mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/public_report.py +53 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_runtime.py +395 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/schema_registry.py +637 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__main__.py +4 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/cli.py +275 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_decision_projection.py +133 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_fsm.py +2768 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_machine.py +1588 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_plan.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_primary_objective.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_problem.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_receipt_evidence.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_states.py +290 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_user_report.py +342 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/health.py +6332 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_fsm.py +1119 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_git.py +638 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_machine.py +1106 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_retry_governance.py +374 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_runtime_result.py +485 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_triggers.py +183 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/linking.py +2758 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/reference_repair.py +718 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/related_notes_fsm.py +1855 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/link_related_machine.py +834 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_fsm.py +1592 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_machine.py +3097 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_primary_objective.py +28 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_runtime_result.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/performance.py +97 -0
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- package/.opencode/mednotes/src/mednotes/kernel/effects.py +160 -0
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- package/.opencode/mednotes/src/mednotes/kernel/fsm_transition_result.py +75 -0
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- package/.opencode/mednotes/src/mednotes/kernel/progress.py +319 -0
- package/.opencode/mednotes/src/mednotes/kernel/public_report.py +346 -0
- package/.opencode/mednotes/src/mednotes/kernel/state_machine.py +164 -0
- package/.opencode/mednotes/src/mednotes/kernel/workflow.py +619 -0
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- package/.opencode/mednotes/src/mednotes/platform/feedback/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/contracts.py +83 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/core.py +4168 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/integrity.py +989 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/operational_contract.py +2293 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry.py +875 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry_config.py +65 -0
- package/.opencode/mednotes/src/mednotes/platform/opencode_runtime_config.py +182 -0
- package/.opencode/mednotes/src/mednotes/platform/paths/__init__.py +1560 -0
- package/.opencode/mednotes/src/mednotes/platform/secrets.py +89 -0
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- package/.opencode/mednotes/uv.lock +932 -0
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- package/.opencode/opencode.json +31 -0
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- package/.opencode/plugins/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/plugins/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/plugins/mednotes_hook/anki_preflight.mjs +214 -0
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- package/adapters/antigravity/templates/med-chat-triager.md +214 -0
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- package/adapters/gemini-cli/package.json +15 -0
- package/adapters/gemini-cli/pyproject.toml +48 -0
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- package/core/agents/med-publish-guard.md +55 -0
- package/core/commands/flashcards.toml +22 -0
- package/core/commands/mednotes/create.toml +22 -0
- package/core/commands/mednotes/enrich.toml +24 -0
- package/core/commands/mednotes/fix-wiki.toml +24 -0
- package/core/commands/mednotes/history.toml +19 -0
- package/core/commands/mednotes/link-body.toml +22 -0
- package/core/commands/mednotes/link-related.toml +24 -0
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- package/core/commands/mednotes/pdf-library.toml +24 -0
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- package/core/skills/create-medical-flashcards/SKILL.md +113 -0
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- package/package.json +45 -0
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import crypto from "node:crypto";
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import fs from "node:fs/promises";
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import { isOfficialWorkflowPayload } from "./domain/agent_directive_core.mjs";
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import { recordHookError } from "./hook_errors.mjs";
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import { clampInt, quiet } from "./runtime.mjs";
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const SCHEMA = "medical-notes-workbench.agent-hook-event.v1";
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const SCRIPT_EXTENSIONS = new Set([".py", ".js", ".mjs", ".cjs", ".sh", ".ps1", ".cmd"]);
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const WRITE_TOOL_NAMES = new Set(["write_file", "write"]);
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const REPLACE_TOOL_NAMES = new Set(["replace", "edit", "multiedit"]);
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const SHELL_TOOL_NAMES = new Set([
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"run_shell_command",
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const MAX_SCRIPT_BYTES = clampInt(process.env.MEDNOTES_HOOK_MAX_SCRIPT_BYTES, 48 * 1024, 1024, 256 * 1024);
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const MAX_CONSOLE_CHARS = clampInt(process.env.MEDNOTES_HOOK_MAX_CONSOLE_CHARS, 16 * 1024, 1024, 128 * 1024);
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export async function captureAfterTool(payload) {
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try {
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if (/^(1|true|yes)$/i.test(process.env.MEDNOTES_HOOK_DEBUG || "")) {
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}
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return quiet();
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export async function buildHookEvent(payload) {
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const toolName = String(payload.tool_name || payload.toolName || payload.name || payload.tool || "");
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const toolInput = firstObject(payload.tool_input, payload.toolInput, payload.input, payload.parameters, payload.args);
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schema: SCHEMA,
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event_id: crypto.randomUUID ? crypto.randomUUID() : crypto.randomBytes(16).toString("hex"),
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recorded_at: new Date().toISOString(),
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hook_event_name: String(payload.hook_event_name || "AfterTool"),
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session_id: String(payload.session_id || ""),
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transcript_path: compactPath(String(payload.transcript_path || "")),
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tool_name: toolName,
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original_request_name: String(payload.original_request_name || ""),
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};
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enrichEventFromCommandEvent(event, commandEvent);
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function capturedToolKind(toolName) {
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async function scriptFromWriteFile(toolInput, cwd) {
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const filePath = firstString(
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toolInput.file_path,
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toolInput.filePath,
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toolInput.path,
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toolInput.target_file,
|
|
128
|
+
toolInput.targetFile,
|
|
129
|
+
);
|
|
130
|
+
if (!isScriptPath(filePath)) return null;
|
|
131
|
+
const content = firstString(
|
|
132
|
+
toolInput.content,
|
|
133
|
+
toolInput.file_text,
|
|
134
|
+
toolInput.fileText,
|
|
135
|
+
toolInput.text,
|
|
136
|
+
toolInput.source,
|
|
137
|
+
);
|
|
138
|
+
return scriptRecord({
|
|
139
|
+
pathValue: resolveToolPath(filePath, cwd),
|
|
140
|
+
content,
|
|
141
|
+
captureMethod: "write_file",
|
|
142
|
+
});
|
|
143
|
+
}
|
|
144
|
+
|
|
145
|
+
async function scriptFromReplace(toolInput, cwd) {
|
|
146
|
+
const filePath = firstString(
|
|
147
|
+
toolInput.file_path,
|
|
148
|
+
toolInput.filePath,
|
|
149
|
+
toolInput.path,
|
|
150
|
+
toolInput.target_file,
|
|
151
|
+
toolInput.targetFile,
|
|
152
|
+
);
|
|
153
|
+
if (!isScriptPath(filePath)) return null;
|
|
154
|
+
const resolved = resolveToolPath(filePath, cwd);
|
|
155
|
+
const fromDisk = await readScriptContent(resolved);
|
|
156
|
+
return scriptRecord({
|
|
157
|
+
pathValue: resolved,
|
|
158
|
+
content:
|
|
159
|
+
fromDisk.content ||
|
|
160
|
+
firstString(
|
|
161
|
+
toolInput.new_string,
|
|
162
|
+
toolInput.newString,
|
|
163
|
+
toolInput.replacement,
|
|
164
|
+
toolInput.new_text,
|
|
165
|
+
lastEditReplacement(toolInput.edits),
|
|
166
|
+
),
|
|
167
|
+
omittedReason: fromDisk.omittedReason,
|
|
168
|
+
captureMethod: "replace",
|
|
169
|
+
});
|
|
170
|
+
}
|
|
171
|
+
|
|
172
|
+
function lastEditReplacement(edits) {
|
|
173
|
+
if (!Array.isArray(edits) || edits.length === 0) return "";
|
|
174
|
+
const last = edits[edits.length - 1];
|
|
175
|
+
if (!last || typeof last !== "object") return "";
|
|
176
|
+
return firstString(last.new_string, last.newString, last.replacement, last.new_text);
|
|
177
|
+
}
|
|
178
|
+
|
|
179
|
+
async function scriptsFromShellCommand(toolInput, cwd) {
|
|
180
|
+
const command = shellCommand(toolInput);
|
|
181
|
+
const dirPath = firstString(
|
|
182
|
+
toolInput.dir_path,
|
|
183
|
+
toolInput.dirPath,
|
|
184
|
+
toolInput.working_directory,
|
|
185
|
+
toolInput.workingDirectory,
|
|
186
|
+
);
|
|
187
|
+
const effectiveCwd = dirPath ? resolveToolPath(dirPath, cwd) : cwd;
|
|
188
|
+
const paths = scriptPathsFromCommand(command).map((item) => resolveToolPath(item, effectiveCwd));
|
|
189
|
+
const records = [];
|
|
190
|
+
for (const candidate of [...new Set(paths)].slice(0, 6)) {
|
|
191
|
+
const content = await readScriptContent(candidate);
|
|
192
|
+
if (!content.content && !content.omittedReason) continue;
|
|
193
|
+
records.push(
|
|
194
|
+
scriptRecord({
|
|
195
|
+
pathValue: candidate,
|
|
196
|
+
content: content.content,
|
|
197
|
+
omittedReason: content.omittedReason,
|
|
198
|
+
captureMethod: "run_shell_command",
|
|
199
|
+
}),
|
|
200
|
+
);
|
|
201
|
+
}
|
|
202
|
+
return records.filter(Boolean);
|
|
203
|
+
}
|
|
204
|
+
|
|
205
|
+
function commandEventFromShell(toolInput, toolResponse) {
|
|
206
|
+
const command = shellCommand(toolInput);
|
|
207
|
+
if (!command) return null;
|
|
208
|
+
const output = responseText(toolResponse);
|
|
209
|
+
const exitCode = exitCodeFromResponse(toolResponse, output);
|
|
210
|
+
const workflowPayload = workflowPayloadFromOutput(output);
|
|
211
|
+
const workflow = workflowFromPayload(workflowPayload);
|
|
212
|
+
const workflowFields = workflowFieldsFromPayload(workflowPayload);
|
|
213
|
+
const workflowStatus = workflowFields.status;
|
|
214
|
+
const workflowPhase = workflowFields.phase;
|
|
215
|
+
const workflowBlockedReason = workflowFields.blocked_reason;
|
|
216
|
+
const workflowExitCode = Number.isInteger(workflowFields.workflow_exit_code)
|
|
217
|
+
? workflowFields.workflow_exit_code
|
|
218
|
+
: exitCode;
|
|
219
|
+
const hasError =
|
|
220
|
+
Boolean(toolResponse.error) ||
|
|
221
|
+
truthy(toolResponse.is_error) ||
|
|
222
|
+
truthy(toolResponse.isError) ||
|
|
223
|
+
Boolean(firstString(toolResponse.stderr, toolResponse?.data?.stderr)) ||
|
|
224
|
+
["error", "failed", "failure"].includes(String(toolResponse.status || "").toLowerCase()) ||
|
|
225
|
+
(Number.isInteger(exitCode) && exitCode !== 0);
|
|
226
|
+
if (!hasError && !output.trim()) return null;
|
|
227
|
+
const event = {
|
|
228
|
+
command_family: commandFamily(command),
|
|
229
|
+
command: redactOperationalText(command, 2000),
|
|
230
|
+
exit_code: Number.isInteger(exitCode) ? exitCode : null,
|
|
231
|
+
status: hasError ? "failed" : "completed",
|
|
232
|
+
output_tail: tail(redactOperationalText(tail(output, MAX_CONSOLE_CHARS * 2), MAX_CONSOLE_CHARS), MAX_CONSOLE_CHARS),
|
|
233
|
+
error: errorTextFromResponse(toolResponse),
|
|
234
|
+
capture_method: "run_shell_command",
|
|
235
|
+
};
|
|
236
|
+
if (workflow) event.workflow = workflow;
|
|
237
|
+
if (workflowPhase) event.phase = workflowPhase;
|
|
238
|
+
if (workflowStatus) event.workflow_status = workflowStatus;
|
|
239
|
+
if (workflowBlockedReason) event.blocked_reason = workflowBlockedReason;
|
|
240
|
+
if (Number.isInteger(workflowExitCode)) event.workflow_exit_code = workflowExitCode;
|
|
241
|
+
return event;
|
|
242
|
+
}
|
|
243
|
+
|
|
244
|
+
function enrichEventFromCommandEvent(event, commandEvent) {
|
|
245
|
+
if (!event || !commandEvent) return;
|
|
246
|
+
if (commandEvent.workflow) event.workflow = commandEvent.workflow;
|
|
247
|
+
if (commandEvent.phase) event.phase = commandEvent.phase;
|
|
248
|
+
if (commandEvent.workflow_status) event.status = commandEvent.workflow_status;
|
|
249
|
+
if (commandEvent.blocked_reason) event.blocked_reason = commandEvent.blocked_reason;
|
|
250
|
+
if (Number.isInteger(commandEvent.workflow_exit_code)) event.workflow_exit_code = commandEvent.workflow_exit_code;
|
|
251
|
+
}
|
|
252
|
+
|
|
253
|
+
function workflowPayloadFromOutput(output) {
|
|
254
|
+
const text = String(output || "");
|
|
255
|
+
if (!text.includes("{")) return {};
|
|
256
|
+
const probes = [text.slice(0, MAX_CONSOLE_CHARS * 4), tail(text, MAX_CONSOLE_CHARS * 4)];
|
|
257
|
+
for (const probe of probes) {
|
|
258
|
+
const parsed = firstJsonObject(probe);
|
|
259
|
+
if (isOfficialWorkflowPayload(parsed)) {
|
|
260
|
+
return parsed;
|
|
261
|
+
}
|
|
262
|
+
}
|
|
263
|
+
return {};
|
|
264
|
+
}
|
|
265
|
+
|
|
266
|
+
function workflowFromPayload(value) {
|
|
267
|
+
if (!isOfficialWorkflowPayload(value)) return "";
|
|
268
|
+
return firstString(value.agent_directive?.workflow);
|
|
269
|
+
}
|
|
270
|
+
|
|
271
|
+
function workflowFieldsFromPayload(value) {
|
|
272
|
+
if (!isOfficialWorkflowPayload(value)) return {};
|
|
273
|
+
const progress = firstObject(value.progress_view_model);
|
|
274
|
+
const snapshot = firstObject(value.state_machine_snapshot);
|
|
275
|
+
const directive = firstObject(value.agent_directive);
|
|
276
|
+
const control = firstObject(directive.control);
|
|
277
|
+
const blockers = Array.isArray(control.blockers) ? control.blockers : [];
|
|
278
|
+
const directiveStatus = firstString(control.status);
|
|
279
|
+
return {
|
|
280
|
+
status: directiveStatus,
|
|
281
|
+
phase: firstString(progress.phase, control.phase),
|
|
282
|
+
blocked_reason: firstString(blockers[0], control.reason),
|
|
283
|
+
state: firstString(control.state, progress.state, snapshot.current_state),
|
|
284
|
+
workflow_exit_code: null,
|
|
285
|
+
};
|
|
286
|
+
}
|
|
287
|
+
|
|
288
|
+
function firstJsonObject(text) {
|
|
289
|
+
const input = String(text || "");
|
|
290
|
+
for (let start = input.indexOf("{"); start !== -1; start = input.indexOf("{", start + 1)) {
|
|
291
|
+
let depth = 0;
|
|
292
|
+
let inString = false;
|
|
293
|
+
let escaped = false;
|
|
294
|
+
for (let index = start; index < input.length; index += 1) {
|
|
295
|
+
const char = input[index];
|
|
296
|
+
if (escaped) {
|
|
297
|
+
escaped = false;
|
|
298
|
+
continue;
|
|
299
|
+
}
|
|
300
|
+
if (char === "\\") {
|
|
301
|
+
escaped = inString;
|
|
302
|
+
continue;
|
|
303
|
+
}
|
|
304
|
+
if (char === '"') {
|
|
305
|
+
inString = !inString;
|
|
306
|
+
continue;
|
|
307
|
+
}
|
|
308
|
+
if (inString) continue;
|
|
309
|
+
if (char === "{") depth += 1;
|
|
310
|
+
if (char === "}") depth -= 1;
|
|
311
|
+
if (depth === 0) {
|
|
312
|
+
try {
|
|
313
|
+
return JSON.parse(input.slice(start, index + 1));
|
|
314
|
+
} catch {
|
|
315
|
+
break;
|
|
316
|
+
}
|
|
317
|
+
}
|
|
318
|
+
}
|
|
319
|
+
}
|
|
320
|
+
return {};
|
|
321
|
+
}
|
|
322
|
+
|
|
323
|
+
function shellCommand(toolInput) {
|
|
324
|
+
return firstString(toolInput.command, toolInput.cmd, toolInput.script);
|
|
325
|
+
}
|
|
326
|
+
|
|
327
|
+
function responseText(toolResponse) {
|
|
328
|
+
return [
|
|
329
|
+
toolResponse.llmContent,
|
|
330
|
+
toolResponse.returnDisplay,
|
|
331
|
+
toolResponse.stdout,
|
|
332
|
+
toolResponse.stderr,
|
|
333
|
+
toolResponse.output,
|
|
334
|
+
toolResponse.text,
|
|
335
|
+
toolResponse.message,
|
|
336
|
+
toolResponse.content,
|
|
337
|
+
toolResponse?.data?.stdout,
|
|
338
|
+
toolResponse?.data?.stderr,
|
|
339
|
+
toolResponse?.data?.output,
|
|
340
|
+
]
|
|
341
|
+
.map(textFromValue)
|
|
342
|
+
.filter((item) => item.trim())
|
|
343
|
+
.join("\n\n");
|
|
344
|
+
}
|
|
345
|
+
|
|
346
|
+
function exitCodeFromResponse(toolResponse, output) {
|
|
347
|
+
if (Number.isInteger(toolResponse?.data?.exitCode)) return toolResponse.data.exitCode;
|
|
348
|
+
if (Number.isInteger(toolResponse?.data?.exit_code)) return toolResponse.data.exit_code;
|
|
349
|
+
if (Number.isInteger(toolResponse.exitCode)) return toolResponse.exitCode;
|
|
350
|
+
if (Number.isInteger(toolResponse.exit_code)) return toolResponse.exit_code;
|
|
351
|
+
if (Number.isInteger(toolResponse.code)) return toolResponse.code;
|
|
352
|
+
const match = String(output || "").match(/Exit Code:\s*(-?\d+)/i);
|
|
353
|
+
return match ? Number(match[1]) : null;
|
|
354
|
+
}
|
|
355
|
+
|
|
356
|
+
function errorTextFromResponse(toolResponse) {
|
|
357
|
+
if (!toolResponse.error) return "";
|
|
358
|
+
if (typeof toolResponse.error === "string") return redactOperationalText(toolResponse.error, 4000);
|
|
359
|
+
try {
|
|
360
|
+
return redactOperationalText(JSON.stringify(toolResponse.error), 4000);
|
|
361
|
+
} catch {
|
|
362
|
+
return redactOperationalText(String(toolResponse.error), 4000);
|
|
363
|
+
}
|
|
364
|
+
}
|
|
365
|
+
|
|
366
|
+
function textFromValue(value) {
|
|
367
|
+
if (typeof value === "string") return value;
|
|
368
|
+
if (Array.isArray(value)) return value.map(textFromValue).filter(Boolean).join("\n");
|
|
369
|
+
if (!value || typeof value !== "object") return "";
|
|
370
|
+
if (typeof value.text === "string") return value.text;
|
|
371
|
+
if (typeof value.content === "string") return value.content;
|
|
372
|
+
return "";
|
|
373
|
+
}
|
|
374
|
+
|
|
375
|
+
function truthy(value) {
|
|
376
|
+
return value === true || /^(1|true|yes)$/i.test(String(value || ""));
|
|
377
|
+
}
|
|
378
|
+
|
|
379
|
+
export function scriptPathsFromCommand(command) {
|
|
380
|
+
const results = [];
|
|
381
|
+
const patterns = [
|
|
382
|
+
/>\s*(?:"([^"]+\.(?:py|js|mjs|cjs|sh|ps1|cmd))"|'([^']+\.(?:py|js|mjs|cjs|sh|ps1|cmd))'|([^\s<>|;&]+\.(?:py|js|mjs|cjs|sh|ps1|cmd)))/gi,
|
|
383
|
+
/\b(?:tee|cat)\b[^|;&]*?>\s*(?:"([^"]+\.(?:py|js|mjs|cjs|sh|ps1|cmd))"|'([^']+\.(?:py|js|mjs|cjs|sh|ps1|cmd))'|([^\s<>|;&]+\.(?:py|js|mjs|cjs|sh|ps1|cmd)))/gi,
|
|
384
|
+
/\bSet-Content\b[^|;&]*?(?:-(?:LiteralPath|Path)\s+)?(?:"([^"]+\.(?:py|js|mjs|cjs|sh|ps1|cmd))"|'([^']+\.(?:py|js|mjs|cjs|sh|ps1|cmd))'|([^\s|;&]+\.(?:py|js|mjs|cjs|sh|ps1|cmd)))/gi,
|
|
385
|
+
/\bOut-File\b[^|;&]*?(?:-(?:LiteralPath|FilePath)\s+)?(?:"([^"]+\.(?:py|js|mjs|cjs|sh|ps1|cmd))"|'([^']+\.(?:py|js|mjs|cjs|sh|ps1|cmd))'|([^\s|;&]+\.(?:py|js|mjs|cjs|sh|ps1|cmd)))/gi,
|
|
386
|
+
];
|
|
387
|
+
for (const pattern of patterns) {
|
|
388
|
+
for (const match of command.matchAll(pattern)) {
|
|
389
|
+
const candidate = match.slice(1).find(Boolean);
|
|
390
|
+
if (candidate && isScriptPath(candidate)) results.push(candidate);
|
|
391
|
+
}
|
|
392
|
+
}
|
|
393
|
+
return results;
|
|
394
|
+
}
|
|
395
|
+
|
|
396
|
+
async function readScriptContent(pathValue) {
|
|
397
|
+
if (!isScriptPath(pathValue) || (isWindowsAbsolute(pathValue) && process.platform !== "win32")) {
|
|
398
|
+
return { content: "", omittedReason: "" };
|
|
399
|
+
}
|
|
400
|
+
try {
|
|
401
|
+
const stat = await fs.stat(pathValue);
|
|
402
|
+
if (!stat.isFile()) return { content: "", omittedReason: "" };
|
|
403
|
+
if (stat.size > MAX_SCRIPT_BYTES) {
|
|
404
|
+
return { content: "", omittedReason: `script_too_large:${stat.size}` };
|
|
405
|
+
}
|
|
406
|
+
return { content: await fs.readFile(pathValue, "utf8"), omittedReason: "" };
|
|
407
|
+
} catch {
|
|
408
|
+
return { content: "", omittedReason: "" };
|
|
409
|
+
}
|
|
410
|
+
}
|
|
411
|
+
|
|
412
|
+
function scriptRecord({ pathValue, content, omittedReason = "", captureMethod }) {
|
|
413
|
+
if (!isScriptPath(pathValue)) return null;
|
|
414
|
+
const value = String(content || "");
|
|
415
|
+
return {
|
|
416
|
+
path: compactPath(pathValue),
|
|
417
|
+
language: languageForPath(pathValue),
|
|
418
|
+
sha256: value ? crypto.createHash("sha256").update(value).digest("hex") : "",
|
|
419
|
+
size_bytes: Buffer.byteLength(value, "utf8"),
|
|
420
|
+
content: value ? redactOperationalText(value, MAX_SCRIPT_BYTES) : "",
|
|
421
|
+
content_omitted_reason: omittedReason,
|
|
422
|
+
source: "hook",
|
|
423
|
+
capture_method: captureMethod,
|
|
424
|
+
};
|
|
425
|
+
}
|
|
426
|
+
|
|
427
|
+
function commandFamily(command) {
|
|
428
|
+
const first =
|
|
429
|
+
String(command || "")
|
|
430
|
+
.trim()
|
|
431
|
+
.split(/\s+/)[0] || "shell";
|
|
432
|
+
return first.replace(/[^a-zA-Z0-9_.-]/g, "_").toLowerCase();
|
|
433
|
+
}
|
|
434
|
+
|
|
435
|
+
function isScriptPath(value) {
|
|
436
|
+
const cleaned = String(value || "").replace(/^["']|["']$/g, "");
|
|
437
|
+
return SCRIPT_EXTENSIONS.has(path.extname(cleaned).toLowerCase());
|
|
438
|
+
}
|
|
439
|
+
|
|
440
|
+
function languageForPath(value) {
|
|
441
|
+
return (
|
|
442
|
+
{
|
|
443
|
+
".py": "python",
|
|
444
|
+
".js": "javascript",
|
|
445
|
+
".mjs": "javascript",
|
|
446
|
+
".cjs": "javascript",
|
|
447
|
+
".sh": "shell",
|
|
448
|
+
".ps1": "powershell",
|
|
449
|
+
".cmd": "batch",
|
|
450
|
+
}[path.extname(String(value || "")).toLowerCase()] || "text"
|
|
451
|
+
);
|
|
452
|
+
}
|
|
453
|
+
|
|
454
|
+
function resolveToolPath(value, cwd) {
|
|
455
|
+
const cleaned = String(value || "").replace(/^["']|["']$/g, "");
|
|
456
|
+
if (!cleaned) return "";
|
|
457
|
+
if (path.isAbsolute(cleaned) || isWindowsAbsolute(cleaned)) return cleaned;
|
|
458
|
+
return path.resolve(cwd || process.cwd(), cleaned);
|
|
459
|
+
}
|
|
460
|
+
|
|
461
|
+
function isWindowsAbsolute(value) {
|
|
462
|
+
return /^[a-zA-Z]:[\\/]/.test(String(value || ""));
|
|
463
|
+
}
|
|
464
|
+
|
|
465
|
+
function feedbackRoot() {
|
|
466
|
+
const configured = process.env.MEDNOTES_FEEDBACK_DIR || process.env.MEDICAL_NOTES_FEEDBACK_DIR;
|
|
467
|
+
if (configured) return configured;
|
|
468
|
+
return path.join(os.homedir(), ".gemini", "medical-notes-workbench", "feedback");
|
|
469
|
+
}
|
|
470
|
+
|
|
471
|
+
async function writeHookEvent(event) {
|
|
472
|
+
const dir = path.join(feedbackRoot(), "hook-events");
|
|
473
|
+
await fs.mkdir(dir, { recursive: true });
|
|
474
|
+
const file = path.join(dir, `${event.recorded_at.replace(/[:.]/g, "-")}-${event.event_id}.json`);
|
|
475
|
+
const tmp = `${file}.tmp`;
|
|
476
|
+
await fs.writeFile(tmp, `${JSON.stringify(event, null, 2)}\n`, "utf8");
|
|
477
|
+
await fs.rename(tmp, file);
|
|
478
|
+
await pruneHookEventFiles(dir);
|
|
479
|
+
}
|
|
480
|
+
|
|
481
|
+
function compactPath(value) {
|
|
482
|
+
const text = String(value || "");
|
|
483
|
+
if (!text) return "";
|
|
484
|
+
const home = os.homedir();
|
|
485
|
+
return text.startsWith(home) ? `~${text.slice(home.length)}` : text;
|
|
486
|
+
}
|
|
487
|
+
|
|
488
|
+
function redactOperationalText(value, maxChars) {
|
|
489
|
+
let text = String(value || "");
|
|
490
|
+
if (text.length > maxChars * 4) {
|
|
491
|
+
text = text.slice(text.length - maxChars * 4);
|
|
492
|
+
}
|
|
493
|
+
text = text.replace(/\b[A-Z0-9._%+-]+@[A-Z0-9.-]+\.[A-Z]{2,}\b/gi, "[email]");
|
|
494
|
+
text = text.replace(
|
|
495
|
+
/\b(api[_-]?key|token|secret|password|authorization|bearer)(\s*[:=]\s*)(["']?)[^\s"']+/gi,
|
|
496
|
+
"$1$2[redacted]",
|
|
497
|
+
);
|
|
498
|
+
text = text.replace(/(--(?:api-key|auth-token|token|secret|password)\s+)([^\s"']+)/gi, "$1[redacted]");
|
|
499
|
+
text = text.replace(/https?:\/\/[^\s)>"]+/g, (url) => {
|
|
500
|
+
const index = url.indexOf("?");
|
|
501
|
+
return index === -1 ? url : `${url.slice(0, index)}?[redacted]`;
|
|
502
|
+
});
|
|
503
|
+
text = text.replace(/\b[A-Za-z0-9_=-]{36,}\b/g, "[redacted-token]");
|
|
504
|
+
if (text.length > maxChars) return `${text.slice(0, Math.max(0, maxChars - 3)).trimEnd()}...`;
|
|
505
|
+
return text;
|
|
506
|
+
}
|
|
507
|
+
|
|
508
|
+
function tail(value, maxChars) {
|
|
509
|
+
const text = String(value || "");
|
|
510
|
+
return text.length > maxChars ? text.slice(text.length - maxChars) : text;
|
|
511
|
+
}
|