snappy 3.0.3__cp38-cp38-macosx_11_0_arm64.whl → 3.2__cp38-cp38-macosx_11_0_arm64.whl

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  1. snappy/CyOpenGL.cpython-38-darwin.so +0 -0
  2. snappy/SnapPy.cpython-38-darwin.so +0 -0
  3. snappy/SnapPyHP.cpython-38-darwin.so +0 -0
  4. snappy/__init__.py +373 -426
  5. snappy/app.py +240 -75
  6. snappy/app_menus.py +93 -78
  7. snappy/browser.py +87 -63
  8. snappy/cache.py +5 -8
  9. snappy/canonical.py +249 -0
  10. snappy/{verify/cusp_shapes.py → cusps/__init__.py} +11 -19
  11. snappy/cusps/cusp_area_matrix.py +101 -0
  12. snappy/{verify/cusp_areas.py → cusps/cusp_areas_from_matrix.py} +39 -54
  13. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  14. snappy/cusps/test.py +21 -0
  15. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  16. snappy/database.py +40 -31
  17. snappy/db_utilities.py +13 -14
  18. snappy/decorated_isosig.py +377 -133
  19. snappy/dev/extended_ptolemy/complexVolumesClosed.py +42 -9
  20. snappy/dev/extended_ptolemy/extended.py +32 -25
  21. snappy/dev/extended_ptolemy/giac_rur.py +23 -8
  22. snappy/dev/extended_ptolemy/phc_wrapper.py +10 -10
  23. snappy/dev/vericlosed/computeApproxHyperbolicStructureOrb.py +2 -1
  24. snappy/dev/vericlosed/gimbalLoopFinder.py +5 -5
  25. snappy/dev/vericlosed/hyperbolicStructure.py +3 -3
  26. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +2 -2
  27. snappy/dev/vericlosed/truncatedComplex.py +3 -2
  28. snappy/dev/vericlosed/verifyHyperbolicStructureEngine.py +4 -3
  29. snappy/doc/_images/geodesics.jpg +0 -0
  30. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  31. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  32. snappy/doc/_images/o9_00000_systole_paper_plane.jpg +0 -0
  33. snappy/doc/_images/o9_00000_systole_paper_plane_closer.jpg +0 -0
  34. snappy/doc/_sources/additional_classes.rst.txt +1 -0
  35. snappy/doc/_sources/credits.rst.txt +6 -1
  36. snappy/doc/_sources/development.rst.txt +69 -50
  37. snappy/doc/_sources/index.rst.txt +101 -66
  38. snappy/doc/_sources/installing.rst.txt +148 -165
  39. snappy/doc/_sources/news.rst.txt +136 -32
  40. snappy/doc/_sources/ptolemy.rst.txt +1 -1
  41. snappy/doc/_sources/ptolemy_examples1.rst.txt +9 -8
  42. snappy/doc/_sources/ptolemy_examples2.rst.txt +3 -3
  43. snappy/doc/_sources/ptolemy_examples3.rst.txt +14 -14
  44. snappy/doc/_sources/ptolemy_prelim.rst.txt +1 -1
  45. snappy/doc/_sources/snap.rst.txt +2 -2
  46. snappy/doc/_sources/snappy.rst.txt +1 -1
  47. snappy/doc/_sources/triangulation.rst.txt +3 -2
  48. snappy/doc/_sources/verify.rst.txt +89 -29
  49. snappy/doc/_sources/verify_internals.rst.txt +5 -16
  50. snappy/doc/_static/SnapPy-horizontal-128.png +0 -0
  51. snappy/doc/_static/SnapPy.ico +0 -0
  52. snappy/doc/_static/_sphinx_javascript_frameworks_compat.js +123 -0
  53. snappy/doc/_static/basic.css +47 -27
  54. snappy/doc/_static/css/badge_only.css +1 -0
  55. snappy/doc/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
  56. snappy/doc/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
  57. snappy/doc/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
  58. snappy/doc/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
  59. snappy/doc/_static/css/fonts/fontawesome-webfont.eot +0 -0
  60. snappy/doc/_static/css/fonts/fontawesome-webfont.svg +2671 -0
  61. snappy/doc/_static/css/fonts/fontawesome-webfont.ttf +0 -0
  62. snappy/doc/_static/css/fonts/fontawesome-webfont.woff +0 -0
  63. snappy/doc/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
  64. snappy/doc/_static/css/fonts/lato-bold-italic.woff +0 -0
  65. snappy/doc/_static/css/fonts/lato-bold-italic.woff2 +0 -0
  66. snappy/doc/_static/css/fonts/lato-bold.woff +0 -0
  67. snappy/doc/_static/css/fonts/lato-bold.woff2 +0 -0
  68. snappy/doc/_static/css/fonts/lato-normal-italic.woff +0 -0
  69. snappy/doc/_static/css/fonts/lato-normal-italic.woff2 +0 -0
  70. snappy/doc/_static/css/fonts/lato-normal.woff +0 -0
  71. snappy/doc/_static/css/fonts/lato-normal.woff2 +0 -0
  72. snappy/doc/_static/css/theme.css +4 -0
  73. snappy/doc/_static/doctools.js +107 -274
  74. snappy/doc/_static/documentation_options.js +6 -5
  75. snappy/doc/_static/fonts/Lato/lato-bold.eot +0 -0
  76. snappy/doc/_static/fonts/Lato/lato-bold.ttf +0 -0
  77. snappy/doc/_static/fonts/Lato/lato-bold.woff +0 -0
  78. snappy/doc/_static/fonts/Lato/lato-bold.woff2 +0 -0
  79. snappy/doc/_static/fonts/Lato/lato-bolditalic.eot +0 -0
  80. snappy/doc/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
  81. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff +0 -0
  82. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
  83. snappy/doc/_static/fonts/Lato/lato-italic.eot +0 -0
  84. snappy/doc/_static/fonts/Lato/lato-italic.ttf +0 -0
  85. snappy/doc/_static/fonts/Lato/lato-italic.woff +0 -0
  86. snappy/doc/_static/fonts/Lato/lato-italic.woff2 +0 -0
  87. snappy/doc/_static/fonts/Lato/lato-regular.eot +0 -0
  88. snappy/doc/_static/fonts/Lato/lato-regular.ttf +0 -0
  89. snappy/doc/_static/fonts/Lato/lato-regular.woff +0 -0
  90. snappy/doc/_static/fonts/Lato/lato-regular.woff2 +0 -0
  91. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
  92. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
  93. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
  94. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
  95. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
  96. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
  97. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
  98. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
  99. snappy/doc/_static/jquery.js +2 -2
  100. snappy/doc/_static/js/badge_only.js +1 -0
  101. snappy/doc/_static/js/theme.js +1 -0
  102. snappy/doc/_static/js/versions.js +228 -0
  103. snappy/doc/_static/language_data.js +3 -101
  104. snappy/doc/_static/pygments.css +1 -0
  105. snappy/doc/_static/searchtools.js +489 -398
  106. snappy/doc/_static/snappy_furo.css +33 -0
  107. snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -0
  108. snappy/doc/_static/sphinx_highlight.js +154 -0
  109. snappy/doc/additional_classes.html +688 -263
  110. snappy/doc/bugs.html +107 -94
  111. snappy/doc/censuses.html +155 -127
  112. snappy/doc/credits.html +115 -104
  113. snappy/doc/development.html +184 -146
  114. snappy/doc/genindex.html +287 -204
  115. snappy/doc/index.html +189 -150
  116. snappy/doc/installing.html +259 -266
  117. snappy/doc/manifold.html +1626 -592
  118. snappy/doc/manifoldhp.html +119 -105
  119. snappy/doc/news.html +198 -104
  120. snappy/doc/objects.inv +0 -0
  121. snappy/doc/other.html +117 -105
  122. snappy/doc/platonic_census.html +161 -114
  123. snappy/doc/plink.html +113 -105
  124. snappy/doc/ptolemy.html +131 -108
  125. snappy/doc/ptolemy_classes.html +242 -223
  126. snappy/doc/ptolemy_examples1.html +144 -130
  127. snappy/doc/ptolemy_examples2.html +141 -129
  128. snappy/doc/ptolemy_examples3.html +148 -132
  129. snappy/doc/ptolemy_examples4.html +131 -111
  130. snappy/doc/ptolemy_prelim.html +162 -138
  131. snappy/doc/py-modindex.html +104 -69
  132. snappy/doc/screenshots.html +117 -108
  133. snappy/doc/search.html +115 -84
  134. snappy/doc/searchindex.js +1 -1
  135. snappy/doc/snap.html +109 -96
  136. snappy/doc/snappy.html +134 -97
  137. snappy/doc/spherogram.html +259 -187
  138. snappy/doc/todo.html +107 -94
  139. snappy/doc/triangulation.html +1380 -111
  140. snappy/doc/tutorial.html +107 -94
  141. snappy/doc/verify.html +194 -125
  142. snappy/doc/verify_internals.html +248 -686
  143. snappy/drilling/__init__.py +456 -0
  144. snappy/drilling/barycentric.py +103 -0
  145. snappy/drilling/constants.py +5 -0
  146. snappy/drilling/crush.py +270 -0
  147. snappy/drilling/cusps.py +125 -0
  148. snappy/drilling/debug.py +242 -0
  149. snappy/drilling/epsilons.py +6 -0
  150. snappy/drilling/exceptions.py +55 -0
  151. snappy/drilling/moves.py +620 -0
  152. snappy/drilling/peripheral_curves.py +210 -0
  153. snappy/drilling/perturb.py +188 -0
  154. snappy/drilling/shorten.py +36 -0
  155. snappy/drilling/subdivide.py +274 -0
  156. snappy/drilling/test.py +23 -0
  157. snappy/drilling/test_cases.py +126 -0
  158. snappy/drilling/tracing.py +351 -0
  159. snappy/exceptions.py +23 -3
  160. snappy/export_stl.py +20 -14
  161. snappy/exterior_to_link/__init__.py +2 -0
  162. snappy/exterior_to_link/barycentric_geometry.py +463 -0
  163. snappy/exterior_to_link/exceptions.py +6 -0
  164. snappy/exterior_to_link/geodesic_map.json +14408 -0
  165. snappy/exterior_to_link/hyp_utils.py +112 -0
  166. snappy/exterior_to_link/link_projection.py +323 -0
  167. snappy/exterior_to_link/main.py +197 -0
  168. snappy/exterior_to_link/mcomplex_with_expansion.py +261 -0
  169. snappy/exterior_to_link/mcomplex_with_link.py +687 -0
  170. snappy/exterior_to_link/mcomplex_with_memory.py +162 -0
  171. snappy/exterior_to_link/pl_utils.py +491 -0
  172. snappy/exterior_to_link/put_in_S3.py +156 -0
  173. snappy/exterior_to_link/rational_linear_algebra.py +123 -0
  174. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +135 -0
  175. snappy/exterior_to_link/simplify_to_base_tri.py +114 -0
  176. snappy/exterior_to_link/stored_moves.py +475 -0
  177. snappy/exterior_to_link/test.py +31 -0
  178. snappy/geometric_structure/__init__.py +212 -0
  179. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  180. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  181. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  182. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  183. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  184. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  185. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  186. snappy/geometric_structure/geodesic/__init__.py +0 -0
  187. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  188. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  189. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  190. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  191. snappy/geometric_structure/geodesic/constants.py +6 -0
  192. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  193. snappy/geometric_structure/geodesic/fixed_points.py +93 -0
  194. snappy/geometric_structure/geodesic/geodesic_start_point_info.py +435 -0
  195. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  196. snappy/geometric_structure/geodesic/line.py +30 -0
  197. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  198. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  199. snappy/geometric_structure/test.py +22 -0
  200. snappy/gui.py +36 -36
  201. snappy/horoviewer.py +50 -48
  202. snappy/hyperboloid/__init__.py +212 -0
  203. snappy/hyperboloid/distances.py +245 -0
  204. snappy/hyperboloid/horoball.py +19 -0
  205. snappy/hyperboloid/line.py +35 -0
  206. snappy/hyperboloid/point.py +9 -0
  207. snappy/hyperboloid/triangle.py +29 -0
  208. snappy/{infodialog.py → infowindow.py} +32 -33
  209. snappy/isometry_signature.py +382 -0
  210. snappy/len_spec/__init__.py +596 -0
  211. snappy/len_spec/geodesic_info.py +110 -0
  212. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  213. snappy/len_spec/geodesic_piece.py +143 -0
  214. snappy/len_spec/geometric_structure.py +182 -0
  215. snappy/len_spec/geometry.py +80 -0
  216. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
  217. snappy/len_spec/spine.py +206 -0
  218. snappy/len_spec/test.py +24 -0
  219. snappy/len_spec/test_cases.py +69 -0
  220. snappy/len_spec/tile.py +275 -0
  221. snappy/len_spec/word.py +86 -0
  222. snappy/manifolds/__init__.py +1 -1
  223. snappy/math_basics.py +176 -0
  224. snappy/matrix.py +525 -0
  225. snappy/number.py +97 -21
  226. snappy/numeric_output_checker.py +37 -27
  227. snappy/pari.py +30 -69
  228. snappy/phone_home.py +25 -20
  229. snappy/polyviewer.py +39 -37
  230. snappy/ptolemy/__init__.py +4 -6
  231. snappy/ptolemy/component.py +14 -12
  232. snappy/ptolemy/coordinates.py +312 -295
  233. snappy/ptolemy/fieldExtensions.py +14 -12
  234. snappy/ptolemy/findLoops.py +43 -31
  235. snappy/ptolemy/geometricRep.py +24 -26
  236. snappy/ptolemy/homology.py +12 -7
  237. snappy/ptolemy/manifoldMethods.py +69 -70
  238. snappy/ptolemy/matrix.py +65 -26
  239. snappy/ptolemy/numericalSolutionsToGroebnerBasis.py +18 -14
  240. snappy/ptolemy/polynomial.py +125 -119
  241. snappy/ptolemy/processComponents.py +36 -30
  242. snappy/ptolemy/processFileBase.py +79 -18
  243. snappy/ptolemy/processFileDispatch.py +13 -14
  244. snappy/ptolemy/processMagmaFile.py +44 -39
  245. snappy/ptolemy/processRurFile.py +18 -11
  246. snappy/ptolemy/ptolemyGeneralizedObstructionClass.py +20 -17
  247. snappy/ptolemy/ptolemyObstructionClass.py +13 -17
  248. snappy/ptolemy/ptolemyVariety.py +190 -121
  249. snappy/ptolemy/ptolemyVarietyPrimeIdealGroebnerBasis.py +20 -19
  250. snappy/ptolemy/reginaWrapper.py +25 -29
  251. snappy/ptolemy/rur.py +6 -14
  252. snappy/ptolemy/solutionsToPrimeIdealGroebnerBasis.py +27 -22
  253. snappy/ptolemy/test.py +247 -188
  254. snappy/ptolemy/utilities.py +41 -43
  255. snappy/raytracing/__init__.py +64 -0
  256. snappy/raytracing/additional_horospheres.py +64 -0
  257. snappy/raytracing/additional_len_spec_choices.py +63 -0
  258. snappy/raytracing/cohomology_fractal.py +10 -6
  259. snappy/raytracing/eyeball.py +123 -0
  260. snappy/raytracing/finite_raytracing_data.py +48 -38
  261. snappy/raytracing/finite_viewer.py +218 -210
  262. snappy/raytracing/geodesic_tube_info.py +174 -0
  263. snappy/raytracing/geodesics.py +246 -0
  264. snappy/raytracing/geodesics_window.py +258 -0
  265. snappy/raytracing/gui_utilities.py +152 -40
  266. snappy/raytracing/hyperboloid_navigation.py +102 -52
  267. snappy/raytracing/hyperboloid_utilities.py +114 -261
  268. snappy/raytracing/ideal_raytracing_data.py +256 -179
  269. snappy/raytracing/inside_viewer.py +522 -253
  270. snappy/raytracing/pack.py +22 -0
  271. snappy/raytracing/raytracing_data.py +46 -34
  272. snappy/raytracing/raytracing_view.py +190 -109
  273. snappy/raytracing/shaders/Eye.png +0 -0
  274. snappy/raytracing/shaders/NonGeometric.png +0 -0
  275. snappy/raytracing/shaders/__init__.py +60 -4
  276. snappy/raytracing/shaders/fragment.glsl +575 -148
  277. snappy/raytracing/test.py +29 -0
  278. snappy/raytracing/tooltip.py +146 -0
  279. snappy/raytracing/upper_halfspace_utilities.py +98 -0
  280. snappy/raytracing/view_scale_controller.py +98 -0
  281. snappy/raytracing/zoom_slider/__init__.py +32 -29
  282. snappy/raytracing/zoom_slider/test.py +2 -0
  283. snappy/sage_helper.py +69 -123
  284. snappy/{preferences.py → settings.py} +167 -145
  285. snappy/shell.py +4 -0
  286. snappy/snap/__init__.py +12 -8
  287. snappy/snap/character_varieties.py +24 -18
  288. snappy/snap/find_field.py +35 -34
  289. snappy/snap/fundamental_polyhedron.py +99 -85
  290. snappy/snap/generators.py +6 -8
  291. snappy/snap/interval_reps.py +18 -6
  292. snappy/snap/kernel_structures.py +8 -3
  293. snappy/snap/mcomplex_base.py +1 -2
  294. snappy/snap/nsagetools.py +107 -53
  295. snappy/snap/peripheral/__init__.py +1 -1
  296. snappy/snap/peripheral/dual_cellulation.py +15 -7
  297. snappy/snap/peripheral/link.py +20 -16
  298. snappy/snap/peripheral/peripheral.py +22 -14
  299. snappy/snap/peripheral/surface.py +47 -50
  300. snappy/snap/peripheral/test.py +8 -8
  301. snappy/snap/polished_reps.py +65 -40
  302. snappy/snap/shapes.py +41 -22
  303. snappy/snap/slice_obs_HKL.py +64 -25
  304. snappy/snap/t3mlite/arrow.py +88 -51
  305. snappy/snap/t3mlite/corner.py +5 -6
  306. snappy/snap/t3mlite/edge.py +32 -21
  307. snappy/snap/t3mlite/face.py +7 -9
  308. snappy/snap/t3mlite/files.py +31 -23
  309. snappy/snap/t3mlite/homology.py +14 -10
  310. snappy/snap/t3mlite/linalg.py +158 -56
  311. snappy/snap/t3mlite/mcomplex.py +739 -291
  312. snappy/snap/t3mlite/perm4.py +236 -84
  313. snappy/snap/t3mlite/setup.py +9 -10
  314. snappy/snap/t3mlite/simplex.py +65 -48
  315. snappy/snap/t3mlite/spun.py +42 -30
  316. snappy/snap/t3mlite/surface.py +45 -45
  317. snappy/snap/t3mlite/test.py +3 -0
  318. snappy/snap/t3mlite/test_vs_regina.py +17 -13
  319. snappy/snap/t3mlite/tetrahedron.py +25 -24
  320. snappy/snap/t3mlite/vertex.py +8 -13
  321. snappy/snap/test.py +45 -52
  322. snappy/snap/utilities.py +66 -65
  323. snappy/test.py +155 -158
  324. snappy/test_cases.py +263 -0
  325. snappy/testing.py +131 -0
  326. snappy/tiling/__init__.py +2 -0
  327. snappy/tiling/canonical_key_dict.py +59 -0
  328. snappy/tiling/dict_based_set.py +79 -0
  329. snappy/tiling/floor.py +49 -0
  330. snappy/tiling/hyperboloid_dict.py +54 -0
  331. snappy/tiling/iter_utils.py +78 -0
  332. snappy/tiling/lifted_tetrahedron.py +22 -0
  333. snappy/tiling/lifted_tetrahedron_set.py +54 -0
  334. snappy/tiling/real_hash_dict.py +164 -0
  335. snappy/tiling/test.py +23 -0
  336. snappy/tiling/tile.py +215 -0
  337. snappy/tiling/triangle.py +33 -0
  338. snappy/tkterminal.py +313 -203
  339. snappy/twister/main.py +1 -8
  340. snappy/twister/twister_core.cpython-38-darwin.so +0 -0
  341. snappy/upper_halfspace/__init__.py +146 -0
  342. snappy/upper_halfspace/ideal_point.py +26 -0
  343. snappy/verify/__init__.py +4 -8
  344. snappy/verify/{verifyCanonical.py → canonical.py} +114 -97
  345. snappy/verify/complex_volume/__init__.py +3 -2
  346. snappy/verify/complex_volume/adjust_torsion.py +13 -11
  347. snappy/verify/complex_volume/closed.py +29 -24
  348. snappy/verify/complex_volume/compute_ptolemys.py +8 -6
  349. snappy/verify/complex_volume/cusped.py +10 -9
  350. snappy/verify/complex_volume/extended_bloch.py +14 -12
  351. snappy/verify/{cuspTranslations.py → cusp_translations.py} +15 -14
  352. snappy/verify/edge_equations.py +80 -0
  353. snappy/verify/exceptions.py +23 -56
  354. snappy/verify/{verifyHyperbolicity.py → hyperbolicity.py} +19 -15
  355. snappy/verify/interval_newton_shapes_engine.py +51 -211
  356. snappy/verify/interval_tree.py +27 -25
  357. snappy/verify/krawczyk_shapes_engine.py +47 -50
  358. snappy/verify/maximal_cusp_area_matrix/__init__.py +17 -86
  359. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +58 -48
  360. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +53 -57
  361. snappy/verify/{realAlgebra.py → real_algebra.py} +26 -20
  362. snappy/verify/shapes.py +10 -7
  363. snappy/verify/short_slopes.py +41 -42
  364. snappy/verify/{squareExtensions.py → square_extensions.py} +96 -92
  365. snappy/verify/test.py +59 -57
  366. snappy/verify/upper_halfspace/extended_matrix.py +5 -5
  367. snappy/verify/upper_halfspace/finite_point.py +44 -31
  368. snappy/verify/upper_halfspace/ideal_point.py +69 -57
  369. snappy/verify/volume.py +15 -12
  370. snappy/version.py +2 -3
  371. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/METADATA +14 -12
  372. snappy-3.2.dist-info/RECORD +503 -0
  373. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/WHEEL +1 -1
  374. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/entry_points.txt +0 -1
  375. {snappy-3.0.3.dist-info → snappy-3.2.dist-info}/top_level.txt +10 -1
  376. snappy/doc/_sources/verify_canon.rst.txt +0 -90
  377. snappy/doc/_static/classic.css +0 -266
  378. snappy/doc/_static/jquery-3.5.1.js +0 -10872
  379. snappy/doc/_static/sidebar.js +0 -159
  380. snappy/doc/_static/underscore-1.13.1.js +0 -2042
  381. snappy/doc/_static/underscore.js +0 -6
  382. snappy/doc/verify_canon.html +0 -283
  383. snappy/ppm_to_png.py +0 -243
  384. snappy/togl/__init__.py +0 -3
  385. snappy/togl/darwin-tk8.6/Togl2.1/LICENSE +0 -28
  386. snappy/togl/darwin-tk8.6/Togl2.1/libTogl2.1.dylib +0 -0
  387. snappy/togl/darwin-tk8.6/Togl2.1/pkgIndex.tcl +0 -5
  388. snappy/togl/linux2-x86_64-tk8.6/Togl2.1/LICENSE +0 -28
  389. snappy/togl/linux2-x86_64-tk8.6/Togl2.1/libTogl2.1.so +0 -0
  390. snappy/togl/linux2-x86_64-tk8.6/Togl2.1/pkgIndex.tcl +0 -5
  391. snappy/togl/win32VC-tk8.6/Togl2.1/LICENSE +0 -28
  392. snappy/togl/win32VC-tk8.6/Togl2.1/Togl21.dll +0 -0
  393. snappy/togl/win32VC-tk8.6/Togl2.1/Togl21.lib +0 -0
  394. snappy/togl/win32VC-tk8.6/Togl2.1/pkgIndex.tcl +0 -6
  395. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/LICENSE +0 -28
  396. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/Togl21.dll +0 -0
  397. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/Togl21.lib +0 -0
  398. snappy/togl/win32VC-x86_64-tk8.6/Togl2.1/pkgIndex.tcl +0 -6
  399. snappy/verify/cuspCrossSection.py +0 -1413
  400. snappy/verify/mathHelpers.py +0 -64
  401. snappy-3.0.3.dist-info/RECORD +0 -360
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  <section id="step-by-step-examples-part-2">
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- <h1>Step-by-step examples: Part 2<a class="headerlink" href="#step-by-step-examples-part-2" title="Permalink to this headline">¶</a></h1>
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+ <h1>Step-by-step examples: Part 2<a class="headerlink" href="#step-by-step-examples-part-2" title="Link to this heading"></a></h1>
52
111
  <section id="the-ptolemy-list-type">
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- <span id="ptolemy-example-smart-lists"></span><h2>The Ptolemy list type<a class="headerlink" href="#the-ptolemy-list-type" title="Permalink to this headline">¶</a></h2>
112
+ <span id="ptolemy-example-smart-lists"></span><h2>The Ptolemy list type<a class="headerlink" href="#the-ptolemy-list-type" title="Link to this heading"></a></h2>
54
113
  <p>Recall that <code class="docutils literal notranslate"><span class="pre">ptolemy_variety</span></code> with <code class="docutils literal notranslate"><span class="pre">obstruction_class='all'</span></code> returns a list of varieties, one for each obstruction class:</p>
55
114
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">M</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span>
56
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">M</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="n">obstruction_class</span> <span class="o">=</span> <span class="s1">&#39;all&#39;</span><span class="p">)</span>
@@ -93,7 +152,7 @@ the given arguments (here <code class="docutils literal notranslate"><span class
93
152
  <p>Since <code class="docutils literal notranslate"><span class="pre">retrieve_solutions</span></code> itself actually returns a list, the result is a list of lists of solutions which are of type <code class="docutils literal notranslate"><span class="pre">PtolemyCoordinates</span></code>. The first level groups the solutions by obstruction class. The inner lists contain the different (non-Galois conjugate) solutions for each obstruction class (here, for <code class="docutils literal notranslate"><span class="pre">m003</span></code>, each inner lists contains only one element).</p>
94
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  </section>
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  <section id="using-the-ptolemy-list-type-recursively">
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- <h2>Using the Ptolemy list type recursively<a class="headerlink" href="#using-the-ptolemy-list-type-recursively" title="Permalink to this headline">¶</a></h2>
155
+ <h2>Using the Ptolemy list type recursively<a class="headerlink" href="#using-the-ptolemy-list-type-recursively" title="Link to this heading"></a></h2>
97
156
  <p>The list type described in the previous example works recursively. Recall that an algebraic solution to a Ptolemy variety (of type <code class="docutils literal notranslate"><span class="pre">PtolemyCoordinates</span></code>) has a method <code class="docutils literal notranslate"><span class="pre">volume_numerical</span></code> that returns a list of volumes:</p>
98
157
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">M</span><span class="o">=</span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span>
99
158
  <span class="gp">&gt;&gt;&gt; </span><span class="n">p</span><span class="o">=</span><span class="n">M</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="mi">1</span><span class="p">)</span>
@@ -102,7 +161,7 @@ the given arguments (here <code class="docutils literal notranslate"><span class
102
161
  <span class="go">[0.E-19, 1.88267370443418 E-14]</span>
103
162
  </pre></div>
104
163
  </div>
105
- <p>We can chain these commands together to retrieve the volumes of all boundary-unpotent PSL(2, <strong>C</strong>) (that are <a class="reference internal" href="ptolemy_prelim.html#ptolemy-generically-decorated"><span class="std std-ref">generically decorated</span></a> with respect to the triangulation) in just one line:</p>
164
+ <p>We can chain these commands together to retrieve the volumes of all boundary-unipotent PSL(2, <strong>C</strong>) (that are <a class="reference internal" href="ptolemy_prelim.html#ptolemy-generically-decorated"><span class="std std-ref">generically decorated</span></a> with respect to the triangulation) in just one line:</p>
106
165
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">volume_numerical</span><span class="p">()</span>
107
166
  <span class="go">[[[0.E-19, 1.88267370443418 E-14]], [[2.02988321281931, -2.02988321281931]]]</span>
108
167
  </pre></div>
@@ -112,7 +171,7 @@ the given arguments (here <code class="docutils literal notranslate"><span class
112
171
  <p><strong>Remark:</strong> Unfortunately, this is not compatible with tab-autocompletion, see <a class="reference internal" href="#ptolemy-example-missing-auto-completion"><span class="std std-ref">later</span></a>.</p>
113
172
  </section>
114
173
  <section id="a-comparison-of-m003-and-m004">
115
- <h2>A comparison of <code class="docutils literal notranslate"><span class="pre">m003</span></code> and <code class="docutils literal notranslate"><span class="pre">m004</span></code><a class="headerlink" href="#a-comparison-of-m003-and-m004" title="Permalink to this headline">¶</a></h2>
174
+ <h2>A comparison of <code class="docutils literal notranslate"><span class="pre">m003</span></code> and <code class="docutils literal notranslate"><span class="pre">m004</span></code><a class="headerlink" href="#a-comparison-of-m003-and-m004" title="Link to this heading"></a></h2>
116
175
  <p>We can now compare the set of volumes of <code class="docutils literal notranslate"><span class="pre">m003</span></code> and <code class="docutils literal notranslate"><span class="pre">m004</span></code>:</p>
117
176
  <div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">volume_numerical</span><span class="p">()</span>
118
177
  <span class="go">[[[0.E-19, 1.88267370443418 E-14]], [[2.02988321281931, -2.02988321281931]]]</span>
@@ -123,7 +182,7 @@ the given arguments (here <code class="docutils literal notranslate"><span class
123
182
  <p>We see that the two manifolds are distinguished by their volumes of boundary-unipotent representations: <code class="docutils literal notranslate"><span class="pre">m004</span></code> has no representation with trivial volume (this is not a proof as in theory, there could be such a representation which is not <a class="reference internal" href="ptolemy_prelim.html#ptolemy-generically-decorated"><span class="std std-ref">generically decorated</span></a> with respect to the given triangulation) and no representation that can be lifted to a boundary-unipotent SL(2, <strong>C</strong>)-representation.</p>
124
183
  </section>
125
184
  <section id="a-non-hyperbolic-example">
126
- <h2>A non-hyperbolic example<a class="headerlink" href="#a-non-hyperbolic-example" title="Permalink to this headline">¶</a></h2>
185
+ <h2>A non-hyperbolic example<a class="headerlink" href="#a-non-hyperbolic-example" title="Link to this heading"></a></h2>
127
186
  <p>We can also compute the volumes for a manifold that might be non-hyperbolic, here the complement of the 5<sub>1</sub> knot:</p>
128
187
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;5_1&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">volume_numerical</span><span class="p">()</span>
129
188
  <span class="go">[[], [[1.52310839130992 E-14, 0.E-37]]]</span>
@@ -133,13 +192,13 @@ the given arguments (here <code class="docutils literal notranslate"><span class
133
192
  <p><strong>Remark:</strong> The ptolemy module does not (yet) support interval arithmetics, otherwise, this would be a proof that 5<sub>1</sub> is not hyperbolic.</p>
134
193
  </section>
135
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  <section id="flattening-nested-structures">
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- <h2>Flattening nested structures<a class="headerlink" href="#flattening-nested-structures" title="Permalink to this headline">¶</a></h2>
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- <p>If we want to loose some of the groupping, we can call <code class="docutils literal notranslate"><span class="pre">flatten</span></code> on the results. Here the grouping by obstruction class is lost:</p>
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+ <h2>Flattening nested structures<a class="headerlink" href="#flattening-nested-structures" title="Link to this heading"></a></h2>
196
+ <p>If we want to loose some of the grouping, we can call <code class="docutils literal notranslate"><span class="pre">flatten</span></code> on the results. Here the grouping by obstruction class is lost:</p>
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">volume_numerical</span><span class="p">()</span><span class="o">.</span><span class="n">flatten</span><span class="p">()</span>
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  <span class="go">[[0.E-19, 1.88267370443418 E-14], [2.02988321281931, -2.02988321281931]]</span>
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  </pre></div>
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  </div>
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- <p>And now, the groupping by Galois conjugacy is lost as well, resulting in a flat list:</p>
201
+ <p>And now, the grouping by Galois conjugacy is lost as well, resulting in a flat list:</p>
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">volume_numerical</span><span class="p">()</span><span class="o">.</span><span class="n">flatten</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
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  <span class="go">[0.E-19, 1.88267370443418 E-14, 2.02988321281931, -2.02988321281931]</span>
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  </pre></div>
@@ -148,7 +207,7 @@ the given arguments (here <code class="docutils literal notranslate"><span class
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  <p><strong>Remark:</strong> We cannot <cite>overflatten</cite>. If we give an even larger argument to flatten, the result will just stay a flat list.</p>
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  </section>
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  <section id="lack-of-tab-autocompletion-for-nested-structures">
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- <span id="ptolemy-example-missing-auto-completion"></span><h2>Lack of tab-autocompletion for nested structures<a class="headerlink" href="#lack-of-tab-autocompletion-for-nested-structures" title="Permalink to this headline">¶</a></h2>
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+ <span id="ptolemy-example-missing-auto-completion"></span><h2>Lack of tab-autocompletion for nested structures<a class="headerlink" href="#lack-of-tab-autocompletion-for-nested-structures" title="Link to this heading"></a></h2>
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  <p>Unfortunately, the autocompletion does not list all the desired results when we have a nested structure. For example:</p>
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">sols</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">sols</span><span class="o">.</span>
@@ -165,14 +224,14 @@ the given arguments (here <code class="docutils literal notranslate"><span class
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">sol</span><span class="o">.</span>
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  <span class="go">sol.N sol.keys</span>
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  <span class="go">sol.check_against_manifold sol.long_edge</span>
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- <span class="gp">...</span>
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+ <span class="go">...</span>
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  <span class="go">sol.itervalues sol.volume_numerical</span>
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  </pre></div>
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  </div>
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  <p>The overview diagram might also be helpful.</p>
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  </section>
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  <section id="converting-exact-solutions-into-numerical-solutions">
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- <h2>Converting exact solutions into numerical solutions<a class="headerlink" href="#converting-exact-solutions-into-numerical-solutions" title="Permalink to this headline">¶</a></h2>
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+ <h2>Converting exact solutions into numerical solutions<a class="headerlink" href="#converting-exact-solutions-into-numerical-solutions" title="Link to this heading"></a></h2>
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  <p>We can turn exact solutions into numerical solutions by calling <code class="docutils literal notranslate"><span class="pre">numerical</span></code>:</p>
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">sol</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span>
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">sol</span>
@@ -206,7 +265,7 @@ the given arguments (here <code class="docutils literal notranslate"><span class
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  <p><strong>Remark:</strong> <code class="docutils literal notranslate"><span class="pre">CrossRatios</span></code> also support <code class="docutils literal notranslate"><span class="pre">numerical</span></code>.</p>
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  </section>
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  <section id="working-with-exact-vs-numerical-solutions">
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- <span id="ptolemy-example-numerical-matrix"></span><h2>Working with exact vs numerical solutions<a class="headerlink" href="#working-with-exact-vs-numerical-solutions" title="Permalink to this headline">¶</a></h2>
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+ <span id="ptolemy-example-numerical-matrix"></span><h2>Working with exact vs numerical solutions<a class="headerlink" href="#working-with-exact-vs-numerical-solutions" title="Link to this heading"></a></h2>
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  <p>Most methods such as <code class="docutils literal notranslate"><span class="pre">evaluate_word</span></code> or <code class="docutils literal notranslate"><span class="pre">cross_ratios</span></code> work just the same way on an exact solution:</p>
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">exact_sol</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m004&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span>
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">exact_sol</span>
@@ -251,7 +310,7 @@ of Galois conjugate numerical solutions first. <code class="docutils literal not
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  </div>
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  </section>
253
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  <section id="computing-numerical-solutions-directly">
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- <span id="ptolemy-example-retrieve-numerical-solutions"></span><h2>Computing numerical solutions directly<a class="headerlink" href="#computing-numerical-solutions-directly" title="Permalink to this headline">¶</a></h2>
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+ <span id="ptolemy-example-retrieve-numerical-solutions"></span><h2>Computing numerical solutions directly<a class="headerlink" href="#computing-numerical-solutions-directly" title="Link to this heading"></a></h2>
255
314
  <p>We can also directly compute numerical solutions:</p>
256
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">M</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m004&quot;</span><span class="p">)</span>
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">sols</span> <span class="o">=</span> <span class="n">M</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">numerical</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span>
@@ -279,7 +338,7 @@ of Galois conjugate numerical solutions first. <code class="docutils literal not
279
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  (because it can avoid computing the number field from the lexicographic Groebner basis, see later). For example, many PSL(3, <strong>C</strong>) examples only work when using <code class="docutils literal notranslate"><span class="pre">numerical</span> <span class="pre">=</span> <span class="pre">True</span></code>.</p>
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  </section>
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  <section id="computing-cross-ratios-from-ptolemy-coordinates">
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- <span id="ptolemy-example-cross-ratios"></span><h2>Computing cross ratios from Ptolemy coordinates<a class="headerlink" href="#computing-cross-ratios-from-ptolemy-coordinates" title="Permalink to this headline">¶</a></h2>
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+ <span id="ptolemy-example-cross-ratios"></span><h2>Computing cross ratios from Ptolemy coordinates<a class="headerlink" href="#computing-cross-ratios-from-ptolemy-coordinates" title="Link to this heading"></a></h2>
283
342
  <p>Given exact or numerical solutions to the Ptolemy variety, we can also compute the cross ratios/shape parameters:</p>
284
343
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">sols</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m004&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span><span class="s1">&#39;all&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
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  <span class="gp">&gt;&gt;&gt; </span><span class="n">zs</span><span class="o">=</span><span class="n">sols</span><span class="o">.</span><span class="n">cross_ratios</span><span class="p">()</span>
@@ -321,7 +380,7 @@ of Galois conjugate numerical solutions first. <code class="docutils literal not
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  <p>The result is of type <code class="docutils literal notranslate"><span class="pre">CrossRatios</span></code> and assigns z as well as z’=1/(1-z) and z’’=1-1/z a value.</p>
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  </section>
323
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  <section id="the-dimension-of-a-component">
324
- <span id="ptolemy-non-zero-dim-comp"></span><h2>The dimension of a component<a class="headerlink" href="#the-dimension-of-a-component" title="Permalink to this headline">¶</a></h2>
383
+ <span id="ptolemy-non-zero-dim-comp"></span><h2>The dimension of a component<a class="headerlink" href="#the-dimension-of-a-component" title="Link to this heading"></a></h2>
325
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  <p>A Ptolemy variety might have positively dimensional components (note that this might or might not be a positively dimensional family of representations, see <a class="reference internal" href="ptolemy_prelim.html#ptolemy-generically-decorated"><span class="std std-ref">here</span></a>). For example, the Ptolemy variety for <code class="docutils literal notranslate"><span class="pre">m371</span></code> and the trivial obstruction class has a 1-dimensional component. This is indicated by:</p>
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  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">M</span><span class="o">.</span><span class="n">ptolemy_variety</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">retrieve_solutions</span><span class="p">()</span>
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  <span class="go">[NonZeroDimensionalComponent(dimension = 1)]</span>
@@ -379,81 +438,34 @@ of Galois conjugate numerical solutions first. <code class="docutils literal not
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  </section>
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- <li><a class="reference internal" href="#">Step-by-step examples: Part 2</a><ul>
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- <li><a class="reference internal" href="#the-ptolemy-list-type">The Ptolemy list type</a></li>
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- <li><a class="reference internal" href="#using-the-ptolemy-list-type-recursively">Using the Ptolemy list type recursively</a></li>
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- <li><a class="reference internal" href="#a-comparison-of-m003-and-m004">A comparison of <code class="docutils literal notranslate"><span class="pre">m003</span></code> and <code class="docutils literal notranslate"><span class="pre">m004</span></code></a></li>
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- <li><a class="reference internal" href="#a-non-hyperbolic-example">A non-hyperbolic example</a></li>
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- <li><a class="reference internal" href="#computing-numerical-solutions-directly">Computing numerical solutions directly</a></li>
400
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