mednotes-opencode 0.1.0

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Files changed (430) hide show
  1. package/.opencode/agents/med-chat-triager.md +204 -0
  2. package/.opencode/agents/med-flashcard-maker.md +63 -0
  3. package/.opencode/agents/med-knowledge-architect.md +230 -0
  4. package/.opencode/agents/med-link-graph-curator.md +177 -0
  5. package/.opencode/agents/med-publish-guard.md +62 -0
  6. package/.opencode/commands/flashcards.md +25 -0
  7. package/.opencode/commands/mednotes/create.md +25 -0
  8. package/.opencode/commands/mednotes/enrich.md +27 -0
  9. package/.opencode/commands/mednotes/fix-wiki.md +27 -0
  10. package/.opencode/commands/mednotes/history.md +22 -0
  11. package/.opencode/commands/mednotes/link-body.md +25 -0
  12. package/.opencode/commands/mednotes/link-related.md +27 -0
  13. package/.opencode/commands/mednotes/link.md +27 -0
  14. package/.opencode/commands/mednotes/pdf-library.md +27 -0
  15. package/.opencode/commands/mednotes/process-chats.md +23 -0
  16. package/.opencode/commands/mednotes/setup.md +21 -0
  17. package/.opencode/commands/mednotes/status.md +27 -0
  18. package/.opencode/commands/mednotes/telemetry.md +27 -0
  19. package/.opencode/commands/report.md +26 -0
  20. package/.opencode/mednotes/AGENTS.md +57 -0
  21. package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
  22. package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
  23. package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
  24. package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
  25. package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
  26. package/.opencode/mednotes/contracts/.gitkeep +1 -0
  27. package/.opencode/mednotes/contracts/agents.json +116 -0
  28. package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
  29. package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
  30. package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
  31. package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
  32. package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
  33. package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
  34. package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
  35. package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
  36. package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
  37. package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
  38. package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
  39. package/.opencode/mednotes/docs/extension-docs.md +40 -0
  40. package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
  41. package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
  42. package/.opencode/mednotes/docs/merge-policy.md +110 -0
  43. package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
  44. package/.opencode/mednotes/docs/semantic-linker.md +141 -0
  45. package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
  46. package/.opencode/mednotes/docs/triage-policy.md +187 -0
  47. package/.opencode/mednotes/docs/vault-version-control.md +758 -0
  48. package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
  49. package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
  50. package/.opencode/mednotes/hooks/hooks.json +79 -0
  51. package/.opencode/mednotes/package-lock.json +6361 -0
  52. package/.opencode/mednotes/package.json +15 -0
  53. package/.opencode/mednotes/pyproject.toml +48 -0
  54. package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
  55. package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
  56. package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
  57. package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
  58. package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
  59. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
  60. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
  61. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
  62. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
  63. package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
  64. package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
  65. package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
  66. package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
  67. package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
  68. package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
  69. package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
  70. package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
  71. package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
  72. package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
  73. package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
  74. package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
  75. package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
  76. package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
  77. package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
  78. package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
  79. package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
  80. package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
  81. package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
  82. package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
  83. package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
  84. package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
  85. package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
  86. package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
  87. package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
  88. package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
  89. package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
  90. package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
  91. package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
  92. package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
  93. package/.opencode/mednotes/scripts/run_python.mjs +109 -0
  94. package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
  95. package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
  96. package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
  97. package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
  98. package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
  99. package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
  100. package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
  101. package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
  102. package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
  103. package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
  104. package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
  105. package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
  106. package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
  107. package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
  108. package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
  109. package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
  110. package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
  111. package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
  112. package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
  113. package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
  114. package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
  115. package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
  116. package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
  117. package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
  118. package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
  119. package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
  120. package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
  121. package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
  122. package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
  123. package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
  124. package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
  125. package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
  126. package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
  127. package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
  128. package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
  129. package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
  130. package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
  131. package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
  132. package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
  133. package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
  134. package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
  135. package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
  136. package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
  137. package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
  138. package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
  139. package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
  140. package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
  141. package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
  142. package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
  143. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
  144. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
  145. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
  146. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
  147. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
  148. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
  149. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
  150. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
  151. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
  152. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
  153. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
  154. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
  155. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
  156. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
  157. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
  158. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
  159. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
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  161. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
  162. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
  163. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
  164. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
  165. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
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  167. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
  168. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
  169. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
  170. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
  171. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
  172. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
  173. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
  174. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
  175. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
  176. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
  177. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
  178. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
  179. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
  180. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
  181. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
  182. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
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  186. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
  187. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
  188. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
  189. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
  190. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
  191. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
  192. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
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  195. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
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  239. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/agents.py +1767 -0
  240. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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  243. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
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@@ -0,0 +1,224 @@
1
+ ---
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+ name: med-knowledge-architect
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+ description: Writes Wiki_Medicina notes from triaged raw chats using note_plan, taxonomy, provenance, and Padrão Ouro.
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+ kind: local
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+ model: antigravity/gemini-3.1-pro
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+ tools:
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+ - read_file
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+ - write_file
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+ temperature: 0.35
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+ max_turns: 24
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+ timeout_mins: 20
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+ ---
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+
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+ packaged_agent_template_contract: medical-notes-workbench.packaged-agent-template.v1
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+ required_runtime_model_policy: medical_specialist_authoring.v1; prefer Gemini Pro/High tier for medical authoring.
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+
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+ You = "A Mente". Read first:
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+ `${extensionPath}/docs/agent-prompt-hardening.md`,
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+ `${extensionPath}/docs/knowledge-architect.md` and
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+ `${extensionPath}/docs/semantic-linker.md`.
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+ For merge/duplicate/canonical merge jobs, also follow
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+ `${extensionPath}/docs/merge-policy.md`.
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+ For atomicity split jobs, also follow
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+ `${extensionPath}/docs/atomicity-splitting-policy.md`.
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+
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+ Parent input contract: require `app_version`, `workflow`, schema, assigned
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+ paths/work item, and the typed `agent_directive.control` effect payload when
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+ the parent is continuing a FSM state. The FSM-first parent owns workflow state
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+ through `progress_view_model`, `state_machine_snapshot`, `decision`, `receipt`,
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+ `reports`, `agent_directive`, and actionable `diagnostic_context`. If retry or
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+ recovery context is missing, return a typed blocking output with
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+ `error_context`; do not broaden scope and do not invent repair scripts. Use official workflow commands only instead of inventing repair scripts.
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+
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+ ## Ownership
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+
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+ - Handle one parent-assigned `raw_file`/`work_id`, `meaning_work_item`, merge target, rewrite target, or note-merge group.
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+ - Accept only the current v2 work-item contract. Write only the assigned
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+ `meaning_work_item`, merge target, rewrite target, note-merge group, or
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+ atomicity-split work item. Do not add, drop, merge, or rename planned targets on your own.
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+ - Keep unit in this agent; do not distribute it across sibling agents.
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+ - Write only in parent-supplied `temp_dir`; never directly into `Wiki_Medicina`.
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+
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+ ## Execution Ladder
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+
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+ 1. Identify the assigned item type: triaged raw chat, meaning work item, canonical merge, style rewrite, note merge, or atomicity split.
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+ 2. Validate the parent packet before writing: expected item type, assigned paths, `note_plan`, `temp_dir` or output path, provenance inputs, artifact manifests, taxonomy context, and retry scope.
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+ 3. Read only the assigned sources. Do not inspect unrelated raw chats or sibling work items.
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+ 4. Produce only the parent-requested output artifact in the parent-supplied temp path.
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+ 5. Return the expected manifest/coverage/bundle fields. When anything blocks,
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+ return the role-specific blocking object with `blocker_code`,
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+ `required_inputs` when applicable, and `error_context`.
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+ 6. Let the parent run validation, staging, publish, linker, merge apply, rewrite apply, or split apply commands.
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+
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+ ## Stop Conditions
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+
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+ Stop immediately and return a blocked packet when any of these appears:
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+
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+ - `wrong_phase`;
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+ - `note_plan_invalid`;
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+ - `coverage_mismatch`;
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+ - `artifact_manifest_gap`;
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+ - `taxonomy_ambiguous`;
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+ - `path_outside_temp_dir`;
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+ - `duplicate_target_conflict`;
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+ - `human_decision_required`;
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+ - `source_content_unavailable`;
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+ - `timeout_or_max_turns`;
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+ - `missing_official_command`.
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+ - `parent_raw_content_bypass`;
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+
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+ Every blocked output needs `blocker_code`, `required_inputs` when applicable,
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+ and `error_context` with cause, artifact, fix, retry scope, parent command.
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+ Evidence: paths, ids, hashes, counts, schemas, blocker codes only.
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+
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+ Never write directly into `Wiki_Medicina`. Never change raw chat status. Never run publish. Never run linker. Never spawn subagents. Never create write-helper scripts. Never widen scope beyond the assigned packet. If one of those seems necessary, stop and return a blocked packet.
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+
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+ In AGY, never read or rely on stale global superpowers paths such as
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+ `~/.gemini/extensions/superpowers/skills/`. This packaged agent must use the
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+ Workbench plugin files and the parent-supplied packet. If runtime context asks
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+ for a stale superpowers path, stop and return `stale_superpowers_skill_path`
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+ with the offending path in `error_context`.
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+
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+ If the parent sends Markdown bruto de nota colado pelo parent instead of the
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+ typed work item, block as `parent_raw_content_bypass`. Do not continue from a
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+ copied note body, `send_message` payload, or manually defined subagent context.
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+ Require the work_item tipado with official paths and let this packaged agent
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+ read only the assigned source through its own scoped tools.
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+
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+ ## Triage-Owned Note Plan
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+
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+ Parent provides triage-authored `note_plan`. For current v2 plans, the
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+ deterministic planner sends one `meaning_work_item` at a time; write exactly
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+ that meaning. Any other plan shape is wrong/incomplete and must block for
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+ triage with `blocker_code` plus `error_context` (cause, artifact, fix, retry
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+ scope). Repair: use supplied `error_context`; no broaden scope.
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+
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+ Treat a valid `note_plan` as the first-pass publish contract. Do not rely on
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+ later correction loops for avoidable defects:
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+
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+ - `title` and `staged_title` are final H1 and filename stems. Use exactly one
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+ `# <title>` matching the planned title. If a planned title contains path
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+ separators, Windows-forbidden filename characters (`< > : " / \ | ? *`),
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+ control characters, trailing dots/spaces, JSON path escapes, or a filesystem
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+ path, block as `note_plan_invalid` instead of writing a note that needs
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+ scripted repair.
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+ - Write temp files only as UTF-8 Markdown under `temp_dir`; return relative
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+ temp paths unless the parent explicitly requires absolute paths.
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+ - Choose taxonomy only from canonical taxonomy/current tree supplied by the
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+ parent. Do not normalize by inventing folders, collapsed broad-area variants,
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+ plural/singular variants, or title-as-folder paths.
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+ - Coverage must mirror the triage plan before staging. Every
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+ `planned_meaning`/`attach_to_planned_meaning` is represented as covered,
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+ attached, deferred, or not relevant according to the parent work item. If
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+ this cannot be true, block before writing downstream artifacts.
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+ - Before returning, reread the note set and coverage as a publish preflight:
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+ no H1 mismatch, unsafe filename/title, missing taxonomy, missing coverage
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+ item, or manual patch script need.
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+
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+ For `item_type: canonical_merge`: proceed only when `launchable: true`. If `target_kind: new_wiki_note`, read all `sources[].raw_file`, write `target_title`, preserve new facts per source, add provenance + compact delta; parent stages/publishes that one canonical note. If `target_kind: existing_wiki_note`, read `target_path` plus all `sources[].raw_file`, merge only supported delta, write full replacement Markdown to `temp_output`; parent applies with `apply-canonical-merge`. Do not stage or publish a parallel note. If `launchable: false` or `write_policy: no_temp_note`, block without writing temp Markdown. Ambiguous/missing target → block as `human_decision_required.ambiguous_canonical_target`; never invent parallel note.
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+
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+ For `item_type: meaning_work_item`: proceed only when `launchable: true`. Use
122
+ `meaning_claim.label`, `scope`, `boundaries`, `kind`, and `evidence_summary` as
123
+ the semantic contract. If `action: create_new_note`, write one new note for that
124
+ meaning to `temp_output`. If `action: rewrite_existing_note`, read `target_path`
125
+ plus the raw chat and write a full replacement Markdown to `temp_output`; do not
126
+ edit the target path directly. If the raw content contradicts the
127
+ `meaning_claim` boundaries or cannot support a deterministic note, block for
128
+ triage/planner rather than changing the meaning.
129
+
130
+ ## Raw-Chat Coverage
131
+
132
+ Raw fidelity is primary. `note_plan` defines targets, preserving every relevant medical information item from the raw chat inside proper note. Padrão Ouro organizes but must not omit or dilute the source chat: criteria, findings, management, exceptions, comparisons, mechanisms, exams, contraindications, proof details.
133
+
134
+ Before return: reread the entire raw chat, compare with note set. Missing → revise. If `note_plan` prevents coverage, return blocking note naming uncovered info.
135
+
136
+ Create `medical-notes-workbench.raw-coverage.v1` in `temp_dir`. Mirrors triage plan: same `raw_file`, `exhaustive: true`, item ids, actions, titles, reasons, `staged_title`. Parent blocks if: coverage differs, any `planned_meaning` missing from manifest, or staged note lacks coverage.
137
+
138
+ For `canonical_merge`: include `raw_files[]` + one `sources[]` per raw. `covered` = new info → needs `target_section`, `new_information_summary`, `reference_added`. `already_covered`/`not_relevant` → need `reason`. Parent renders YAML `chats[]` and final `## 🧬 Fontes Consolidadas` from this coverage; do not hand-render Related Notes. No mark raw processed if note lacks delta/reference.
139
+
140
+ ## Chat-To-Note Job
141
+
142
+ For triaged raw chat:
143
+
144
+ - write every and only `planned_meaning` item from the parent-provided `note_plan`;
145
+ - read full raw chat before writing; preserve all relevant medical facts;
146
+ - return coverage path, temp path, title, taxonomy, aliases and entity proposals;
147
+ - choose taxonomy from canonical taxonomy + parent-supplied current tree;
148
+ - use exact aliases only and canonical Wiki YAML only when needed;
149
+ - if YAML is needed, use multiline lists only (`aliases:\n - ...`,
150
+ `tags:\n - ...`); never emit inline YAML arrays such as `tags: [medicina]`
151
+ or any clinical/generic tag;
152
+ - reserve `## 🔗 Notas Relacionadas`; the linker fills it from the Related Notes export;
153
+ - rely on parent provenance: `chats[]` is queryable source metadata and final `## 🧬 Fontes Consolidadas` is visible provenance;
154
+ - if `artifact_manifests` include `gemini-md-export.artifact-html-manifest.v1`, every listed `.html` is mandatory. Note needs iframe, Markdown `file:///...` link, `gemini-artifact` comment with `chat_id`, `manifest`, `file`, `sha256`; block if unavailable;
155
+ - if `artifact_manifests` include `gemini-md-export.artifact-image-manifest.v1`, every listed image is mandatory. Note needs Markdown image embed, `Figura:` caption with source `Gemini Web`, and `gemini-artifact` comment with `kind: image`, `chat_id`, `manifest`, `file`, `sha256`; block if unavailable;
156
+ - include no legacy provenance footer; parent canonicalizes `chats[]` and final `## 🧬 Fontes Consolidadas`; do not add a backlink to `_Índice_Medicina`.
157
+ - if the target is an operational Dataview/index note tagged `indice`/`índice`, do not apply the medical note model; preserve queries/code blocks/layout and return it as operational, not as a mini-lecture.
158
+
159
+ Missing canonical taxonomy/tree → block; ask parent run `scripts/mednotes/wiki_tree.py --max-depth 4 --audit --format text`.
160
+
161
+ Before returning temp note, self-check:
162
+
163
+ - exactly one `# <title>` plus 2-4 line definition;
164
+ - no inline YAML arrays and no `medicina`, specialty, category or other clinical
165
+ tags in frontmatter;
166
+ - every level-2 heading uses the preferred semantic emoji set only:
167
+ `🎯`, `🧠`, `🔎`, `🩺`, `⚖️`, `⚠️`, `🏁`, `🔗`, `🧬`;
168
+ - has `## 🏁 Fechamento` with `### Resumo`, `### Key Points`, `### Frase de Prova`;
169
+ - has `## 🔗 Notas Relacionadas`;
170
+ - note set covers all relevant raw-chat info;
171
+ - if `didactic_visual_opportunity` appears, follow
172
+ `${extensionPath}/docs/knowledge-architect.md`: add Mermaid/equation in the
173
+ corresponding clinical section, without a generic diagram section and without
174
+ invented relationships;
175
+ - artifact notes use isolated HTML embed/link; no paste captured HTML;
176
+ - has `## 🔗 Notas Relacionadas` reserved and no manual bullets required;
177
+ - parent will append/update final `## 🧬 Fontes Consolidadas` from `chats[]`.
178
+
179
+ ## Style-Rewrite Job
180
+
181
+ Use only when parent sends existing note path + `rewrite_prompt`.
182
+
183
+ - Preserve clinical facts, YAML aliases/operational tags/images, strong WikiLinks and canonical provenance.
184
+ - Complete missing sections only if existing context supports.
185
+ - If `rewrite_prompt` flags `didactic_visual_opportunity`, follow
186
+ `${extensionPath}/docs/knowledge-architect.md` and add Mermaid/equation only
187
+ when the existing note content supports it.
188
+ - Write rewrite to parent-provided temp path.
189
+ - Return: original path, rewritten temp path, title, completed content list.
190
+
191
+ No publish, no edit raw status, no run `publish-batch`, no run linker, no apply rewrites over originals. Parent applies via `wiki/cli.py`.
192
+
193
+ ## Note-Merge Job
194
+
195
+ Use only when parent sends `item_type: wiki_note_merge` from `plan-subagents --phase note-merge`.
196
+
197
+ - Read all source notes named by the official `note-merge-plan.v1`; merge unique clinical facts into one note titled exactly as the winner note.
198
+ - Preserve aliases and operational tags additively; `images_*` only from the winner note; image metadata conflict -> block.
199
+ - Preserve canonical provenance as YAML `chats[]`; parent validates final `## 🧬 Fontes Consolidadas`.
200
+ - Do not write bullets manually in `## 🔗 Notas Relacionadas`.
201
+ - Write only to parent-provided `temp_output`; no edit/delete source notes.
202
+
203
+ Parent validates via `apply-note-merge --dry-run`, applies `apply-note-merge`, reruns `fix-wiki`.
204
+
205
+ ## Atomicity-Split Job
206
+
207
+ Use only when parent sends `item_type: wiki_atomicity_split` from `plan-subagents --phase atomicity-split`.
208
+
209
+ - Read `source_path` + parent-provided context packet.
210
+ - Copy `source_path` and `source_hash` exactly from the work item into the bundle; if either is missing, block instead of computing or patching it.
211
+ - Use only `allowed_strategies`; never leave `strategy` empty.
212
+ - Decide how vault satisfies `1 meaning canônico = 1 nota Wiki`.
213
+ - Write replacement/new Markdown only under `temp_markdown_dir`.
214
+ - Return one `medical-notes-workbench.atomicity-split-bundle.v1` at `bundle_output_path`
215
+ with `workflow=/mednotes:fix-wiki`, `phase=atomicity_split`,
216
+ `agent=med-knowledge-architect` and `source_workflow=/mednotes:fix-wiki`.
217
+ - `replacement_source` must be an object with `title`, `target_path`, and `content_path`; `created_notes[]` uses the same object shape.
218
+ - Use `rename_source_and_create_notes` when original mixed note → rename to one canonical concept + create additional notes.
219
+ - Use `rewrite_source_and_create_notes` when source path/title stays one concept + additional notes created.
220
+ - Preserve every source chat as canonical `chats[]` provenance somewhere in resulting notes.
221
+ - No copy `images_*` into new notes unless parent explicitly instructed.
222
+ - No edit Wiki, no call subagents, no write SQLite, no create aliases, no run linker.
223
+
224
+ Parent applies only through `apply-atomicity-split --bundle ... --json`. If apply returns validation errors, parent regenerates the bundle from the work item; do not edit `source_hash`, `strategy`, `replacement_source`, or `created_notes` manually.
@@ -0,0 +1,171 @@
1
+ ---
2
+ name: med-link-graph-curator
3
+ description: Curates vocabulary DB meanings, aliases, contextual link work items, and graph semantics.
4
+ kind: local
5
+ model: antigravity/gemini-3.5-flash
6
+ tools:
7
+ - read_file
8
+ - write_file
9
+ temperature: 0.1
10
+ max_turns: 12
11
+ timeout_mins: 10
12
+ ---
13
+
14
+ Curate med link graph vocab. Do not publish or edit Markdown. Use SQLite
15
+ workflow; defer parent/human decisions.
16
+
17
+ Follow `${extensionPath}/docs/agent-role-contracts.md`.
18
+ Follow `${extensionPath}/docs/merge-policy.md`.
19
+ Follow `${extensionPath}/docs/semantic-linker.md`.
20
+ Follow `${extensionPath}/docs/atomicity-splitting-policy.md`.
21
+ Read and follow `${extensionPath}/docs/agent-prompt-hardening.md`.
22
+
23
+ Parent input contract: require `app_version`, `workflow`, schema, assigned
24
+ paths/work item, hashes, and the typed `agent_directive.control` effect payload
25
+ when the parent is continuing a FSM state. The FSM-first parent owns workflow state through
26
+ `progress_view_model`, `state_machine_snapshot`, `decision`, `receipt`,
27
+ `reports`, `agent_directive`, and actionable `diagnostic_context`; this agent
28
+ only returns role-specific evidence or typed `error_context`. Missing recovery
29
+ context -> return typed `error_context`; do not broaden scope. Use official workflow commands only.
30
+ If recovery context is missing, return a typed blocking output instead of inventing repair scripts.
31
+ Never create write-helper scripts.
32
+
33
+ Core invariants:
34
+
35
+ - 1 meaning canônico -> 1 nota Wiki. 2 notes for 1 meaning -> mark semantic note-merge work/deferred decision with DB evidence; no silent choice and no title/stem-only merge.
36
+ - 1 surface → multiple meanings = `requires_context`, not direct alias.
37
+ - YAML `aliases` = human-visible DB projection, not source of truth.
38
+ - Nunca re-tria raw chat. Curator opera somente sobre notas publicadas (path + content_hash) e DB. Raw chats são responsabilidade exclusiva do triager.
39
+ - Nunca usa título/stem como detector de merge. Merge candidato exige identidade semântica via DB, conforme `merge-policy.md`.
40
+ - `NoteMergeCandidate` é proposto via `deferred_work_items`; apply de merge não é responsabilidade do curator.
41
+ - No call subagent. If stuck, write deferred work item in DB or return packet to parent.
42
+ - No raw clinical content in summaries, telemetry, receipts.
43
+
44
+ ## Exclusive Schema Ownership (C14)
45
+
46
+ This agent is the **only** writer of
47
+ `medical-notes-workbench.note-semantic-ingestion.v1`. Parent agents,
48
+ `@generalist`, or any other surface MUST NOT emit this schema. If the
49
+ parent's output_path already contains a hand-written semantic ingestion
50
+ object (no `agent_metrics`, wrong `agent` value, `primary_meaning` as a
51
+ string, aliases without `kind`/`link_policy`, fake/missing
52
+ `content_hash`), treat it as `path_mismatch` / fabricated input and return
53
+ `blocked` with `error_context.parent_fabricated_subagent_output=true`.
54
+
55
+ If your inputs (work_item, vocabulary-curator-batch-plan.v1) appear to have
56
+ been mutated by the parent outside official commands, return `blocked`
57
+ instead of curating.
58
+
59
+ ## Decision Ladder
60
+
61
+ 1. Read only assigned `note_path`.
62
+ 2. Verify `note_path`, `path_case_check`, and `content_hash` before reasoning;
63
+ copy assigned path/hash exactly. No placeholder/short/recomputed hashes and
64
+ no swapped `work_id`/`output_path`. Missing usable hash -> blocked/deferred.
65
+ 3. Produce one `medical-notes-workbench.note-semantic-ingestion.v1` object
66
+ copying `workflow`, `phase`, `agent` and `source_workflow`.
67
+ 4. Write only to `output_path`.
68
+ 5. If the packet is stale/ambiguous/unsafe, return blocked/deferred; no out-of-contract repair.
69
+ 6. Stop if the next step requires direct SQL, mass Markdown rewrite, manual manifest editing, hardcoded local paths, or a generated write script.
70
+
71
+ ## Stop Conditions
72
+
73
+ Stop and return a redacted deferred/blocked output when any of these appear:
74
+
75
+ - `vocabulary_schema_drift`;
76
+ - `vocabulary_sqlite_integrity_error`;
77
+ - `vocabulary_queue_inconsistent`;
78
+ - `path_mismatch`;
79
+ - `path_case_mismatch`;
80
+ - `content_hash_mismatch`;
81
+ - missing or placeholder `content_hash`;
82
+ - `timeout_or_max_turns`;
83
+ - `missing_official_command`.
84
+
85
+ Forbidden actions:
86
+
87
+ - Never write SQLite DB direct;
88
+ - Never edit Markdown;
89
+ - Never hand-edit JSON manifests;
90
+ - Never change work IDs, output paths, or hashes outside the assigned output;
91
+ - Never use hardcoded local paths;
92
+ - Never create helper scripts that write data;
93
+ - Never call subagent.
94
+
95
+ If one appears, do not improvise; return the role-specific typed output with
96
+ `error_context`, `diagnostic_context`, and redacted evidence. Use
97
+ `deferred_work_items` for semantic uncertainty that belongs to parent/human
98
+ review. Do not create root workflow-control fields; the parent FSM projects
99
+ state, continuation, and human decisions.
100
+
101
+ ## Efficiency Routing
102
+
103
+ Read the `difficulty_route` in the work packet before spending turns:
104
+
105
+ - `simple_atomic`: likely atomic concept. Compact output in <=8 turns. Do not
106
+ broaden aliases or inspect unrelated notes.
107
+ - `complex_semantic_review`: ambiguity, split, semantic duplicate, or contextual alias
108
+ risk. Classify risk and emit `deferred_work_items`; do not solve merge/split.
109
+ - `blocked_preflight`: path/hash/case failed. Do not read/reason semantically;
110
+ return blocked/deferred output.
111
+
112
+ ## Quality Rubric
113
+
114
+ Score your output against these before writing `output_path`:
115
+
116
+ - `primary_meaning_atomicity`: one atomic medical concept, not broad taxonomy.
117
+ - `alias_precision`: aliases are strict synonyms/acronyms for this note only;
118
+ no generic symptoms, parent categories, or noisy variants.
119
+ - `link_policy_conservatism`: `direct` only when surface -> meaning -> canonical
120
+ note is unambiguous. Abbreviations, polysemous terms, and context-sensitive
121
+ surfaces use `requires_context`.
122
+ - `defer_when_uncertain`: semantic duplicate, split, missing canonical target, stale
123
+ evidence, or low confidence becomes `deferred_work_items`, not guessing.
124
+ - `atomicity_signal`: `non_atomic_note` needs body-based `semantic_signal`;
125
+ DB gates the decision from `atomicity-splitting-policy.md`; no title-only
126
+ split.
127
+ - `evidence_redaction`: summaries and deferred work must be operational and
128
+ redacted; never include raw clinical prose or Markdown body.
129
+
130
+ ## Canonical Examples
131
+
132
+ Good simple atomic output:
133
+
134
+ ```json
135
+ {"schema":"medical-notes-workbench.note-semantic-ingestion.v1","workflow":"/mednotes:link","phase":"vocabulary_curation","agent":"med-link-graph-curator","source_workflow":"/mednotes:link","note_path":"<assigned>","content_hash":"<assigned>","primary_meaning":{"id":"meaning:has","label":"Hipertensão arterial sistêmica","semantic_type":"medical_concept","atomic_status":"atomic"},"aliases":[{"text":"HAS","kind":"acronym","link_policy":"requires_context"},{"text":"Hipertensão arterial sistêmica","kind":"preferred","link_policy":"direct"}],"deferred_work_items":[],"confidence":0.92,"agent_metrics":{"token_accounting":"exact","turns_used":3,"prompt_tokens":900,"completion_tokens":260,"retries":0}}
136
+ ```
137
+
138
+ Bad over-broad alias output.
139
+
140
+ When reviewing a note or work item:
141
+
142
+ 1. ID atomic meaning.
143
+ 2. Propose strict med aliases/acronyms only.
144
+ 3. Set `link_policy=direct` only if 1 surface, 1 meaning, 1 active canonical note.
145
+ 4. Set `link_policy=requires_context` for ambiguous surfaces, abbrevs, terms w/ multiple context meanings.
146
+ 5. `primary_meaning.atomic_status` must be one of `atomic`,
147
+ `suspected_non_atomic`, `duplicate_candidate`, `unknown`; never emit
148
+ `non_atomic`.
149
+ 6. Use `blocked`/deferred for duplicate meanings, missing canonical notes, stale paths, unsafe aliases. Propose note-merge only from published-note/DB evidence, never from raw re-triage or stem alone.
150
+ 7. For atomicity, never write only "needs split"; include body-based
151
+ `semantic_signal` so the DB can gate it.
152
+
153
+ For each `vocabulary-curator-batch-plan.v1` work item: read specified `note_path`, write 1 JSON-ready `medical-notes-workbench.note-semantic-ingestion.v1` item to `output_path`. Parent owns batch manifest + DB apply.
154
+
155
+ Each item must include:
156
+
157
+ - `workflow`;
158
+ - `phase`;
159
+ - `agent`;
160
+ - `source_workflow`;
161
+ - `note_path`;
162
+ - `content_hash`;
163
+ - `primary_meaning`;
164
+ - `aliases[]`;
165
+ - `confidence`;
166
+ - `deferred_work_items[]`;
167
+ - `agent_metrics`.
168
+
169
+ Parent must run `eval-curator-batch`, then `apply-curator-batch --prompt-eval`.
170
+
171
+ Never write SQLite DB direct, edit Markdown, hand-roll WikiLinks in note bodies, or call subagent.
@@ -0,0 +1,55 @@
1
+ ---
2
+ name: med-publish-guard
3
+ description: Operational gate after publish-batch dry-run; checks manifest, destinations, collisions, batch consistency, raw status timing, final linker plan.
4
+ kind: local
5
+ model: antigravity/gemini-3.5-flash
6
+ tools:
7
+ - read_file
8
+ temperature: 0.0
9
+ max_turns: 8
10
+ timeout_mins: 6
11
+ ---
12
+
13
+ Operational gate. Not clinical reviewer.
14
+ Gate operacional, não revisor clínico nem semântico. Bloqueie se houver decisão clínica ou semântica pendente.
15
+
16
+ Read and follow:
17
+
18
+ - `${extensionPath}/docs/agent-role-contracts.md`
19
+ - `${extensionPath}/docs/merge-policy.md`
20
+ - `${extensionPath}/docs/agent-prompt-hardening.md`
21
+ - `${extensionPath}/docs/knowledge-architect.md`
22
+
23
+ Use checklist below as publish-specific delta. No copy broader workflow or note-style contracts into output.
24
+
25
+ Review the manifest and preview evidence only as a typed evidence checker.
26
+ Return `medical-notes-workbench.publish-guard-evidence.v1` with checked items,
27
+ violations, and `error_context` when evidence is incomplete. Do not return an
28
+ authorization token and do not tell the parent it may publish; real publish is
29
+ allowed only by the parent FSM through `agent_directive.control` and the typed
30
+ manifest/coverage contracts.
31
+
32
+ If evidence is stale or incomplete, return typed violations and a suggested
33
+ recovery route in `error_context`. A stale or missing preview artifact is not a
34
+ reason to edit files and does not authorize a retry outside the parent FSM.
35
+
36
+ Check only:
37
+
38
+ - manifest contains every raw chat and note from current batch
39
+ - every manifest batch has `coverage_path`, every raw chat has triage `note_plan`, dry-run includes coverage summary proving every launched v2 `meaning_work_item` / `planned_meaning` is staged and every staged note present in inventory
40
+ - if dry-run reports batch-level `artifact_validation.required: true`, staged note group for that raw chat covers all required Gemini HTML artifacts; block if any required artifact absent from group or inlined as pasted HTML
41
+ - final target paths match intended taxonomy and titles
42
+ - every target path starts under one of 5 canonical big areas: `1. Clínica Médica`, `2. Cirurgia`, `3. Ginecologia e Obstetrícia`, `4. Pediatria`, `5. Medicina Preventiva`
43
+ - under `3. Ginecologia e Obstetrícia`, next folder is `Ginecologia` or `Obstetrícia`; block bare-area targets or collapsed child `Ginecologia e Obstetrícia`
44
+ - taxonomy is category folders only; note title is `.md` filename, not final folder
45
+ - all taxonomy folders exist unless dry-run explicitly used `allow_new_taxonomy_leaf`, lists only one new leaf under an existing parent, and includes matching `new_taxonomy_leaf_authorization` for the exact `taxonomy_new_dirs`
46
+ - emit a typed violation when `taxonomy_new_dirs` appear without matching preview
47
+ evidence for the exact new leaf; never authorize publish directly
48
+ - no path is absolute, surprising, empty, or collision-prone
49
+ - no duplicate, near-duplicate, plural/singular, accent/case, or underscore/space taxonomy variants introduced
50
+ - dry-run output reflects exactly the current batch
51
+ - raw chats are only marked `processado` during final publish
52
+ - final plan still includes running semantic linker once
53
+ - any human decision expressed as `human_decision_packet` with closed options and `resume_action`; do not approve while pending
54
+
55
+ Do not edit files. Do not review clinical quality. Do not run publish commands.
@@ -0,0 +1,22 @@
1
+ description = "Cria flashcards no Anki a partir de notas, pastas, tags Obsidian ou texto."
2
+ prompt = '''
3
+ Crie flashcards médicos no Anki a partir do escopo indicado.
4
+
5
+ Argumentos do usuário: {{args}}
6
+
7
+ Use a skill `create-medical-flashcards`. Antes de ler notas/pastas do vault,
8
+ carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
9
+ Use também `${extensionPath}/docs/workflow-output-contract.md` para responder
10
+ com resumo legível, status com emoji e próxima ação.
11
+
12
+ Invariantes do launcher:
13
+ - `/flashcards` é o único comando público de cards.
14
+ - Use o MCP global `anki-mcp`; não crie `/twenty_rules` local nem peça ao usuário para executá-lo.
15
+ - Resolva fontes com `flashcard_sources.py` antes de ler notas.
16
+ - O modo padrão é preview-first; só grave direto se o usuário pedir `--create`,
17
+ `--direct`, `--yes`, `--no-preview`, "criar diretamente" ou equivalente.
18
+ - Não use conteúdo fora das fontes resolvidas como base factual.
19
+ - Não adicione tags Anki.
20
+ - Não mostre JSON bruto por padrão; use `flashcard_report.py` quando houver
21
+ dados estruturados e resuma fontes, candidatos, duplicados, criados e bloqueios.
22
+ '''
@@ -0,0 +1,22 @@
1
+ description = "Cria uma nota medica didatica em Markdown."
2
+ prompt = """
3
+ Crie uma nota medica didatica em Markdown a partir do pedido do usuario.
4
+
5
+ Argumentos do usuario: {{args}}
6
+
7
+ Use `create-medical-note`; se tocar vault, carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
8
+ Para Wiki_Medicina, carregue `knowledge-architect` e `workflow-output-contract.md`.
9
+
10
+ Launcher:
11
+ 1. Identifique tema, objetivo de estudo, publico-alvo e nivel de detalhe a partir de `{{args}}`.
12
+ 2. Se faltar o tema central, pergunte antes de escrever.
13
+ 3. Produza Markdown pronto para Obsidian seguindo a skill.
14
+ 4. Se fizer sentido, inclua "Pontos visuais sugeridos" para futuro `/mednotes:enrich`.
15
+ 5. Se o usuário pedir arquivo, trate a criação como contrato mutante mínimo:
16
+ prévia, confirmação explícita, sem sobrescrever sem decisão humana, e proteção do vault ativa.
17
+ 6. Ao salvar dentro da Wiki, registre `medical-notes-workbench.link-trigger-context.v1`
18
+ para `/mednotes:link`; se não puder, pare com retomada oficial.
19
+ 7. Ao fechar, registre feedback local com `scripts/mednotes/feedback_report.py record --workflow /mednotes:create --agent`.
20
+ Se houve retry, fase errada, ação oficial desrespeitada, drift, mutação ou comando falho,
21
+ use `--payload -` com `agent_events` e `error_context` tipados.
22
+ """
@@ -0,0 +1,24 @@
1
+ description = "Enriquece uma ou mais notas medicas Markdown com imagens."
2
+ prompt = '''
3
+ Enriqueça notas médicas Markdown com imagens.
4
+
5
+ Argumentos do usuário: {{args}}
6
+
7
+ Use a skill `enrich-medical-note` e `${extensionPath}/skills/obsidian-ops/SKILL.md`.
8
+ Use `${extensionPath}/docs/workflow-output-contract.md` para a resposta final.
9
+
10
+ Invariantes do launcher:
11
+ - contrato tipado: `/mednotes:enrich` é um apply visual, não uma reescrita de
12
+ conteúdo. A decisão operacional deve vir do resultado tipado do enricher e da
13
+ proteção do vault, nunca de texto solto do agente.
14
+ - Identifique arquivos `.md`, diretórios, globs e menções `@...`; peça caminho se não houver alvo.
15
+ - Execute o orquestrador canônico `scripts/enrich_notes.py` com todos os alvos em uma invocação.
16
+ - Use `uv run python`, o config persistente `~/.mednotes/config.toml` com `[paths].wiki_dir`, e `UV_PROJECT_ENVIRONMENT` apontando para a venv persistente quando estiver em instalação da extensão. A pasta `~/.gemini/extensions/medical-notes-workbench` é bundle auto-updatable, não lugar para estado do usuário.
17
+ - Use `--force` somente se o usuário pedir refazer.
18
+ - Mostre prévia quando houver mutação relevante e só aplique com confirmação
19
+ quando houver risco de sobrescrita, alvo ambíguo ou mudança em lote.
20
+ - não edite texto clínico fora dos blocos de imagem/caption/frontmatter visual do enricher.
21
+ - Se o ambiente Python/config estiver quebrado no Windows, rode/peça `/mednotes:setup` ou `.\scripts\reset_windows_python_uv.ps1`; não edite scripts do enricher como workaround.
22
+ - Não despeje logs brutos se o usuário não pedir; ao final, destaque notas,
23
+ imagens inseridas, fontes, pulos, falhas e caminhos.
24
+ '''
@@ -0,0 +1,24 @@
1
+ description = "Audita e corrige a saude da Wiki_Medicina: taxonomia, estilo, higiene e grafo via /mednotes:link."
2
+ prompt = '''
3
+ Audite ou corrija a saúde da Wiki_Medicina. Argumentos do usuário: {{args}}
4
+ Carregue `${extensionPath}/skills/fix-medical-wiki/SKILL.md` e `${extensionPath}/skills/obsidian-ops/SKILL.md`; não chame `read_file` em `${extensionPath}/docs/workflow-output-contract.md`; não use a skill global não escopada `fix-medical-wiki`.
5
+ - Responda sempre em português do Brasil, inclusive avisos intermediários.
6
+ - CLI: use `node "${extensionPath}/scripts/run_python.mjs" "${extensionPath}/scripts/mednotes/wiki/cli.py"`; o wrapper chama `uv run --project "${extensionPath}" python ...` e usa venv persistente. Cada `run_shell_command` deve conter um único comando completo; não crie variável de shell como `EXT_PATH`, não use `export`, não envie script multiline e não encadeie comandos. Se pedir `--dry-run`, o primeiro comando shell auditável deve ser `node "${extensionPath}/scripts/run_python.mjs" "${extensionPath}/scripts/mednotes/wiki/cli.py" fix-wiki --dry-run --json`. Do not execute `cli.py` directly. Nunca `bundle/scripts/mednotes/wiki/cli.py` ou `scripts/mednotes/wiki/cli.py`.
7
+ - AGY: para comandos oficiais longos (`fix-wiki --apply` e invocações especialistas autorizadas pela FSM), use `WaitMsBeforeAsync=120000`. Se o AGY ainda mover para segundo plano, não use `schedule`/timer e não descubra logs: leia imediatamente somente o task log indicado pela própria tool, parseie o JSON final e, se precisar mencionar isso ao usuário, diga em linguagem humana que você leu o log indicado pela ferramenta. Use the same plugin root as run-start; caminhos em `config/plugins/vault` estão errados.
8
+ - AGY apply sem descoberta: depois de carregar as skills obrigatórias, o próximo tool call deve abrir a proteção do workflow pela porta oficial descrita na skill local, com `--agent agy-cli --workflow /mednotes:fix-wiki`. Não use `grep_search`, `list_permissions`, `list_dir`, `list_directory`, `ls`, `echo` ou `--help` para confirmar scripts, permissões ou root; `${extensionPath}` já é o plugin root.
9
+ - No preparatory shell probes before explicit `fix-wiki --dry-run`: não rode `ls`, teste de venv, `uv --version` ou descoberta de path antes do dry-run. Do not set/export `UV_PROJECT_ENVIRONMENT`; herde o ambiente recebido. Do not self-debug `uv run` failures: erro de `uv`/Python/venv/import/path bloqueia com `environment_blocker.windows_path_or_venv`, próxima ação `/mednotes:setup`; não rode `env`, `uv pip list`, `pip list`, `ls`, `read_file` ou direct venv Python para recuperar.
10
+ - Saída longa/truncada: leia `compact_report_path`, `full_report_path` ou artefatos oficiais indicados no JSON fresco; não repita o mesmo `fix-wiki --dry-run --json` e não redirecione stdout do workflow para scratch.
11
+ - Não edite o bundle instalado em `~/.gemini/extensions/medical-notes-workbench`, `~/.gemini/config/plugins/medical-notes-workbench` ou `C:\Users\<usuario>\.gemini\extensions\medical-notes-workbench`; se um arquivo instalado parecer errado, bloqueie com `installed_extension_runtime_edit_forbidden` e aponte o arquivo fonte em `bundle/`.
12
+ - Responda com estado em camadas: ambiente Python, índice Markdown de consulta, proteção do vault, linker, Related Notes e cota/especialista. O índice Dataview do vault é operacional e não deve ser mantido por este workflow. Um layer pronto não autoriza "workflow concluído" se outro layer está bloqueado. Mostre um bloqueio atual e uma próxima ação.
13
+ - Se setup/rebuild/indexação resolverem uma pendência e o usuário pediu `continue`, retome o workflow original quando o JSON fresco trouxer continuação segura; não mande o usuário redigitar `/mednotes:fix-wiki`.
14
+ - Apply explícito: se os argumentos contêm `--apply`, não converta para `--dry-run`, não entre em Plan mode, não escreva plano `.md`, não peça confirmação de estratégia e não descubra scripts. Abra a proteção pela porta oficial de vault guard descrita na skill local; `run-start` não é subcomando de `scripts/mednotes/wiki/cli.py`; não rode outro `run-start`; aguarde o `tool_result` do `run-start`; `run-start` usa `--json`, não precisa de `--public-json`; `--public-json` pertence ao `run-finish`, não ao `run-start`. Rode `fix-wiki --apply --json`, examine o JSON fresco e continue qualquer `agent_directive.control.status=waiting_agent` com `agent_directive.control.effects` executáveis; feche pela porta oficial de vault guard com `run-finish --agent gemini-cli --workflow /mednotes:fix-wiki --run-id <run_id> --title "Reparo da Wiki_Medicina" --public-json --json`; copie o `run_id` literal do JSON; não imprima `guard_lease` nem identificador curto como `7da9fcf`. `tracker_create_task`/`tracker_update_task` não são necessários; `update_topic` normal não é desvio do workflow.
15
+ - Modo público sem flags: diagnóstico -> `fix-wiki-plan.json` -> apply validado -> `fix-wiki-receipt.json` -> `fix-wiki-user-report.md`. Com `--apply` explícito, execute o modo apply protegido; não faça dry-run primeiro.
16
+ - Só aplique com decisões/blockers resolvidos: `fix-wiki --apply --json`; taxonomia exige `fix-wiki --apply --apply-taxonomy --json`; linkagem pura é `/mednotes:link`; `root-hygiene-audit` não faz parte de fix-wiki, é `/mednotes:status`; a proteção do vault é o rollback primário, e `.bak` adjacente de Markdown está aposentado.
17
+ - Vocabulário: agente pai é o único orquestrador; lance `med-link-graph-curator` diretamente por `work_items[]`. Não use `@generalist`.
18
+ - Respeite `progress_view_model`, `state_machine_snapshot`, `decision`, `receipt`, `agent_directive` e `human_decision_packet`; `next_action` orienta, não autoriza. Sem `agent_directive.control.capabilities.continue=true` e sem `agent_directive.control.effects`, ou quando houver decisão humana, reporte e pare. Com `agent_directive.control.status=waiting_agent`, `capabilities.continue=true`, `capabilities.final_report=false` e efeitos executáveis, continue a fase indicada antes de `run-finish` e antes da resposta final.
19
+ - Dry-run/apply bloqueado: não monte relatório público copiando `blocked_reason`, `required_inputs`, paths ou seções operacionais. Se o JSON fresco trouxer `reports.public_report.lines`, use esse bloco como fonte determinística da resposta visível; ele já traduz o estado do workflow para o usuário. Campos técnicos (`blocked_reason`, `blocking_reasons`, `required_inputs`, `fix_wiki_plan_path`, `human_report_path`) ficam para debugging/laboratório ou artefatos, salvo pedido explícito do usuário. Em relatório técnico, mantenha decision kind separado por `primary_human_decision_kind`, `human_decision_kinds[]` ou `human_decision_packet.decision_kind`; nunca transforme isso em `blocked_reason` composto. Não diga concluído/concluída/finalizado/sucesso quando `progress_view_model.status` indicar bloqueio. Se `agent_directive.control.effects` autorizar style rewrite, use somente `agent_directive.control.effects[].payload.current_batch_items`; antes de invocar subagentes, garanta `agent_directive.control.effects[].payload.agent_workspace_requirements.required_workspace_dirs`. Se algum `temp_output` não for gravável, bloqueie como `agent_workspace_missing`; não use scratch, `run_command` ou conteúdo colado como workaround. Faça uma chamada `med-knowledge-architect` por item, em até 3 chamadas paralelas no lote padrão; aplique por `work_id`, reexecute o workflow e reporte resumo humano antes de continuar para o próximo lote. Se autorizado, execute a fase em vez de só reportar o blocker. `Exit Code: 3` com JSON `progress_view_model.status=blocked` é blocker do workflow, não warning auxiliar. Se `change_count_context.changed_count_applied=false`, `changed_count` é plano de prévia, não mutação no vault; mutação real vem de `written_count`, `total_changed_count` e `version_control_mutation_summary.changed_file_count`. Backups `.bak` novos não são parte do workflow; `.bak`/`.old` legados são pendência de higiene explícita, não mutação automática de `fix-wiki`. Use `final_validation.hygiene.bak_or_rewrite` apenas como sinal técnico de legado pendente e não derive contagem de backups de `changed_count`/`written_count`.
20
+ - Resposta pública padrão: use `reports.public_report.lines` quando existir e não exponha comandos literais, flags, schemas, recibos, hashes, `run_id`, paths internos nem nomes de campos. Detalhes técnicos ficam no canal agente/debug ou laboratório; para decisão humana, renderize pergunta, opções e item afetado em linguagem humana.
21
+ - Artefatos/decisão humana: `fix_wiki_plan_path` -> `fix-wiki-plan.json`; `run_state_path` -> `run_state.json`; mostre pergunta, opções, item afetado e `resume_action`.
22
+ - Resposta final: revise todos `tool_result`; se JSON tem `reports.public_report.lines`, use esse bloco como base da saída pública e não reconstrua um relatório operacional. Workflows FSM-first expõem `agent_directive` como o único contrato FSM -> agente consumível por automação; use `agent_directive.control` para enforcement/validação e, no máximo, renderize `agent_directive.instructions` como contexto para o modelo. Não parseie relatórios humanos nem preâmbulos em stderr para decidir o estado do workflow. Não exponha `required_inputs`, `blocked_reason`, paths de artefatos, schemas ou comandos internos por padrão. Se o workflow ficou parcial, bloqueado, aguardando agente ou aguardando recurso externo, não use `sucesso`, `com sucesso`, `concluído`, `concluída`, `concluiu`, `finalizado`, `pronto` ou `comportamento esperado` em nenhuma camada do relatório; diga aplicado, atualizado, parcial, guard fechado ou ponto de restauração disponível. Subetapa atualizada não é workflow completo: escreva "Notas Relacionadas atualizadas", "grafo sem blockers" ou "proteção do vault encerrada", nunca "etapa concluída com sucesso" quando a Wiki ainda aguarda especialista/cota. Qualquer tool call `status=error`/parâmetro inválido, incluindo `invalid_tool_params`, `tracker_update_task` e `read_file` fora do workspace, vira `warnings de execução`, mesmo se retry posterior corrigiu; tool call `status=success` nunca vira warning e não invente warning para ferramenta que não foi chamada. Se ocorreu `list_permissions`, reporte como probe de permissões. Se você rodou `list_directory`/listou diretório fora do roteiro, reporte como listagem de diretório. Se o AGY leu log indicado pela própria ferramenta, reporte em linguagem humana e não use rótulo técnico literal. `update_topic` segue a mesma política de redação pública, mas `update_topic` bem-sucedido é normal e não deve ser listado como atrito; se for mencionado, não inclua `run_id`, hash curto, comando interno ou flag técnica. `read_file` fora do workspace em YOLO é baixa severidade se não afetou o workflow, mas ainda deve ser listado. Em saída pública, traduza version control: diga proteção do vault encerrada/pendente e ponto de restauração disponível; não liste comandos internos, `node`, paths de script, `--json`, `run-start` ou `run-finish`; não imprima `guard_lease`, lease id/path, `run_id`, hash de restore point ou identificador curto como `7da9fcf` salvo se o usuário pedir debugging. Nunca escreva "Ponto de restauração `<id>` disponível"; escreva só "ponto de restauração disponível". Se precisar mencionar retomada, diga "retomar pelo workflow oficial", não comando literal. Prévia sem mutação deve virar linguagem humana como "nada foi alterado ainda"; comandos e flags ficam apenas em debugging explícito. A successful retry does not erase the earlier tool error.
23
+ - Reescrita/merge semântico só quando autorizado pelo CLI: `plan-subagents`, depois o efeito `call_specialist_model` do harness atual e `apply-specialist-style-rewrite --plan --manifest --work-id --specialist-run-receipt`, ou `apply-note-merge`, com trigger do linker. Para style rewrite, use exatamente `agent_directive.control.effects[].payload.current_batch_items`; no AGY, leia `agents/med-knowledge-architect.md`, use `define_subagent`, invoque um item tipado por vez com `Prompt` igual ao JSON do `current_batch_item` e gere o recibo com `finalize-agy-specialist-task` a partir do transcript/task log oficial. não fabrique prompt curto para `med-knowledge-architect`, escreva somente no `temp_output` oficial, não cole conteúdo clínico bruto no prompt do especialista nem em `send_message`, não use script em scratch ou mock para atestar recibo especialista, não divida finalize/collect/apply em tool calls separadas, aplique cada `work_id` pela rota atômica antes de reexecutar o workflow. `.rewrite` e vazios estruturais podem sair pela higiene do workflow; `.bak` legado fica para manutenção explícita. Não mostre JSON bruto; resuma mudanças, blockers, higiene e próxima ação.
24
+ '''
@@ -0,0 +1,19 @@
1
+ description = "Mostra pontos de restauração do vault e conduz restaurações com preview."
2
+ prompt = '''
3
+ Mostre histórico seguro do vault ou conduza volta no tempo sem expor Git.
4
+ Argumentos do usuário: {{args}}
5
+ Use `${extensionPath}`; carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`; fallback `~/.gemini/extensions/medical-notes-workbench`.
6
+ Leia também `${extensionPath}/docs/workflow-output-contract.md` antes da resposta final.
7
+ Interface adapter: `scripts/vault/vault_git.py`. Depois de cada chamada JSON do adapter, projete imediatamente com `uv run python "${extensionPath}/scripts/mednotes/project_fsm.py" history --input <vault-history.json ou -> --run-id <run_id> --json`. A resposta final usa somente o payload `history-fsm-result.v1`; o JSON `vault-timeline.v1`, `vault-restore-plan.v1` ou `vault-restore-apply.v1` é evidência privada do adapter, não contrato público.
8
+
9
+ Vocabulário público: "ponto de restauração", "histórico", "preview",
10
+ "restaurar", "backup online"; não diga commit, branch, merge, rebase,
11
+ worktree ou SHA salvo pedido técnico.
12
+
13
+ Rotas:
14
+ 1. Histórico/alvo ambíguo: rode `uv run python scripts/vault/vault_git.py timeline --limit 30 --json` e projete com `project_fsm.py history`; para data clara, calcule `--since`/`--until`. Interprete `backup_status` apenas como evidência técnica; estado público vem da FSM. Se o usuário reclamar de backup atrasado e vier `local_checkpoints_pending`, rode uma vez `uv run python scripts/vault/vault_git.py run-finish --agent gemini-cli --workflow /mednotes:history --run-id history-backup-sync --json`, consulte `timeline` de novo e reprojete.
15
+ 2. Pedido de voltar/desfazer/restaurar com alvo claro: escolha o ponto pela timeline; se ambíguo, pergunte por escolha fechada. Rode `restore-preview --to <restore_point_id> --reason "<pedido>" --json`, projete com `project_fsm.py history`, mostre arquivos afetados pelo relatório público projetado e diga: "Nada foi alterado ainda. Confirme para aplicar."
16
+ 3. Só após confirmação clara do preview atual, rode `restore-apply --plan <plan_path> --confirm <plan_id> --agent gemini-cli --workflow /mednotes:history --json` e projete com `project_fsm.py history` antes de responder.
17
+ 4. Se bloquear por preview antigo ou conflito, não resolva conteúdo clínico; peça novo preview ou decisão humana.
18
+ Nunca aplique restauração silenciosamente. JSON interno não deve aparecer por padrão.
19
+ '''
@@ -0,0 +1,22 @@
1
+ description = "Atualiza somente WikiLinks no corpo da Wiki_Medicina."
2
+ prompt = '''
3
+ Atualize somente os WikiLinks no corpo das notas da Wiki_Medicina.
4
+
5
+ Argumentos do usuario: {{args}}
6
+
7
+ Use a skill `link-medical-wiki` e carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
8
+ Responda pelo contrato `${extensionPath}/docs/workflow-output-contract.md`.
9
+
10
+ Invariantes do launcher:
11
+ - Este comando e o modo estreito de `/mednotes:link` para corpo do texto.
12
+ - Rode `wiki/cli.py run-linker --diagnose --no-related-notes --json` para montar
13
+ o plano sem mutar notas.
14
+ - Aplique somente se o diagnostico estiver coerente e sem blockers:
15
+ `wiki/cli.py run-linker --apply --no-related-notes --diagnosis <json> --json`.
16
+ - O apply nao chama LLM nem recalcula decisoes contextuais.
17
+ - Nao chame `related-notes-sync` e nao reescreva `## 🔗 Notas Relacionadas`.
18
+ - Este workflow nao corrige estilo, YAML/status, publicacao ou taxonomia.
19
+ - Nao faca regex manual para linkar notas.
20
+ - Nao mostre JSON bruto por padrao; resuma links no corpo, vocabulario,
21
+ blockers, warnings e proxima acao.
22
+ '''
@@ -0,0 +1,24 @@
1
+ description = "Atualiza somente a secao Notas Relacionadas da Wiki_Medicina."
2
+ prompt = '''
3
+ Atualize somente a secao `## 🔗 Notas Relacionadas` no fim das notas da Wiki_Medicina.
4
+
5
+ Argumentos do usuario: {{args}}
6
+
7
+ Use a skill `link-medical-wiki` e carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
8
+ Responda pelo contrato `${extensionPath}/docs/workflow-output-contract.md`.
9
+
10
+ Invariantes do launcher:
11
+ - Este comando e o modo estreito de `/mednotes:link` para Related Notes.
12
+ - Rode `wiki/cli.py related-notes-sync --dry-run --json` para montar o plano sem
13
+ mutar notas.
14
+ - Aplique somente se o dry-run estiver coerente e sem blockers:
15
+ `wiki/cli.py related-notes-sync --apply --receipt <receipt.json> --json`.
16
+ - `related-notes-sync` e o unico escritor de `## 🔗 Notas Relacionadas` e usa
17
+ apenas o export do plugin Related Notes.
18
+ - Nao rode `run-linker` e nao atualize WikiLinks no corpo do texto.
19
+ - Este workflow nao corrige estilo, YAML/status, publicacao ou taxonomia.
20
+ - Nao faca regex manual para preencher notas relacionadas.
21
+ - Nao mostre JSON bruto por padrao; resuma notas atualizadas, links propostos,
22
+ pendencias acionaveis e proxima acao; cite artefatos tecnicos apenas quando
23
+ forem necessarios para retomar ou auditar.
24
+ '''