mednotes-opencode 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.opencode/agents/med-chat-triager.md +204 -0
- package/.opencode/agents/med-flashcard-maker.md +63 -0
- package/.opencode/agents/med-knowledge-architect.md +230 -0
- package/.opencode/agents/med-link-graph-curator.md +177 -0
- package/.opencode/agents/med-publish-guard.md +62 -0
- package/.opencode/commands/flashcards.md +25 -0
- package/.opencode/commands/mednotes/create.md +25 -0
- package/.opencode/commands/mednotes/enrich.md +27 -0
- package/.opencode/commands/mednotes/fix-wiki.md +27 -0
- package/.opencode/commands/mednotes/history.md +22 -0
- package/.opencode/commands/mednotes/link-body.md +25 -0
- package/.opencode/commands/mednotes/link-related.md +27 -0
- package/.opencode/commands/mednotes/link.md +27 -0
- package/.opencode/commands/mednotes/pdf-library.md +27 -0
- package/.opencode/commands/mednotes/process-chats.md +23 -0
- package/.opencode/commands/mednotes/setup.md +21 -0
- package/.opencode/commands/mednotes/status.md +27 -0
- package/.opencode/commands/mednotes/telemetry.md +27 -0
- package/.opencode/commands/report.md +26 -0
- package/.opencode/mednotes/AGENTS.md +57 -0
- package/.opencode/mednotes/agents/med-chat-triager.md +197 -0
- package/.opencode/mednotes/agents/med-flashcard-maker.md +56 -0
- package/.opencode/mednotes/agents/med-knowledge-architect.md +224 -0
- package/.opencode/mednotes/agents/med-link-graph-curator.md +171 -0
- package/.opencode/mednotes/agents/med-publish-guard.md +55 -0
- package/.opencode/mednotes/contracts/.gitkeep +1 -0
- package/.opencode/mednotes/contracts/agents.json +116 -0
- package/.opencode/mednotes/contracts/opencode-plugin.json +70 -0
- package/.opencode/mednotes/docs/agent-prompt-hardening.md +567 -0
- package/.opencode/mednotes/docs/agent-role-contracts.md +94 -0
- package/.opencode/mednotes/docs/anki-mcp-twenty-rules.md +214 -0
- package/.opencode/mednotes/docs/anki-templates/README.md +39 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.back.html +23 -0
- package/.opencode/mednotes/docs/anki-templates/cloze.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/qa.back.html +24 -0
- package/.opencode/mednotes/docs/anki-templates/qa.front.html +14 -0
- package/.opencode/mednotes/docs/anki-templates/style.css +182 -0
- package/.opencode/mednotes/docs/atomicity-splitting-policy.md +113 -0
- package/.opencode/mednotes/docs/extension-docs.md +40 -0
- package/.opencode/mednotes/docs/flashcard-ingestion.md +278 -0
- package/.opencode/mednotes/docs/knowledge-architect.md +208 -0
- package/.opencode/mednotes/docs/merge-policy.md +110 -0
- package/.opencode/mednotes/docs/public-vocabulary.md +104 -0
- package/.opencode/mednotes/docs/semantic-linker.md +141 -0
- package/.opencode/mednotes/docs/taxonomy-policy.md +90 -0
- package/.opencode/mednotes/docs/triage-policy.md +187 -0
- package/.opencode/mednotes/docs/vault-version-control.md +758 -0
- package/.opencode/mednotes/docs/vocabulary-db-recovery.md +58 -0
- package/.opencode/mednotes/docs/workflow-output-contract.md +779 -0
- package/.opencode/mednotes/hooks/hooks.json +79 -0
- package/.opencode/mednotes/package-lock.json +6361 -0
- package/.opencode/mednotes/package.json +15 -0
- package/.opencode/mednotes/pyproject.toml +48 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/bootstrap_windows_python_uv.ps1 +172 -0
- package/.opencode/mednotes/scripts/enrich_notes.py +23 -0
- package/.opencode/mednotes/scripts/full_reset_windows_python_uv.cmd +13 -0
- package/.opencode/mednotes/scripts/hooks/antigravity_hook_status.mjs +212 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/cli.mjs +143 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/retention.mjs +114 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook/vault_guard.mjs +624 -0
- package/.opencode/mednotes/scripts/hooks/mednotes_hook.mjs +5 -0
- package/.opencode/mednotes/scripts/mednotes/_runtime_paths.py +24 -0
- package/.opencode/mednotes/scripts/mednotes/anki_model_validator.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/capture_extension_diff.py +1562 -0
- package/.opencode/mednotes/scripts/mednotes/feedback_report.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_index.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_pipeline.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_report.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/flashcard_sources.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian/README.md +6 -0
- package/.opencode/mednotes/scripts/mednotes/obsidian_note_utils.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/pdf_library/cli.py +16 -0
- package/.opencode/mednotes/scripts/mednotes/project_fsm.py +229 -0
- package/.opencode/mednotes/scripts/mednotes/setup_telemetry_email.py +404 -0
- package/.opencode/mednotes/scripts/mednotes/sync_anki_twenty_rules.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/sync_opencode_user_config.py +36 -0
- package/.opencode/mednotes/scripts/mednotes/wiki/cli.py +20 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_graph.py +18 -0
- package/.opencode/mednotes/scripts/mednotes/wiki_tree.py +134 -0
- package/.opencode/mednotes/scripts/reset_windows_python_uv.ps1 +625 -0
- package/.opencode/mednotes/scripts/run_python.mjs +109 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_commit.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_git.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_git.py +3107 -0
- package/.opencode/mednotes/scripts/vault/vault_git.sh +18 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.ps1 +19 -0
- package/.opencode/mednotes/scripts/vault/vault_precommit.sh +18 -0
- package/.opencode/mednotes/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/.opencode/mednotes/skills/create-medical-flashcards/SKILL.md +113 -0
- package/.opencode/mednotes/skills/create-medical-note/SKILL.md +90 -0
- package/.opencode/mednotes/skills/enrich-medical-note/SKILL.md +120 -0
- package/.opencode/mednotes/skills/fix-medical-wiki/SKILL.md +559 -0
- package/.opencode/mednotes/skills/link-medical-wiki/SKILL.md +224 -0
- package/.opencode/mednotes/skills/obsidian-cli/SKILL.md +118 -0
- package/.opencode/mednotes/skills/obsidian-markdown/SKILL.md +207 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/.opencode/mednotes/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/.opencode/mednotes/skills/obsidian-ops/SKILL.md +136 -0
- package/.opencode/mednotes/skills/pdf-library/SKILL.md +45 -0
- package/.opencode/mednotes/skills/process-medical-chats/SKILL.md +246 -0
- package/.opencode/mednotes/skills/workflow-report/SKILL.md +100 -0
- package/.opencode/mednotes/src/mednotes/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/README.md +26 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/build_demo_apkg.py +177 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/contracts.py +385 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/flashcards_machine.py +522 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/fsm.py +817 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/index.py +630 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/install_models.py +445 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/model.py +359 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_links.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/obsidian_note_utils.py +546 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/pipeline.py +580 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/report.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sources.py +682 -0
- package/.opencode/mednotes/src/mednotes/domains/flashcards/sync_rules.py +184 -0
- package/.opencode/mednotes/src/mednotes/domains/history/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_fsm.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/history/history_machine.py +453 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/__init__.py +7 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_fsm.py +808 -0
- package/.opencode/mednotes/src/mednotes/domains/setup/setup_machine.py +973 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/README.md +64 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/api.py +668 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/batch_state.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/atomicity/atomicity.py +877 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/body_link/body_linker.py +1562 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/effect_adapters.py +949 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/effects/fix_wiki_runtime_adapters.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/coverage.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph.py +396 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/graph/graph_fixes.py +161 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/hygiene/hygiene.py +483 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/anchors.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/__init__.py +0 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/cache.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/config.py +131 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/download.py +224 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/frontmatter.py +59 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/insert.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/core/local_import.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/__init__.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_profiles.py +99 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/web_search.py +203 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/illustrate/sources/wikimedia.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_db_adapter.mjs +434 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_node_runtime.py +274 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/markdown/markdown_query.py +227 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/artifacts.py +605 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/canonical_merge.py +277 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/markdown_zones.py +85 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/meaning_planner.py +307 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_iter.py +67 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_merge.py +278 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_plan.py +409 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_policy.py +22 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/__init__.py +79 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/fixes.py +264 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/frontmatter.py +435 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/models.py +208 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/prompts.py +37 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/tables.py +236 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/note_style/validate.py +404 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/provenance.py +478 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/raw_chats.py +273 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/notes/sources_backfill.py +235 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/__init__.py +10 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/anchors.py +16 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/captions.py +47 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cli.py +179 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/cloud.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/config.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/context_packets.py +76 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/db.py +81 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/doctor.py +102 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/figure_ids.py +42 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ingest.py +326 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/insert.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/mentions.py +57 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/ocr.py +71 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/paths.py +35 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/pdf_engine.py +77 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/schema.py +155 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/search.py +188 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/app.py +89 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/image_backend.py +29 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/pdf/tui/state.py +65 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish.py +1139 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_receipts.py +365 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/publish/publish_recovery.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_behavior_corpus.py +2069 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_report_validation.py +4448 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/agent_run_audit.py +852 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/architect_prompt_eval.py +341 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/body_linker_eval.py +240 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_output_validation.py +175 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/curator_prompt_eval.py +865 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/quality/triager_prompt_eval.py +1295 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/related_notes/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/related_notes/related_notes.py +1920 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/related_notes/related_notes_headless.py +1186 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/plan_attestation.py +148 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/specialist_receipts.py +360 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/specialist_runtime.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/specialist/specialist_task_runner.py +2470 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/style/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/style/style.py +1952 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/subagents/agents.py +1767 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/alias_projection.py +331 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/link_terms.py +151 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/llm_disambiguation.py +182 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/__init__.py +116 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/audit.py +201 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/migration.py +314 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/normalize.py +72 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/policy.py +135 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/resolve.py +413 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/schema.py +157 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/taxonomy/status.py +137 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_bootstrap.py +509 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_curator_batch.py +1115 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_ingestion.py +632 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_map.py +930 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/capabilities/vocabulary/vocabulary_recovery.py +1388 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/cli.py +6665 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/common.py +69 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/config.py +210 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/__init__.py +74 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_report.py +242 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agent_run_audit.py +196 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/agents.py +601 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/curator.py +256 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/effect_payloads.py +519 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/happy_path.py +190 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/link_git.py +110 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/link_runtime_artifact.py +52 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/note_plan.py +75 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/paths.py +114 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/public_report.py +53 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/publish.py +111 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/raw_coverage.py +217 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes.py +136 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_headless.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/related_notes_runtime.py +395 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/schema_registry.py +637 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/specialist.py +432 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/status.py +62 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/style_rewrite.py +568 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/vocabulary_ingestion.py +223 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_blockers.py +510 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_guardrails.py +637 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_outcomes.py +121 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/contracts/workflow_receipts.py +100 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/__main__.py +4 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/__init__.py +2 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/candidates.py +193 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/cli.py +189 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/gemini.py +220 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/inputs.py +120 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/models.py +34 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/parsing.py +48 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/prompts.py +216 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/quality.py +54 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/reporting.py +24 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/runner.py +433 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/utils.py +39 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/enrich/workflow/vault_guard_bridge.py +17 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_context_packets.py +454 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_decision_projection.py +133 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_effects.py +1260 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_fsm.py +2768 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_machine.py +1588 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_plan.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_primary_objective.py +316 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_problem.py +153 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_receipt_evidence.py +306 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_states.py +290 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/fix_wiki_user_report.py +342 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/fix_wiki/health.py +6332 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_fsm.py +1119 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_git.py +638 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_machine.py +1106 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_retry_governance.py +374 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_runtime_result.py +485 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/link_triggers.py +183 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/linking.py +2758 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/reference_repair.py +718 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link/related_notes_fsm.py +1855 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/link_related/link_related_machine.py +834 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/__init__.py +1 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_fsm.py +1592 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_machine.py +3097 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_primary_objective.py +28 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/flows/process_chats/process_chats_runtime_result.py +185 -0
- package/.opencode/mednotes/src/mednotes/domains/wiki/performance.py +97 -0
- package/.opencode/mednotes/src/mednotes/kernel/__init__.py +6 -0
- package/.opencode/mednotes/src/mednotes/kernel/agent_directive.py +336 -0
- package/.opencode/mednotes/src/mednotes/kernel/base.py +51 -0
- package/.opencode/mednotes/src/mednotes/kernel/blockers.py +39 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_executor.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/effect_intent.py +69 -0
- package/.opencode/mednotes/src/mednotes/kernel/effects.py +160 -0
- package/.opencode/mednotes/src/mednotes/kernel/errors.py +38 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_event.py +35 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_model.py +55 -0
- package/.opencode/mednotes/src/mednotes/kernel/fsm_transition_result.py +75 -0
- package/.opencode/mednotes/src/mednotes/kernel/guardrails.py +188 -0
- package/.opencode/mednotes/src/mednotes/kernel/progress.py +319 -0
- package/.opencode/mednotes/src/mednotes/kernel/public_report.py +346 -0
- package/.opencode/mednotes/src/mednotes/kernel/state_machine.py +164 -0
- package/.opencode/mednotes/src/mednotes/kernel/workflow.py +619 -0
- package/.opencode/mednotes/src/mednotes/platform/__init__.py +5 -0
- package/.opencode/mednotes/src/mednotes/platform/backup_policy.py +382 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/__init__.py +62 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/cli.py +275 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/contracts.py +83 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/core.py +4168 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/integrity.py +989 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/operational_contract.py +2293 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry.py +875 -0
- package/.opencode/mednotes/src/mednotes/platform/feedback/telemetry_config.py +65 -0
- package/.opencode/mednotes/src/mednotes/platform/opencode_runtime_config.py +182 -0
- package/.opencode/mednotes/src/mednotes/platform/paths/__init__.py +1560 -0
- package/.opencode/mednotes/src/mednotes/platform/secrets.py +89 -0
- package/.opencode/mednotes/src/mednotes/platform/user_config.py +103 -0
- package/.opencode/mednotes/src/mednotes/platform/vault_guard.py +214 -0
- package/.opencode/mednotes/uv.lock +932 -0
- package/.opencode/mednotes.generated.json +395 -0
- package/.opencode/opencode.json +31 -0
- package/.opencode/plugins/mednotes-fsm.mjs +7 -0
- package/.opencode/plugins/mednotes_hook/adapters/antigravity.mjs +169 -0
- package/.opencode/plugins/mednotes_hook/adapters/harness_payload.mjs +103 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_plugin.mjs +341 -0
- package/.opencode/plugins/mednotes_hook/adapters/opencode_user_config_sync.mjs +177 -0
- package/.opencode/plugins/mednotes_hook/anki_preflight.mjs +214 -0
- package/.opencode/plugins/mednotes_hook/cli.mjs +143 -0
- package/.opencode/plugins/mednotes_hook/diagnostics.mjs +11 -0
- package/.opencode/plugins/mednotes_hook/domain/agent_directive_core.mjs +160 -0
- package/.opencode/plugins/mednotes_hook/fsm_directive.mjs +1470 -0
- package/.opencode/plugins/mednotes_hook/hook_errors.mjs +120 -0
- package/.opencode/plugins/mednotes_hook/retention.mjs +114 -0
- package/.opencode/plugins/mednotes_hook/runtime.mjs +174 -0
- package/.opencode/plugins/mednotes_hook/telemetry_capture.mjs +511 -0
- package/.opencode/plugins/mednotes_hook/vault_guard.mjs +624 -0
- package/AGENTS.md +57 -0
- package/README.md +194 -0
- package/adapters/antigravity/agents.json +80 -0
- package/adapters/antigravity/templates/med-chat-triager.md +214 -0
- package/adapters/antigravity/templates/med-flashcard-maker.md +72 -0
- package/adapters/antigravity/templates/med-knowledge-architect.md +241 -0
- package/adapters/antigravity/templates/med-link-graph-curator.md +187 -0
- package/adapters/antigravity/templates/med-publish-guard.md +71 -0
- package/adapters/gemini-cli/gemini-extension.json +14 -0
- package/adapters/gemini-cli/package.json +15 -0
- package/adapters/gemini-cli/pyproject.toml +48 -0
- package/bin/mednotes-opencode.mjs +155 -0
- package/contracts/agents.json +116 -0
- package/core/agents/med-chat-triager.md +197 -0
- package/core/agents/med-flashcard-maker.md +56 -0
- package/core/agents/med-knowledge-architect.md +224 -0
- package/core/agents/med-link-graph-curator.md +171 -0
- package/core/agents/med-publish-guard.md +55 -0
- package/core/commands/flashcards.toml +22 -0
- package/core/commands/mednotes/create.toml +22 -0
- package/core/commands/mednotes/enrich.toml +24 -0
- package/core/commands/mednotes/fix-wiki.toml +24 -0
- package/core/commands/mednotes/history.toml +19 -0
- package/core/commands/mednotes/link-body.toml +22 -0
- package/core/commands/mednotes/link-related.toml +24 -0
- package/core/commands/mednotes/link.toml +24 -0
- package/core/commands/mednotes/pdf-library.toml +24 -0
- package/core/commands/mednotes/process-chats.toml +20 -0
- package/core/commands/mednotes/setup.toml +18 -0
- package/core/commands/mednotes/status.toml +24 -0
- package/core/commands/mednotes/telemetry.toml +24 -0
- package/core/commands/report.toml +23 -0
- package/core/skills/THIRD_PARTY_NOTICES.md +45 -0
- package/core/skills/create-medical-flashcards/SKILL.md +113 -0
- package/core/skills/create-medical-note/SKILL.md +90 -0
- package/core/skills/enrich-medical-note/SKILL.md +120 -0
- package/core/skills/fix-medical-wiki/SKILL.md +559 -0
- package/core/skills/link-medical-wiki/SKILL.md +224 -0
- package/core/skills/obsidian-cli/SKILL.md +118 -0
- package/core/skills/obsidian-markdown/SKILL.md +207 -0
- package/core/skills/obsidian-markdown/references/CALLOUTS.md +58 -0
- package/core/skills/obsidian-markdown/references/EMBEDS.md +63 -0
- package/core/skills/obsidian-markdown/references/PROPERTIES.md +61 -0
- package/core/skills/obsidian-ops/SKILL.md +136 -0
- package/core/skills/pdf-library/SKILL.md +45 -0
- package/core/skills/process-medical-chats/SKILL.md +246 -0
- package/core/skills/workflow-report/SKILL.md +100 -0
- package/package.json +45 -0
|
@@ -0,0 +1,275 @@
|
|
|
1
|
+
"""CLI for local workflow feedback records and improvement backlog."""
|
|
2
|
+
from __future__ import annotations
|
|
3
|
+
|
|
4
|
+
import argparse
|
|
5
|
+
import json
|
|
6
|
+
import sys
|
|
7
|
+
import time
|
|
8
|
+
from pathlib import Path
|
|
9
|
+
from typing import Any
|
|
10
|
+
|
|
11
|
+
from mednotes.platform.feedback.core import (
|
|
12
|
+
BACKLOG_SCHEMA,
|
|
13
|
+
build_backlog,
|
|
14
|
+
feedback_root,
|
|
15
|
+
record_workflow_run,
|
|
16
|
+
)
|
|
17
|
+
from mednotes.platform.feedback.integrity import check_extension_integrity
|
|
18
|
+
from mednotes.platform.feedback.telemetry import (
|
|
19
|
+
DEFAULT_PAYLOAD_LEVEL,
|
|
20
|
+
PAYLOAD_LEVELS,
|
|
21
|
+
disable_telemetry,
|
|
22
|
+
enable_telemetry,
|
|
23
|
+
preview_envelope,
|
|
24
|
+
send_telemetry,
|
|
25
|
+
telemetry_status,
|
|
26
|
+
)
|
|
27
|
+
|
|
28
|
+
|
|
29
|
+
def _read_json(path: str | None) -> Any:
|
|
30
|
+
if not path:
|
|
31
|
+
return {}
|
|
32
|
+
if path == "-":
|
|
33
|
+
return json.loads(sys.stdin.read() or "{}")
|
|
34
|
+
return json.loads(Path(path).read_text(encoding="utf-8"))
|
|
35
|
+
|
|
36
|
+
|
|
37
|
+
def _json(data: Any) -> None:
|
|
38
|
+
print(json.dumps(data, ensure_ascii=False, indent=2, sort_keys=True))
|
|
39
|
+
|
|
40
|
+
|
|
41
|
+
def _cmd_record(args: argparse.Namespace) -> int:
|
|
42
|
+
payload = _read_json(args.payload)
|
|
43
|
+
if not isinstance(payload, dict):
|
|
44
|
+
payload = {}
|
|
45
|
+
if args.status:
|
|
46
|
+
payload["status"] = args.status
|
|
47
|
+
if args.phase:
|
|
48
|
+
payload["phase"] = args.phase
|
|
49
|
+
if args.blocked_reason:
|
|
50
|
+
payload["blocked_reason"] = args.blocked_reason
|
|
51
|
+
if args.next_action:
|
|
52
|
+
payload["next_action"] = args.next_action
|
|
53
|
+
if args.required_input:
|
|
54
|
+
payload["required_inputs"] = args.required_input
|
|
55
|
+
if args.human_decision_required:
|
|
56
|
+
payload["human_decision_required"] = True
|
|
57
|
+
if args.dry_run:
|
|
58
|
+
payload["dry_run"] = True
|
|
59
|
+
if args.apply:
|
|
60
|
+
payload["apply"] = True
|
|
61
|
+
record = record_workflow_run(
|
|
62
|
+
workflow=args.workflow,
|
|
63
|
+
command=args.command,
|
|
64
|
+
payload=payload,
|
|
65
|
+
exit_code=args.exit_code,
|
|
66
|
+
started_at=time.time(),
|
|
67
|
+
duration_ms=args.duration_ms,
|
|
68
|
+
snippets=args.snippet,
|
|
69
|
+
source="agent" if args.agent else "cli",
|
|
70
|
+
)
|
|
71
|
+
_json(record)
|
|
72
|
+
return 0
|
|
73
|
+
|
|
74
|
+
|
|
75
|
+
def _cmd_backlog(args: argparse.Namespace) -> int:
|
|
76
|
+
backlog = build_backlog(since=args.since)
|
|
77
|
+
if args.format == "json":
|
|
78
|
+
_json(backlog)
|
|
79
|
+
else:
|
|
80
|
+
print(format_backlog_markdown(backlog), end="")
|
|
81
|
+
return 0
|
|
82
|
+
|
|
83
|
+
|
|
84
|
+
def _cmd_telemetry_enable(args: argparse.Namespace) -> int:
|
|
85
|
+
_json(
|
|
86
|
+
enable_telemetry(
|
|
87
|
+
endpoint_url=args.endpoint,
|
|
88
|
+
auth_token=args.token,
|
|
89
|
+
payload_level=args.payload_level,
|
|
90
|
+
)
|
|
91
|
+
)
|
|
92
|
+
return 0
|
|
93
|
+
|
|
94
|
+
|
|
95
|
+
def _cmd_telemetry_disable(args: argparse.Namespace) -> int:
|
|
96
|
+
_json(disable_telemetry())
|
|
97
|
+
return 0
|
|
98
|
+
|
|
99
|
+
|
|
100
|
+
def _cmd_telemetry_status(args: argparse.Namespace) -> int:
|
|
101
|
+
_json(telemetry_status())
|
|
102
|
+
return 0
|
|
103
|
+
|
|
104
|
+
|
|
105
|
+
def _cmd_telemetry_preview(args: argparse.Namespace) -> int:
|
|
106
|
+
_json(preview_envelope(since=args.since, limit=args.limit))
|
|
107
|
+
return 0
|
|
108
|
+
|
|
109
|
+
|
|
110
|
+
def _cmd_telemetry_send(args: argparse.Namespace) -> int:
|
|
111
|
+
result = send_telemetry(since=args.since, limit=args.limit)
|
|
112
|
+
_json(result)
|
|
113
|
+
return 0 if result.get("ok") else 3
|
|
114
|
+
|
|
115
|
+
|
|
116
|
+
def _cmd_integrity_status(args: argparse.Namespace) -> int:
|
|
117
|
+
status = check_extension_integrity(
|
|
118
|
+
include_diff=args.include_diff,
|
|
119
|
+
force=args.force,
|
|
120
|
+
cache_dir=feedback_root() / "integrity",
|
|
121
|
+
)
|
|
122
|
+
if args.format == "json":
|
|
123
|
+
_json(status)
|
|
124
|
+
else:
|
|
125
|
+
print(format_integrity_markdown(status), end="")
|
|
126
|
+
return 0 if status.get("checked") or status.get("skipped_reason") in {"manifest_not_found"} else 4
|
|
127
|
+
|
|
128
|
+
|
|
129
|
+
def format_backlog_markdown(backlog: dict[str, Any]) -> str:
|
|
130
|
+
lines = [
|
|
131
|
+
"# Workflow Feedback Backlog",
|
|
132
|
+
"",
|
|
133
|
+
f"- Schema: `{BACKLOG_SCHEMA}`",
|
|
134
|
+
f"- Desde: `{backlog.get('since')}`",
|
|
135
|
+
f"- Runs analisados: {backlog.get('run_count', 0)}",
|
|
136
|
+
f"- Itens: {len(backlog.get('items', []))}",
|
|
137
|
+
"",
|
|
138
|
+
]
|
|
139
|
+
items = backlog.get("items") if isinstance(backlog.get("items"), list) else []
|
|
140
|
+
if not items:
|
|
141
|
+
lines.append("Nenhum padrão recorrente encontrado.")
|
|
142
|
+
return "\n".join(lines) + "\n"
|
|
143
|
+
for item in items:
|
|
144
|
+
lines.extend(
|
|
145
|
+
[
|
|
146
|
+
f"## {item['title']}",
|
|
147
|
+
"",
|
|
148
|
+
f"- Workflow: `{item['workflow']}`",
|
|
149
|
+
f"- Sinal: `{item['signal']}`",
|
|
150
|
+
f"- Severidade: `{item['severity']}`",
|
|
151
|
+
f"- Ocorrências: {item['occurrence_count']}",
|
|
152
|
+
f"- Tipo: `{item['improvement_type']}`",
|
|
153
|
+
f"- Evidência: {item['evidence']}",
|
|
154
|
+
f"- Recomendação: {item['recommendation']}",
|
|
155
|
+
f"- Teste sugerido: {item['suggested_test']}",
|
|
156
|
+
f"- Runs exemplo: {', '.join(item['sample_run_ids'])}",
|
|
157
|
+
"",
|
|
158
|
+
]
|
|
159
|
+
)
|
|
160
|
+
return "\n".join(lines)
|
|
161
|
+
|
|
162
|
+
|
|
163
|
+
def format_integrity_markdown(status: dict[str, Any]) -> str:
|
|
164
|
+
summary = status.get("summary") if isinstance(status.get("summary"), dict) else {}
|
|
165
|
+
lines = [
|
|
166
|
+
"# Extension Integrity",
|
|
167
|
+
"",
|
|
168
|
+
f"- Checked: `{status.get('checked')}`",
|
|
169
|
+
f"- Drift detected: `{status.get('drift_detected')}`",
|
|
170
|
+
f"- App version: `{status.get('app_version', 'unknown')}`",
|
|
171
|
+
f"- Manifest: `{status.get('manifest_path') or '(not found)'}`",
|
|
172
|
+
f"- Changed: {summary.get('changed_count', 0)}",
|
|
173
|
+
f"- Modified: {summary.get('modified_count', 0)}",
|
|
174
|
+
f"- Missing: {summary.get('missing_count', 0)}",
|
|
175
|
+
f"- Unexpected: {summary.get('unexpected_count', 0)}",
|
|
176
|
+
f"- Line-ending only: {summary.get('line_ending_only_count', 0)}",
|
|
177
|
+
]
|
|
178
|
+
if status.get("skipped_reason"):
|
|
179
|
+
lines.append(f"- Skipped reason: `{status.get('skipped_reason')}`")
|
|
180
|
+
for label, key in (("Modified files", "modified_files"), ("Missing files", "missing_files"), ("Unexpected files", "unexpected_files")):
|
|
181
|
+
files = status.get(key) if isinstance(status.get(key), list) else []
|
|
182
|
+
if not files:
|
|
183
|
+
continue
|
|
184
|
+
lines.extend(["", f"## {label}"])
|
|
185
|
+
for item in files[:8]:
|
|
186
|
+
lines.append(f"- `{item.get('path')}` ({item.get('kind')})")
|
|
187
|
+
samples = status.get("diff_samples") if isinstance(status.get("diff_samples"), list) else []
|
|
188
|
+
if samples:
|
|
189
|
+
lines.extend(["", "## Diff samples"])
|
|
190
|
+
for sample in samples[:3]:
|
|
191
|
+
body = sample.get("sample") or sample.get("current_excerpt") or sample.get("diff_unavailable_reason") or ""
|
|
192
|
+
lines.extend([f"- `{sample.get('path')}`", "", "```", str(body), "```"])
|
|
193
|
+
extension_diffs = status.get("extension_diffs") if isinstance(status.get("extension_diffs"), list) else []
|
|
194
|
+
if extension_diffs:
|
|
195
|
+
lines.extend(["", "## Extension diffs"])
|
|
196
|
+
for diff in extension_diffs[:3]:
|
|
197
|
+
body = diff.get("patch") or diff.get("full_diff_unavailable_reason") or ""
|
|
198
|
+
lines.extend([f"- `{diff.get('path')}` ({diff.get('change')})", "", "```diff", str(body), "```"])
|
|
199
|
+
return "\n".join(lines) + "\n"
|
|
200
|
+
|
|
201
|
+
|
|
202
|
+
def build_parser() -> argparse.ArgumentParser:
|
|
203
|
+
parser = argparse.ArgumentParser(description=__doc__)
|
|
204
|
+
sub = parser.add_subparsers(dest="command", required=True)
|
|
205
|
+
|
|
206
|
+
record = sub.add_parser("record", help="record an agent-driven workflow result")
|
|
207
|
+
record.add_argument("--workflow", required=True)
|
|
208
|
+
record.add_argument("--command", default="")
|
|
209
|
+
record.add_argument("--payload", help="JSON file, or '-' for stdin")
|
|
210
|
+
record.add_argument("--status")
|
|
211
|
+
record.add_argument("--phase")
|
|
212
|
+
record.add_argument("--blocked-reason")
|
|
213
|
+
record.add_argument("--next-action")
|
|
214
|
+
record.add_argument("--required-input", action="append", default=[])
|
|
215
|
+
record.add_argument("--human-decision-required", action="store_true")
|
|
216
|
+
record.add_argument("--dry-run", action="store_true")
|
|
217
|
+
record.add_argument("--apply", action="store_true")
|
|
218
|
+
record.add_argument("--exit-code", type=int, default=0)
|
|
219
|
+
record.add_argument("--duration-ms", type=int, default=0)
|
|
220
|
+
record.add_argument("--snippet", action="append", default=[])
|
|
221
|
+
record.add_argument("--agent", action="store_true", help="mark source as agent-driven")
|
|
222
|
+
record.set_defaults(func=_cmd_record)
|
|
223
|
+
|
|
224
|
+
backlog = sub.add_parser("backlog", help="build an actionable improvement backlog")
|
|
225
|
+
backlog.add_argument("--since", default="30d", help="Window such as 30d, 12h or an ISO timestamp.")
|
|
226
|
+
backlog.add_argument("--format", choices=("markdown", "json"), default="markdown")
|
|
227
|
+
backlog.set_defaults(func=_cmd_backlog)
|
|
228
|
+
|
|
229
|
+
integrity = sub.add_parser("integrity", help="inspect extension prompt/script drift")
|
|
230
|
+
integrity_sub = integrity.add_subparsers(dest="integrity_command", required=True)
|
|
231
|
+
integrity_status = integrity_sub.add_parser("status", help="compare the installed extension with its manifest")
|
|
232
|
+
integrity_status.add_argument("--format", choices=("markdown", "json"), default="json")
|
|
233
|
+
integrity_status.add_argument("--include-diff", action="store_true", help="include short redacted diff samples")
|
|
234
|
+
integrity_status.add_argument("--force", action="store_true", help="ignore throttle/cache and scan now")
|
|
235
|
+
integrity_status.set_defaults(func=_cmd_integrity_status)
|
|
236
|
+
|
|
237
|
+
telemetry = sub.add_parser("telemetry", help="manage remote telemetry, status and opt-out")
|
|
238
|
+
telemetry_sub = telemetry.add_subparsers(dest="telemetry_command", required=True)
|
|
239
|
+
|
|
240
|
+
enable = telemetry_sub.add_parser("enable", help="manually enable or override telemetry endpoint")
|
|
241
|
+
enable.add_argument("--endpoint", required=True, help="HTTPS endpoint that receives telemetry envelopes")
|
|
242
|
+
enable.add_argument("--token", required=True, help="Bearer token expected by the telemetry endpoint")
|
|
243
|
+
enable.add_argument("--payload-level", choices=sorted(PAYLOAD_LEVELS), default=DEFAULT_PAYLOAD_LEVEL)
|
|
244
|
+
enable.set_defaults(func=_cmd_telemetry_enable)
|
|
245
|
+
|
|
246
|
+
disable = telemetry_sub.add_parser("disable", help="disable remote telemetry")
|
|
247
|
+
disable.set_defaults(func=_cmd_telemetry_disable)
|
|
248
|
+
|
|
249
|
+
status = telemetry_sub.add_parser("status", help="show telemetry config and outbox state")
|
|
250
|
+
status.set_defaults(func=_cmd_telemetry_status)
|
|
251
|
+
|
|
252
|
+
preview = telemetry_sub.add_parser("preview", help="show the next telemetry envelope without sending it")
|
|
253
|
+
preview.add_argument("--since", default="30d")
|
|
254
|
+
preview.add_argument("--limit", type=int, default=20)
|
|
255
|
+
preview.set_defaults(func=_cmd_telemetry_preview)
|
|
256
|
+
|
|
257
|
+
send = telemetry_sub.add_parser("send", help="send unsent telemetry records and retry outbox")
|
|
258
|
+
send.add_argument("--since", default="30d")
|
|
259
|
+
send.add_argument("--limit", type=int, default=20)
|
|
260
|
+
send.set_defaults(func=_cmd_telemetry_send)
|
|
261
|
+
return parser
|
|
262
|
+
|
|
263
|
+
|
|
264
|
+
def main(argv: list[str] | None = None) -> int:
|
|
265
|
+
parser = build_parser()
|
|
266
|
+
args = parser.parse_args(argv)
|
|
267
|
+
try:
|
|
268
|
+
return args.func(args)
|
|
269
|
+
except (OSError, json.JSONDecodeError, ValueError) as exc:
|
|
270
|
+
print(str(exc), file=sys.stderr)
|
|
271
|
+
return 5
|
|
272
|
+
|
|
273
|
+
|
|
274
|
+
if __name__ == "__main__":
|
|
275
|
+
raise SystemExit(main())
|
|
@@ -0,0 +1,83 @@
|
|
|
1
|
+
"""Typed adapter contracts for local telemetry and manual reports.
|
|
2
|
+
|
|
3
|
+
These models deliberately live in the platform layer: they describe local
|
|
4
|
+
adapter receipts, not domain policy. They are exported so launchers and agents
|
|
5
|
+
can audit `/mednotes:telemetry` and `/report` without falling back to loose
|
|
6
|
+
status dictionaries.
|
|
7
|
+
"""
|
|
8
|
+
from __future__ import annotations
|
|
9
|
+
|
|
10
|
+
from typing import Literal
|
|
11
|
+
|
|
12
|
+
from pydantic import Field, model_validator
|
|
13
|
+
|
|
14
|
+
from mednotes.kernel.base import ContractModel
|
|
15
|
+
|
|
16
|
+
|
|
17
|
+
class TelemetryRecentBundle(ContractModel):
|
|
18
|
+
run_id: str = ""
|
|
19
|
+
workflow: str = ""
|
|
20
|
+
bundle_id: str = ""
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
class TelemetryHookHealth(ContractModel):
|
|
24
|
+
recent_event_count: int = Field(ge=0)
|
|
25
|
+
recent_error_count: int = Field(ge=0)
|
|
26
|
+
latest_error_types: list[str] = Field(default_factory=list)
|
|
27
|
+
|
|
28
|
+
|
|
29
|
+
class TelemetryStatusSnapshot(ContractModel):
|
|
30
|
+
schema_: Literal["medical-notes-workbench.workflow-telemetry-status.v1"] = Field(
|
|
31
|
+
"medical-notes-workbench.workflow-telemetry-status.v1",
|
|
32
|
+
alias="schema",
|
|
33
|
+
)
|
|
34
|
+
enabled: bool
|
|
35
|
+
ready: bool
|
|
36
|
+
endpoint_url: str = ""
|
|
37
|
+
payload_level: str = Field(min_length=1)
|
|
38
|
+
consent_at: str = ""
|
|
39
|
+
auto_enabled_at: str = ""
|
|
40
|
+
opt_out_at: str = ""
|
|
41
|
+
source: str = Field(min_length=1)
|
|
42
|
+
install_id: str = ""
|
|
43
|
+
outbox_count: int = Field(ge=0)
|
|
44
|
+
sent_run_count: int = Field(ge=0)
|
|
45
|
+
config_path: str = Field(min_length=1)
|
|
46
|
+
defaults_path: str = ""
|
|
47
|
+
recent_bundles: list[TelemetryRecentBundle] = Field(default_factory=list)
|
|
48
|
+
pending_pre_update_snapshot_count: int = Field(ge=0)
|
|
49
|
+
hook_health: TelemetryHookHealth
|
|
50
|
+
|
|
51
|
+
@model_validator(mode="after")
|
|
52
|
+
def disabled_project_cannot_be_ready(self) -> TelemetryStatusSnapshot:
|
|
53
|
+
if self.source == "project_disabled" and (self.enabled or self.ready):
|
|
54
|
+
raise ValueError("project-disabled telemetry cannot be enabled or ready")
|
|
55
|
+
return self
|
|
56
|
+
|
|
57
|
+
|
|
58
|
+
class ManualReportReceipt(ContractModel):
|
|
59
|
+
schema_: Literal["medical-notes-workbench.manual-report-receipt.v1"] = Field(
|
|
60
|
+
"medical-notes-workbench.manual-report-receipt.v1",
|
|
61
|
+
alias="schema",
|
|
62
|
+
)
|
|
63
|
+
status: Literal["sent", "not_sent", "blocked"]
|
|
64
|
+
requested_by_user: bool = True
|
|
65
|
+
capture_schema: str = Field(min_length=1)
|
|
66
|
+
envelope_schema: str = Field(min_length=1)
|
|
67
|
+
snapshot_path: str = ""
|
|
68
|
+
envelope_path: str = ""
|
|
69
|
+
send_result_path: str = ""
|
|
70
|
+
sent: bool = False
|
|
71
|
+
reason: str = ""
|
|
72
|
+
next_action: str = ""
|
|
73
|
+
redaction_status: Literal["redacted"] = "redacted"
|
|
74
|
+
|
|
75
|
+
@model_validator(mode="after")
|
|
76
|
+
def status_matches_send_result(self) -> ManualReportReceipt:
|
|
77
|
+
if self.status == "sent" and not self.sent:
|
|
78
|
+
raise ValueError("sent manual report receipt requires sent=true")
|
|
79
|
+
if self.status != "sent" and self.sent:
|
|
80
|
+
raise ValueError("sent=true requires status=sent")
|
|
81
|
+
if self.status in {"not_sent", "blocked"} and not self.reason.strip():
|
|
82
|
+
raise ValueError("unsent manual report receipt requires reason")
|
|
83
|
+
return self
|