medsci-skills 4.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +50 -0
- package/README.md +602 -0
- package/README_FIRST.md +27 -0
- package/bin/medsci-skills.js +159 -0
- package/installers/install-macos.command +19 -0
- package/installers/install-windows.cmd +26 -0
- package/installers/install-windows.ps1 +17 -0
- package/installers/install.py +218 -0
- package/metadata/skills_catalog.json +452 -0
- package/package.json +48 -0
- package/skills/academic-aio/SKILL.md +408 -0
- package/skills/academic-aio/references/case_studies/kjr_mllm_2025.md +82 -0
- package/skills/academic-aio/references/checklists/AIO_GENERAL.md +354 -0
- package/skills/academic-aio/references/journal_summarybox_templates.yaml +126 -0
- package/skills/academic-aio/references/oac_funding_checklist.yaml +129 -0
- package/skills/academic-aio/references/reporting_guideline_mapping.md +39 -0
- package/skills/academic-aio/references/schema_markup_templates/CodeRepository.jsonld +32 -0
- package/skills/academic-aio/references/schema_markup_templates/Dataset.jsonld +36 -0
- package/skills/academic-aio/references/schema_markup_templates/Person.jsonld +30 -0
- package/skills/academic-aio/references/schema_markup_templates/README.md +43 -0
- package/skills/academic-aio/references/schema_markup_templates/ScholarlyArticle.jsonld +55 -0
- package/skills/academic-aio/scripts/batch_metadata_audit.py +169 -0
- package/skills/academic-aio/scripts/validate_schema.py +118 -0
- package/skills/academic-aio/skill.yml +36 -0
- package/skills/academic-aio/templates/aio_audit_checklist.md.j2 +108 -0
- package/skills/add-journal/SKILL.md +482 -0
- package/skills/add-journal/skill.yml +33 -0
- package/skills/analyze-stats/SKILL.md +598 -0
- package/skills/analyze-stats/references/analysis_guides/missing_data.md +109 -0
- package/skills/analyze-stats/references/analysis_guides/nhis_icd10_mapping.md +247 -0
- package/skills/analyze-stats/references/analysis_guides/propensity_score.md +132 -0
- package/skills/analyze-stats/references/analysis_guides/regression.md +115 -0
- package/skills/analyze-stats/references/analysis_guides/repeated_measures.md +160 -0
- package/skills/analyze-stats/references/analysis_guides/survey_weighted.md +366 -0
- package/skills/analyze-stats/references/analysis_guides/test_selection.md +86 -0
- package/skills/analyze-stats/references/style/figure_style.mplstyle +69 -0
- package/skills/analyze-stats/references/style/theme_publication.R +147 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/ajr.yaml +51 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/european_radiology.yaml +55 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/jama.yaml +66 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/lancet.yaml +57 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/nejm.yaml +51 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/radiology.yaml +66 -0
- package/skills/analyze-stats/references/table-standards/table-standards.md +287 -0
- package/skills/analyze-stats/references/table-standards/table-types/diagnostic_accuracy.md +36 -0
- package/skills/analyze-stats/references/table-standards/table-types/meta_analysis.md +58 -0
- package/skills/analyze-stats/references/table-standards/table-types/model_comparison.md +36 -0
- package/skills/analyze-stats/references/table-standards/table-types/regression_results.md +50 -0
- package/skills/analyze-stats/references/table-standards/table-types/table1_demographics.md +51 -0
- package/skills/analyze-stats/references/table-standards/tool-comparison.md +79 -0
- package/skills/analyze-stats/references/templates/agreement_analysis.py +436 -0
- package/skills/analyze-stats/references/templates/dca_plot.R +237 -0
- package/skills/analyze-stats/references/templates/diagnostic_accuracy.py +401 -0
- package/skills/analyze-stats/references/templates/dta_meta_analysis.R +384 -0
- package/skills/analyze-stats/references/templates/forest_plot.py +412 -0
- package/skills/analyze-stats/references/templates/likert_summary.py +356 -0
- package/skills/analyze-stats/references/templates/meta_analysis.R +365 -0
- package/skills/analyze-stats/references/templates/propensity_score.py +478 -0
- package/skills/analyze-stats/references/templates/regression.py +425 -0
- package/skills/analyze-stats/references/templates/repeated_measures.py +434 -0
- package/skills/analyze-stats/references/templates/sample_size.R +382 -0
- package/skills/analyze-stats/references/templates/survey_weighted_analysis.py +411 -0
- package/skills/analyze-stats/references/templates/survival_analysis.py +325 -0
- package/skills/analyze-stats/references/templates/table1_demographics.py +287 -0
- package/skills/analyze-stats/scripts/check_generated_code.py +335 -0
- package/skills/analyze-stats/skill.yml +38 -0
- package/skills/analyze-stats/tests/fixtures/gen_bad.R +16 -0
- package/skills/analyze-stats/tests/fixtures/gen_bad.py +24 -0
- package/skills/analyze-stats/tests/fixtures/gen_clean.py +21 -0
- package/skills/analyze-stats/tests/test_generated_code.sh +59 -0
- package/skills/analyze-stats/tests/test_survival_template.sh +53 -0
- package/skills/author-strategy/SKILL.md +117 -0
- package/skills/author-strategy/analyze_patterns.py +303 -0
- package/skills/author-strategy/fetch_pubmed.py +374 -0
- package/skills/author-strategy/skill.yml +34 -0
- package/skills/batch-cohort/SKILL.md +223 -0
- package/skills/batch-cohort/references/base_template_knhanes.R +210 -0
- package/skills/batch-cohort/references/batch_template_generator.R +222 -0
- package/skills/batch-cohort/references/variable_coding_registry.md +136 -0
- package/skills/batch-cohort/skill.yml +35 -0
- package/skills/calc-sample-size/SKILL.md +491 -0
- package/skills/calc-sample-size/references/formulas.md +655 -0
- package/skills/calc-sample-size/references/observational_cohort.md +49 -0
- package/skills/calc-sample-size/skill.yml +51 -0
- package/skills/check-reporting/SKILL.md +534 -0
- package/skills/check-reporting/references/LICENSES.md +41 -0
- package/skills/check-reporting/references/checklists/AMSTAR2.md +54 -0
- package/skills/check-reporting/references/checklists/ARRIVE_2.md +234 -0
- package/skills/check-reporting/references/checklists/CARE.md +102 -0
- package/skills/check-reporting/references/checklists/CLAIM_2024.md +128 -0
- package/skills/check-reporting/references/checklists/CLEAR.md +113 -0
- package/skills/check-reporting/references/checklists/CONSORT.md +86 -0
- package/skills/check-reporting/references/checklists/COSMIN_RoB.md +136 -0
- package/skills/check-reporting/references/checklists/GRRAS.md +61 -0
- package/skills/check-reporting/references/checklists/MI_CLEAR_LLM.md +167 -0
- package/skills/check-reporting/references/checklists/MOOSE.md +85 -0
- package/skills/check-reporting/references/checklists/NOS.md +88 -0
- package/skills/check-reporting/references/checklists/PRISMA_2020.md +135 -0
- package/skills/check-reporting/references/checklists/PRISMA_DTA.md +36 -0
- package/skills/check-reporting/references/checklists/PRISMA_P.md +56 -0
- package/skills/check-reporting/references/checklists/PROBAST.md +75 -0
- package/skills/check-reporting/references/checklists/PROBAST_AI.md +130 -0
- package/skills/check-reporting/references/checklists/QUADAS2.md +77 -0
- package/skills/check-reporting/references/checklists/QUADAS_C.md +131 -0
- package/skills/check-reporting/references/checklists/ROBINS_E.md +179 -0
- package/skills/check-reporting/references/checklists/ROBINS_I.md +87 -0
- package/skills/check-reporting/references/checklists/ROBIS.md +114 -0
- package/skills/check-reporting/references/checklists/ROB_ME.md +126 -0
- package/skills/check-reporting/references/checklists/RoB2.md +79 -0
- package/skills/check-reporting/references/checklists/RoB_NMA.md +96 -0
- package/skills/check-reporting/references/checklists/SPIRIT.md +112 -0
- package/skills/check-reporting/references/checklists/SQUIRE_2.md +68 -0
- package/skills/check-reporting/references/checklists/STARD.md +129 -0
- package/skills/check-reporting/references/checklists/STARD_AI.md +211 -0
- package/skills/check-reporting/references/checklists/STROBE.md +80 -0
- package/skills/check-reporting/references/checklists/SWiM.md +33 -0
- package/skills/check-reporting/references/checklists/TRIPOD.md +157 -0
- package/skills/check-reporting/references/checklists/TRIPOD_AI.md +140 -0
- package/skills/check-reporting/references/step4c_registration_timing.md +93 -0
- package/skills/check-reporting/references/step4d_prisma_figure_audit.md +137 -0
- package/skills/check-reporting/scripts/check_checklist_exists.py +183 -0
- package/skills/check-reporting/scripts/check_checklist_version.py +168 -0
- package/skills/check-reporting/scripts/check_framework_naming.py +206 -0
- package/skills/check-reporting/scripts/check_prisma_figure.py +209 -0
- package/skills/check-reporting/scripts/prisma_cascade_check.py +274 -0
- package/skills/check-reporting/skill.yml +41 -0
- package/skills/check-reporting/tests/fixtures/framework_bad.md +8 -0
- package/skills/check-reporting/tests/fixtures/framework_clean.md +7 -0
- package/skills/check-reporting/tests/test_checklist_fail_fast.sh +77 -0
- package/skills/check-reporting/tests/test_checklist_version.sh +72 -0
- package/skills/check-reporting/tests/test_framework_naming.sh +45 -0
- package/skills/check-reporting/tests/test_prisma_cascade.sh +104 -0
- package/skills/clean-data/SKILL.md +180 -0
- package/skills/clean-data/references/cleaning_patterns.md +299 -0
- package/skills/clean-data/references/profiling_template.py +304 -0
- package/skills/clean-data/scripts/check_structural_zero.py +174 -0
- package/skills/clean-data/skill.yml +35 -0
- package/skills/clean-data/tests/fixtures/smoking.csv +8 -0
- package/skills/clean-data/tests/test_structural_zero.sh +49 -0
- package/skills/cross-national/SKILL.md +264 -0
- package/skills/cross-national/skill.yml +37 -0
- package/skills/define-variables/SKILL.md +146 -0
- package/skills/define-variables/references/common_definitions.md +190 -0
- package/skills/define-variables/skill.yml +34 -0
- package/skills/define-variables/templates/variable_operationalization.md +64 -0
- package/skills/deidentify/SKILL.md +203 -0
- package/skills/deidentify/deidentify.py +1224 -0
- package/skills/deidentify/locales/_template.json +45 -0
- package/skills/deidentify/locales/au.json +43 -0
- package/skills/deidentify/locales/ca.json +44 -0
- package/skills/deidentify/locales/cn.json +47 -0
- package/skills/deidentify/locales/de.json +48 -0
- package/skills/deidentify/locales/fr.json +48 -0
- package/skills/deidentify/locales/in.json +48 -0
- package/skills/deidentify/locales/jp.json +48 -0
- package/skills/deidentify/locales/kr.json +48 -0
- package/skills/deidentify/locales/uk.json +45 -0
- package/skills/deidentify/locales/us.json +43 -0
- package/skills/deidentify/references/date_shift_guide.md +82 -0
- package/skills/deidentify/references/hipaa_18_identifiers.md +48 -0
- package/skills/deidentify/references/korean_phi_patterns.md +135 -0
- package/skills/deidentify/skill.yml +43 -0
- package/skills/deidentify/tests/README.md +26 -0
- package/skills/deidentify/tests/test_clean.csv +16 -0
- package/skills/deidentify/tests/test_edge_cases.csv +11 -0
- package/skills/deidentify/tests/test_phi_korean.csv +11 -0
- package/skills/design-ai-benchmarking/SKILL.md +214 -0
- package/skills/design-ai-benchmarking/references/benchmark_export_schema.json +69 -0
- package/skills/design-ai-benchmarking/references/elicitation_rubric_template.md +37 -0
- package/skills/design-ai-benchmarking/skill.yml +38 -0
- package/skills/design-study/SKILL.md +298 -0
- package/skills/design-study/skill.yml +33 -0
- package/skills/fill-icmje-coi/SKILL.md +216 -0
- package/skills/fill-icmje-coi/scripts/fill_icmje_coi.py +140 -0
- package/skills/fill-icmje-coi/skill.yml +35 -0
- package/skills/fill-icmje-coi/templates/icmje_coi_seed_synthetic.docx +0 -0
- package/skills/fill-protocol/SKILL.md +248 -0
- package/skills/fill-protocol/examples/example_irb_template.yaml +53 -0
- package/skills/fill-protocol/references/best_practices.md +121 -0
- package/skills/fill-protocol/scripts/doc_to_docx.py +111 -0
- package/skills/fill-protocol/scripts/fill_form.py +611 -0
- package/skills/fill-protocol/scripts/inspect_template.py +61 -0
- package/skills/fill-protocol/setup.sh +162 -0
- package/skills/fill-protocol/skill.yml +37 -0
- package/skills/find-cohort-gap/SKILL.md +309 -0
- package/skills/find-cohort-gap/references/cohort_profile_template.md +93 -0
- package/skills/find-cohort-gap/references/onepager_template.md +84 -0
- package/skills/find-cohort-gap/references/pattern_scoring_rubric.md +169 -0
- package/skills/find-cohort-gap/references/saturation_query_templates.md +143 -0
- package/skills/find-cohort-gap/skill.yml +35 -0
- package/skills/find-journal/POLICY.md +87 -0
- package/skills/find-journal/SKILL.md +340 -0
- package/skills/find-journal/references/journal_profiles/AJNR.md +29 -0
- package/skills/find-journal/references/journal_profiles/AJR.md +30 -0
- package/skills/find-journal/references/journal_profiles/Abdominal_Radiology.md +30 -0
- package/skills/find-journal/references/journal_profiles/Academic_Radiology.md +30 -0
- package/skills/find-journal/references/journal_profiles/Annals_of_Internal_Medicine.md +33 -0
- package/skills/find-journal/references/journal_profiles/Artificial_Intelligence_in_Medicine.md +28 -0
- package/skills/find-journal/references/journal_profiles/BMC_Medicine.md +31 -0
- package/skills/find-journal/references/journal_profiles/British_Journal_of_Radiology.md +39 -0
- package/skills/find-journal/references/journal_profiles/CVIR.md +30 -0
- package/skills/find-journal/references/journal_profiles/Chest.md +39 -0
- package/skills/find-journal/references/journal_profiles/Clinical_Radiology.md +30 -0
- package/skills/find-journal/references/journal_profiles/Clinical_and_Molecular_Hepatology.md +32 -0
- package/skills/find-journal/references/journal_profiles/Diabetes_Metabolism_Journal.md +36 -0
- package/skills/find-journal/references/journal_profiles/Diagnostic_and_Interventional_Radiology.md +32 -0
- package/skills/find-journal/references/journal_profiles/Endocrinology_and_Metabolism.md +37 -0
- package/skills/find-journal/references/journal_profiles/European_Journal_of_Preventive_Cardiology.md +39 -0
- package/skills/find-journal/references/journal_profiles/European_Radiology.md +29 -0
- package/skills/find-journal/references/journal_profiles/Hepatology_Communications.md +40 -0
- package/skills/find-journal/references/journal_profiles/Hepatology_International.md +37 -0
- package/skills/find-journal/references/journal_profiles/IEEE_JBHI.md +28 -0
- package/skills/find-journal/references/journal_profiles/IEEE_TMI.md +28 -0
- package/skills/find-journal/references/journal_profiles/INSI.md +29 -0
- package/skills/find-journal/references/journal_profiles/Investigative_Radiology.md +25 -0
- package/skills/find-journal/references/journal_profiles/JACC_Advances.md +41 -0
- package/skills/find-journal/references/journal_profiles/JACC_Asia.md +30 -0
- package/skills/find-journal/references/journal_profiles/JACR.md +28 -0
- package/skills/find-journal/references/journal_profiles/JAMA.md +40 -0
- package/skills/find-journal/references/journal_profiles/JAMA_Network_Open.md +30 -0
- package/skills/find-journal/references/journal_profiles/JCSM.md +39 -0
- package/skills/find-journal/references/journal_profiles/JKMS.md +32 -0
- package/skills/find-journal/references/journal_profiles/JMIR.md +29 -0
- package/skills/find-journal/references/journal_profiles/JMIR_Medical_Education.md +29 -0
- package/skills/find-journal/references/journal_profiles/JNIS.md +35 -0
- package/skills/find-journal/references/journal_profiles/JVIR.md +31 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Biomedical_Informatics.md +29 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Clinical_Endocrinology_and_Metabolism.md +40 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Magnetic_Resonance_Imaging.md +30 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Nuclear_Medicine.md +31 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Stroke.md +32 -0
- package/skills/find-journal/references/journal_profiles/KJR.md +38 -0
- package/skills/find-journal/references/journal_profiles/Korean_Circulation_Journal.md +38 -0
- package/skills/find-journal/references/journal_profiles/Korean_Journal_of_Internal_Medicine.md +36 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Diabetes_and_Endocrinology.md +40 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Gastroenterology_and_Hepatology.md +49 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Infectious_Diseases.md +38 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Neurology.md +39 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Oncology.md +40 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Psychiatry.md +38 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Public_Health.md +30 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Respiratory_Medicine.md +39 -0
- package/skills/find-journal/references/journal_profiles/Liver_International.md +33 -0
- package/skills/find-journal/references/journal_profiles/Medical_Image_Analysis.md +28 -0
- package/skills/find-journal/references/journal_profiles/NEJM.md +33 -0
- package/skills/find-journal/references/journal_profiles/Nature_Machine_Intelligence.md +31 -0
- package/skills/find-journal/references/journal_profiles/Nature_Medicine.md +39 -0
- package/skills/find-journal/references/journal_profiles/Neuroradiology.md +31 -0
- package/skills/find-journal/references/journal_profiles/Nutrition_Metabolism_and_Cardiovascular_Diseases.md +39 -0
- package/skills/find-journal/references/journal_profiles/PLOS_Medicine.md +32 -0
- package/skills/find-journal/references/journal_profiles/RYAI.md +28 -0
- package/skills/find-journal/references/journal_profiles/Radiology.md +29 -0
- package/skills/find-journal/references/journal_profiles/Skeletal_Radiology.md +31 -0
- package/skills/find-journal/references/journal_profiles/Stroke.md +37 -0
- package/skills/find-journal/references/journal_profiles/The_BMJ.md +31 -0
- package/skills/find-journal/references/journal_profiles/The_Lancet.md +31 -0
- package/skills/find-journal/references/journal_profiles/The_Lancet_Digital_Health.md +29 -0
- package/skills/find-journal/references/journal_profiles/World_Journal_of_Hepatology.md +53 -0
- package/skills/find-journal/references/journal_profiles/npj_Digital_Medicine.md +29 -0
- package/skills/find-journal/skill.yml +34 -0
- package/skills/fulltext-retrieval/SKILL.md +174 -0
- package/skills/fulltext-retrieval/fetch_oa.py +433 -0
- package/skills/fulltext-retrieval/pdf_to_md.py +160 -0
- package/skills/fulltext-retrieval/skill.yml +41 -0
- package/skills/generate-codebook/SKILL.md +155 -0
- package/skills/generate-codebook/references/codebook_schema.md +76 -0
- package/skills/generate-codebook/scripts/generate_codebook.py +278 -0
- package/skills/generate-codebook/skill.yml +35 -0
- package/skills/generate-codebook/tests/test_generate_codebook.sh +76 -0
- package/skills/grant-builder/SKILL.md +251 -0
- package/skills/grant-builder/skill.yml +34 -0
- package/skills/humanize/SKILL.md +251 -0
- package/skills/humanize/references/ai_patterns.md +571 -0
- package/skills/humanize/skill.yml +33 -0
- package/skills/intake-project/SKILL.md +264 -0
- package/skills/intake-project/skill.yml +34 -0
- package/skills/lit-sync/SKILL.md +448 -0
- package/skills/lit-sync/references/locale/ko/note_templates.md +110 -0
- package/skills/lit-sync/skill.yml +52 -0
- package/skills/lit-sync/tests/test_poll_logic.sh +92 -0
- package/skills/ma-scout/SKILL.md +640 -0
- package/skills/ma-scout/references/project_readme_template.md +95 -0
- package/skills/ma-scout/references/project_readme_template_ko.md +82 -0
- package/skills/ma-scout/skill.yml +33 -0
- package/skills/make-figures/SKILL.md +957 -0
- package/skills/make-figures/references/critic_rubrics/data_plot.md +166 -0
- package/skills/make-figures/references/critic_rubrics/flow_diagram.md +169 -0
- package/skills/make-figures/references/design_principles.md +181 -0
- package/skills/make-figures/references/exemplar_diagrams/README.md +65 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/README.md +15 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/template_input.yaml +37 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/template_output.pdf +0 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/template_output.png +0 -0
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|
168
|
+
</names>
|
|
169
|
+
</macro>
|
|
170
|
+
<macro name="title">
|
|
171
|
+
<choose>
|
|
172
|
+
<if type="webpage" variable="container-title">
|
|
173
|
+
<!-- `webpage` listed under `container-title` (Citing Medicine, ch. 25) -->
|
|
174
|
+
<text variable="container-title"/>
|
|
175
|
+
</if>
|
|
176
|
+
<else>
|
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177
|
+
<text variable="title"/>
|
|
178
|
+
</else>
|
|
179
|
+
</choose>
|
|
180
|
+
</macro>
|
|
181
|
+
<macro name="content-type">
|
|
182
|
+
<text variable="genre"/>
|
|
183
|
+
</macro>
|
|
184
|
+
<macro name="type-of-medium">
|
|
185
|
+
<choose>
|
|
186
|
+
<if variable="medium">
|
|
187
|
+
<text text-case="capitalize-first" variable="medium"/>
|
|
188
|
+
</if>
|
|
189
|
+
<else-if match="any" type="chapter entry-dictionary entry-encyclopedia paper-conference"/>
|
|
190
|
+
<else-if variable="URL">
|
|
191
|
+
<text term="internet" text-case="capitalize-first"/>
|
|
192
|
+
</else-if>
|
|
193
|
+
</choose>
|
|
194
|
+
</macro>
|
|
195
|
+
<macro name="container-preposition">
|
|
196
|
+
<choose>
|
|
197
|
+
<if match="any" type="chapter paper-conference entry-dictionary entry-encyclopedia">
|
|
198
|
+
<text term="in" text-case="capitalize-first"/>
|
|
199
|
+
</if>
|
|
200
|
+
</choose>
|
|
201
|
+
</macro>
|
|
202
|
+
<macro name="secondary-authors">
|
|
203
|
+
<names variable="editor">
|
|
204
|
+
<label prefix=", "/>
|
|
205
|
+
</names>
|
|
206
|
+
</macro>
|
|
207
|
+
<macro name="container-title">
|
|
208
|
+
<group delimiter=", ">
|
|
209
|
+
<choose>
|
|
210
|
+
<if type="webpage"/>
|
|
211
|
+
<else-if variable="container-title">
|
|
212
|
+
<group delimiter=". ">
|
|
213
|
+
<group delimiter=" ">
|
|
214
|
+
<choose>
|
|
215
|
+
<if match="any" type="article-journal review review-book">
|
|
216
|
+
<text form="short" strip-periods="true" variable="container-title"/>
|
|
217
|
+
</if>
|
|
218
|
+
<else>
|
|
219
|
+
<text variable="container-title"/>
|
|
220
|
+
</else>
|
|
221
|
+
</choose>
|
|
222
|
+
<choose>
|
|
223
|
+
<if type="article-journal" variable="DOI"/>
|
|
224
|
+
<else-if type="article-journal" variable="PMID"/>
|
|
225
|
+
<else-if type="article-journal" variable="PMCID"/>
|
|
226
|
+
<else-if variable="URL">
|
|
227
|
+
<text prefix="[" suffix="]" term="internet" text-case="capitalize-first"/>
|
|
228
|
+
</else-if>
|
|
229
|
+
</choose>
|
|
230
|
+
</group>
|
|
231
|
+
<text macro="label-edition"/>
|
|
232
|
+
</group>
|
|
233
|
+
</else-if>
|
|
234
|
+
<!-- TODO: add `event-name` and `event-place` -->
|
|
235
|
+
<else-if match="any" type="bill legislation">
|
|
236
|
+
<group delimiter=". ">
|
|
237
|
+
<text variable="container-title"/>
|
|
238
|
+
<group delimiter=" ">
|
|
239
|
+
<text form="short" term="section" text-case="capitalize-first"/>
|
|
240
|
+
<text variable="section"/>
|
|
241
|
+
</group>
|
|
242
|
+
</group>
|
|
243
|
+
<text variable="number"/>
|
|
244
|
+
</else-if>
|
|
245
|
+
<else-if type="speech">
|
|
246
|
+
<group delimiter=": ">
|
|
247
|
+
<group delimiter=" ">
|
|
248
|
+
<text text-case="capitalize-first" variable="genre"/>
|
|
249
|
+
<text term="presented at"/>
|
|
250
|
+
</group>
|
|
251
|
+
<text variable="event"/>
|
|
252
|
+
</group>
|
|
253
|
+
</else-if>
|
|
254
|
+
<else>
|
|
255
|
+
<group delimiter=", ">
|
|
256
|
+
<text macro="label-volume-capitalized"/>
|
|
257
|
+
<text variable="volume-title"/>
|
|
258
|
+
</group>
|
|
259
|
+
<group delimiter=", ">
|
|
260
|
+
<text macro="label-part-number-capitalized"/>
|
|
261
|
+
<text variable="part-title"/>
|
|
262
|
+
</group>
|
|
263
|
+
</else>
|
|
264
|
+
</choose>
|
|
265
|
+
</group>
|
|
266
|
+
</macro>
|
|
267
|
+
<macro name="place-of-publication">
|
|
268
|
+
<choose>
|
|
269
|
+
<if type="thesis">
|
|
270
|
+
<text prefix="[" suffix="]" variable="publisher-place"/>
|
|
271
|
+
</if>
|
|
272
|
+
<else-if type="speech"/>
|
|
273
|
+
<else>
|
|
274
|
+
<text variable="publisher-place"/>
|
|
275
|
+
</else>
|
|
276
|
+
</choose>
|
|
277
|
+
</macro>
|
|
278
|
+
<macro name="publisher">
|
|
279
|
+
<choose>
|
|
280
|
+
<!-- discard publisher for serial publications -->
|
|
281
|
+
<if match="none" type="article-journal article-magazine article-newspaper periodical post-weblog review review-book">
|
|
282
|
+
<group delimiter=": ">
|
|
283
|
+
<text macro="place-of-publication"/>
|
|
284
|
+
<text variable="publisher"/>
|
|
285
|
+
</group>
|
|
286
|
+
</if>
|
|
287
|
+
</choose>
|
|
288
|
+
</macro>
|
|
289
|
+
<macro name="date">
|
|
290
|
+
<group delimiter=" ">
|
|
291
|
+
<choose>
|
|
292
|
+
<if match="any" type="article-journal article-magazine article-newspaper periodical post-weblog review review-book">
|
|
293
|
+
<group delimiter=":">
|
|
294
|
+
<group delimiter=" ">
|
|
295
|
+
<date form="text" variable="issued"/>
|
|
296
|
+
<choose>
|
|
297
|
+
<if type="article-journal" variable="DOI"/>
|
|
298
|
+
<else-if type="article-journal" variable="PMID"/>
|
|
299
|
+
<else-if type="article-journal" variable="PMCID"/>
|
|
300
|
+
<else>
|
|
301
|
+
<text macro="date-of-citation"/>
|
|
302
|
+
</else>
|
|
303
|
+
</choose>
|
|
304
|
+
</group>
|
|
305
|
+
<choose>
|
|
306
|
+
<if type="article-newspaper">
|
|
307
|
+
<text variable="page"/>
|
|
308
|
+
</if>
|
|
309
|
+
</choose>
|
|
310
|
+
</group>
|
|
311
|
+
</if>
|
|
312
|
+
<else-if match="any" type="bill legislation">
|
|
313
|
+
<date form="text" variable="issued"/>
|
|
314
|
+
</else-if>
|
|
315
|
+
<else-if type="report">
|
|
316
|
+
<date date-parts="year-month" form="text" variable="issued"/>
|
|
317
|
+
<text macro="date-of-citation"/>
|
|
318
|
+
</else-if>
|
|
319
|
+
<else-if type="patent">
|
|
320
|
+
<group delimiter=", ">
|
|
321
|
+
<text variable="number"/>
|
|
322
|
+
<date date-parts="year" form="numeric" variable="issued"/>
|
|
323
|
+
</group>
|
|
324
|
+
<text macro="date-of-citation"/>
|
|
325
|
+
</else-if>
|
|
326
|
+
<else-if type="speech">
|
|
327
|
+
<group delimiter="; ">
|
|
328
|
+
<group delimiter=" ">
|
|
329
|
+
<date form="text" variable="issued"/>
|
|
330
|
+
<text macro="date-of-citation"/>
|
|
331
|
+
</group>
|
|
332
|
+
<text variable="event-place"/>
|
|
333
|
+
</group>
|
|
334
|
+
</else-if>
|
|
335
|
+
<else>
|
|
336
|
+
<date date-parts="year" form="numeric" variable="issued"/>
|
|
337
|
+
<text macro="date-of-citation"/>
|
|
338
|
+
</else>
|
|
339
|
+
</choose>
|
|
340
|
+
</group>
|
|
341
|
+
</macro>
|
|
342
|
+
<macro name="identifier-serial">
|
|
343
|
+
<choose>
|
|
344
|
+
<if match="any" type="article-journal article-magazine periodical post-weblog review review-book">
|
|
345
|
+
<group delimiter=":">
|
|
346
|
+
<group>
|
|
347
|
+
<text variable="collection-title"/>
|
|
348
|
+
<text variable="volume"/>
|
|
349
|
+
<group delimiter=" " prefix="(" suffix=")">
|
|
350
|
+
<text variable="issue"/>
|
|
351
|
+
<text macro="label-supplement-number"/>
|
|
352
|
+
</group>
|
|
353
|
+
</group>
|
|
354
|
+
<text macro="location-pagination-serial"/>
|
|
355
|
+
</group>
|
|
356
|
+
</if>
|
|
357
|
+
</choose>
|
|
358
|
+
</macro>
|
|
359
|
+
<macro name="date-of-citation">
|
|
360
|
+
<choose>
|
|
361
|
+
<if variable="URL">
|
|
362
|
+
<group delimiter=" " prefix="[" suffix="]">
|
|
363
|
+
<text term="cited"/>
|
|
364
|
+
<date form="text" variable="accessed"/>
|
|
365
|
+
</group>
|
|
366
|
+
</if>
|
|
367
|
+
</choose>
|
|
368
|
+
</macro>
|
|
369
|
+
<macro name="location-pagination-monographic">
|
|
370
|
+
<group delimiter=" ">
|
|
371
|
+
<choose>
|
|
372
|
+
<if match="any" type="article-journal article-magazine article-newspaper review review-book"/>
|
|
373
|
+
<else-if type="book">
|
|
374
|
+
<text macro="label-number-of-pages"/>
|
|
375
|
+
</else-if>
|
|
376
|
+
<else>
|
|
377
|
+
<text macro="label-page"/>
|
|
378
|
+
</else>
|
|
379
|
+
</choose>
|
|
380
|
+
</group>
|
|
381
|
+
</macro>
|
|
382
|
+
<macro name="location-pagination-serial">
|
|
383
|
+
<choose>
|
|
384
|
+
<if variable="number">
|
|
385
|
+
<text variable="number"/>
|
|
386
|
+
</if>
|
|
387
|
+
<else>
|
|
388
|
+
<text variable="page"/>
|
|
389
|
+
</else>
|
|
390
|
+
</choose>
|
|
391
|
+
</macro>
|
|
392
|
+
<macro name="webpage-part">
|
|
393
|
+
<choose>
|
|
394
|
+
<if type="webpage" variable="container-title">
|
|
395
|
+
<text variable="title"/>
|
|
396
|
+
</if>
|
|
397
|
+
</choose>
|
|
398
|
+
</macro>
|
|
399
|
+
<macro name="series">
|
|
400
|
+
<choose>
|
|
401
|
+
<if match="any" type="article-journal article-magazine article-newspaper periodical post-weblog review review-book"/>
|
|
402
|
+
<else-if variable="collection-title">
|
|
403
|
+
<group delimiter=". " prefix="(" suffix=")">
|
|
404
|
+
<names variable="collection-editor">
|
|
405
|
+
<label prefix=", "/>
|
|
406
|
+
</names>
|
|
407
|
+
<group delimiter="; ">
|
|
408
|
+
<text variable="collection-title"/>
|
|
409
|
+
<text macro="label-collection-number"/>
|
|
410
|
+
</group>
|
|
411
|
+
</group>
|
|
412
|
+
</else-if>
|
|
413
|
+
</choose>
|
|
414
|
+
</macro>
|
|
415
|
+
<macro name="report-number">
|
|
416
|
+
<choose>
|
|
417
|
+
<if type="report" variable="number">
|
|
418
|
+
<group delimiter=" ">
|
|
419
|
+
<choose>
|
|
420
|
+
<if variable="genre">
|
|
421
|
+
<text text-case="capitalize-first" variable="genre"/>
|
|
422
|
+
</if>
|
|
423
|
+
<else>
|
|
424
|
+
<text term="report" text-case="capitalize-first"/>
|
|
425
|
+
</else>
|
|
426
|
+
</choose>
|
|
427
|
+
<text macro="label-number"/>
|
|
428
|
+
</group>
|
|
429
|
+
</if>
|
|
430
|
+
</choose>
|
|
431
|
+
</macro>
|
|
432
|
+
<macro name="availability">
|
|
433
|
+
<group delimiter=". ">
|
|
434
|
+
<group delimiter=": ">
|
|
435
|
+
<text text-case="capitalize-first" value="located at"/>
|
|
436
|
+
<group delimiter="; ">
|
|
437
|
+
<group delimiter=", ">
|
|
438
|
+
<text variable="archive_collection"/>
|
|
439
|
+
<text variable="archive"/>
|
|
440
|
+
<text variable="archive-place"/>
|
|
441
|
+
</group>
|
|
442
|
+
<text variable="archive_location"/>
|
|
443
|
+
</group>
|
|
444
|
+
</group>
|
|
445
|
+
<group delimiter=" ">
|
|
446
|
+
<choose>
|
|
447
|
+
<if type="article-journal" variable="DOI"/>
|
|
448
|
+
<else-if type="article-journal" variable="PMID"/>
|
|
449
|
+
<else-if type="article-journal" variable="PMCID"/>
|
|
450
|
+
<else>
|
|
451
|
+
<group delimiter=": ">
|
|
452
|
+
<text term="available at" text-case="capitalize-first"/>
|
|
453
|
+
<text variable="URL"/>
|
|
454
|
+
</group>
|
|
455
|
+
</else>
|
|
456
|
+
</choose>
|
|
457
|
+
</group>
|
|
458
|
+
</group>
|
|
459
|
+
</macro>
|
|
460
|
+
<macro name="notes">
|
|
461
|
+
<group delimiter=". " suffix=".">
|
|
462
|
+
<group delimiter="; ">
|
|
463
|
+
<group delimiter=": ">
|
|
464
|
+
<text value="PubMed PMID"/>
|
|
465
|
+
<text variable="PMID"/>
|
|
466
|
+
</group>
|
|
467
|
+
<group delimiter=": ">
|
|
468
|
+
<text value="PubMed Central PMCID"/>
|
|
469
|
+
<text variable="PMCID"/>
|
|
470
|
+
</group>
|
|
471
|
+
</group>
|
|
472
|
+
<text variable="references"/>
|
|
473
|
+
</group>
|
|
474
|
+
</macro>
|
|
475
|
+
<citation collapse="citation-number">
|
|
476
|
+
<sort>
|
|
477
|
+
<key variable="citation-number"/>
|
|
478
|
+
</sort>
|
|
479
|
+
<layout delimiter="," vertical-align="sup">
|
|
480
|
+
<text variable="citation-number"/>
|
|
481
|
+
</layout>
|
|
482
|
+
</citation>
|
|
483
|
+
<macro name="bibliography">
|
|
484
|
+
<group delimiter=" ">
|
|
485
|
+
<group delimiter=". " suffix=".">
|
|
486
|
+
<text macro="author"/>
|
|
487
|
+
<group delimiter=" ">
|
|
488
|
+
<text macro="title"/>
|
|
489
|
+
<text macro="content-type" prefix="[" suffix="]"/>
|
|
490
|
+
<choose>
|
|
491
|
+
<if type="webpage" variable="container-title">
|
|
492
|
+
<text macro="type-of-medium" prefix="[" suffix="]"/>
|
|
493
|
+
</if>
|
|
494
|
+
<else-if match="none" variable="container-title">
|
|
495
|
+
<text macro="type-of-medium" prefix="[" suffix="]"/>
|
|
496
|
+
</else-if>
|
|
497
|
+
</choose>
|
|
498
|
+
</group>
|
|
499
|
+
<choose>
|
|
500
|
+
<if match="none" variable="container-title">
|
|
501
|
+
<text macro="label-edition"/>
|
|
502
|
+
</if>
|
|
503
|
+
</choose>
|
|
504
|
+
<group delimiter=": ">
|
|
505
|
+
<text macro="container-preposition"/>
|
|
506
|
+
<group delimiter=". ">
|
|
507
|
+
<text macro="secondary-authors"/>
|
|
508
|
+
<text macro="container-title"/>
|
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<bibliography et-al-min="7" et-al-use-first="6" second-field-align="flush">
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<updated>2026-01-25T22:16:24+00:00</updated>
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<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
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</info>
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