mednotes-opencode 0.1.0

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Files changed (430) hide show
  1. package/.opencode/agents/med-chat-triager.md +204 -0
  2. package/.opencode/agents/med-flashcard-maker.md +63 -0
  3. package/.opencode/agents/med-knowledge-architect.md +230 -0
  4. package/.opencode/agents/med-link-graph-curator.md +177 -0
  5. package/.opencode/agents/med-publish-guard.md +62 -0
  6. package/.opencode/commands/flashcards.md +25 -0
  7. package/.opencode/commands/mednotes/create.md +25 -0
  8. package/.opencode/commands/mednotes/enrich.md +27 -0
  9. package/.opencode/commands/mednotes/fix-wiki.md +27 -0
  10. package/.opencode/commands/mednotes/history.md +22 -0
  11. package/.opencode/commands/mednotes/link-body.md +25 -0
  12. package/.opencode/commands/mednotes/link-related.md +27 -0
  13. package/.opencode/commands/mednotes/link.md +27 -0
  14. package/.opencode/commands/mednotes/pdf-library.md +27 -0
  15. package/.opencode/commands/mednotes/process-chats.md +23 -0
  16. package/.opencode/commands/mednotes/setup.md +21 -0
  17. package/.opencode/commands/mednotes/status.md +27 -0
  18. package/.opencode/commands/mednotes/telemetry.md +27 -0
  19. package/.opencode/commands/report.md +26 -0
  20. package/.opencode/mednotes/AGENTS.md +57 -0
  21. package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
  22. package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
  23. package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
  24. package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
  25. package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
  26. package/.opencode/mednotes/contracts/.gitkeep +1 -0
  27. package/.opencode/mednotes/contracts/agents.json +116 -0
  28. package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
  29. package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
  30. package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
  31. package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
  32. package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
  33. package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
  34. package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
  35. package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
  36. package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
  37. package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
  38. package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
  39. package/.opencode/mednotes/docs/extension-docs.md +40 -0
  40. package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
  41. package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
  42. package/.opencode/mednotes/docs/merge-policy.md +110 -0
  43. package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
  44. package/.opencode/mednotes/docs/semantic-linker.md +141 -0
  45. package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
  46. package/.opencode/mednotes/docs/triage-policy.md +187 -0
  47. package/.opencode/mednotes/docs/vault-version-control.md +758 -0
  48. package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
  49. package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
  50. package/.opencode/mednotes/hooks/hooks.json +79 -0
  51. package/.opencode/mednotes/package-lock.json +6361 -0
  52. package/.opencode/mednotes/package.json +15 -0
  53. package/.opencode/mednotes/pyproject.toml +48 -0
  54. package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
  55. package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
  56. package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
  57. package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
  58. package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
  59. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
  60. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
  61. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
  62. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
  63. package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
  64. package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
  65. package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
  66. package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
  67. package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
  68. package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
  69. package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
  70. package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
  71. package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
  72. package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
  73. package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
  74. package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
  75. package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
  76. package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
  77. package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
  78. package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
  79. package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
  80. package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
  81. package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
  82. package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
  83. package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
  84. package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
  85. package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
  86. package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
  87. package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
  88. package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
  89. package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
  90. package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
  91. package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
  92. package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
  93. package/.opencode/mednotes/scripts/run_python.mjs +109 -0
  94. package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
  95. package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
  96. package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
  97. package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
  98. package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
  99. package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
  100. package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
  101. package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
  102. package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
  103. package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
  104. package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
  105. package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
  106. package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
  107. package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
  108. package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
  109. package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
  110. package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
  111. package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
  112. package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
  113. package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
  114. package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
  115. package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
  116. package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
  117. package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
  118. package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
  119. package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
  120. package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
  121. package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
  122. package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
  123. package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
  124. package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
  125. package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
  126. package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
  127. package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
  128. package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
  129. package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
  130. package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
  131. package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
  132. package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
  133. package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
  134. package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
  135. package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
  136. package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
  137. package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
  138. package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
  139. package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
  140. package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
  141. package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
  142. package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
  143. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
  144. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
  145. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
  146. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
  147. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
  148. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
  149. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
  150. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
  151. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
  152. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
  153. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
  154. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
  155. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
  156. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
  157. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
  158. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
  159. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
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  161. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
  162. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
  163. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
  164. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
  165. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
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  167. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
  168. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
  169. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
  170. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
  171. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
  172. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
  173. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
  174. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
  175. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
  176. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
  177. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
  178. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
  179. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
  180. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
  181. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
  182. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
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  186. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
  187. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
  188. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
  189. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
  190. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
  191. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
  192. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
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  195. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
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  239. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/agents.py +1767 -0
  240. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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  243. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
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@@ -0,0 +1,196 @@
1
+ from __future__ import annotations
2
+
3
+ from typing import Literal
4
+
5
+ from pydantic import Field, StrictBool, StrictInt, StrictStr, model_validator
6
+
7
+ from mednotes.kernel.base import ContractModel, JsonObject
8
+
9
+ AuditWorkflow = Literal["process-chats", "fix-wiki", "link", "unknown"]
10
+ AuditStatus = Literal["clean", "findings", "blocked"]
11
+ AuditSeverity = Literal["info", "warning", "contract_violation", "blocking_candidate"]
12
+ AuditConfidence = Literal["low", "medium", "high"]
13
+ RecommendedAction = Literal["ignore", "document", "prompt_hardening", "test_fixture", "runtime_guardrail"]
14
+ CanonicalArtifactKind = Literal[
15
+ "triage_note_plan",
16
+ "raw_coverage",
17
+ "manifest",
18
+ "receipt",
19
+ "style_rewrite_output",
20
+ "human_decision_backlog",
21
+ "unknown",
22
+ ]
23
+
24
+
25
+ class AgentTranscriptSource(ContractModel):
26
+ schema_: Literal["medical-notes-workbench.agent-transcript-source.v1"] = Field(
27
+ "medical-notes-workbench.agent-transcript-source.v1",
28
+ alias="schema",
29
+ )
30
+ path_label: StrictStr
31
+ source_kind: Literal["transcript", "workflow_payload", "final_report", "runtime_log"]
32
+ present: StrictBool
33
+ format: Literal["json", "jsonl", "text", "missing", "unknown"]
34
+
35
+
36
+ class ToolCallObservation(ContractModel):
37
+ """Normalized tool-call fact extracted from a harness transcript.
38
+
39
+ The audit layer stores facts only: runtime shape, tool name, status, target
40
+ and whether the tool output exposed an executable FSM directive. Policy is
41
+ decided later by the audit rules, not while parsing raw JSON.
42
+ """
43
+
44
+ schema_: Literal["medical-notes-workbench.tool-call-observation.v1"] = Field(
45
+ "medical-notes-workbench.tool-call-observation.v1",
46
+ alias="schema",
47
+ )
48
+ index: StrictInt = Field(ge=0)
49
+ tool_name: StrictStr = Field(min_length=1)
50
+ status: StrictStr = ""
51
+ command_text: StrictStr = ""
52
+ target_path: StrictStr = ""
53
+ output_excerpt: StrictStr = ""
54
+ agent_effect_pending_signal: StrictBool = False
55
+ target_is_agy_config_skill: StrictBool = False
56
+ stale_materialized_skill_signal: StrictBool = False
57
+ parameter_keys: list[StrictStr] = Field(default_factory=list)
58
+
59
+
60
+ class SubagentInvocationObservation(ContractModel):
61
+ schema_: Literal["medical-notes-workbench.subagent-invocation-observation.v1"] = Field(
62
+ "medical-notes-workbench.subagent-invocation-observation.v1",
63
+ alias="schema",
64
+ )
65
+ index: StrictInt = Field(ge=0)
66
+ tool_name: StrictStr = Field(min_length=1)
67
+ agent_name: StrictStr = ""
68
+ prompt_length: StrictInt = Field(ge=0)
69
+ has_work_item: StrictBool = False
70
+ has_raw_content_markers: StrictBool = False
71
+
72
+
73
+ class CanonicalArtifactObservation(ContractModel):
74
+ schema_: Literal["medical-notes-workbench.canonical-artifact-observation.v1"] = Field(
75
+ "medical-notes-workbench.canonical-artifact-observation.v1",
76
+ alias="schema",
77
+ )
78
+ index: StrictInt = Field(ge=0)
79
+ tool_name: StrictStr = Field(min_length=1)
80
+ path: StrictStr = Field(min_length=1)
81
+ artifact_kind: CanonicalArtifactKind
82
+ after_subagent: StrictBool = False
83
+
84
+
85
+ class WorkflowDeviationFinding(ContractModel):
86
+ schema_: Literal["medical-notes-workbench.workflow-deviation-finding.v1"] = Field(
87
+ "medical-notes-workbench.workflow-deviation-finding.v1",
88
+ alias="schema",
89
+ )
90
+ code: StrictStr = Field(min_length=1)
91
+ workflow: AuditWorkflow
92
+ severity: AuditSeverity
93
+ confidence: AuditConfidence
94
+ evidence_ref: StrictStr = Field(min_length=1)
95
+ expected_contract: StrictStr = Field(min_length=1)
96
+ observed_behavior: StrictStr = Field(min_length=1)
97
+ recommended_action: RecommendedAction
98
+ promotion_gate: StrictStr = Field(min_length=1)
99
+
100
+
101
+ class WorkflowTranscriptAuditSummary(ContractModel):
102
+ schema_: Literal["medical-notes-workbench.workflow-transcript-audit-summary.v1"] = Field(
103
+ "medical-notes-workbench.workflow-transcript-audit-summary.v1",
104
+ alias="schema",
105
+ )
106
+ finding_count: StrictInt = Field(ge=0)
107
+ blocking_candidate_count: StrictInt = Field(ge=0)
108
+ contract_violation_count: StrictInt = Field(ge=0)
109
+ warning_count: StrictInt = Field(ge=0)
110
+ info_count: StrictInt = Field(ge=0)
111
+ highest_severity: AuditSeverity
112
+ recommended_next_action: StrictStr = Field(min_length=1)
113
+
114
+
115
+ class HardeningRecommendation(ContractModel):
116
+ schema_: Literal["medical-notes-workbench.hardening-recommendation.v1"] = Field(
117
+ "medical-notes-workbench.hardening-recommendation.v1",
118
+ alias="schema",
119
+ )
120
+ action: RecommendedAction
121
+ code: StrictStr = Field(min_length=1)
122
+ rationale: StrictStr = Field(min_length=1)
123
+ target: StrictStr = Field(min_length=1)
124
+
125
+
126
+ class AgentTranscriptAuditInput(ContractModel):
127
+ schema_: Literal["medical-notes-workbench.agent-transcript-audit-input.v1"] = Field(
128
+ "medical-notes-workbench.agent-transcript-audit-input.v1",
129
+ alias="schema",
130
+ )
131
+ workflow: AuditWorkflow = "unknown"
132
+ transcript_path: StrictStr = ""
133
+ workflow_payload_path: StrictStr = ""
134
+ final_report_path: StrictStr = ""
135
+ runtime_log_paths: list[StrictStr] = Field(default_factory=list)
136
+
137
+
138
+ class WorkflowTranscriptAuditResult(ContractModel):
139
+ schema_: Literal["medical-notes-workbench.workflow-transcript-audit.v1"] = Field(
140
+ "medical-notes-workbench.workflow-transcript-audit.v1",
141
+ alias="schema",
142
+ )
143
+ status: AuditStatus
144
+ workflow: AuditWorkflow
145
+ transcript_present: StrictBool
146
+ workflow_payload_present: StrictBool
147
+ final_report_present: StrictBool
148
+ blocked_reason: StrictStr = ""
149
+ next_action: StrictStr = ""
150
+ finding_count: StrictInt = Field(ge=0)
151
+ summary: WorkflowTranscriptAuditSummary
152
+ findings: list[WorkflowDeviationFinding] = Field(default_factory=list)
153
+ hardening_recommendations: list[HardeningRecommendation] = Field(default_factory=list)
154
+ behavior_case_candidates: list[JsonObject] = Field(default_factory=list)
155
+ sources: list[AgentTranscriptSource] = Field(default_factory=list)
156
+
157
+ @model_validator(mode="after")
158
+ def _validate_counts(self) -> WorkflowTranscriptAuditResult:
159
+ finding_count = len(self.findings)
160
+ if self.finding_count != finding_count or self.summary.finding_count != finding_count:
161
+ raise ValueError("finding_count must match findings length")
162
+ blocking_candidate_count = sum(1 for item in self.findings if item.severity == "blocking_candidate")
163
+ contract_violation_count = sum(1 for item in self.findings if item.severity == "contract_violation")
164
+ warning_count = sum(1 for item in self.findings if item.severity == "warning")
165
+ info_count = sum(1 for item in self.findings if item.severity == "info")
166
+ if (
167
+ self.summary.blocking_candidate_count != blocking_candidate_count
168
+ or self.summary.contract_violation_count != contract_violation_count
169
+ or self.summary.warning_count != warning_count
170
+ or self.summary.info_count != info_count
171
+ ):
172
+ raise ValueError("summary severity counts must match findings")
173
+ if self.summary.highest_severity != _highest_severity(self.findings):
174
+ raise ValueError("summary highest_severity must match findings")
175
+ if self.workflow != "unknown" and any(item.workflow != self.workflow for item in self.findings):
176
+ raise ValueError("finding workflow must match audit workflow")
177
+ if self.status == "clean" and self.findings:
178
+ raise ValueError("clean audit cannot include findings")
179
+ has_blocking_candidate = any(item.severity == "blocking_candidate" for item in self.findings)
180
+ if self.status == "findings" and not self.findings:
181
+ raise ValueError("findings audit requires at least one finding")
182
+ if self.status == "findings" and has_blocking_candidate:
183
+ raise ValueError("blocking_candidate finding requires blocked status")
184
+ if self.status == "blocked" and not has_blocking_candidate:
185
+ raise ValueError("blocked audit requires a blocking_candidate finding")
186
+ return self
187
+
188
+
189
+ def _highest_severity(findings: list[WorkflowDeviationFinding]) -> AuditSeverity:
190
+ if any(item.severity == "blocking_candidate" for item in findings):
191
+ return "blocking_candidate"
192
+ if any(item.severity == "contract_violation" for item in findings):
193
+ return "contract_violation"
194
+ if any(item.severity == "warning" for item in findings):
195
+ return "warning"
196
+ return "info"