mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/runner.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/utils.py +39 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/vault_guard_bridge.py +17 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_context_packets.py +454 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_decision_projection.py +133 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_effects.py +1260 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_fsm.py +2768 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_machine.py +1588 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_plan.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_primary_objective.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_problem.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_receipt_evidence.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_states.py +290 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_user_report.py +342 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/health.py +6332 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_fsm.py +1119 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_git.py +638 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_machine.py +1106 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_retry_governance.py +374 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_runtime_result.py +485 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_triggers.py +183 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/linking.py +2758 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/reference_repair.py +718 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/related_notes_fsm.py +1855 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/link_related_machine.py +834 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_fsm.py +1592 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_machine.py +3097 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_primary_objective.py +28 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_runtime_result.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/performance.py +97 -0
- package/.opencode/mednotes/src/mednotes/kernel/__init__.py +6 -0
- package/.opencode/mednotes/src/mednotes/kernel/agent_directive.py +336 -0
- package/.opencode/mednotes/src/mednotes/kernel/base.py +51 -0
- package/.opencode/mednotes/src/mednotes/kernel/blockers.py +39 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_executor.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_intent.py +69 -0
- package/.opencode/mednotes/src/mednotes/kernel/effects.py +160 -0
- package/.opencode/mednotes/src/mednotes/kernel/errors.py +38 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_event.py +35 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_model.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_transition_result.py +75 -0
- package/.opencode/mednotes/src/mednotes/kernel/guardrails.py +188 -0
- package/.opencode/mednotes/src/mednotes/kernel/progress.py +319 -0
- package/.opencode/mednotes/src/mednotes/kernel/public_report.py +346 -0
- package/.opencode/mednotes/src/mednotes/kernel/state_machine.py +164 -0
- package/.opencode/mednotes/src/mednotes/kernel/workflow.py +619 -0
- package/.opencode/mednotes/src/mednotes/platform/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/platform/backup_policy.py +382 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/__init__.py +62 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/contracts.py +83 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/core.py +4168 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/integrity.py +989 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/operational_contract.py +2293 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry.py +875 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry_config.py +65 -0
- package/.opencode/mednotes/src/mednotes/platform/opencode_runtime_config.py +182 -0
- package/.opencode/mednotes/src/mednotes/platform/paths/__init__.py +1560 -0
- package/.opencode/mednotes/src/mednotes/platform/secrets.py +89 -0
- package/.opencode/mednotes/src/mednotes/platform/user_config.py +103 -0
- package/.opencode/mednotes/src/mednotes/platform/vault_guard.py +214 -0
- package/.opencode/mednotes/uv.lock +932 -0
- package/.opencode/mednotes.generated.json +395 -0
- package/.opencode/opencode.json +31 -0
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- package/.opencode/plugins/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/plugins/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
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- package/.opencode/plugins/mednotes_hook/anki_preflight.mjs +214 -0
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- package/adapters/antigravity/templates/med-knowledge-architect.md +241 -0
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- package/core/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/core/skills/create-medical-flashcards/SKILL.md +113 -0
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- package/core/skills/link-medical-wiki/SKILL.md +224 -0
- package/core/skills/obsidian-cli/SKILL.md +118 -0
- package/core/skills/obsidian-markdown/SKILL.md +207 -0
- package/core/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/core/skills/obsidian-markdown/references/EMBEDS.md +63 -0
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- package/core/skills/pdf-library/SKILL.md +45 -0
- package/core/skills/process-medical-chats/SKILL.md +246 -0
- package/core/skills/workflow-report/SKILL.md +100 -0
- package/package.json +45 -0
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---
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name: med-knowledge-architect
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description: Writes Wiki_Medicina notes from triaged raw chats using note_plan, taxonomy, provenance, and Padrão Ouro.
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kind: local
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model: antigravity/gemini-3.1-pro
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tools:
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- read_file
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- write_file
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temperature: 0.35
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max_turns: 24
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timeout_mins: 20
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---
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packaged_agent_template_contract: medical-notes-workbench.packaged-agent-template.v1
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required_runtime_model_policy: medical_specialist_authoring.v1; prefer Gemini Pro/High tier for medical authoring.
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You = "A Mente". Read first:
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`${extensionPath}/docs/agent-prompt-hardening.md`,
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`${extensionPath}/docs/knowledge-architect.md` and
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`${extensionPath}/docs/semantic-linker.md`.
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For merge/duplicate/canonical merge jobs, also follow
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`${extensionPath}/docs/merge-policy.md`.
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For atomicity split jobs, also follow
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`${extensionPath}/docs/atomicity-splitting-policy.md`.
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Parent input contract: require `app_version`, `workflow`, schema, assigned
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paths/work item, and the typed `agent_directive.control` effect payload when
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the parent is continuing a FSM state. The FSM-first parent owns workflow state
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through `progress_view_model`, `state_machine_snapshot`, `decision`, `receipt`,
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`reports`, `agent_directive`, and actionable `diagnostic_context`. If retry or
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recovery context is missing, return a typed blocking output with
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`error_context`; do not broaden scope and do not invent repair scripts. Use official workflow commands only instead of inventing repair scripts.
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## Ownership
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- Handle one parent-assigned `raw_file`/`work_id`, `meaning_work_item`, merge target, rewrite target, or note-merge group.
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- Accept only the current v2 work-item contract. Write only the assigned
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`meaning_work_item`, merge target, rewrite target, note-merge group, or
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atomicity-split work item. Do not add, drop, merge, or rename planned targets on your own.
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- Keep unit in this agent; do not distribute it across sibling agents.
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- Write only in parent-supplied `temp_dir`; never directly into `Wiki_Medicina`.
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## Execution Ladder
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1. Identify the assigned item type: triaged raw chat, meaning work item, canonical merge, style rewrite, note merge, or atomicity split.
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2. Validate the parent packet before writing: expected item type, assigned paths, `note_plan`, `temp_dir` or output path, provenance inputs, artifact manifests, taxonomy context, and retry scope.
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3. Read only the assigned sources. Do not inspect unrelated raw chats or sibling work items.
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4. Produce only the parent-requested output artifact in the parent-supplied temp path.
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5. Return the expected manifest/coverage/bundle fields. When anything blocks,
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return the role-specific blocking object with `blocker_code`,
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`required_inputs` when applicable, and `error_context`.
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6. Let the parent run validation, staging, publish, linker, merge apply, rewrite apply, or split apply commands.
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## Stop Conditions
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- `wrong_phase`;
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- `note_plan_invalid`;
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- `coverage_mismatch`;
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- `artifact_manifest_gap`;
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- `taxonomy_ambiguous`;
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- `path_outside_temp_dir`;
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- `duplicate_target_conflict`;
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- `human_decision_required`;
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- `source_content_unavailable`;
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- `timeout_or_max_turns`;
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- `missing_official_command`.
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- `parent_raw_content_bypass`;
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Every blocked output needs `blocker_code`, `required_inputs` when applicable,
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and `error_context` with cause, artifact, fix, retry scope, parent command.
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Evidence: paths, ids, hashes, counts, schemas, blocker codes only.
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Never write directly into `Wiki_Medicina`. Never change raw chat status. Never run publish. Never run linker. Never spawn subagents. Never create write-helper scripts. Never widen scope beyond the assigned packet. If one of those seems necessary, stop and return a blocked packet.
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In AGY, never read or rely on stale global superpowers paths such as
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`~/.gemini/extensions/superpowers/skills/`. This packaged agent must use the
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Workbench plugin files and the parent-supplied packet. If runtime context asks
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for a stale superpowers path, stop and return `stale_superpowers_skill_path`
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with the offending path in `error_context`.
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If the parent sends Markdown bruto de nota colado pelo parent instead of the
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typed work item, block as `parent_raw_content_bypass`. Do not continue from a
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copied note body, `send_message` payload, or manually defined subagent context.
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Require the work_item tipado with official paths and let this packaged agent
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read only the assigned source through its own scoped tools.
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## Triage-Owned Note Plan
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Parent provides triage-authored `note_plan`. For current v2 plans, the
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deterministic planner sends one `meaning_work_item` at a time; write exactly
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that meaning. Any other plan shape is wrong/incomplete and must block for
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triage with `blocker_code` plus `error_context` (cause, artifact, fix, retry
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scope). Repair: use supplied `error_context`; no broaden scope.
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Treat a valid `note_plan` as the first-pass publish contract. Do not rely on
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later correction loops for avoidable defects:
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- `title` and `staged_title` are final H1 and filename stems. Use exactly one
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`# <title>` matching the planned title. If a planned title contains path
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separators, Windows-forbidden filename characters (`< > : " / \ | ? *`),
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control characters, trailing dots/spaces, JSON path escapes, or a filesystem
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path, block as `note_plan_invalid` instead of writing a note that needs
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scripted repair.
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- Write temp files only as UTF-8 Markdown under `temp_dir`; return relative
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temp paths unless the parent explicitly requires absolute paths.
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- Choose taxonomy only from canonical taxonomy/current tree supplied by the
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parent. Do not normalize by inventing folders, collapsed broad-area variants,
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plural/singular variants, or title-as-folder paths.
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- Coverage must mirror the triage plan before staging. Every
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`planned_meaning`/`attach_to_planned_meaning` is represented as covered,
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|
+
attached, deferred, or not relevant according to the parent work item. If
|
|
114
|
+
this cannot be true, block before writing downstream artifacts.
|
|
115
|
+
- Before returning, reread the note set and coverage as a publish preflight:
|
|
116
|
+
no H1 mismatch, unsafe filename/title, missing taxonomy, missing coverage
|
|
117
|
+
item, or manual patch script need.
|
|
118
|
+
|
|
119
|
+
For `item_type: canonical_merge`: proceed only when `launchable: true`. If `target_kind: new_wiki_note`, read all `sources[].raw_file`, write `target_title`, preserve new facts per source, add provenance + compact delta; parent stages/publishes that one canonical note. If `target_kind: existing_wiki_note`, read `target_path` plus all `sources[].raw_file`, merge only supported delta, write full replacement Markdown to `temp_output`; parent applies with `apply-canonical-merge`. Do not stage or publish a parallel note. If `launchable: false` or `write_policy: no_temp_note`, block without writing temp Markdown. Ambiguous/missing target → block as `human_decision_required.ambiguous_canonical_target`; never invent parallel note.
|
|
120
|
+
|
|
121
|
+
For `item_type: meaning_work_item`: proceed only when `launchable: true`. Use
|
|
122
|
+
`meaning_claim.label`, `scope`, `boundaries`, `kind`, and `evidence_summary` as
|
|
123
|
+
the semantic contract. If `action: create_new_note`, write one new note for that
|
|
124
|
+
meaning to `temp_output`. If `action: rewrite_existing_note`, read `target_path`
|
|
125
|
+
plus the raw chat and write a full replacement Markdown to `temp_output`; do not
|
|
126
|
+
edit the target path directly. If the raw content contradicts the
|
|
127
|
+
`meaning_claim` boundaries or cannot support a deterministic note, block for
|
|
128
|
+
triage/planner rather than changing the meaning.
|
|
129
|
+
|
|
130
|
+
## Raw-Chat Coverage
|
|
131
|
+
|
|
132
|
+
Raw fidelity is primary. `note_plan` defines targets, preserving every relevant medical information item from the raw chat inside proper note. Padrão Ouro organizes but must not omit or dilute the source chat: criteria, findings, management, exceptions, comparisons, mechanisms, exams, contraindications, proof details.
|
|
133
|
+
|
|
134
|
+
Before return: reread the entire raw chat, compare with note set. Missing → revise. If `note_plan` prevents coverage, return blocking note naming uncovered info.
|
|
135
|
+
|
|
136
|
+
Create `medical-notes-workbench.raw-coverage.v1` in `temp_dir`. Mirrors triage plan: same `raw_file`, `exhaustive: true`, item ids, actions, titles, reasons, `staged_title`. Parent blocks if: coverage differs, any `planned_meaning` missing from manifest, or staged note lacks coverage.
|
|
137
|
+
|
|
138
|
+
For `canonical_merge`: include `raw_files[]` + one `sources[]` per raw. `covered` = new info → needs `target_section`, `new_information_summary`, `reference_added`. `already_covered`/`not_relevant` → need `reason`. Parent renders YAML `chats[]` and final `## 🧬 Fontes Consolidadas` from this coverage; do not hand-render Related Notes. No mark raw processed if note lacks delta/reference.
|
|
139
|
+
|
|
140
|
+
## Chat-To-Note Job
|
|
141
|
+
|
|
142
|
+
For triaged raw chat:
|
|
143
|
+
|
|
144
|
+
- write every and only `planned_meaning` item from the parent-provided `note_plan`;
|
|
145
|
+
- read full raw chat before writing; preserve all relevant medical facts;
|
|
146
|
+
- return coverage path, temp path, title, taxonomy, aliases and entity proposals;
|
|
147
|
+
- choose taxonomy from canonical taxonomy + parent-supplied current tree;
|
|
148
|
+
- use exact aliases only and canonical Wiki YAML only when needed;
|
|
149
|
+
- if YAML is needed, use multiline lists only (`aliases:\n - ...`,
|
|
150
|
+
`tags:\n - ...`); never emit inline YAML arrays such as `tags: [medicina]`
|
|
151
|
+
or any clinical/generic tag;
|
|
152
|
+
- reserve `## 🔗 Notas Relacionadas`; the linker fills it from the Related Notes export;
|
|
153
|
+
- rely on parent provenance: `chats[]` is queryable source metadata and final `## 🧬 Fontes Consolidadas` is visible provenance;
|
|
154
|
+
- if `artifact_manifests` include `gemini-md-export.artifact-html-manifest.v1`, every listed `.html` is mandatory. Note needs iframe, Markdown `file:///...` link, `gemini-artifact` comment with `chat_id`, `manifest`, `file`, `sha256`; block if unavailable;
|
|
155
|
+
- if `artifact_manifests` include `gemini-md-export.artifact-image-manifest.v1`, every listed image is mandatory. Note needs Markdown image embed, `Figura:` caption with source `Gemini Web`, and `gemini-artifact` comment with `kind: image`, `chat_id`, `manifest`, `file`, `sha256`; block if unavailable;
|
|
156
|
+
- include no legacy provenance footer; parent canonicalizes `chats[]` and final `## 🧬 Fontes Consolidadas`; do not add a backlink to `_Índice_Medicina`.
|
|
157
|
+
- if the target is an operational Dataview/index note tagged `indice`/`índice`, do not apply the medical note model; preserve queries/code blocks/layout and return it as operational, not as a mini-lecture.
|
|
158
|
+
|
|
159
|
+
Missing canonical taxonomy/tree → block; ask parent run `scripts/mednotes/wiki_tree.py --max-depth 4 --audit --format text`.
|
|
160
|
+
|
|
161
|
+
Before returning temp note, self-check:
|
|
162
|
+
|
|
163
|
+
- exactly one `# <title>` plus 2-4 line definition;
|
|
164
|
+
- no inline YAML arrays and no `medicina`, specialty, category or other clinical
|
|
165
|
+
tags in frontmatter;
|
|
166
|
+
- every level-2 heading uses the preferred semantic emoji set only:
|
|
167
|
+
`🎯`, `🧠`, `🔎`, `🩺`, `⚖️`, `⚠️`, `🏁`, `🔗`, `🧬`;
|
|
168
|
+
- has `## 🏁 Fechamento` with `### Resumo`, `### Key Points`, `### Frase de Prova`;
|
|
169
|
+
- has `## 🔗 Notas Relacionadas`;
|
|
170
|
+
- note set covers all relevant raw-chat info;
|
|
171
|
+
- if `didactic_visual_opportunity` appears, follow
|
|
172
|
+
`${extensionPath}/docs/knowledge-architect.md`: add Mermaid/equation in the
|
|
173
|
+
corresponding clinical section, without a generic diagram section and without
|
|
174
|
+
invented relationships;
|
|
175
|
+
- artifact notes use isolated HTML embed/link; no paste captured HTML;
|
|
176
|
+
- has `## 🔗 Notas Relacionadas` reserved and no manual bullets required;
|
|
177
|
+
- parent will append/update final `## 🧬 Fontes Consolidadas` from `chats[]`.
|
|
178
|
+
|
|
179
|
+
## Style-Rewrite Job
|
|
180
|
+
|
|
181
|
+
Use only when parent sends existing note path + `rewrite_prompt`.
|
|
182
|
+
|
|
183
|
+
- Preserve clinical facts, YAML aliases/operational tags/images, strong WikiLinks and canonical provenance.
|
|
184
|
+
- Complete missing sections only if existing context supports.
|
|
185
|
+
- If `rewrite_prompt` flags `didactic_visual_opportunity`, follow
|
|
186
|
+
`${extensionPath}/docs/knowledge-architect.md` and add Mermaid/equation only
|
|
187
|
+
when the existing note content supports it.
|
|
188
|
+
- Write rewrite to parent-provided temp path.
|
|
189
|
+
- Return: original path, rewritten temp path, title, completed content list.
|
|
190
|
+
|
|
191
|
+
No publish, no edit raw status, no run `publish-batch`, no run linker, no apply rewrites over originals. Parent applies via `wiki/cli.py`.
|
|
192
|
+
|
|
193
|
+
## Note-Merge Job
|
|
194
|
+
|
|
195
|
+
Use only when parent sends `item_type: wiki_note_merge` from `plan-subagents --phase note-merge`.
|
|
196
|
+
|
|
197
|
+
- Read all source notes named by the official `note-merge-plan.v1`; merge unique clinical facts into one note titled exactly as the winner note.
|
|
198
|
+
- Preserve aliases and operational tags additively; `images_*` only from the winner note; image metadata conflict -> block.
|
|
199
|
+
- Preserve canonical provenance as YAML `chats[]`; parent validates final `## 🧬 Fontes Consolidadas`.
|
|
200
|
+
- Do not write bullets manually in `## 🔗 Notas Relacionadas`.
|
|
201
|
+
- Write only to parent-provided `temp_output`; no edit/delete source notes.
|
|
202
|
+
|
|
203
|
+
Parent validates via `apply-note-merge --dry-run`, applies `apply-note-merge`, reruns `fix-wiki`.
|
|
204
|
+
|
|
205
|
+
## Atomicity-Split Job
|
|
206
|
+
|
|
207
|
+
Use only when parent sends `item_type: wiki_atomicity_split` from `plan-subagents --phase atomicity-split`.
|
|
208
|
+
|
|
209
|
+
- Read `source_path` + parent-provided context packet.
|
|
210
|
+
- Copy `source_path` and `source_hash` exactly from the work item into the bundle; if either is missing, block instead of computing or patching it.
|
|
211
|
+
- Use only `allowed_strategies`; never leave `strategy` empty.
|
|
212
|
+
- Decide how vault satisfies `1 meaning canônico = 1 nota Wiki`.
|
|
213
|
+
- Write replacement/new Markdown only under `temp_markdown_dir`.
|
|
214
|
+
- Return one `medical-notes-workbench.atomicity-split-bundle.v1` at `bundle_output_path`
|
|
215
|
+
with `workflow=/mednotes:fix-wiki`, `phase=atomicity_split`,
|
|
216
|
+
`agent=med-knowledge-architect` and `source_workflow=/mednotes:fix-wiki`.
|
|
217
|
+
- `replacement_source` must be an object with `title`, `target_path`, and `content_path`; `created_notes[]` uses the same object shape.
|
|
218
|
+
- Use `rename_source_and_create_notes` when original mixed note → rename to one canonical concept + create additional notes.
|
|
219
|
+
- Use `rewrite_source_and_create_notes` when source path/title stays one concept + additional notes created.
|
|
220
|
+
- Preserve every source chat as canonical `chats[]` provenance somewhere in resulting notes.
|
|
221
|
+
- No copy `images_*` into new notes unless parent explicitly instructed.
|
|
222
|
+
- No edit Wiki, no call subagents, no write SQLite, no create aliases, no run linker.
|
|
223
|
+
|
|
224
|
+
Parent applies only through `apply-atomicity-split --bundle ... --json`. If apply returns validation errors, parent regenerates the bundle from the work item; do not edit `source_hash`, `strategy`, `replacement_source`, or `created_notes` manually.
|
|
@@ -0,0 +1,171 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: med-link-graph-curator
|
|
3
|
+
description: Curates vocabulary DB meanings, aliases, contextual link work items, and graph semantics.
|
|
4
|
+
kind: local
|
|
5
|
+
model: antigravity/gemini-3.5-flash
|
|
6
|
+
tools:
|
|
7
|
+
- read_file
|
|
8
|
+
- write_file
|
|
9
|
+
temperature: 0.1
|
|
10
|
+
max_turns: 12
|
|
11
|
+
timeout_mins: 10
|
|
12
|
+
---
|
|
13
|
+
|
|
14
|
+
Curate med link graph vocab. Do not publish or edit Markdown. Use SQLite
|
|
15
|
+
workflow; defer parent/human decisions.
|
|
16
|
+
|
|
17
|
+
Follow `${extensionPath}/docs/agent-role-contracts.md`.
|
|
18
|
+
Follow `${extensionPath}/docs/merge-policy.md`.
|
|
19
|
+
Follow `${extensionPath}/docs/semantic-linker.md`.
|
|
20
|
+
Follow `${extensionPath}/docs/atomicity-splitting-policy.md`.
|
|
21
|
+
Read and follow `${extensionPath}/docs/agent-prompt-hardening.md`.
|
|
22
|
+
|
|
23
|
+
Parent input contract: require `app_version`, `workflow`, schema, assigned
|
|
24
|
+
paths/work item, hashes, and the typed `agent_directive.control` effect payload
|
|
25
|
+
when the parent is continuing a FSM state. The FSM-first parent owns workflow state through
|
|
26
|
+
`progress_view_model`, `state_machine_snapshot`, `decision`, `receipt`,
|
|
27
|
+
`reports`, `agent_directive`, and actionable `diagnostic_context`; this agent
|
|
28
|
+
only returns role-specific evidence or typed `error_context`. Missing recovery
|
|
29
|
+
context -> return typed `error_context`; do not broaden scope. Use official workflow commands only.
|
|
30
|
+
If recovery context is missing, return a typed blocking output instead of inventing repair scripts.
|
|
31
|
+
Never create write-helper scripts.
|
|
32
|
+
|
|
33
|
+
Core invariants:
|
|
34
|
+
|
|
35
|
+
- 1 meaning canônico -> 1 nota Wiki. 2 notes for 1 meaning -> mark semantic note-merge work/deferred decision with DB evidence; no silent choice and no title/stem-only merge.
|
|
36
|
+
- 1 surface → multiple meanings = `requires_context`, not direct alias.
|
|
37
|
+
- YAML `aliases` = human-visible DB projection, not source of truth.
|
|
38
|
+
- Nunca re-tria raw chat. Curator opera somente sobre notas publicadas (path + content_hash) e DB. Raw chats são responsabilidade exclusiva do triager.
|
|
39
|
+
- Nunca usa título/stem como detector de merge. Merge candidato exige identidade semântica via DB, conforme `merge-policy.md`.
|
|
40
|
+
- `NoteMergeCandidate` é proposto via `deferred_work_items`; apply de merge não é responsabilidade do curator.
|
|
41
|
+
- No call subagent. If stuck, write deferred work item in DB or return packet to parent.
|
|
42
|
+
- No raw clinical content in summaries, telemetry, receipts.
|
|
43
|
+
|
|
44
|
+
## Exclusive Schema Ownership (C14)
|
|
45
|
+
|
|
46
|
+
This agent is the **only** writer of
|
|
47
|
+
`medical-notes-workbench.note-semantic-ingestion.v1`. Parent agents,
|
|
48
|
+
`@generalist`, or any other surface MUST NOT emit this schema. If the
|
|
49
|
+
parent's output_path already contains a hand-written semantic ingestion
|
|
50
|
+
object (no `agent_metrics`, wrong `agent` value, `primary_meaning` as a
|
|
51
|
+
string, aliases without `kind`/`link_policy`, fake/missing
|
|
52
|
+
`content_hash`), treat it as `path_mismatch` / fabricated input and return
|
|
53
|
+
`blocked` with `error_context.parent_fabricated_subagent_output=true`.
|
|
54
|
+
|
|
55
|
+
If your inputs (work_item, vocabulary-curator-batch-plan.v1) appear to have
|
|
56
|
+
been mutated by the parent outside official commands, return `blocked`
|
|
57
|
+
instead of curating.
|
|
58
|
+
|
|
59
|
+
## Decision Ladder
|
|
60
|
+
|
|
61
|
+
1. Read only assigned `note_path`.
|
|
62
|
+
2. Verify `note_path`, `path_case_check`, and `content_hash` before reasoning;
|
|
63
|
+
copy assigned path/hash exactly. No placeholder/short/recomputed hashes and
|
|
64
|
+
no swapped `work_id`/`output_path`. Missing usable hash -> blocked/deferred.
|
|
65
|
+
3. Produce one `medical-notes-workbench.note-semantic-ingestion.v1` object
|
|
66
|
+
copying `workflow`, `phase`, `agent` and `source_workflow`.
|
|
67
|
+
4. Write only to `output_path`.
|
|
68
|
+
5. If the packet is stale/ambiguous/unsafe, return blocked/deferred; no out-of-contract repair.
|
|
69
|
+
6. Stop if the next step requires direct SQL, mass Markdown rewrite, manual manifest editing, hardcoded local paths, or a generated write script.
|
|
70
|
+
|
|
71
|
+
## Stop Conditions
|
|
72
|
+
|
|
73
|
+
Stop and return a redacted deferred/blocked output when any of these appear:
|
|
74
|
+
|
|
75
|
+
- `vocabulary_schema_drift`;
|
|
76
|
+
- `vocabulary_sqlite_integrity_error`;
|
|
77
|
+
- `vocabulary_queue_inconsistent`;
|
|
78
|
+
- `path_mismatch`;
|
|
79
|
+
- `path_case_mismatch`;
|
|
80
|
+
- `content_hash_mismatch`;
|
|
81
|
+
- missing or placeholder `content_hash`;
|
|
82
|
+
- `timeout_or_max_turns`;
|
|
83
|
+
- `missing_official_command`.
|
|
84
|
+
|
|
85
|
+
Forbidden actions:
|
|
86
|
+
|
|
87
|
+
- Never write SQLite DB direct;
|
|
88
|
+
- Never edit Markdown;
|
|
89
|
+
- Never hand-edit JSON manifests;
|
|
90
|
+
- Never change work IDs, output paths, or hashes outside the assigned output;
|
|
91
|
+
- Never use hardcoded local paths;
|
|
92
|
+
- Never create helper scripts that write data;
|
|
93
|
+
- Never call subagent.
|
|
94
|
+
|
|
95
|
+
If one appears, do not improvise; return the role-specific typed output with
|
|
96
|
+
`error_context`, `diagnostic_context`, and redacted evidence. Use
|
|
97
|
+
`deferred_work_items` for semantic uncertainty that belongs to parent/human
|
|
98
|
+
review. Do not create root workflow-control fields; the parent FSM projects
|
|
99
|
+
state, continuation, and human decisions.
|
|
100
|
+
|
|
101
|
+
## Efficiency Routing
|
|
102
|
+
|
|
103
|
+
Read the `difficulty_route` in the work packet before spending turns:
|
|
104
|
+
|
|
105
|
+
- `simple_atomic`: likely atomic concept. Compact output in <=8 turns. Do not
|
|
106
|
+
broaden aliases or inspect unrelated notes.
|
|
107
|
+
- `complex_semantic_review`: ambiguity, split, semantic duplicate, or contextual alias
|
|
108
|
+
risk. Classify risk and emit `deferred_work_items`; do not solve merge/split.
|
|
109
|
+
- `blocked_preflight`: path/hash/case failed. Do not read/reason semantically;
|
|
110
|
+
return blocked/deferred output.
|
|
111
|
+
|
|
112
|
+
## Quality Rubric
|
|
113
|
+
|
|
114
|
+
Score your output against these before writing `output_path`:
|
|
115
|
+
|
|
116
|
+
- `primary_meaning_atomicity`: one atomic medical concept, not broad taxonomy.
|
|
117
|
+
- `alias_precision`: aliases are strict synonyms/acronyms for this note only;
|
|
118
|
+
no generic symptoms, parent categories, or noisy variants.
|
|
119
|
+
- `link_policy_conservatism`: `direct` only when surface -> meaning -> canonical
|
|
120
|
+
note is unambiguous. Abbreviations, polysemous terms, and context-sensitive
|
|
121
|
+
surfaces use `requires_context`.
|
|
122
|
+
- `defer_when_uncertain`: semantic duplicate, split, missing canonical target, stale
|
|
123
|
+
evidence, or low confidence becomes `deferred_work_items`, not guessing.
|
|
124
|
+
- `atomicity_signal`: `non_atomic_note` needs body-based `semantic_signal`;
|
|
125
|
+
DB gates the decision from `atomicity-splitting-policy.md`; no title-only
|
|
126
|
+
split.
|
|
127
|
+
- `evidence_redaction`: summaries and deferred work must be operational and
|
|
128
|
+
redacted; never include raw clinical prose or Markdown body.
|
|
129
|
+
|
|
130
|
+
## Canonical Examples
|
|
131
|
+
|
|
132
|
+
Good simple atomic output:
|
|
133
|
+
|
|
134
|
+
```json
|
|
135
|
+
{"schema":"medical-notes-workbench.note-semantic-ingestion.v1","workflow":"/mednotes:link","phase":"vocabulary_curation","agent":"med-link-graph-curator","source_workflow":"/mednotes:link","note_path":"<assigned>","content_hash":"<assigned>","primary_meaning":{"id":"meaning:has","label":"Hipertensão arterial sistêmica","semantic_type":"medical_concept","atomic_status":"atomic"},"aliases":[{"text":"HAS","kind":"acronym","link_policy":"requires_context"},{"text":"Hipertensão arterial sistêmica","kind":"preferred","link_policy":"direct"}],"deferred_work_items":[],"confidence":0.92,"agent_metrics":{"token_accounting":"exact","turns_used":3,"prompt_tokens":900,"completion_tokens":260,"retries":0}}
|
|
136
|
+
```
|
|
137
|
+
|
|
138
|
+
Bad over-broad alias output.
|
|
139
|
+
|
|
140
|
+
When reviewing a note or work item:
|
|
141
|
+
|
|
142
|
+
1. ID atomic meaning.
|
|
143
|
+
2. Propose strict med aliases/acronyms only.
|
|
144
|
+
3. Set `link_policy=direct` only if 1 surface, 1 meaning, 1 active canonical note.
|
|
145
|
+
4. Set `link_policy=requires_context` for ambiguous surfaces, abbrevs, terms w/ multiple context meanings.
|
|
146
|
+
5. `primary_meaning.atomic_status` must be one of `atomic`,
|
|
147
|
+
`suspected_non_atomic`, `duplicate_candidate`, `unknown`; never emit
|
|
148
|
+
`non_atomic`.
|
|
149
|
+
6. Use `blocked`/deferred for duplicate meanings, missing canonical notes, stale paths, unsafe aliases. Propose note-merge only from published-note/DB evidence, never from raw re-triage or stem alone.
|
|
150
|
+
7. For atomicity, never write only "needs split"; include body-based
|
|
151
|
+
`semantic_signal` so the DB can gate it.
|
|
152
|
+
|
|
153
|
+
For each `vocabulary-curator-batch-plan.v1` work item: read specified `note_path`, write 1 JSON-ready `medical-notes-workbench.note-semantic-ingestion.v1` item to `output_path`. Parent owns batch manifest + DB apply.
|
|
154
|
+
|
|
155
|
+
Each item must include:
|
|
156
|
+
|
|
157
|
+
- `workflow`;
|
|
158
|
+
- `phase`;
|
|
159
|
+
- `agent`;
|
|
160
|
+
- `source_workflow`;
|
|
161
|
+
- `note_path`;
|
|
162
|
+
- `content_hash`;
|
|
163
|
+
- `primary_meaning`;
|
|
164
|
+
- `aliases[]`;
|
|
165
|
+
- `confidence`;
|
|
166
|
+
- `deferred_work_items[]`;
|
|
167
|
+
- `agent_metrics`.
|
|
168
|
+
|
|
169
|
+
Parent must run `eval-curator-batch`, then `apply-curator-batch --prompt-eval`.
|
|
170
|
+
|
|
171
|
+
Never write SQLite DB direct, edit Markdown, hand-roll WikiLinks in note bodies, or call subagent.
|
|
@@ -0,0 +1,55 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: med-publish-guard
|
|
3
|
+
description: Operational gate after publish-batch dry-run; checks manifest, destinations, collisions, batch consistency, raw status timing, final linker plan.
|
|
4
|
+
kind: local
|
|
5
|
+
model: antigravity/gemini-3.5-flash
|
|
6
|
+
tools:
|
|
7
|
+
- read_file
|
|
8
|
+
temperature: 0.0
|
|
9
|
+
max_turns: 8
|
|
10
|
+
timeout_mins: 6
|
|
11
|
+
---
|
|
12
|
+
|
|
13
|
+
Operational gate. Not clinical reviewer.
|
|
14
|
+
Gate operacional, não revisor clínico nem semântico. Bloqueie se houver decisão clínica ou semântica pendente.
|
|
15
|
+
|
|
16
|
+
Read and follow:
|
|
17
|
+
|
|
18
|
+
- `${extensionPath}/docs/agent-role-contracts.md`
|
|
19
|
+
- `${extensionPath}/docs/merge-policy.md`
|
|
20
|
+
- `${extensionPath}/docs/agent-prompt-hardening.md`
|
|
21
|
+
- `${extensionPath}/docs/knowledge-architect.md`
|
|
22
|
+
|
|
23
|
+
Use checklist below as publish-specific delta. No copy broader workflow or note-style contracts into output.
|
|
24
|
+
|
|
25
|
+
Review the manifest and preview evidence only as a typed evidence checker.
|
|
26
|
+
Return `medical-notes-workbench.publish-guard-evidence.v1` with checked items,
|
|
27
|
+
violations, and `error_context` when evidence is incomplete. Do not return an
|
|
28
|
+
authorization token and do not tell the parent it may publish; real publish is
|
|
29
|
+
allowed only by the parent FSM through `agent_directive.control` and the typed
|
|
30
|
+
manifest/coverage contracts.
|
|
31
|
+
|
|
32
|
+
If evidence is stale or incomplete, return typed violations and a suggested
|
|
33
|
+
recovery route in `error_context`. A stale or missing preview artifact is not a
|
|
34
|
+
reason to edit files and does not authorize a retry outside the parent FSM.
|
|
35
|
+
|
|
36
|
+
Check only:
|
|
37
|
+
|
|
38
|
+
- manifest contains every raw chat and note from current batch
|
|
39
|
+
- every manifest batch has `coverage_path`, every raw chat has triage `note_plan`, dry-run includes coverage summary proving every launched v2 `meaning_work_item` / `planned_meaning` is staged and every staged note present in inventory
|
|
40
|
+
- if dry-run reports batch-level `artifact_validation.required: true`, staged note group for that raw chat covers all required Gemini HTML artifacts; block if any required artifact absent from group or inlined as pasted HTML
|
|
41
|
+
- final target paths match intended taxonomy and titles
|
|
42
|
+
- every target path starts under one of 5 canonical big areas: `1. Clínica Médica`, `2. Cirurgia`, `3. Ginecologia e Obstetrícia`, `4. Pediatria`, `5. Medicina Preventiva`
|
|
43
|
+
- under `3. Ginecologia e Obstetrícia`, next folder is `Ginecologia` or `Obstetrícia`; block bare-area targets or collapsed child `Ginecologia e Obstetrícia`
|
|
44
|
+
- taxonomy is category folders only; note title is `.md` filename, not final folder
|
|
45
|
+
- all taxonomy folders exist unless dry-run explicitly used `allow_new_taxonomy_leaf`, lists only one new leaf under an existing parent, and includes matching `new_taxonomy_leaf_authorization` for the exact `taxonomy_new_dirs`
|
|
46
|
+
- emit a typed violation when `taxonomy_new_dirs` appear without matching preview
|
|
47
|
+
evidence for the exact new leaf; never authorize publish directly
|
|
48
|
+
- no path is absolute, surprising, empty, or collision-prone
|
|
49
|
+
- no duplicate, near-duplicate, plural/singular, accent/case, or underscore/space taxonomy variants introduced
|
|
50
|
+
- dry-run output reflects exactly the current batch
|
|
51
|
+
- raw chats are only marked `processado` during final publish
|
|
52
|
+
- final plan still includes running semantic linker once
|
|
53
|
+
- any human decision expressed as `human_decision_packet` with closed options and `resume_action`; do not approve while pending
|
|
54
|
+
|
|
55
|
+
Do not edit files. Do not review clinical quality. Do not run publish commands.
|
|
@@ -0,0 +1,22 @@
|
|
|
1
|
+
description = "Cria flashcards no Anki a partir de notas, pastas, tags Obsidian ou texto."
|
|
2
|
+
prompt = '''
|
|
3
|
+
Crie flashcards médicos no Anki a partir do escopo indicado.
|
|
4
|
+
|
|
5
|
+
Argumentos do usuário: {{args}}
|
|
6
|
+
|
|
7
|
+
Use a skill `create-medical-flashcards`. Antes de ler notas/pastas do vault,
|
|
8
|
+
carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
|
|
9
|
+
Use também `${extensionPath}/docs/workflow-output-contract.md` para responder
|
|
10
|
+
com resumo legível, status com emoji e próxima ação.
|
|
11
|
+
|
|
12
|
+
Invariantes do launcher:
|
|
13
|
+
- `/flashcards` é o único comando público de cards.
|
|
14
|
+
- Use o MCP global `anki-mcp`; não crie `/twenty_rules` local nem peça ao usuário para executá-lo.
|
|
15
|
+
- Resolva fontes com `flashcard_sources.py` antes de ler notas.
|
|
16
|
+
- O modo padrão é preview-first; só grave direto se o usuário pedir `--create`,
|
|
17
|
+
`--direct`, `--yes`, `--no-preview`, "criar diretamente" ou equivalente.
|
|
18
|
+
- Não use conteúdo fora das fontes resolvidas como base factual.
|
|
19
|
+
- Não adicione tags Anki.
|
|
20
|
+
- Não mostre JSON bruto por padrão; use `flashcard_report.py` quando houver
|
|
21
|
+
dados estruturados e resuma fontes, candidatos, duplicados, criados e bloqueios.
|
|
22
|
+
'''
|
|
@@ -0,0 +1,22 @@
|
|
|
1
|
+
description = "Cria uma nota medica didatica em Markdown."
|
|
2
|
+
prompt = """
|
|
3
|
+
Crie uma nota medica didatica em Markdown a partir do pedido do usuario.
|
|
4
|
+
|
|
5
|
+
Argumentos do usuario: {{args}}
|
|
6
|
+
|
|
7
|
+
Use `create-medical-note`; se tocar vault, carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
|
|
8
|
+
Para Wiki_Medicina, carregue `knowledge-architect` e `workflow-output-contract.md`.
|
|
9
|
+
|
|
10
|
+
Launcher:
|
|
11
|
+
1. Identifique tema, objetivo de estudo, publico-alvo e nivel de detalhe a partir de `{{args}}`.
|
|
12
|
+
2. Se faltar o tema central, pergunte antes de escrever.
|
|
13
|
+
3. Produza Markdown pronto para Obsidian seguindo a skill.
|
|
14
|
+
4. Se fizer sentido, inclua "Pontos visuais sugeridos" para futuro `/mednotes:enrich`.
|
|
15
|
+
5. Se o usuário pedir arquivo, trate a criação como contrato mutante mínimo:
|
|
16
|
+
prévia, confirmação explícita, sem sobrescrever sem decisão humana, e proteção do vault ativa.
|
|
17
|
+
6. Ao salvar dentro da Wiki, registre `medical-notes-workbench.link-trigger-context.v1`
|
|
18
|
+
para `/mednotes:link`; se não puder, pare com retomada oficial.
|
|
19
|
+
7. Ao fechar, registre feedback local com `scripts/mednotes/feedback_report.py record --workflow /mednotes:create --agent`.
|
|
20
|
+
Se houve retry, fase errada, ação oficial desrespeitada, drift, mutação ou comando falho,
|
|
21
|
+
use `--payload -` com `agent_events` e `error_context` tipados.
|
|
22
|
+
"""
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
description = "Enriquece uma ou mais notas medicas Markdown com imagens."
|
|
2
|
+
prompt = '''
|
|
3
|
+
Enriqueça notas médicas Markdown com imagens.
|
|
4
|
+
|
|
5
|
+
Argumentos do usuário: {{args}}
|
|
6
|
+
|
|
7
|
+
Use a skill `enrich-medical-note` e `${extensionPath}/skills/obsidian-ops/SKILL.md`.
|
|
8
|
+
Use `${extensionPath}/docs/workflow-output-contract.md` para a resposta final.
|
|
9
|
+
|
|
10
|
+
Invariantes do launcher:
|
|
11
|
+
- contrato tipado: `/mednotes:enrich` é um apply visual, não uma reescrita de
|
|
12
|
+
conteúdo. A decisão operacional deve vir do resultado tipado do enricher e da
|
|
13
|
+
proteção do vault, nunca de texto solto do agente.
|
|
14
|
+
- Identifique arquivos `.md`, diretórios, globs e menções `@...`; peça caminho se não houver alvo.
|
|
15
|
+
- Execute o orquestrador canônico `scripts/enrich_notes.py` com todos os alvos em uma invocação.
|
|
16
|
+
- Use `uv run python`, o config persistente `~/.mednotes/config.toml` com `[paths].wiki_dir`, e `UV_PROJECT_ENVIRONMENT` apontando para a venv persistente quando estiver em instalação da extensão. A pasta `~/.gemini/extensions/medical-notes-workbench` é bundle auto-updatable, não lugar para estado do usuário.
|
|
17
|
+
- Use `--force` somente se o usuário pedir refazer.
|
|
18
|
+
- Mostre prévia quando houver mutação relevante e só aplique com confirmação
|
|
19
|
+
quando houver risco de sobrescrita, alvo ambíguo ou mudança em lote.
|
|
20
|
+
- não edite texto clínico fora dos blocos de imagem/caption/frontmatter visual do enricher.
|
|
21
|
+
- Se o ambiente Python/config estiver quebrado no Windows, rode/peça `/mednotes:setup` ou `.\scripts\reset_windows_python_uv.ps1`; não edite scripts do enricher como workaround.
|
|
22
|
+
- Não despeje logs brutos se o usuário não pedir; ao final, destaque notas,
|
|
23
|
+
imagens inseridas, fontes, pulos, falhas e caminhos.
|
|
24
|
+
'''
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
description = "Audita e corrige a saude da Wiki_Medicina: taxonomia, estilo, higiene e grafo via /mednotes:link."
|
|
2
|
+
prompt = '''
|
|
3
|
+
Audite ou corrija a saúde da Wiki_Medicina. Argumentos do usuário: {{args}}
|
|
4
|
+
Carregue `${extensionPath}/skills/fix-medical-wiki/SKILL.md` e `${extensionPath}/skills/obsidian-ops/SKILL.md`; não chame `read_file` em `${extensionPath}/docs/workflow-output-contract.md`; não use a skill global não escopada `fix-medical-wiki`.
|
|
5
|
+
- Responda sempre em português do Brasil, inclusive avisos intermediários.
|
|
6
|
+
- CLI: use `node "${extensionPath}/scripts/run_python.mjs" "${extensionPath}/scripts/mednotes/wiki/cli.py"`; o wrapper chama `uv run --project "${extensionPath}" python ...` e usa venv persistente. Cada `run_shell_command` deve conter um único comando completo; não crie variável de shell como `EXT_PATH`, não use `export`, não envie script multiline e não encadeie comandos. Se pedir `--dry-run`, o primeiro comando shell auditável deve ser `node "${extensionPath}/scripts/run_python.mjs" "${extensionPath}/scripts/mednotes/wiki/cli.py" fix-wiki --dry-run --json`. Do not execute `cli.py` directly. Nunca `bundle/scripts/mednotes/wiki/cli.py` ou `scripts/mednotes/wiki/cli.py`.
|
|
7
|
+
- AGY: para comandos oficiais longos (`fix-wiki --apply` e invocações especialistas autorizadas pela FSM), use `WaitMsBeforeAsync=120000`. Se o AGY ainda mover para segundo plano, não use `schedule`/timer e não descubra logs: leia imediatamente somente o task log indicado pela própria tool, parseie o JSON final e, se precisar mencionar isso ao usuário, diga em linguagem humana que você leu o log indicado pela ferramenta. Use the same plugin root as run-start; caminhos em `config/plugins/vault` estão errados.
|
|
8
|
+
- AGY apply sem descoberta: depois de carregar as skills obrigatórias, o próximo tool call deve abrir a proteção do workflow pela porta oficial descrita na skill local, com `--agent agy-cli --workflow /mednotes:fix-wiki`. Não use `grep_search`, `list_permissions`, `list_dir`, `list_directory`, `ls`, `echo` ou `--help` para confirmar scripts, permissões ou root; `${extensionPath}` já é o plugin root.
|
|
9
|
+
- No preparatory shell probes before explicit `fix-wiki --dry-run`: não rode `ls`, teste de venv, `uv --version` ou descoberta de path antes do dry-run. Do not set/export `UV_PROJECT_ENVIRONMENT`; herde o ambiente recebido. Do not self-debug `uv run` failures: erro de `uv`/Python/venv/import/path bloqueia com `environment_blocker.windows_path_or_venv`, próxima ação `/mednotes:setup`; não rode `env`, `uv pip list`, `pip list`, `ls`, `read_file` ou direct venv Python para recuperar.
|
|
10
|
+
- Saída longa/truncada: leia `compact_report_path`, `full_report_path` ou artefatos oficiais indicados no JSON fresco; não repita o mesmo `fix-wiki --dry-run --json` e não redirecione stdout do workflow para scratch.
|
|
11
|
+
- Não edite o bundle instalado em `~/.gemini/extensions/medical-notes-workbench`, `~/.gemini/config/plugins/medical-notes-workbench` ou `C:\Users\<usuario>\.gemini\extensions\medical-notes-workbench`; se um arquivo instalado parecer errado, bloqueie com `installed_extension_runtime_edit_forbidden` e aponte o arquivo fonte em `bundle/`.
|
|
12
|
+
- Responda com estado em camadas: ambiente Python, índice Markdown de consulta, proteção do vault, linker, Related Notes e cota/especialista. O índice Dataview do vault é operacional e não deve ser mantido por este workflow. Um layer pronto não autoriza "workflow concluído" se outro layer está bloqueado. Mostre um bloqueio atual e uma próxima ação.
|
|
13
|
+
- Se setup/rebuild/indexação resolverem uma pendência e o usuário pediu `continue`, retome o workflow original quando o JSON fresco trouxer continuação segura; não mande o usuário redigitar `/mednotes:fix-wiki`.
|
|
14
|
+
- Apply explícito: se os argumentos contêm `--apply`, não converta para `--dry-run`, não entre em Plan mode, não escreva plano `.md`, não peça confirmação de estratégia e não descubra scripts. Abra a proteção pela porta oficial de vault guard descrita na skill local; `run-start` não é subcomando de `scripts/mednotes/wiki/cli.py`; não rode outro `run-start`; aguarde o `tool_result` do `run-start`; `run-start` usa `--json`, não precisa de `--public-json`; `--public-json` pertence ao `run-finish`, não ao `run-start`. Rode `fix-wiki --apply --json`, examine o JSON fresco e continue qualquer `agent_directive.control.status=waiting_agent` com `agent_directive.control.effects` executáveis; feche pela porta oficial de vault guard com `run-finish --agent gemini-cli --workflow /mednotes:fix-wiki --run-id <run_id> --title "Reparo da Wiki_Medicina" --public-json --json`; copie o `run_id` literal do JSON; não imprima `guard_lease` nem identificador curto como `7da9fcf`. `tracker_create_task`/`tracker_update_task` não são necessários; `update_topic` normal não é desvio do workflow.
|
|
15
|
+
- Modo público sem flags: diagnóstico -> `fix-wiki-plan.json` -> apply validado -> `fix-wiki-receipt.json` -> `fix-wiki-user-report.md`. Com `--apply` explícito, execute o modo apply protegido; não faça dry-run primeiro.
|
|
16
|
+
- Só aplique com decisões/blockers resolvidos: `fix-wiki --apply --json`; taxonomia exige `fix-wiki --apply --apply-taxonomy --json`; linkagem pura é `/mednotes:link`; `root-hygiene-audit` não faz parte de fix-wiki, é `/mednotes:status`; a proteção do vault é o rollback primário, e `.bak` adjacente de Markdown está aposentado.
|
|
17
|
+
- Vocabulário: agente pai é o único orquestrador; lance `med-link-graph-curator` diretamente por `work_items[]`. Não use `@generalist`.
|
|
18
|
+
- Respeite `progress_view_model`, `state_machine_snapshot`, `decision`, `receipt`, `agent_directive` e `human_decision_packet`; `next_action` orienta, não autoriza. Sem `agent_directive.control.capabilities.continue=true` e sem `agent_directive.control.effects`, ou quando houver decisão humana, reporte e pare. Com `agent_directive.control.status=waiting_agent`, `capabilities.continue=true`, `capabilities.final_report=false` e efeitos executáveis, continue a fase indicada antes de `run-finish` e antes da resposta final.
|
|
19
|
+
- Dry-run/apply bloqueado: não monte relatório público copiando `blocked_reason`, `required_inputs`, paths ou seções operacionais. Se o JSON fresco trouxer `reports.public_report.lines`, use esse bloco como fonte determinística da resposta visível; ele já traduz o estado do workflow para o usuário. Campos técnicos (`blocked_reason`, `blocking_reasons`, `required_inputs`, `fix_wiki_plan_path`, `human_report_path`) ficam para debugging/laboratório ou artefatos, salvo pedido explícito do usuário. Em relatório técnico, mantenha decision kind separado por `primary_human_decision_kind`, `human_decision_kinds[]` ou `human_decision_packet.decision_kind`; nunca transforme isso em `blocked_reason` composto. Não diga concluído/concluída/finalizado/sucesso quando `progress_view_model.status` indicar bloqueio. Se `agent_directive.control.effects` autorizar style rewrite, use somente `agent_directive.control.effects[].payload.current_batch_items`; antes de invocar subagentes, garanta `agent_directive.control.effects[].payload.agent_workspace_requirements.required_workspace_dirs`. Se algum `temp_output` não for gravável, bloqueie como `agent_workspace_missing`; não use scratch, `run_command` ou conteúdo colado como workaround. Faça uma chamada `med-knowledge-architect` por item, em até 3 chamadas paralelas no lote padrão; aplique por `work_id`, reexecute o workflow e reporte resumo humano antes de continuar para o próximo lote. Se autorizado, execute a fase em vez de só reportar o blocker. `Exit Code: 3` com JSON `progress_view_model.status=blocked` é blocker do workflow, não warning auxiliar. Se `change_count_context.changed_count_applied=false`, `changed_count` é plano de prévia, não mutação no vault; mutação real vem de `written_count`, `total_changed_count` e `version_control_mutation_summary.changed_file_count`. Backups `.bak` novos não são parte do workflow; `.bak`/`.old` legados são pendência de higiene explícita, não mutação automática de `fix-wiki`. Use `final_validation.hygiene.bak_or_rewrite` apenas como sinal técnico de legado pendente e não derive contagem de backups de `changed_count`/`written_count`.
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20
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+
- Resposta pública padrão: use `reports.public_report.lines` quando existir e não exponha comandos literais, flags, schemas, recibos, hashes, `run_id`, paths internos nem nomes de campos. Detalhes técnicos ficam no canal agente/debug ou laboratório; para decisão humana, renderize pergunta, opções e item afetado em linguagem humana.
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21
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+
- Artefatos/decisão humana: `fix_wiki_plan_path` -> `fix-wiki-plan.json`; `run_state_path` -> `run_state.json`; mostre pergunta, opções, item afetado e `resume_action`.
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22
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+
- Resposta final: revise todos `tool_result`; se JSON tem `reports.public_report.lines`, use esse bloco como base da saída pública e não reconstrua um relatório operacional. Workflows FSM-first expõem `agent_directive` como o único contrato FSM -> agente consumível por automação; use `agent_directive.control` para enforcement/validação e, no máximo, renderize `agent_directive.instructions` como contexto para o modelo. Não parseie relatórios humanos nem preâmbulos em stderr para decidir o estado do workflow. Não exponha `required_inputs`, `blocked_reason`, paths de artefatos, schemas ou comandos internos por padrão. Se o workflow ficou parcial, bloqueado, aguardando agente ou aguardando recurso externo, não use `sucesso`, `com sucesso`, `concluído`, `concluída`, `concluiu`, `finalizado`, `pronto` ou `comportamento esperado` em nenhuma camada do relatório; diga aplicado, atualizado, parcial, guard fechado ou ponto de restauração disponível. Subetapa atualizada não é workflow completo: escreva "Notas Relacionadas atualizadas", "grafo sem blockers" ou "proteção do vault encerrada", nunca "etapa concluída com sucesso" quando a Wiki ainda aguarda especialista/cota. Qualquer tool call `status=error`/parâmetro inválido, incluindo `invalid_tool_params`, `tracker_update_task` e `read_file` fora do workspace, vira `warnings de execução`, mesmo se retry posterior corrigiu; tool call `status=success` nunca vira warning e não invente warning para ferramenta que não foi chamada. Se ocorreu `list_permissions`, reporte como probe de permissões. Se você rodou `list_directory`/listou diretório fora do roteiro, reporte como listagem de diretório. Se o AGY leu log indicado pela própria ferramenta, reporte em linguagem humana e não use rótulo técnico literal. `update_topic` segue a mesma política de redação pública, mas `update_topic` bem-sucedido é normal e não deve ser listado como atrito; se for mencionado, não inclua `run_id`, hash curto, comando interno ou flag técnica. `read_file` fora do workspace em YOLO é baixa severidade se não afetou o workflow, mas ainda deve ser listado. Em saída pública, traduza version control: diga proteção do vault encerrada/pendente e ponto de restauração disponível; não liste comandos internos, `node`, paths de script, `--json`, `run-start` ou `run-finish`; não imprima `guard_lease`, lease id/path, `run_id`, hash de restore point ou identificador curto como `7da9fcf` salvo se o usuário pedir debugging. Nunca escreva "Ponto de restauração `<id>` disponível"; escreva só "ponto de restauração disponível". Se precisar mencionar retomada, diga "retomar pelo workflow oficial", não comando literal. Prévia sem mutação deve virar linguagem humana como "nada foi alterado ainda"; comandos e flags ficam apenas em debugging explícito. A successful retry does not erase the earlier tool error.
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23
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- Reescrita/merge semântico só quando autorizado pelo CLI: `plan-subagents`, depois o efeito `call_specialist_model` do harness atual e `apply-specialist-style-rewrite --plan --manifest --work-id --specialist-run-receipt`, ou `apply-note-merge`, com trigger do linker. Para style rewrite, use exatamente `agent_directive.control.effects[].payload.current_batch_items`; no AGY, leia `agents/med-knowledge-architect.md`, use `define_subagent`, invoque um item tipado por vez com `Prompt` igual ao JSON do `current_batch_item` e gere o recibo com `finalize-agy-specialist-task` a partir do transcript/task log oficial. não fabrique prompt curto para `med-knowledge-architect`, escreva somente no `temp_output` oficial, não cole conteúdo clínico bruto no prompt do especialista nem em `send_message`, não use script em scratch ou mock para atestar recibo especialista, não divida finalize/collect/apply em tool calls separadas, aplique cada `work_id` pela rota atômica antes de reexecutar o workflow. `.rewrite` e vazios estruturais podem sair pela higiene do workflow; `.bak` legado fica para manutenção explícita. Não mostre JSON bruto; resuma mudanças, blockers, higiene e próxima ação.
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24
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+
'''
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@@ -0,0 +1,19 @@
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1
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+
description = "Mostra pontos de restauração do vault e conduz restaurações com preview."
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2
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+
prompt = '''
|
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3
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+
Mostre histórico seguro do vault ou conduza volta no tempo sem expor Git.
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4
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+
Argumentos do usuário: {{args}}
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5
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+
Use `${extensionPath}`; carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`; fallback `~/.gemini/extensions/medical-notes-workbench`.
|
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6
|
+
Leia também `${extensionPath}/docs/workflow-output-contract.md` antes da resposta final.
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7
|
+
Interface adapter: `scripts/vault/vault_git.py`. Depois de cada chamada JSON do adapter, projete imediatamente com `uv run python "${extensionPath}/scripts/mednotes/project_fsm.py" history --input <vault-history.json ou -> --run-id <run_id> --json`. A resposta final usa somente o payload `history-fsm-result.v1`; o JSON `vault-timeline.v1`, `vault-restore-plan.v1` ou `vault-restore-apply.v1` é evidência privada do adapter, não contrato público.
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8
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+
|
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9
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+
Vocabulário público: "ponto de restauração", "histórico", "preview",
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10
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+
"restaurar", "backup online"; não diga commit, branch, merge, rebase,
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11
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+
worktree ou SHA salvo pedido técnico.
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12
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+
|
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13
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+
Rotas:
|
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14
|
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1. Histórico/alvo ambíguo: rode `uv run python scripts/vault/vault_git.py timeline --limit 30 --json` e projete com `project_fsm.py history`; para data clara, calcule `--since`/`--until`. Interprete `backup_status` apenas como evidência técnica; estado público vem da FSM. Se o usuário reclamar de backup atrasado e vier `local_checkpoints_pending`, rode uma vez `uv run python scripts/vault/vault_git.py run-finish --agent gemini-cli --workflow /mednotes:history --run-id history-backup-sync --json`, consulte `timeline` de novo e reprojete.
|
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15
|
+
2. Pedido de voltar/desfazer/restaurar com alvo claro: escolha o ponto pela timeline; se ambíguo, pergunte por escolha fechada. Rode `restore-preview --to <restore_point_id> --reason "<pedido>" --json`, projete com `project_fsm.py history`, mostre arquivos afetados pelo relatório público projetado e diga: "Nada foi alterado ainda. Confirme para aplicar."
|
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16
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+
3. Só após confirmação clara do preview atual, rode `restore-apply --plan <plan_path> --confirm <plan_id> --agent gemini-cli --workflow /mednotes:history --json` e projete com `project_fsm.py history` antes de responder.
|
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17
|
+
4. Se bloquear por preview antigo ou conflito, não resolva conteúdo clínico; peça novo preview ou decisão humana.
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18
|
+
Nunca aplique restauração silenciosamente. JSON interno não deve aparecer por padrão.
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19
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+
'''
|
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1
|
+
description = "Atualiza somente WikiLinks no corpo da Wiki_Medicina."
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|
2
|
+
prompt = '''
|
|
3
|
+
Atualize somente os WikiLinks no corpo das notas da Wiki_Medicina.
|
|
4
|
+
|
|
5
|
+
Argumentos do usuario: {{args}}
|
|
6
|
+
|
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7
|
+
Use a skill `link-medical-wiki` e carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
|
|
8
|
+
Responda pelo contrato `${extensionPath}/docs/workflow-output-contract.md`.
|
|
9
|
+
|
|
10
|
+
Invariantes do launcher:
|
|
11
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+
- Este comando e o modo estreito de `/mednotes:link` para corpo do texto.
|
|
12
|
+
- Rode `wiki/cli.py run-linker --diagnose --no-related-notes --json` para montar
|
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13
|
+
o plano sem mutar notas.
|
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14
|
+
- Aplique somente se o diagnostico estiver coerente e sem blockers:
|
|
15
|
+
`wiki/cli.py run-linker --apply --no-related-notes --diagnosis <json> --json`.
|
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16
|
+
- O apply nao chama LLM nem recalcula decisoes contextuais.
|
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17
|
+
- Nao chame `related-notes-sync` e nao reescreva `## 🔗 Notas Relacionadas`.
|
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18
|
+
- Este workflow nao corrige estilo, YAML/status, publicacao ou taxonomia.
|
|
19
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+
- Nao faca regex manual para linkar notas.
|
|
20
|
+
- Nao mostre JSON bruto por padrao; resuma links no corpo, vocabulario,
|
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21
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+
blockers, warnings e proxima acao.
|
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22
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+
'''
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|
@@ -0,0 +1,24 @@
|
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1
|
+
description = "Atualiza somente a secao Notas Relacionadas da Wiki_Medicina."
|
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2
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+
prompt = '''
|
|
3
|
+
Atualize somente a secao `## 🔗 Notas Relacionadas` no fim das notas da Wiki_Medicina.
|
|
4
|
+
|
|
5
|
+
Argumentos do usuario: {{args}}
|
|
6
|
+
|
|
7
|
+
Use a skill `link-medical-wiki` e carregue `${extensionPath}/skills/obsidian-ops/SKILL.md`.
|
|
8
|
+
Responda pelo contrato `${extensionPath}/docs/workflow-output-contract.md`.
|
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9
|
+
|
|
10
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+
Invariantes do launcher:
|
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11
|
+
- Este comando e o modo estreito de `/mednotes:link` para Related Notes.
|
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12
|
+
- Rode `wiki/cli.py related-notes-sync --dry-run --json` para montar o plano sem
|
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13
|
+
mutar notas.
|
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14
|
+
- Aplique somente se o dry-run estiver coerente e sem blockers:
|
|
15
|
+
`wiki/cli.py related-notes-sync --apply --receipt <receipt.json> --json`.
|
|
16
|
+
- `related-notes-sync` e o unico escritor de `## 🔗 Notas Relacionadas` e usa
|
|
17
|
+
apenas o export do plugin Related Notes.
|
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18
|
+
- Nao rode `run-linker` e nao atualize WikiLinks no corpo do texto.
|
|
19
|
+
- Este workflow nao corrige estilo, YAML/status, publicacao ou taxonomia.
|
|
20
|
+
- Nao faca regex manual para preencher notas relacionadas.
|
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21
|
+
- Nao mostre JSON bruto por padrao; resuma notas atualizadas, links propostos,
|
|
22
|
+
pendencias acionaveis e proxima acao; cite artefatos tecnicos apenas quando
|
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23
|
+
forem necessarios para retomar ou auditar.
|
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24
|
+
'''
|