mednotes-opencode 0.1.0

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Files changed (430) hide show
  1. package/.opencode/agents/med-chat-triager.md +204 -0
  2. package/.opencode/agents/med-flashcard-maker.md +63 -0
  3. package/.opencode/agents/med-knowledge-architect.md +230 -0
  4. package/.opencode/agents/med-link-graph-curator.md +177 -0
  5. package/.opencode/agents/med-publish-guard.md +62 -0
  6. package/.opencode/commands/flashcards.md +25 -0
  7. package/.opencode/commands/mednotes/create.md +25 -0
  8. package/.opencode/commands/mednotes/enrich.md +27 -0
  9. package/.opencode/commands/mednotes/fix-wiki.md +27 -0
  10. package/.opencode/commands/mednotes/history.md +22 -0
  11. package/.opencode/commands/mednotes/link-body.md +25 -0
  12. package/.opencode/commands/mednotes/link-related.md +27 -0
  13. package/.opencode/commands/mednotes/link.md +27 -0
  14. package/.opencode/commands/mednotes/pdf-library.md +27 -0
  15. package/.opencode/commands/mednotes/process-chats.md +23 -0
  16. package/.opencode/commands/mednotes/setup.md +21 -0
  17. package/.opencode/commands/mednotes/status.md +27 -0
  18. package/.opencode/commands/mednotes/telemetry.md +27 -0
  19. package/.opencode/commands/report.md +26 -0
  20. package/.opencode/mednotes/AGENTS.md +57 -0
  21. package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
  22. package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
  23. package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
  24. package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
  25. package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
  26. package/.opencode/mednotes/contracts/.gitkeep +1 -0
  27. package/.opencode/mednotes/contracts/agents.json +116 -0
  28. package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
  29. package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
  30. package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
  31. package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
  32. package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
  33. package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
  34. package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
  35. package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
  36. package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
  37. package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
  38. package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
  39. package/.opencode/mednotes/docs/extension-docs.md +40 -0
  40. package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
  41. package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
  42. package/.opencode/mednotes/docs/merge-policy.md +110 -0
  43. package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
  44. package/.opencode/mednotes/docs/semantic-linker.md +141 -0
  45. package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
  46. package/.opencode/mednotes/docs/triage-policy.md +187 -0
  47. package/.opencode/mednotes/docs/vault-version-control.md +758 -0
  48. package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
  49. package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
  50. package/.opencode/mednotes/hooks/hooks.json +79 -0
  51. package/.opencode/mednotes/package-lock.json +6361 -0
  52. package/.opencode/mednotes/package.json +15 -0
  53. package/.opencode/mednotes/pyproject.toml +48 -0
  54. package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
  55. package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
  56. package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
  57. package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
  58. package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
  59. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
  60. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
  61. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
  62. package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
  63. package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
  64. package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
  65. package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
  66. package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
  67. package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
  68. package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
  69. package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
  70. package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
  71. package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
  72. package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
  73. package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
  74. package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
  75. package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
  76. package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
  77. package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
  78. package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
  79. package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
  80. package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
  81. package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
  82. package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
  83. package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
  84. package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
  85. package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
  86. package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
  87. package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
  88. package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
  89. package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
  90. package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
  91. package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
  92. package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
  93. package/.opencode/mednotes/scripts/run_python.mjs +109 -0
  94. package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
  95. package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
  96. package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
  97. package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
  98. package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
  99. package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
  100. package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
  101. package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
  102. package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
  103. package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
  104. package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
  105. package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
  106. package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
  107. package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
  108. package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
  109. package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
  110. package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
  111. package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
  112. package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
  113. package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
  114. package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
  115. package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
  116. package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
  117. package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
  118. package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
  119. package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
  120. package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
  121. package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
  122. package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
  123. package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
  124. package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
  125. package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
  126. package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
  127. package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
  128. package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
  129. package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
  130. package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
  131. package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
  132. package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
  133. package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
  134. package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
  135. package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
  136. package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
  137. package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
  138. package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
  139. package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
  140. package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
  141. package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
  142. package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
  143. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
  144. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
  145. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
  146. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
  147. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
  148. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
  149. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
  150. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
  151. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
  152. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
  153. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
  154. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
  155. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
  156. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
  157. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
  158. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
  159. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
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  161. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
  162. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
  163. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
  164. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
  165. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
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  167. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
  168. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
  169. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
  170. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
  171. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
  172. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
  173. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
  174. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
  175. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
  176. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
  177. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
  178. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
  179. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
  180. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
  181. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
  182. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
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  186. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
  187. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
  188. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
  189. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
  190. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
  191. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
  192. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
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  195. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
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  239. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/agents.py +1767 -0
  240. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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  243. package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
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  430. package/package.json +45 -0
@@ -0,0 +1,214 @@
1
+ import { spawn } from "node:child_process";
2
+ import http from "node:http";
3
+
4
+ import { ankiAutoStart, ankiConnectUrl, ankiStartTimeoutMs, quiet } from "./runtime.mjs";
5
+
6
+ export function isAnkiTool(payload) {
7
+ const toolName = String(payload.tool_name || payload.toolName || payload.name || "");
8
+ if (/^mcp_anki(?:-mcp)?_/.test(toolName)) return true;
9
+ const fields = [
10
+ payload.tool_name,
11
+ payload.toolName,
12
+ payload.name,
13
+ payload.server_name,
14
+ payload.serverName,
15
+ payload.mcp_server_name,
16
+ payload.mcpServerName,
17
+ payload.tool?.name,
18
+ ]
19
+ .filter(Boolean)
20
+ .join(" ")
21
+ .toLowerCase();
22
+ return /\banki\b/.test(fields);
23
+ }
24
+
25
+ export function ankiConnectReady(timeoutMs = 800) {
26
+ return new Promise((resolve) => {
27
+ const body = JSON.stringify({ action: "version", version: 6 });
28
+ const request = http.request(
29
+ ankiConnectUrl,
30
+ {
31
+ method: "POST",
32
+ timeout: timeoutMs,
33
+ headers: {
34
+ "Content-Type": "application/json",
35
+ "Content-Length": Buffer.byteLength(body),
36
+ },
37
+ },
38
+ (response) => {
39
+ let text = "";
40
+ response.setEncoding("utf8");
41
+ response.on("data", (chunk) => {
42
+ text += chunk;
43
+ });
44
+ response.on("end", () => {
45
+ try {
46
+ const parsed = JSON.parse(text || "{}");
47
+ resolve(response.statusCode === 200 && parsed.error == null && parsed.result != null);
48
+ } catch {
49
+ resolve(false);
50
+ }
51
+ });
52
+ },
53
+ );
54
+ request.on("timeout", () => {
55
+ request.destroy();
56
+ resolve(false);
57
+ });
58
+ request.on("error", () => resolve(false));
59
+ request.write(body);
60
+ request.end();
61
+ });
62
+ }
63
+
64
+ function runProcess(command, args, timeoutMs) {
65
+ return new Promise((resolve) => {
66
+ let child;
67
+ try {
68
+ child = spawn(command, args, { windowsHide: true, stdio: ["ignore", "ignore", "pipe"] });
69
+ } catch (error) {
70
+ resolve({ ok: false, message: error instanceof Error ? error.message : String(error) });
71
+ return;
72
+ }
73
+
74
+ let stderr = "";
75
+ const timer = setTimeout(() => {
76
+ child.kill();
77
+ resolve({ ok: false, timedOut: true, message: stderr.trim() });
78
+ }, timeoutMs);
79
+
80
+ child.stderr?.setEncoding("utf8");
81
+ child.stderr?.on("data", (chunk) => {
82
+ stderr += chunk;
83
+ });
84
+ child.on("error", (error) => {
85
+ clearTimeout(timer);
86
+ resolve({ ok: false, message: error instanceof Error ? error.message : String(error) });
87
+ });
88
+ child.on("exit", (code) => {
89
+ clearTimeout(timer);
90
+ resolve({ ok: code === 0, message: stderr.trim() });
91
+ });
92
+ });
93
+ }
94
+
95
+ export async function launchAnki() {
96
+ if (process.platform === "win32") {
97
+ const script = String.raw`
98
+ $ErrorActionPreference = "SilentlyContinue"
99
+ $programFilesX86 = [Environment]::GetEnvironmentVariable("ProgramFiles(x86)")
100
+ $paths = @(
101
+ "$env:LOCALAPPDATA\Programs\Anki\anki.exe",
102
+ "$env:ProgramFiles\Anki\anki.exe",
103
+ $(if ($programFilesX86) { Join-Path $programFilesX86 "Anki\anki.exe" })
104
+ )
105
+ $running = (Get-Process -Name "anki" -ErrorAction SilentlyContinue | Select-Object -First 1) -or (Get-Process | Where-Object { $_.MainWindowTitle -match "Anki" } | Select-Object -First 1)
106
+ if (-not $running) {
107
+ $ankiPath = $paths | Where-Object { $_ -and (Test-Path $_) } | Select-Object -First 1
108
+ if ($ankiPath) {
109
+ Start-Process -FilePath $ankiPath -WindowStyle Minimized
110
+ } else {
111
+ Write-Error "anki.exe not found in standard paths"
112
+ exit 2
113
+ }
114
+ }
115
+ $code = @"
116
+ using System;
117
+ using System.Runtime.InteropServices;
118
+ public class Win32Anki {
119
+ [DllImport("user32.dll")]
120
+ [return: MarshalAs(UnmanagedType.Bool)]
121
+ public static extern bool ShowWindow(IntPtr hWnd, int nCmdShow);
122
+ }
123
+ "@
124
+ try { Add-Type -TypeDefinition $code -ErrorAction SilentlyContinue } catch { }
125
+
126
+ $stopwatch = [System.Diagnostics.Stopwatch]::StartNew()
127
+ $ankiReady = $false
128
+ $windowMinimized = $false
129
+ $ankiWindow = $null
130
+ while ($stopwatch.Elapsed.TotalSeconds -lt 20) {
131
+ if (-not $ankiReady) {
132
+ try {
133
+ Invoke-RestMethod -Uri "http://127.0.0.1:8765" -Method Get -TimeoutSec 1 -ErrorAction Stop | Out-Null
134
+ $ankiReady = $true
135
+ } catch { }
136
+ }
137
+
138
+ if (-not $windowMinimized) {
139
+ $ankiWindow = Get-Process | Where-Object { $_.MainWindowTitle -match "Anki" -and $_.MainWindowHandle -ne [IntPtr]::Zero } | Select-Object -First 1
140
+ if ($ankiWindow) {
141
+ try {
142
+ [Win32Anki]::ShowWindow($ankiWindow.MainWindowHandle, 6) | Out-Null
143
+ $windowMinimized = $true
144
+ } catch { }
145
+ }
146
+ }
147
+
148
+ if ($ankiReady -and $windowMinimized) {
149
+ Start-Sleep -Milliseconds 500
150
+ if ($ankiWindow) {
151
+ try { [Win32Anki]::ShowWindow($ankiWindow.MainWindowHandle, 6) | Out-Null } catch { }
152
+ }
153
+ break
154
+ }
155
+ Start-Sleep -Milliseconds 200
156
+ }
157
+ exit 0
158
+ `;
159
+ const result = await runProcess(
160
+ "powershell.exe",
161
+ ["-NoProfile", "-ExecutionPolicy", "Bypass", "-Command", script],
162
+ ankiStartTimeoutMs + 1000,
163
+ );
164
+ if (!result.ok && result.message) console.error(result.message);
165
+ return result.ok;
166
+ }
167
+
168
+ if (process.platform === "darwin") {
169
+ const result = await runProcess("open", ["-g", "-j", "-a", "Anki"], 3000);
170
+ if (!result.ok && result.message) console.error(result.message);
171
+ return result.ok;
172
+ }
173
+
174
+ try {
175
+ const child = spawn("anki", [], { detached: true, stdio: "ignore" });
176
+ child.unref();
177
+ return true;
178
+ } catch (error) {
179
+ console.error(`Could not start Anki: ${error instanceof Error ? error.message : String(error)}`);
180
+ return false;
181
+ }
182
+ }
183
+
184
+ export async function waitForAnkiConnect(timeoutMs) {
185
+ const started = Date.now();
186
+ while (Date.now() - started < timeoutMs) {
187
+ if (await ankiConnectReady()) return true;
188
+ await new Promise((resolve) => setTimeout(resolve, 350));
189
+ }
190
+ return false;
191
+ }
192
+
193
+ export async function ensureAnkiBefore(payload) {
194
+ if (!isAnkiTool(payload)) return quiet();
195
+ if (await ankiConnectReady()) return quiet();
196
+ if (!ankiAutoStart) return quiet();
197
+
198
+ console.error("AnkiConnect is not ready. Trying a bounded Anki preflight before Anki MCP tool use.");
199
+ const launched = await launchAnki();
200
+ const ready = launched ? await waitForAnkiConnect(ankiStartTimeoutMs) : false;
201
+
202
+ if (ready) {
203
+ return {
204
+ systemMessage: "Anki foi aberto; AnkiConnect esta pronto para usar o MCP.",
205
+ suppressOutput: true,
206
+ };
207
+ }
208
+
209
+ return {
210
+ systemMessage:
211
+ "AnkiConnect nao respondeu; a ferramenta Anki MCP pode falhar. Abra o Anki Desktop e confira o add-on AnkiConnect.",
212
+ suppressOutput: true,
213
+ };
214
+ }
@@ -0,0 +1,143 @@
1
+ import fs from "node:fs/promises";
2
+ import os from "node:os";
3
+ import path from "node:path";
4
+ import { fileURLToPath, pathToFileURL } from "node:url";
5
+
6
+ import { normalizePayloadForRuntime, renderAntigravityOutput } from "./adapters/antigravity.mjs";
7
+ import { ensureAnkiBefore } from "./anki_preflight.mjs";
8
+ import { diagnose } from "./diagnostics.mjs";
9
+ import {
10
+ captureAgentDirectiveAfterTool,
11
+ guardAgentDirectiveBeforeTool,
12
+ injectAgentDirectiveBeforeAgent,
13
+ validateAgentDirectiveAfterAgent,
14
+ } from "./fsm_directive.mjs";
15
+ import { recordHookError } from "./hook_errors.mjs";
16
+ import { quiet, readPayloadResult, writeJson } from "./runtime.mjs";
17
+ import { captureAfterTool } from "./telemetry_capture.mjs";
18
+ import { guardVaultBefore } from "./vault_guard.mjs";
19
+
20
+ const STATUS_SCHEMA = "medical-notes-workbench.antigravity-hook-status.v1";
21
+ const STATUS_DIR = path.join(appHomeDir(), "antigravity-hooks");
22
+ const STATUS_FILE = path.join(STATUS_DIR, "status.json");
23
+ const HOOK_PLUGIN_ROOT = path.resolve(path.dirname(fileURLToPath(import.meta.url)), "..", "..", "..");
24
+
25
+ function appHomeDir() {
26
+ return process.env.MEDNOTES_HOME || path.join(os.homedir(), ".mednotes");
27
+ }
28
+
29
+ function compactPath(value) {
30
+ const text = String(value || "");
31
+ if (!text) return "";
32
+ const home = os.homedir();
33
+ return text.startsWith(home) ? `~${text.slice(home.length)}` : text;
34
+ }
35
+
36
+ async function readStatus() {
37
+ try {
38
+ const parsed = JSON.parse(await fs.readFile(STATUS_FILE, "utf8"));
39
+ return parsed && typeof parsed === "object" ? parsed : {};
40
+ } catch {
41
+ return {};
42
+ }
43
+ }
44
+
45
+ async function recordHookStatus(mode, payload, output, status = "executed") {
46
+ try {
47
+ const previous = await readStatus();
48
+ const now = new Date().toISOString();
49
+ const previousByMode = previous.by_mode && typeof previous.by_mode === "object" ? previous.by_mode : {};
50
+ const previousLast = previous.last_hook && typeof previous.last_hook === "object" ? previous.last_hook : {};
51
+ const nextByMode = {
52
+ ...previousByMode,
53
+ [mode || "unknown"]: Number(previousByMode[mode || "unknown"] || 0) + 1,
54
+ };
55
+ const eventName = String(payload?.hook_event_name || "");
56
+ const toolName = String(payload?.tool_name || "");
57
+ const cwd = compactPath(payload?.cwd || "");
58
+ const observedToolName = toolName || String(previousLast.tool_name || "");
59
+ const observedCwd = cwd || String(previousLast.cwd || "");
60
+ const next = {
61
+ schema: STATUS_SCHEMA,
62
+ status,
63
+ updated_at: now,
64
+ total_invocations: Number(previous.total_invocations || 0) + 1,
65
+ by_mode: nextByMode,
66
+ last_hook: {
67
+ mode: mode || "unknown",
68
+ hook_event_name: eventName,
69
+ tool_name: observedToolName,
70
+ decision: String(output?.decision || ""),
71
+ cwd: observedCwd,
72
+ plugin_root: compactPath(HOOK_PLUGIN_ROOT),
73
+ conversation_id_seen: Boolean(payload?.session_id),
74
+ transcript_path_seen: Boolean(payload?.transcript_path),
75
+ current_payload_tool_name_seen: Boolean(toolName),
76
+ current_payload_cwd_seen: Boolean(cwd),
77
+ },
78
+ note: "Redacted operational heartbeat only. No command text, note content, raw chat, markdown, HTML, token or secret is stored here.",
79
+ };
80
+ await fs.mkdir(STATUS_DIR, { recursive: true });
81
+ const tmp = `${STATUS_FILE}.tmp`;
82
+ await fs.writeFile(tmp, `${JSON.stringify(next, null, 2)}\n`, "utf8");
83
+ await fs.rename(tmp, STATUS_FILE);
84
+ } catch {
85
+ // Hook status is observability only. Never let it change hook behavior.
86
+ }
87
+ }
88
+
89
+ export async function dispatch(mode, payload) {
90
+ if (mode === "ensure-anki-before") return ensureAnkiBefore(payload);
91
+ if (mode === "guard-vault-before") return guardVaultBefore(payload);
92
+ if (mode === "capture-after-tool") return captureAfterTool(payload);
93
+ if (mode === "capture-agent-directive-after-tool") return captureAgentDirectiveAfterTool(payload);
94
+ if (mode === "inject-agent-directive-before-agent") return injectAgentDirectiveBeforeAgent(payload);
95
+ if (mode === "guard-agent-directive-before-tool") return guardAgentDirectiveBeforeTool(payload);
96
+ if (mode === "validate-agent-directive-after-agent") return validateAgentDirectiveAfterAgent(payload);
97
+ return quiet();
98
+ }
99
+
100
+ export async function run(argv = process.argv.slice(2)) {
101
+ const mode = argv[0] || "";
102
+ if (mode === "diagnose") {
103
+ writeJson(await diagnose());
104
+ return;
105
+ }
106
+
107
+ const payloadResult = await readPayloadResult();
108
+ if (payloadResult.error) {
109
+ await recordHookError({
110
+ mode,
111
+ type: payloadResult.error.type,
112
+ message: payloadResult.error.message,
113
+ details: payloadResult.error.details,
114
+ });
115
+ }
116
+ const payload = await normalizePayloadForRuntime(payloadResult.payload, mode);
117
+ const result = await dispatch(mode, payload);
118
+ const output = payload.antigravity_payload_seen ? renderAntigravityOutput(mode, result, payload) : result;
119
+ // Status heartbeat is observability only and fail-open inside recordHookStatus,
120
+ // but tests and diagnostics depend on it being flushed before the one-shot
121
+ // hook process exits.
122
+ await recordHookStatus(mode, payload, output);
123
+ writeJson(output);
124
+ }
125
+
126
+ export async function main(argv = process.argv.slice(2)) {
127
+ try {
128
+ await run(argv);
129
+ } catch (error) {
130
+ await recordHookError({
131
+ mode: argv[0] || "",
132
+ type: "hook_main_error",
133
+ error,
134
+ });
135
+ console.error(`mednotes hook failed open: ${error instanceof Error ? error.message : String(error)}`);
136
+ writeJson(quiet());
137
+ process.exitCode = 0;
138
+ }
139
+ }
140
+
141
+ if (process.argv[1] && import.meta.url === pathToFileURL(process.argv[1]).href) {
142
+ await main();
143
+ }
@@ -0,0 +1,11 @@
1
+ import { ankiAutoStart, ankiConnectUrl, ankiStartTimeoutMs, stdinHardTimeoutMs, stdinTimeoutMs } from "./runtime.mjs";
2
+
3
+ export async function diagnose() {
4
+ return {
5
+ anki_connect_url: ankiConnectUrl,
6
+ anki_auto_start: ankiAutoStart,
7
+ stdin_timeout_ms: stdinTimeoutMs,
8
+ stdin_hard_timeout_ms: stdinHardTimeoutMs,
9
+ anki_start_timeout_ms: ankiStartTimeoutMs,
10
+ };
11
+ }
@@ -0,0 +1,160 @@
1
+ // Pure hook-domain contract logic. This module validates and renders FSM
2
+ // directives, but receives runtime-specific redaction context from adapters.
3
+ export const DIRECTIVE_SCHEMA = "medical-notes-workbench.agent-directive.v1";
4
+ export const WORKFLOW_RUN_RECORD_SCHEMA = "medical-notes-workbench.workflow-run-record.v1";
5
+ export const KNOWN_FSM_SCHEMAS = new Set([
6
+ "medical-notes-workbench.fix-wiki-fsm-result.v1",
7
+ "medical-notes-workbench.flashcards-fsm-result.v1",
8
+ "medical-notes-workbench.link-fsm-result.v1",
9
+ "medical-notes-workbench.link-related-fsm-result.v1",
10
+ "medical-notes-workbench.process-chats-fsm-result.v1",
11
+ "medical-notes-workbench.setup-fsm-result.v1",
12
+ "medical-notes-workbench.history-fsm-result.v1",
13
+ ]);
14
+ const KNOWN_DIRECTIVE_CARRIER_SCHEMAS = new Set([
15
+ ...KNOWN_FSM_SCHEMAS,
16
+ "medical-notes-workbench.fix-wiki-agent-stdout-report.v1",
17
+ "medical-notes-workbench.plan-output-receipt.v1",
18
+ "medical-notes-workbench.specialist-task-runner-result.v1",
19
+ "medical-notes-workbench.style-rewrite-atomic-apply-agent-stdout.v1",
20
+ ]);
21
+
22
+ const MAX_CONTEXT_CHARS = 1800;
23
+
24
+ export function isOfficialWorkflowPayload(value) {
25
+ if (!value || typeof value !== "object" || Array.isArray(value)) return false;
26
+ // Run records are local observability snapshots. They may contain a copied
27
+ // directive for audit, but they are not the live FSM payload for enforcement.
28
+ if (String(value.schema || "") === WORKFLOW_RUN_RECORD_SCHEMA) return false;
29
+ if (!KNOWN_FSM_SCHEMAS.has(String(value.schema || ""))) return false;
30
+ return isAgentDirective(value.agent_directive);
31
+ }
32
+
33
+ export function isAgentDirectiveCarrierPayload(value) {
34
+ if (!value || typeof value !== "object" || Array.isArray(value)) return false;
35
+ // Carriers may be official CLI stdout/receipt contracts, but run records stay
36
+ // observability-only snapshots and must not inject live hook state.
37
+ if (String(value.schema || "") === WORKFLOW_RUN_RECORD_SCHEMA) return false;
38
+ if (!KNOWN_DIRECTIVE_CARRIER_SCHEMAS.has(String(value.schema || ""))) return false;
39
+ return isAgentDirective(value.agent_directive);
40
+ }
41
+
42
+ export function isAgentDirective(value) {
43
+ if (!value || typeof value !== "object" || Array.isArray(value)) return false;
44
+ const control = value.control;
45
+ const capabilities = control && typeof control === "object" ? control.capabilities : null;
46
+ if (
47
+ !(
48
+ value.schema === DIRECTIVE_SCHEMA &&
49
+ typeof value.workflow === "string" &&
50
+ typeof value.run_id === "string" &&
51
+ control &&
52
+ typeof control === "object" &&
53
+ typeof control.status === "string" &&
54
+ typeof control.state === "string" &&
55
+ capabilities &&
56
+ typeof capabilities === "object" &&
57
+ typeof capabilities.continue === "boolean" &&
58
+ typeof capabilities.final_report === "boolean"
59
+ )
60
+ ) {
61
+ return false;
62
+ }
63
+ return directiveStatusShapeIsValid(control, capabilities);
64
+ }
65
+
66
+ export function contextFromDirective(directive) {
67
+ if (!isAgentDirective(directive)) return "";
68
+ const control = directive.control || {};
69
+ const capabilities = control.capabilities || {};
70
+ const effects = Array.isArray(control.effects)
71
+ ? control.effects
72
+ .map((effect) => String(effect?.kind || ""))
73
+ .filter(Boolean)
74
+ .join(", ")
75
+ : "";
76
+ const limits = control.limits && typeof control.limits === "object" ? control.limits : {};
77
+ const lines = [
78
+ "MEDNOTES FSM CONTEXT",
79
+ `workflow: ${safeLine(directive.workflow)}`,
80
+ `status: ${safeLine(control.status)}`,
81
+ `state: ${safeLine(control.state)}`,
82
+ `capabilities: continue=${String(Boolean(capabilities.continue))}; final_report=${String(Boolean(capabilities.final_report))}`,
83
+ ];
84
+ if (effects) lines.push(`effects: ${safeLine(effects)}`);
85
+ lines.push(
86
+ `limits: raw_content=${String(limits.raw_content !== false)}; absolute_paths=${String(limits.absolute_paths !== false)}; ad_hoc_scripts=${String(limits.ad_hoc_scripts !== false)}`,
87
+ );
88
+ const resume = safeLine(control.resume || "");
89
+ if (resume) lines.push(`resume: ${resume}`);
90
+ for (const instruction of Array.isArray(directive.instructions) ? directive.instructions.slice(0, 12) : []) {
91
+ const line = safeLine(instruction);
92
+ if (line) lines.push(`instruction: ${line}`);
93
+ }
94
+ const context = lines.join("\n");
95
+ return context.length <= MAX_CONTEXT_CHARS ? context : `${context.slice(0, MAX_CONTEXT_CHARS - 3).trimEnd()}...`;
96
+ }
97
+
98
+ export function contextFromWorkflowIntent(intent) {
99
+ const workflow = safeLine(intent?.workflow || "");
100
+ if (!workflow) return "";
101
+ const lines = [
102
+ "MEDNOTES WORKFLOW INTENT",
103
+ `workflow: ${workflow}`,
104
+ "stage: before_workflow_payload",
105
+ "instruction: load only the official packaged workflow skill if needed.",
106
+ "instruction: follow the official public workflow route, then wait for official JSON.",
107
+ "instruction: do not probe permissions, list directories, call MCP, invoke subagents, schedule timers or self-debug before the workflow payload.",
108
+ "instruction: if a tool schema fails, retry the same necessary tool without invented metadata arguments.",
109
+ ];
110
+ const context = lines.join("\n");
111
+ return context.length <= MAX_CONTEXT_CHARS ? context : `${context.slice(0, MAX_CONTEXT_CHARS - 3).trimEnd()}...`;
112
+ }
113
+
114
+ export function controlStatus(directive) {
115
+ return String(directive?.control?.status || "");
116
+ }
117
+
118
+ export function directiveAllowsFinalReport(directive) {
119
+ return isAgentDirective(directive) && Boolean(directive?.control?.capabilities?.final_report);
120
+ }
121
+
122
+ export function directiveAllowsPauseReport(directive) {
123
+ const capabilities = directive?.control?.capabilities;
124
+ if (capabilities?.continue !== false) return false;
125
+ const status = controlStatus(directive);
126
+ return status === "waiting_external" || status === "waiting_human" || status === "blocked" || status === "failed";
127
+ }
128
+
129
+ export function limitIsFalse(directive, name) {
130
+ return directive?.control?.limits?.[name] === false;
131
+ }
132
+
133
+ function safeLine(value) {
134
+ return String(value || "")
135
+ .replace(/\s+/g, " ")
136
+ .replace(/\/(?:private\/)?(?:var|tmp|Users|home)\/[^\s]+/g, "[path]")
137
+ .slice(0, 240)
138
+ .trim();
139
+ }
140
+
141
+ function directiveStatusShapeIsValid(control, capabilities) {
142
+ const status = String(control.status || "");
143
+ const effects = Array.isArray(control.effects) ? control.effects : [];
144
+ const blockers = Array.isArray(control.blockers)
145
+ ? control.blockers.map((item) => String(item || "").trim()).filter(Boolean)
146
+ : [];
147
+ const resume = String(control.resume || "").trim();
148
+ if (status === "waiting_agent") {
149
+ if (capabilities.continue !== true) return false;
150
+ if (capabilities.final_report !== false) return false;
151
+ if (!effects.length) return false;
152
+ }
153
+ if (status === "completed" || status === "completed_with_warnings") {
154
+ if (capabilities.final_report !== true) return false;
155
+ }
156
+ if (["waiting_human", "waiting_external", "blocked", "failed"].includes(status)) {
157
+ if (!blockers.length && !resume) return false;
158
+ }
159
+ return true;
160
+ }