|
+
}
|
|
121
|
+
|
|
122
|
+
export function directiveAllowsPauseReport(directive) {
|
|
123
|
+
const capabilities = directive?.control?.capabilities;
|
|
124
|
+
if (capabilities?.continue !== false) return false;
|
|
125
|
+
const status = controlStatus(directive);
|
|
126
|
+
return status === "waiting_external" || status === "waiting_human" || status === "blocked" || status === "failed";
|
|
127
|
+
}
|
|
128
|
+
|
|
129
|
+
export function limitIsFalse(directive, name) {
|
|
130
|
+
return directive?.control?.limits?.[name] === false;
|
|
131
|
+
}
|
|
132
|
+
|
|
133
|
+
function safeLine(value) {
|
|
134
|
+
return String(value || "")
|
|
135
|
+
.replace(/\s+/g, " ")
|
|
136
|
+
.replace(/\/(?:private\/)?(?:var|tmp|Users|home)\/[^\s]+/g, "[path]")
|
|
137
|
+
.slice(0, 240)
|
|
138
|
+
.trim();
|
|
139
|
+
}
|
|
140
|
+
|
|
141
|
+
function directiveStatusShapeIsValid(control, capabilities) {
|
|
142
|
+
const status = String(control.status || "");
|
|
143
|
+
const effects = Array.isArray(control.effects) ? control.effects : [];
|
|
144
|
+
const blockers = Array.isArray(control.blockers)
|
|
145
|
+
? control.blockers.map((item) => String(item || "").trim()).filter(Boolean)
|
|
146
|
+
: [];
|
|
147
|
+
const resume = String(control.resume || "").trim();
|
|
148
|
+
if (status === "waiting_agent") {
|
|
149
|
+
if (capabilities.continue !== true) return false;
|
|
150
|
+
if (capabilities.final_report !== false) return false;
|
|
151
|
+
if (!effects.length) return false;
|
|
152
|
+
}
|
|
153
|
+
if (status === "completed" || status === "completed_with_warnings") {
|
|
154
|
+
if (capabilities.final_report !== true) return false;
|
|
155
|
+
}
|
|
156
|
+
if (["waiting_human", "waiting_external", "blocked", "failed"].includes(status)) {
|
|
157
|
+
if (!blockers.length && !resume) return false;
|
|
158
|
+
}
|
|
159
|
+
return true;
|
|
160
|
+
}
|