snappy 3.0.3__cp38-cp38-macosx_11_0_arm64.whl → 3.2__cp38-cp38-macosx_11_0_arm64.whl

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  1. snappy/CyOpenGL.cpython-38-darwin.so +0 -0
  2. snappy/SnapPy.cpython-38-darwin.so +0 -0
  3. snappy/SnapPyHP.cpython-38-darwin.so +0 -0
  4. snappy/__init__.py +373 -426
  5. snappy/app.py +240 -75
  6. snappy/app_menus.py +93 -78
  7. snappy/browser.py +87 -63
  8. snappy/cache.py +5 -8
  9. snappy/canonical.py +249 -0
  10. snappy/{verify/cusp_shapes.py → cusps/__init__.py} +11 -19
  11. snappy/cusps/cusp_area_matrix.py +101 -0
  12. snappy/{verify/cusp_areas.py → cusps/cusp_areas_from_matrix.py} +39 -54
  13. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  14. snappy/cusps/test.py +21 -0
  15. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  16. snappy/database.py +40 -31
  17. snappy/db_utilities.py +13 -14
  18. snappy/decorated_isosig.py +377 -133
  19. snappy/dev/extended_ptolemy/complexVolumesClosed.py +42 -9
  20. snappy/dev/extended_ptolemy/extended.py +32 -25
  21. snappy/dev/extended_ptolemy/giac_rur.py +23 -8
  22. snappy/dev/extended_ptolemy/phc_wrapper.py +10 -10
  23. snappy/dev/vericlosed/computeApproxHyperbolicStructureOrb.py +2 -1
  24. snappy/dev/vericlosed/gimbalLoopFinder.py +5 -5
  25. snappy/dev/vericlosed/hyperbolicStructure.py +3 -3
  26. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +2 -2
  27. snappy/dev/vericlosed/truncatedComplex.py +3 -2
  28. snappy/dev/vericlosed/verifyHyperbolicStructureEngine.py +4 -3
  29. snappy/doc/_images/geodesics.jpg +0 -0
  30. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  31. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  32. snappy/doc/_images/o9_00000_systole_paper_plane.jpg +0 -0
  33. snappy/doc/_images/o9_00000_systole_paper_plane_closer.jpg +0 -0
  34. snappy/doc/_sources/additional_classes.rst.txt +1 -0
  35. snappy/doc/_sources/credits.rst.txt +6 -1
  36. snappy/doc/_sources/development.rst.txt +69 -50
  37. snappy/doc/_sources/index.rst.txt +101 -66
  38. snappy/doc/_sources/installing.rst.txt +148 -165
  39. snappy/doc/_sources/news.rst.txt +136 -32
  40. snappy/doc/_sources/ptolemy.rst.txt +1 -1
  41. snappy/doc/_sources/ptolemy_examples1.rst.txt +9 -8
  42. snappy/doc/_sources/ptolemy_examples2.rst.txt +3 -3
  43. snappy/doc/_sources/ptolemy_examples3.rst.txt +14 -14
  44. snappy/doc/_sources/ptolemy_prelim.rst.txt +1 -1
  45. snappy/doc/_sources/snap.rst.txt +2 -2
  46. snappy/doc/_sources/snappy.rst.txt +1 -1
  47. snappy/doc/_sources/triangulation.rst.txt +3 -2
  48. snappy/doc/_sources/verify.rst.txt +89 -29
  49. snappy/doc/_sources/verify_internals.rst.txt +5 -16
  50. snappy/doc/_static/SnapPy-horizontal-128.png +0 -0
  51. snappy/doc/_static/SnapPy.ico +0 -0
  52. snappy/doc/_static/_sphinx_javascript_frameworks_compat.js +123 -0
  53. snappy/doc/_static/basic.css +47 -27
  54. snappy/doc/_static/css/badge_only.css +1 -0
  55. snappy/doc/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
  56. snappy/doc/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
  57. snappy/doc/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
  58. snappy/doc/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
  59. snappy/doc/_static/css/fonts/fontawesome-webfont.eot +0 -0
  60. snappy/doc/_static/css/fonts/fontawesome-webfont.svg +2671 -0
  61. snappy/doc/_static/css/fonts/fontawesome-webfont.ttf +0 -0
  62. snappy/doc/_static/css/fonts/fontawesome-webfont.woff +0 -0
  63. snappy/doc/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
  64. snappy/doc/_static/css/fonts/lato-bold-italic.woff +0 -0
  65. snappy/doc/_static/css/fonts/lato-bold-italic.woff2 +0 -0
  66. snappy/doc/_static/css/fonts/lato-bold.woff +0 -0
  67. snappy/doc/_static/css/fonts/lato-bold.woff2 +0 -0
  68. snappy/doc/_static/css/fonts/lato-normal-italic.woff +0 -0
  69. snappy/doc/_static/css/fonts/lato-normal-italic.woff2 +0 -0
  70. snappy/doc/_static/css/fonts/lato-normal.woff +0 -0
  71. snappy/doc/_static/css/fonts/lato-normal.woff2 +0 -0
  72. snappy/doc/_static/css/theme.css +4 -0
  73. snappy/doc/_static/doctools.js +107 -274
  74. snappy/doc/_static/documentation_options.js +6 -5
  75. snappy/doc/_static/fonts/Lato/lato-bold.eot +0 -0
  76. snappy/doc/_static/fonts/Lato/lato-bold.ttf +0 -0
  77. snappy/doc/_static/fonts/Lato/lato-bold.woff +0 -0
  78. snappy/doc/_static/fonts/Lato/lato-bold.woff2 +0 -0
  79. snappy/doc/_static/fonts/Lato/lato-bolditalic.eot +0 -0
  80. snappy/doc/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
  81. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff +0 -0
  82. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
  83. snappy/doc/_static/fonts/Lato/lato-italic.eot +0 -0
  84. snappy/doc/_static/fonts/Lato/lato-italic.ttf +0 -0
  85. snappy/doc/_static/fonts/Lato/lato-italic.woff +0 -0
  86. snappy/doc/_static/fonts/Lato/lato-italic.woff2 +0 -0
  87. snappy/doc/_static/fonts/Lato/lato-regular.eot +0 -0
  88. snappy/doc/_static/fonts/Lato/lato-regular.ttf +0 -0
  89. snappy/doc/_static/fonts/Lato/lato-regular.woff +0 -0
  90. snappy/doc/_static/fonts/Lato/lato-regular.woff2 +0 -0
  91. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
  92. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
  93. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
  94. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
  95. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
  96. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
  97. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
  98. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
  99. snappy/doc/_static/jquery.js +2 -2
  100. snappy/doc/_static/js/badge_only.js +1 -0
  101. snappy/doc/_static/js/theme.js +1 -0
  102. snappy/doc/_static/js/versions.js +228 -0
  103. snappy/doc/_static/language_data.js +3 -101
  104. snappy/doc/_static/pygments.css +1 -0
  105. snappy/doc/_static/searchtools.js +489 -398
  106. snappy/doc/_static/snappy_furo.css +33 -0
  107. snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -0
  108. snappy/doc/_static/sphinx_highlight.js +154 -0
  109. snappy/doc/additional_classes.html +688 -263
  110. snappy/doc/bugs.html +107 -94
  111. snappy/doc/censuses.html +155 -127
  112. snappy/doc/credits.html +115 -104
  113. snappy/doc/development.html +184 -146
  114. snappy/doc/genindex.html +287 -204
  115. snappy/doc/index.html +189 -150
  116. snappy/doc/installing.html +259 -266
  117. snappy/doc/manifold.html +1626 -592
  118. snappy/doc/manifoldhp.html +119 -105
  119. snappy/doc/news.html +198 -104
  120. snappy/doc/objects.inv +0 -0
  121. snappy/doc/other.html +117 -105
  122. snappy/doc/platonic_census.html +161 -114
  123. snappy/doc/plink.html +113 -105
  124. snappy/doc/ptolemy.html +131 -108
  125. snappy/doc/ptolemy_classes.html +242 -223
  126. snappy/doc/ptolemy_examples1.html +144 -130
  127. snappy/doc/ptolemy_examples2.html +141 -129
  128. snappy/doc/ptolemy_examples3.html +148 -132
  129. snappy/doc/ptolemy_examples4.html +131 -111
  130. snappy/doc/ptolemy_prelim.html +162 -138
  131. snappy/doc/py-modindex.html +104 -69
  132. snappy/doc/screenshots.html +117 -108
  133. snappy/doc/search.html +115 -84
  134. snappy/doc/searchindex.js +1 -1
  135. snappy/doc/snap.html +109 -96
  136. snappy/doc/snappy.html +134 -97
  137. snappy/doc/spherogram.html +259 -187
  138. snappy/doc/todo.html +107 -94
  139. snappy/doc/triangulation.html +1380 -111
  140. snappy/doc/tutorial.html +107 -94
  141. snappy/doc/verify.html +194 -125
  142. snappy/doc/verify_internals.html +248 -686
  143. snappy/drilling/__init__.py +456 -0
  144. snappy/drilling/barycentric.py +103 -0
  145. snappy/drilling/constants.py +5 -0
  146. snappy/drilling/crush.py +270 -0
  147. snappy/drilling/cusps.py +125 -0
  148. snappy/drilling/debug.py +242 -0
  149. snappy/drilling/epsilons.py +6 -0
  150. snappy/drilling/exceptions.py +55 -0
  151. snappy/drilling/moves.py +620 -0
  152. snappy/drilling/peripheral_curves.py +210 -0
  153. snappy/drilling/perturb.py +188 -0
  154. snappy/drilling/shorten.py +36 -0
  155. snappy/drilling/subdivide.py +274 -0
  156. snappy/drilling/test.py +23 -0
  157. snappy/drilling/test_cases.py +126 -0
  158. snappy/drilling/tracing.py +351 -0
  159. snappy/exceptions.py +23 -3
  160. snappy/export_stl.py +20 -14
  161. snappy/exterior_to_link/__init__.py +2 -0
  162. snappy/exterior_to_link/barycentric_geometry.py +463 -0
  163. snappy/exterior_to_link/exceptions.py +6 -0
  164. snappy/exterior_to_link/geodesic_map.json +14408 -0
  165. snappy/exterior_to_link/hyp_utils.py +112 -0
  166. snappy/exterior_to_link/link_projection.py +323 -0
  167. snappy/exterior_to_link/main.py +197 -0
  168. snappy/exterior_to_link/mcomplex_with_expansion.py +261 -0
  169. snappy/exterior_to_link/mcomplex_with_link.py +687 -0
  170. snappy/exterior_to_link/mcomplex_with_memory.py +162 -0
  171. snappy/exterior_to_link/pl_utils.py +491 -0
  172. snappy/exterior_to_link/put_in_S3.py +156 -0
  173. snappy/exterior_to_link/rational_linear_algebra.py +123 -0
  174. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +135 -0
  175. snappy/exterior_to_link/simplify_to_base_tri.py +114 -0
  176. snappy/exterior_to_link/stored_moves.py +475 -0
  177. snappy/exterior_to_link/test.py +31 -0
  178. snappy/geometric_structure/__init__.py +212 -0
  179. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  180. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  181. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  182. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  183. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  184. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  185. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  186. snappy/geometric_structure/geodesic/__init__.py +0 -0
  187. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  188. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  189. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  190. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  191. snappy/geometric_structure/geodesic/constants.py +6 -0
  192. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  193. snappy/geometric_structure/geodesic/fixed_points.py +93 -0
  194. snappy/geometric_structure/geodesic/geodesic_start_point_info.py +435 -0
  195. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  196. snappy/geometric_structure/geodesic/line.py +30 -0
  197. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  198. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  199. snappy/geometric_structure/test.py +22 -0
  200. snappy/gui.py +36 -36
  201. snappy/horoviewer.py +50 -48
  202. snappy/hyperboloid/__init__.py +212 -0
  203. snappy/hyperboloid/distances.py +245 -0
  204. snappy/hyperboloid/horoball.py +19 -0
  205. snappy/hyperboloid/line.py +35 -0
  206. snappy/hyperboloid/point.py +9 -0
  207. snappy/hyperboloid/triangle.py +29 -0
  208. snappy/{infodialog.py → infowindow.py} +32 -33
  209. snappy/isometry_signature.py +382 -0
  210. snappy/len_spec/__init__.py +596 -0
  211. snappy/len_spec/geodesic_info.py +110 -0
  212. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  213. snappy/len_spec/geodesic_piece.py +143 -0
  214. snappy/len_spec/geometric_structure.py +182 -0
  215. snappy/len_spec/geometry.py +80 -0
  216. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
  217. snappy/len_spec/spine.py +206 -0
  218. snappy/len_spec/test.py +24 -0
  219. snappy/len_spec/test_cases.py +69 -0
  220. snappy/len_spec/tile.py +275 -0
  221. snappy/len_spec/word.py +86 -0
  222. snappy/manifolds/__init__.py +1 -1
  223. snappy/math_basics.py +176 -0
  224. snappy/matrix.py +525 -0
  225. snappy/number.py +97 -21
  226. snappy/numeric_output_checker.py +37 -27
  227. snappy/pari.py +30 -69
  228. snappy/phone_home.py +25 -20
  229. snappy/polyviewer.py +39 -37
  230. snappy/ptolemy/__init__.py +4 -6
  231. snappy/ptolemy/component.py +14 -12
  232. snappy/ptolemy/coordinates.py +312 -295
  233. snappy/ptolemy/fieldExtensions.py +14 -12
  234. snappy/ptolemy/findLoops.py +43 -31
  235. snappy/ptolemy/geometricRep.py +24 -26
  236. snappy/ptolemy/homology.py +12 -7
  237. snappy/ptolemy/manifoldMethods.py +69 -70
  238. snappy/ptolemy/matrix.py +65 -26
  239. snappy/ptolemy/numericalSolutionsToGroebnerBasis.py +18 -14
  240. snappy/ptolemy/polynomial.py +125 -119
  241. snappy/ptolemy/processComponents.py +36 -30
  242. snappy/ptolemy/processFileBase.py +79 -18
  243. snappy/ptolemy/processFileDispatch.py +13 -14
  244. snappy/ptolemy/processMagmaFile.py +44 -39
  245. snappy/ptolemy/processRurFile.py +18 -11
  246. snappy/ptolemy/ptolemyGeneralizedObstructionClass.py +20 -17
  247. snappy/ptolemy/ptolemyObstructionClass.py +13 -17
  248. snappy/ptolemy/ptolemyVariety.py +190 -121
  249. snappy/ptolemy/ptolemyVarietyPrimeIdealGroebnerBasis.py +20 -19
  250. snappy/ptolemy/reginaWrapper.py +25 -29
  251. snappy/ptolemy/rur.py +6 -14
  252. snappy/ptolemy/solutionsToPrimeIdealGroebnerBasis.py +27 -22
  253. snappy/ptolemy/test.py +247 -188
  254. snappy/ptolemy/utilities.py +41 -43
  255. snappy/raytracing/__init__.py +64 -0
  256. snappy/raytracing/additional_horospheres.py +64 -0
  257. snappy/raytracing/additional_len_spec_choices.py +63 -0
  258. snappy/raytracing/cohomology_fractal.py +10 -6
  259. snappy/raytracing/eyeball.py +123 -0
  260. snappy/raytracing/finite_raytracing_data.py +48 -38
  261. snappy/raytracing/finite_viewer.py +218 -210
  262. snappy/raytracing/geodesic_tube_info.py +174 -0
  263. snappy/raytracing/geodesics.py +246 -0
  264. snappy/raytracing/geodesics_window.py +258 -0
  265. snappy/raytracing/gui_utilities.py +152 -40
  266. snappy/raytracing/hyperboloid_navigation.py +102 -52
  267. snappy/raytracing/hyperboloid_utilities.py +114 -261
  268. snappy/raytracing/ideal_raytracing_data.py +256 -179
  269. snappy/raytracing/inside_viewer.py +522 -253
  270. snappy/raytracing/pack.py +22 -0
  271. snappy/raytracing/raytracing_data.py +46 -34
  272. snappy/raytracing/raytracing_view.py +190 -109
  273. snappy/raytracing/shaders/Eye.png +0 -0
  274. snappy/raytracing/shaders/NonGeometric.png +0 -0
  275. snappy/raytracing/shaders/__init__.py +60 -4
  276. snappy/raytracing/shaders/fragment.glsl +575 -148
  277. snappy/raytracing/test.py +29 -0
  278. snappy/raytracing/tooltip.py +146 -0
  279. snappy/raytracing/upper_halfspace_utilities.py +98 -0
  280. snappy/raytracing/view_scale_controller.py +98 -0
  281. snappy/raytracing/zoom_slider/__init__.py +32 -29
  282. snappy/raytracing/zoom_slider/test.py +2 -0
  283. snappy/sage_helper.py +69 -123
  284. snappy/{preferences.py → settings.py} +167 -145
  285. snappy/shell.py +4 -0
  286. snappy/snap/__init__.py +12 -8
  287. snappy/snap/character_varieties.py +24 -18
  288. snappy/snap/find_field.py +35 -34
  289. snappy/snap/fundamental_polyhedron.py +99 -85
  290. snappy/snap/generators.py +6 -8
  291. snappy/snap/interval_reps.py +18 -6
  292. snappy/snap/kernel_structures.py +8 -3
  293. snappy/snap/mcomplex_base.py +1 -2
  294. snappy/snap/nsagetools.py +107 -53
  295. snappy/snap/peripheral/__init__.py +1 -1
  296. snappy/snap/peripheral/dual_cellulation.py +15 -7
  297. snappy/snap/peripheral/link.py +20 -16
  298. snappy/snap/peripheral/peripheral.py +22 -14
  299. snappy/snap/peripheral/surface.py +47 -50
  300. snappy/snap/peripheral/test.py +8 -8
  301. snappy/snap/polished_reps.py +65 -40
  302. snappy/snap/shapes.py +41 -22
  303. snappy/snap/slice_obs_HKL.py +64 -25
  304. snappy/snap/t3mlite/arrow.py +88 -51
  305. snappy/snap/t3mlite/corner.py +5 -6
  306. snappy/snap/t3mlite/edge.py +32 -21
  307. snappy/snap/t3mlite/face.py +7 -9
  308. snappy/snap/t3mlite/files.py +31 -23
  309. snappy/snap/t3mlite/homology.py +14 -10
  310. snappy/snap/t3mlite/linalg.py +158 -56
  311. snappy/snap/t3mlite/mcomplex.py +739 -291
  312. snappy/snap/t3mlite/perm4.py +236 -84
  313. snappy/snap/t3mlite/setup.py +9 -10
  314. snappy/snap/t3mlite/simplex.py +65 -48
  315. snappy/snap/t3mlite/spun.py +42 -30
  316. snappy/snap/t3mlite/surface.py +45 -45
  317. snappy/snap/t3mlite/test.py +3 -0
  318. snappy/snap/t3mlite/test_vs_regina.py +17 -13
  319. snappy/snap/t3mlite/tetrahedron.py +25 -24
  320. snappy/snap/t3mlite/vertex.py +8 -13
  321. snappy/snap/test.py +45 -52
  322. snappy/snap/utilities.py +66 -65
  323. snappy/test.py +155 -158
  324. snappy/test_cases.py +263 -0
  325. snappy/testing.py +131 -0
  326. snappy/tiling/__init__.py +2 -0
  327. snappy/tiling/canonical_key_dict.py +59 -0
  328. snappy/tiling/dict_based_set.py +79 -0
  329. snappy/tiling/floor.py +49 -0
  330. snappy/tiling/hyperboloid_dict.py +54 -0
  331. snappy/tiling/iter_utils.py +78 -0
  332. snappy/tiling/lifted_tetrahedron.py +22 -0
  333. snappy/tiling/lifted_tetrahedron_set.py +54 -0
  334. snappy/tiling/real_hash_dict.py +164 -0
  335. snappy/tiling/test.py +23 -0
  336. snappy/tiling/tile.py +215 -0
  337. snappy/tiling/triangle.py +33 -0
  338. snappy/tkterminal.py +313 -203
  339. snappy/twister/main.py +1 -8
  340. snappy/twister/twister_core.cpython-38-darwin.so +0 -0
  341. snappy/upper_halfspace/__init__.py +146 -0
  342. snappy/upper_halfspace/ideal_point.py +26 -0
  343. snappy/verify/__init__.py +4 -8
  344. snappy/verify/{verifyCanonical.py → canonical.py} +114 -97
  345. snappy/verify/complex_volume/__init__.py +3 -2
  346. snappy/verify/complex_volume/adjust_torsion.py +13 -11
  347. snappy/verify/complex_volume/closed.py +29 -24
  348. snappy/verify/complex_volume/compute_ptolemys.py +8 -6
  349. snappy/verify/complex_volume/cusped.py +10 -9
  350. snappy/verify/complex_volume/extended_bloch.py +14 -12
  351. snappy/verify/{cuspTranslations.py → cusp_translations.py} +15 -14
  352. snappy/verify/edge_equations.py +80 -0
  353. snappy/verify/exceptions.py +23 -56
  354. snappy/verify/{verifyHyperbolicity.py → hyperbolicity.py} +19 -15
  355. snappy/verify/interval_newton_shapes_engine.py +51 -211
  356. snappy/verify/interval_tree.py +27 -25
  357. snappy/verify/krawczyk_shapes_engine.py +47 -50
  358. snappy/verify/maximal_cusp_area_matrix/__init__.py +17 -86
  359. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +58 -48
  360. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +53 -57
  361. snappy/verify/{realAlgebra.py → real_algebra.py} +26 -20
  362. snappy/verify/shapes.py +10 -7
  363. snappy/verify/short_slopes.py +41 -42
  364. snappy/verify/{squareExtensions.py → square_extensions.py} +96 -92
  365. snappy/verify/test.py +59 -57
  366. snappy/verify/upper_halfspace/extended_matrix.py +5 -5
  367. snappy/verify/upper_halfspace/finite_point.py +44 -31
  368. snappy/verify/upper_halfspace/ideal_point.py +69 -57
  369. snappy/verify/volume.py +15 -12
  370. snappy/version.py +2 -3
  371. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/METADATA +14 -12
  372. snappy-3.2.dist-info/RECORD +503 -0
  373. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/WHEEL +1 -1
  374. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/entry_points.txt +0 -1
  375. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/top_level.txt +10 -1
  376. snappy/doc/_sources/verify_canon.rst.txt +0 -90
  377. snappy/doc/_static/classic.css +0 -266
  378. snappy/doc/_static/jquery-3.5.1.js +0 -10872
  379. snappy/doc/_static/sidebar.js +0 -159
  380. snappy/doc/_static/underscore-1.13.1.js +0 -2042
  381. snappy/doc/_static/underscore.js +0 -6
  382. snappy/doc/verify_canon.html +0 -283
  383. snappy/ppm_to_png.py +0 -243
  384. snappy/togl/__init__.py +0 -3
  385. snappy/togl/darwin-tk8.6/Togl2.1/LICENSE +0 -28
  386. snappy/togl/darwin-tk8.6/Togl2.1/libTogl2.1.dylib +0 -0
  387. snappy/togl/darwin-tk8.6/Togl2.1/pkgIndex.tcl +0 -5
  388. snappy/togl/linux2-x86_64-tk8.6/Togl2.1/LICENSE +0 -28
  389. snappy/togl/linux2-x86_64-tk8.6/Togl2.1/libTogl2.1.so +0 -0
  390. snappy/togl/linux2-x86_64-tk8.6/Togl2.1/pkgIndex.tcl +0 -5
  391. snappy/togl/win32VC-tk8.6/Togl2.1/LICENSE +0 -28
  392. snappy/togl/win32VC-tk8.6/Togl2.1/Togl21.dll +0 -0
  393. snappy/togl/win32VC-tk8.6/Togl2.1/Togl21.lib +0 -0
  394. snappy/togl/win32VC-tk8.6/Togl2.1/pkgIndex.tcl +0 -6
  395. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/LICENSE +0 -28
  396. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/Togl21.dll +0 -0
  397. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/Togl21.lib +0 -0
  398. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/pkgIndex.tcl +0 -6
  399. snappy/verify/cuspCrossSection.py +0 -1413
  400. snappy/verify/mathHelpers.py +0 -64
  401. snappy-3.0.3.dist-info/RECORD +0 -360
@@ -1,8 +1,8 @@
1
- from snappy.SnapPy import matrix, vector
2
-
3
- from math import cos, sin, cosh, sinh, sqrt
4
-
5
- from snappy.snap.kernel_structures import Infinity
1
+ from ..hyperboloid import (r13_dot,
2
+ unit_time_vector_to_o13_hyperbolic_translation,
3
+ time_r13_normalise,
4
+ space_r13_normalise)
5
+ from ..matrix import make_vector, make_matrix
6
6
 
7
7
  """
8
8
  Helpers for the 1,3-hyperboloid model and conversion to upper half
@@ -22,29 +22,6 @@ Encoding:
22
22
  - matrices are either SnapPy matrices or SageMath matrices.
23
23
  """
24
24
 
25
- def unit_time_vector_to_O13_hyperbolic_translation(v):
26
- """
27
- Takes a point (time-like vector) in the hyperboloid model
28
- and returns the O13-matrix corresponding to the hyperbolic
29
- translation moving the origin to that point (that is, the
30
- translation fixing the geodesic between the origin and the
31
- point and introducing no rotation about that geodesic).
32
- """
33
-
34
- def diag(i, j):
35
- if i == j:
36
- if i == 0:
37
- return -1
38
- else:
39
- return 1
40
- return 0
41
-
42
- v1 = [1 + v[0]] + v[1:]
43
-
44
- return matrix(
45
- [[ x * y / (1 + v[0]) + diag(i, j)
46
- for i, x in enumerate(v1) ]
47
- for j, y in enumerate(v1) ])
48
25
 
49
26
  def unit_3_vector_and_distance_to_O13_hyperbolic_translation(v, d):
50
27
  """
@@ -54,47 +31,9 @@ def unit_3_vector_and_distance_to_O13_hyperbolic_translation(v, d):
54
31
  the given direction by the given distance.
55
32
  """
56
33
 
57
- return unit_time_vector_to_O13_hyperbolic_translation(
58
- [ cosh(d)] + [ sinh(d) * x for x in v])
59
-
60
- def _basis_vectors_sl2c(CF):
61
- return [ matrix([[ 1 , 0 ],
62
- [ 0, 1 ]], ring = CF),
63
- matrix([[ 1 , 0 ],
64
- [ 0 ,-1 ]], ring = CF),
65
- matrix([[ 0 , 1 ],
66
- [ 1 , 0 ]], ring = CF),
67
- matrix([[ 0 , 1j],
68
- [-1j, 0 ]], ring = CF) ]
69
-
70
- def _adjoint(m):
71
- return matrix([[ m[0][0].conjugate(), m[1][0].conjugate()],
72
- [ m[0][1].conjugate(), m[1][1].conjugate()]])
73
-
74
- def _o13_matrix_column(A, m):
75
- fAmj = A * m * _adjoint(A)
76
-
77
- return [ (fAmj[0][0].real() + fAmj[1][1].real()) / 2,
78
- (fAmj[0][0].real() - fAmj[1][1].real()) / 2,
79
- fAmj[0][1].real(),
80
- fAmj[0][1].imag() ]
81
-
82
- def PSL2C_to_O13(A):
83
- """
84
- Converts matrix in PSL(2,C) to O13.
85
- Python implementation of Moebius_to_O31 in matrix_conversion.c.
86
- """
87
-
88
- return matrix(
89
- [ _o13_matrix_column(A, m)
90
- for m in _basis_vectors_sl2c(A[0,0].parent()) ]).transpose()
34
+ return unit_time_vector_to_o13_hyperbolic_translation(
35
+ [ d.cosh()] + [ d.sinh() * x for x in v])
91
36
 
92
- def GL2C_to_O13(m):
93
- """
94
- Converts matrix in PGL(2,C) to O13.
95
- Python implementation of Moebius_to_O31 in matrix_conversion.c.
96
- """
97
- return PSL2C_to_O13(m / m.det().sqrt())
98
37
 
99
38
  def O13_x_rotation(angle):
100
39
  """
@@ -102,61 +41,42 @@ def O13_x_rotation(angle):
102
41
  by angle (in radians).
103
42
  """
104
43
 
105
- c = cos(angle)
106
- s = sin(angle)
107
- return matrix(
108
- [[ 1.0, 0.0, 0.0, 0.0],
109
- [ 0.0, 1.0, 0.0, 0.0],
110
- [ 0.0, 0.0, c, s],
111
- [ 0.0, 0.0, -s, c]])
44
+ c = angle.cos()
45
+ s = angle.sin()
46
+ return make_matrix(
47
+ [[ 1, 0, 0, 0],
48
+ [ 0, 1, 0, 0],
49
+ [ 0, 0, c, s],
50
+ [ 0, 0, -s, c]], ring=angle.parent())
51
+
112
52
 
113
53
  def O13_y_rotation(angle):
114
54
  """
115
55
  SO(1,3)-matrix corresponding to a rotation about the y-Axis
116
56
  by angle (in radians).
117
57
  """
118
- c = cos(angle)
119
- s = sin(angle)
120
- return matrix(
121
- [[ 1.0, 0.0, 0.0, 0.0],
122
- [ 0.0, c, 0.0, -s],
123
- [ 0.0, 0.0, 1.0, 0.0],
124
- [ 0.0, s, 0.0, c]])
58
+ c = angle.cos()
59
+ s = angle.sin()
60
+ return make_matrix(
61
+ [[ 1, 0, 0, 0],
62
+ [ 0, c, 0, -s],
63
+ [ 0, 0, 1, 0],
64
+ [ 0, s, 0, c]], ring=angle.parent())
65
+
125
66
 
126
67
  def O13_z_rotation(angle):
127
68
  """
128
69
  SO(1,3)-matrix corresponding to a rotation about the z-Axis
129
70
  by angle (in radians).
130
71
  """
131
- c = cos(angle)
132
- s = sin(angle)
133
- return matrix(
134
- [[ 1.0, 0.0, 0.0, 0.0],
135
- [ 0.0, c, s, 0.0],
136
- [ 0.0, -s, c, 0.0],
137
- [ 0.0, 0.0, 0.0, 1.0]])
138
-
139
- def complex_to_R13_light_vector(z):
140
- """
141
- Takes a point in C union { Infinity } regarded as boundary of the
142
- upper half space model of H^3. Returns the corresponding ideal
143
- point as light-vector in the 1,3-hyperboloid model.
144
- """
72
+ c = angle.cos()
73
+ s = angle.sin()
74
+ return make_matrix(
75
+ [[ 1, 0, 0, 0],
76
+ [ 0, c, s, 0],
77
+ [ 0, -s, c, 0],
78
+ [ 0, 0, 0, 1]], ring=angle.parent())
145
79
 
146
- if z == Infinity:
147
- return [ 1.0, 1.0, 0.0, 0.0 ]
148
-
149
- z_re = z.real()
150
- z_im = z.imag()
151
- z_abs_sqr = z_re ** 2 + z_im ** 2
152
- denom = z_abs_sqr + 1
153
-
154
- RF = z_re.parent()
155
-
156
- return [ RF(1.0),
157
- (z_abs_sqr - 1) / denom,
158
- 2 * z_re / denom,
159
- 2 * z_im / denom ]
160
80
 
161
81
  def complex_and_height_to_R13_time_vector(z, t):
162
82
  """
@@ -164,27 +84,29 @@ def complex_and_height_to_R13_time_vector(z, t):
164
84
  H^3 = { z + t * j : z in C, t > 0 } and gives the
165
85
  corresponding point in the 1,3-hyperboloid model.
166
86
  """
167
-
87
+
168
88
  z_re = z.real()
169
89
  z_im = z.imag()
170
90
  z_abs_sqr = z_re ** 2 + z_im ** 2
171
-
91
+
172
92
  denom = (z_abs_sqr + (t + 1) ** 2)
173
-
93
+
174
94
  poincare = [ (z_abs_sqr + t ** 2 - 1) / denom,
175
95
  (2 * z_re) / denom,
176
96
  (2 * z_im) / denom ]
177
97
 
178
98
  poincare_rsqr = sum([x**2 for x in poincare])
179
- klein_factor = 2.0 / (1 + poincare_rsqr)
99
+ klein_factor = 2 / (1 + poincare_rsqr)
180
100
 
181
101
  RF = z_re.parent()
182
102
 
183
103
  return R13_normalise(
184
- [ RF(1.0),
185
- klein_factor * poincare[0],
186
- klein_factor * poincare[1],
187
- klein_factor * poincare[2] ])
104
+ make_vector(
105
+ [ RF(1),
106
+ klein_factor * poincare[0],
107
+ klein_factor * poincare[1],
108
+ klein_factor * poincare[2] ]))
109
+
188
110
 
189
111
  def R13_time_vector_to_upper_halfspace(v):
190
112
  """
@@ -197,27 +119,17 @@ def R13_time_vector_to_upper_halfspace(v):
197
119
 
198
120
  klein = [ v[1] / v[0], v[2] / v[0], v[3] / v[0] ]
199
121
  klein_sqr = sum([x**2 for x in klein])
200
- poincare_factor = 1.0 / (1.0 + sqrt(1.0 - klein_sqr))
201
- a, b, c = [ x * poincare_factor for x in klein ]
122
+ poincare_factor = 1.0 / (1.0 + (1.0 - klein_sqr).sqrt())
123
+ a, b, c = ( x * poincare_factor for x in klein )
202
124
 
203
125
  denom = (a - 1.0) ** 2 + b ** 2 + c ** 2
204
- return [ 2.0 * b / denom,
205
- 2.0 * c / denom,
206
- (1.0 - a ** 2 - b ** 2 - c ** 2) / denom ]
126
+ return [ 2.0 * b / denom,
127
+ 2.0 * c / denom,
128
+ (1.0 - a ** 2 - b ** 2 - c ** 2) / denom ]
207
129
 
208
- def remove_column(m, k):
209
- """
210
- Removes k-th column from 4x4-matrix m.
211
- """
212
-
213
- return [ [ m[i][j] for j in range(4) if j != k ]
214
- for i in range(3) ]
215
130
 
216
- def R13_dot(u, v):
217
- return -u[0]*v[0] + u[1]*v[1] + u[2]*v[2] + u[3]*v[3]
218
-
219
- def R13_normalise(v, sign = 0):
220
- dot = R13_dot(v,v)
131
+ def R13_normalise(v, sign=0):
132
+ dot = r13_dot(v,v)
221
133
  if sign == 0:
222
134
  d = abs(dot)
223
135
  else:
@@ -225,129 +137,93 @@ def R13_normalise(v, sign = 0):
225
137
 
226
138
  denom = d.sqrt()
227
139
 
228
- return [ v[i] / denom for i in range(4) ]
140
+ return v / denom
141
+
142
+ def _is_vector_sane(v):
143
+ return all(-10000.0 < c and c < 10000.0 for c in v)
229
144
 
230
- def _is_row_sane(r):
231
- for c in r:
232
- if not (c < 10000.0 and c > -10000.0):
233
- return False
234
- return True
145
+ def _check_vector_sane(v):
146
+ if _is_vector_sane(v):
147
+ return v
148
+ raise ValueError()
235
149
 
236
150
  _signature = [-1, +1, +1, +1]
237
151
 
238
- def _orthonormalize_row(row, other_rows, row_sign):
239
- result = row
240
- for sign, other_row in zip(_signature, other_rows):
241
- s = sign * R13_dot(row, other_row)
242
- result = [ c - s * other_c
243
- for c, other_c in zip(result, other_row) ]
152
+ def _unit_four_vector(i, ring):
153
+ return make_vector([ring(1.0 if i == j else 0.0)
154
+ for j in range(4)])
155
+
156
+ def _time_r13_normalise_sane(v):
244
157
  try:
245
- result = R13_normalise(result, sign = row_sign)
158
+ return _check_vector_sane(
159
+ time_r13_normalise(v))
246
160
  except ValueError:
247
- return None
248
- if not _is_row_sane(result):
249
- return None
250
- return result
251
-
252
- def _orthonormalize_row_sane(row, fallback_value, other_rows, sign):
253
- r = _orthonormalize_row(row, other_rows, sign)
254
- if not r is None:
255
- return r
256
- r = _orthonormalize_row(fallback_value, other_rows, sign)
257
- if not r is None:
258
- return r
259
- return fallback_value
260
-
261
- def O13_orthonormalize(m):
262
- try:
263
- ring = m[0][0].parent()
264
- except AttributeError:
265
- ring = None
266
- id_matrix = matrix([[1.0, 0.0, 0.0, 0.0],
267
- [0.0, 1.0, 0.0, 0.0],
268
- [0.0, 0.0, 1.0, 0.0],
269
- [0.0, 0.0, 0.0, 1.0]],
270
- ring=ring)
271
-
272
- result = [ ]
273
- for row, id_row, sign in zip(m, id_matrix, _signature):
274
- result.append(_orthonormalize_row_sane(row, id_row, result, sign))
275
- return matrix(result, ring=ring)
276
-
277
- def _change_first_sign(u):
278
- return (-u[0], u[1], u[2], u[3])
279
-
280
- def edge_involution(u, v):
281
- """
282
- Takes two light-like vectors in the 1,3-hyperboloid model.
283
- Computes the O(1,3)-matrix rotating by pi about the line between
284
- the corresponding ideal points.
285
- """
286
-
287
- b0 = vector(R13_normalise(u + v))
288
- b1 = u - v
289
- b1 = vector(R13_normalise(b1 + b0 * R13_dot(b0, b1)))
290
- candidates = [ [ 0, 1, 0, 0], [ 0, 0, 1, 0], [ 0, 0, 0, 1] ]
291
- penalties_and_candidates = [ (abs(R13_dot(b1, c)), vector(c)) for c in candidates ]
292
- penalties_and_candidates.sort()
293
- b2 = penalties_and_candidates[0][1]
294
- b3 = penalties_and_candidates[1][1]
295
-
296
- b2 = vector(R13_normalise(b2 + b0 * R13_dot(b0, b2) - b1 * R13_dot(b1, b2)))
297
- b3 = vector(R13_normalise(b3 + b0 * R13_dot(b0, b3) - b1 * R13_dot(b1, b3) - b2 * R13_dot(b2, b3)))
298
-
299
- bs = [ b0, b1, b2, b3 ]
300
-
301
- m = [ matrix([[x * y for x in _change_first_sign(b)]
302
- for y in b]) for b in bs ]
303
-
304
- return - m[0] + m[1] - m[2] - m[3]
305
-
306
- def matrix3_det(m):
307
- return ( m[0][0] * m[1][1] * m[2][2]
308
- + m[0][1] * m[1][2] * m[2][0]
309
- + m[0][2] * m[1][0] * m[2][1]
310
- - m[0][2] * m[1][1] * m[2][0]
311
- - m[0][0] * m[1][2] * m[2][1]
312
- - m[0][1] * m[1][0] * m[2][2])
313
-
314
- def R13_plane_from_R13_light_vectors(light_vectors):
315
- """
316
- Given three light-like vectors, returns the normal to the plane
317
- spanned by the corresponding ideal points in the 1,3-hyperboloid
318
- model.
319
- """
161
+ pass
162
+ return _unit_four_vector(0, ring=v[0].parent())
320
163
 
321
- light_vectors = [ (-a, b, c, d) for a, b, c, d in light_vectors ]
322
- return R13_normalise(
323
- [ (-1) ** j * matrix3_det( remove_column(light_vectors, j) )
324
- for j in range(4) ])
325
-
326
- def make_tet_planes(tet_vert_positions):
327
- """
328
- Given four light-like vectors, returns the four normals for the
329
- for faces of the ideal tetrahedron spanned by the corresponding
330
- ideal points in the 1,3-hyperboloid model.
164
+ def _orthonormalise_row(row, previous_rows):
165
+ result = row
166
+ for j, previous_row in enumerate(previous_rows):
167
+ s = _signature[j] * r13_dot(row, previous_row)
168
+ result = result - s * previous_row
169
+ return space_r13_normalise(result)
331
170
 
332
- Outward facing for positively oriented tetrahedra.
171
+ def _orthonormalise_row_sane(row, previous_rows):
172
+ try:
173
+ return _check_vector_sane(
174
+ _orthonormalise_row(row, previous_rows))
175
+ except ValueError:
176
+ pass
177
+ ring = row[0].parent()
178
+ for i in range(3):
179
+ try:
180
+ v = _unit_four_vector(
181
+ (i + len(previous_rows) - 1) % 3 + 1,
182
+ ring)
183
+ return _check_vector_sane(
184
+ _orthonormalise_row(v, previous_rows))
185
+ except ValueError:
186
+ pass
187
+ return _unit_four_vector(len(previous_rows), ring)
188
+
189
+ def O13_orthonormalise(m):
190
+ """
191
+ The goal of the implementation here is to stably produce a sane
192
+ result (without large entries) so that no matter how badly the
193
+ camera view matrix gets beaten up, we will recover.
194
+
195
+ Also note that we operate on columns so that the position (image of
196
+ (1,0,0,0)) of the camera (unless it is way off and we fall back to
197
+ the origin for the position) is preserved (that is, just normalized).
198
+
199
+ We also preserve the x-axis (image of (0,1,0,0)) of the camera
200
+ frame as best as possible (project it into the tangent space of
201
+ the hyperboloid at the camera position). Note that the view
202
+ direction of the camera is the z-axis (image of (0,0,0,1).
203
+ So if the view direction of the camera needs to be preserved, you might
204
+ need to apply a matrix shuffling the x-, y-, and z-axis of the
205
+ camera before and after orthonormalisation.
333
206
  """
207
+
208
+ t = m.transpose() # Transpose to operate on columns
334
209
 
335
- v0, v1, v2, v3 = tet_vert_positions
336
- return [ R13_plane_from_R13_light_vectors([v1, v3, v2]),
337
- R13_plane_from_R13_light_vectors([v0, v2, v3]),
338
- R13_plane_from_R13_light_vectors([v0, v3, v1]),
339
- R13_plane_from_R13_light_vectors([v0, v1, v2]) ]
210
+ result = [ _time_r13_normalise_sane(make_vector(t[0])) ]
211
+ for row in t[1:]:
212
+ result.append(_orthonormalise_row_sane(make_vector(row), result))
213
+ return make_matrix(result).transpose()
340
214
 
341
215
  def complex_to_pair(z):
342
216
  """
343
217
  Returns a vector (x,y) given z = x + y * i.
344
218
  """
345
219
 
346
- return vector([z.real(), z.imag()])
220
+ return make_vector([z.real(), z.imag()])
221
+
347
222
 
348
223
  def _dist_from_projection(p, dir):
349
224
  return (p/dir).imag() * abs(dir)
350
225
 
226
+
351
227
  def height_euclidean_triangle(z0, z1, z2):
352
228
  """
353
229
  Takes three (ideal) points in C subset C union { Infinity}
@@ -356,26 +232,3 @@ def height_euclidean_triangle(z0, z1, z2):
356
232
  """
357
233
 
358
234
  return abs(_dist_from_projection(z0 - z1, z2 - z1))
359
-
360
- def _adjoint2(m):
361
- return matrix([[m[1,1], -m[0, 1]], [-m[1, 0], m[0, 0]]])
362
-
363
- def compute_so13_edge_involution(idealPoint0, idealPoint1):
364
- """
365
- Takes two (ideal) points in C subset C union { Infinity}
366
- regarded as boundary of the upper half space model.
367
- Computes the O(1,3)-matrix rotating by pi about the line between
368
- the corresponding ideal points.
369
- """
370
-
371
- ComplexField = idealPoint0.parent()
372
-
373
- m1 = matrix([ [ idealPoint0, idealPoint1],
374
- [ 1, 1]],
375
- ring = ComplexField)
376
- m2 = matrix([[-1,0],[0,1]],
377
- ring = ComplexField)
378
-
379
- gl2c_matrix = m1 * m2 * _adjoint2(m1)
380
-
381
- return GL2C_to_O13(gl2c_matrix)