mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
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- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
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- package/package.json +45 -0
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import crypto from "node:crypto";
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const SCHEMA = "medical-notes-workbench.agent-hook-error.v1";
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error_id: crypto.randomUUID ? crypto.randomUUID() : crypto.randomBytes(16).toString("hex"),
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hook_event_name: String(safePayload.hook_event_name || ""),
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tool_name: String(safePayload.tool_name || safePayload.toolName || safePayload.name || ""),
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if (["token", "auth_token", "api_key", "apikey", "secret", "password", "authorization", "bearer"].includes(lower)) {
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} else if (["content", "markdown", "html", "raw_chat", "note_text"].includes(lower)) {
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"$1$2[redacted]",
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text = text.replace(/\b[A-Za-z0-9_=-]{36,}\b/g, "[redacted-token]");
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const text = String(value || "");
|
|
119
|
+
return text.length > maxChars ? text.slice(text.length - maxChars) : text;
|
|
120
|
+
}
|
|
@@ -0,0 +1,114 @@
|
|
|
1
|
+
import fs from "node:fs";
|
|
2
|
+
import fsp from "node:fs/promises";
|
|
3
|
+
import path from "node:path";
|
|
4
|
+
|
|
5
|
+
import { clampInt } from "./runtime.mjs";
|
|
6
|
+
|
|
7
|
+
function retentionHours(kind) {
|
|
8
|
+
const specific =
|
|
9
|
+
kind === "error"
|
|
10
|
+
? process.env.MEDNOTES_HOOK_ERROR_RETENTION_HOURS
|
|
11
|
+
: process.env.MEDNOTES_HOOK_EVENT_RETENTION_HOURS;
|
|
12
|
+
return clampInt(specific ?? process.env.MEDNOTES_HOOK_RETENTION_HOURS, 24, 1, 168);
|
|
13
|
+
}
|
|
14
|
+
|
|
15
|
+
function retentionPolicy(kind) {
|
|
16
|
+
return {
|
|
17
|
+
maxFiles: clampInt(
|
|
18
|
+
kind === "error" ? process.env.MEDNOTES_HOOK_ERROR_MAX_FILES : process.env.MEDNOTES_HOOK_EVENT_MAX_FILES,
|
|
19
|
+
kind === "error" ? 25 : 50,
|
|
20
|
+
0,
|
|
21
|
+
1000,
|
|
22
|
+
),
|
|
23
|
+
retentionHours: retentionHours(kind),
|
|
24
|
+
};
|
|
25
|
+
}
|
|
26
|
+
|
|
27
|
+
export async function pruneHookEventFiles(dir) {
|
|
28
|
+
await pruneJsonFiles(dir, retentionPolicy("event"));
|
|
29
|
+
}
|
|
30
|
+
|
|
31
|
+
export async function pruneHookErrorFiles(dir) {
|
|
32
|
+
await pruneJsonFiles(dir, retentionPolicy("error"));
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
export function pruneHookEventFilesSync(dir) {
|
|
36
|
+
pruneJsonFilesSync(dir, retentionPolicy("event"));
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
async function pruneJsonFiles(dir, policy) {
|
|
40
|
+
try {
|
|
41
|
+
const entries = await fsp.readdir(dir, { withFileTypes: true });
|
|
42
|
+
const files = [];
|
|
43
|
+
for (const entry of entries) {
|
|
44
|
+
if (!entry.isFile() || !entry.name.endsWith(".json")) continue;
|
|
45
|
+
const filePath = path.join(dir, entry.name);
|
|
46
|
+
try {
|
|
47
|
+
const stat = await fsp.stat(filePath);
|
|
48
|
+
files.push({ path: filePath, name: entry.name, mtimeMs: stat.mtimeMs });
|
|
49
|
+
} catch {
|
|
50
|
+
// Best effort only.
|
|
51
|
+
}
|
|
52
|
+
}
|
|
53
|
+
await pruneEntries(files, policy, (filePath) => fsp.unlink(filePath));
|
|
54
|
+
} catch {
|
|
55
|
+
// Retention cleanup is observability-only. Never fail a hook because of it.
|
|
56
|
+
}
|
|
57
|
+
}
|
|
58
|
+
|
|
59
|
+
function pruneJsonFilesSync(dir, policy) {
|
|
60
|
+
try {
|
|
61
|
+
const files = [];
|
|
62
|
+
for (const name of fs.readdirSync(dir)) {
|
|
63
|
+
if (!name.endsWith(".json")) continue;
|
|
64
|
+
const filePath = path.join(dir, name);
|
|
65
|
+
try {
|
|
66
|
+
const stat = fs.statSync(filePath);
|
|
67
|
+
if (stat.isFile()) files.push({ path: filePath, name, mtimeMs: stat.mtimeMs });
|
|
68
|
+
} catch {
|
|
69
|
+
// Best effort only.
|
|
70
|
+
}
|
|
71
|
+
}
|
|
72
|
+
pruneEntriesSync(files, policy, (filePath) => fs.unlinkSync(filePath));
|
|
73
|
+
} catch {
|
|
74
|
+
// Retention cleanup is observability-only. Never fail a hook because of it.
|
|
75
|
+
}
|
|
76
|
+
}
|
|
77
|
+
|
|
78
|
+
async function pruneEntries(files, policy, unlink) {
|
|
79
|
+
const victims = retentionVictims(files, policy);
|
|
80
|
+
for (const item of victims) {
|
|
81
|
+
try {
|
|
82
|
+
await unlink(item.path);
|
|
83
|
+
} catch {
|
|
84
|
+
// Another process may have cleaned it already.
|
|
85
|
+
}
|
|
86
|
+
}
|
|
87
|
+
}
|
|
88
|
+
|
|
89
|
+
function pruneEntriesSync(files, policy, unlink) {
|
|
90
|
+
const victims = retentionVictims(files, policy);
|
|
91
|
+
for (const item of victims) {
|
|
92
|
+
try {
|
|
93
|
+
unlink(item.path);
|
|
94
|
+
} catch {
|
|
95
|
+
// Another process may have cleaned it already.
|
|
96
|
+
}
|
|
97
|
+
}
|
|
98
|
+
}
|
|
99
|
+
|
|
100
|
+
function retentionVictims(files, policy) {
|
|
101
|
+
const cutoffMs = Date.now() - policy.retentionHours * 60 * 60 * 1000;
|
|
102
|
+
const sorted = [...files].sort((left, right) => right.mtimeMs - left.mtimeMs || right.name.localeCompare(left.name));
|
|
103
|
+
const victims = [];
|
|
104
|
+
const survivors = [];
|
|
105
|
+
for (const item of sorted) {
|
|
106
|
+
if (item.mtimeMs < cutoffMs) {
|
|
107
|
+
victims.push(item);
|
|
108
|
+
} else {
|
|
109
|
+
survivors.push(item);
|
|
110
|
+
}
|
|
111
|
+
}
|
|
112
|
+
victims.push(...survivors.slice(Math.max(0, policy.maxFiles)));
|
|
113
|
+
return victims;
|
|
114
|
+
}
|
|
@@ -0,0 +1,174 @@
|
|
|
1
|
+
export const ankiConnectUrl = (process.env.ANKI_CONNECT_URL || "http://127.0.0.1:8765").replace(/\/+$/, "");
|
|
2
|
+
export const stdinTimeoutMs = clampInt(process.env.MEDNOTES_HOOK_STDIN_TIMEOUT_MS, 250, 100, 2000);
|
|
3
|
+
export const stdinHardTimeoutMs = clampInt(process.env.MEDNOTES_HOOK_STDIN_HARD_TIMEOUT_MS, 2500, 250, 15000);
|
|
4
|
+
export const ankiStartTimeoutMs = clampInt(process.env.MEDNOTES_ANKI_START_TIMEOUT_MS, 8000, 1000, 15000);
|
|
5
|
+
export const ankiAutoStart = /^(1|true|yes)$/i.test(process.env.MEDNOTES_ANKI_AUTO_START || "");
|
|
6
|
+
const EAGER_PARSE_MAX_CHARS = 64 * 1024;
|
|
7
|
+
|
|
8
|
+
export function clampInt(value, fallback, min, max) {
|
|
9
|
+
const parsed = Number(value);
|
|
10
|
+
if (!Number.isFinite(parsed)) return fallback;
|
|
11
|
+
return Math.min(max, Math.max(min, Math.trunc(parsed)));
|
|
12
|
+
}
|
|
13
|
+
|
|
14
|
+
export function quiet() {
|
|
15
|
+
return { suppressOutput: true };
|
|
16
|
+
}
|
|
17
|
+
|
|
18
|
+
export function allow(extra = {}) {
|
|
19
|
+
return { decision: "allow", ...extra };
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
export function deny(reason, extra = {}) {
|
|
23
|
+
return {
|
|
24
|
+
decision: "deny",
|
|
25
|
+
reason: String(reason || "Operação bloqueada pela política de segurança do vault."),
|
|
26
|
+
...extra,
|
|
27
|
+
};
|
|
28
|
+
}
|
|
29
|
+
|
|
30
|
+
export function writeJson(output) {
|
|
31
|
+
process.stdout.write(JSON.stringify(output || quiet()));
|
|
32
|
+
}
|
|
33
|
+
|
|
34
|
+
export function tryParseJson(text) {
|
|
35
|
+
try {
|
|
36
|
+
return { ok: true, value: JSON.parse(text || "{}") };
|
|
37
|
+
} catch {
|
|
38
|
+
return { ok: false, value: {} };
|
|
39
|
+
}
|
|
40
|
+
}
|
|
41
|
+
|
|
42
|
+
export async function readPayload(timeoutMs = stdinTimeoutMs) {
|
|
43
|
+
return (await readPayloadResult(timeoutMs)).payload;
|
|
44
|
+
}
|
|
45
|
+
|
|
46
|
+
export function readPayloadResult(timeoutMs = stdinTimeoutMs, hardTimeoutMs = stdinHardTimeoutMs) {
|
|
47
|
+
return new Promise((resolve) => {
|
|
48
|
+
let settled = false;
|
|
49
|
+
let text = "";
|
|
50
|
+
let idleTimer;
|
|
51
|
+
let hardTimer;
|
|
52
|
+
|
|
53
|
+
const finish = (payload, error = null) => {
|
|
54
|
+
if (settled) return;
|
|
55
|
+
settled = true;
|
|
56
|
+
clearTimeout(idleTimer);
|
|
57
|
+
clearTimeout(hardTimer);
|
|
58
|
+
try {
|
|
59
|
+
process.stdin.pause();
|
|
60
|
+
process.stdin.unref?.();
|
|
61
|
+
process.stdin.removeAllListeners("data");
|
|
62
|
+
process.stdin.removeAllListeners("end");
|
|
63
|
+
process.stdin.removeAllListeners("error");
|
|
64
|
+
} catch {
|
|
65
|
+
// Best effort: the hook must still return JSON even with unusual stdin.
|
|
66
|
+
}
|
|
67
|
+
resolve({
|
|
68
|
+
payload: payload && typeof payload === "object" ? payload : {},
|
|
69
|
+
error,
|
|
70
|
+
});
|
|
71
|
+
};
|
|
72
|
+
|
|
73
|
+
const parseOrError = (raw, options = {}) => {
|
|
74
|
+
const parsed = tryParseJson(raw.trim());
|
|
75
|
+
if (parsed.ok) {
|
|
76
|
+
finish(parsed.value);
|
|
77
|
+
} else {
|
|
78
|
+
const reason = options.reason || "unknown";
|
|
79
|
+
finish(
|
|
80
|
+
{},
|
|
81
|
+
{
|
|
82
|
+
type: "invalid_stdin_json",
|
|
83
|
+
message: "Hook stdin was not valid JSON.",
|
|
84
|
+
details: {
|
|
85
|
+
reason,
|
|
86
|
+
stdin_bytes: Buffer.byteLength(raw || "", "utf8"),
|
|
87
|
+
},
|
|
88
|
+
},
|
|
89
|
+
);
|
|
90
|
+
}
|
|
91
|
+
};
|
|
92
|
+
|
|
93
|
+
const parseWhenComplete = () => {
|
|
94
|
+
if (!shouldAttemptParse(text)) return false;
|
|
95
|
+
const parsed = tryParseJson(text.trim());
|
|
96
|
+
if (!parsed.ok) return false;
|
|
97
|
+
finish(parsed.value);
|
|
98
|
+
return true;
|
|
99
|
+
};
|
|
100
|
+
|
|
101
|
+
const handleIdleTimeout = (reason = "timeout") => {
|
|
102
|
+
if (settled) return;
|
|
103
|
+
if (!text.trim()) {
|
|
104
|
+
finish({});
|
|
105
|
+
} else if (isSmallPayload(text)) {
|
|
106
|
+
parseOrError(text, { reason });
|
|
107
|
+
} else {
|
|
108
|
+
if (parseWhenComplete()) return;
|
|
109
|
+
// Gemini can split or truncate large hook stdin. Partial large JSON is
|
|
110
|
+
// a transport limitation, not a workflow or model error to report.
|
|
111
|
+
}
|
|
112
|
+
};
|
|
113
|
+
|
|
114
|
+
const armIdleTimeout = (reason = "timeout") => {
|
|
115
|
+
clearTimeout(idleTimer);
|
|
116
|
+
idleTimer = setTimeout(() => handleIdleTimeout(reason), timeoutMs);
|
|
117
|
+
};
|
|
118
|
+
|
|
119
|
+
armIdleTimeout("timeout");
|
|
120
|
+
hardTimer = setTimeout(() => {
|
|
121
|
+
if (settled) return;
|
|
122
|
+
if (!text.trim()) {
|
|
123
|
+
finish({});
|
|
124
|
+
} else if (isSmallPayload(text)) {
|
|
125
|
+
parseOrError(text, { reason: "hard_timeout" });
|
|
126
|
+
} else if (parseWhenComplete()) {
|
|
127
|
+
return;
|
|
128
|
+
} else {
|
|
129
|
+
finish({});
|
|
130
|
+
}
|
|
131
|
+
}, hardTimeoutMs);
|
|
132
|
+
|
|
133
|
+
if (process.stdin.isTTY) {
|
|
134
|
+
finish({});
|
|
135
|
+
return;
|
|
136
|
+
}
|
|
137
|
+
|
|
138
|
+
process.stdin.setEncoding("utf8");
|
|
139
|
+
process.stdin.on("data", (chunk) => {
|
|
140
|
+
text += chunk;
|
|
141
|
+
armIdleTimeout("inactivity_timeout");
|
|
142
|
+
parseWhenComplete();
|
|
143
|
+
});
|
|
144
|
+
process.stdin.on("end", () => {
|
|
145
|
+
if (text.trim()) {
|
|
146
|
+
parseOrError(text, { reason: "end" });
|
|
147
|
+
} else {
|
|
148
|
+
finish({});
|
|
149
|
+
}
|
|
150
|
+
});
|
|
151
|
+
process.stdin.on("error", (error) =>
|
|
152
|
+
finish(
|
|
153
|
+
{},
|
|
154
|
+
{
|
|
155
|
+
type: "stdin_read_error",
|
|
156
|
+
message: error instanceof Error ? error.message : String(error || "Hook stdin read failed."),
|
|
157
|
+
details: { stdin_bytes: Buffer.byteLength(text || "", "utf8") },
|
|
158
|
+
},
|
|
159
|
+
),
|
|
160
|
+
);
|
|
161
|
+
process.stdin.resume();
|
|
162
|
+
});
|
|
163
|
+
}
|
|
164
|
+
|
|
165
|
+
function shouldAttemptParse(raw) {
|
|
166
|
+
const trimmed = String(raw || "").trim();
|
|
167
|
+
if (!trimmed) return true;
|
|
168
|
+
if (isSmallPayload(trimmed)) return true;
|
|
169
|
+
return trimmed.endsWith("}") || trimmed.endsWith("]");
|
|
170
|
+
}
|
|
171
|
+
|
|
172
|
+
function isSmallPayload(raw) {
|
|
173
|
+
return String(raw || "").trim().length <= EAGER_PARSE_MAX_CHARS;
|
|
174
|
+
}
|