medsci-skills 4.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (702) hide show
  1. package/LICENSE +50 -0
  2. package/README.md +602 -0
  3. package/README_FIRST.md +27 -0
  4. package/bin/medsci-skills.js +159 -0
  5. package/installers/install-macos.command +19 -0
  6. package/installers/install-windows.cmd +26 -0
  7. package/installers/install-windows.ps1 +17 -0
  8. package/installers/install.py +218 -0
  9. package/metadata/skills_catalog.json +452 -0
  10. package/package.json +48 -0
  11. package/skills/academic-aio/SKILL.md +408 -0
  12. package/skills/academic-aio/references/case_studies/kjr_mllm_2025.md +82 -0
  13. package/skills/academic-aio/references/checklists/AIO_GENERAL.md +354 -0
  14. package/skills/academic-aio/references/journal_summarybox_templates.yaml +126 -0
  15. package/skills/academic-aio/references/oac_funding_checklist.yaml +129 -0
  16. package/skills/academic-aio/references/reporting_guideline_mapping.md +39 -0
  17. package/skills/academic-aio/references/schema_markup_templates/CodeRepository.jsonld +32 -0
  18. package/skills/academic-aio/references/schema_markup_templates/Dataset.jsonld +36 -0
  19. package/skills/academic-aio/references/schema_markup_templates/Person.jsonld +30 -0
  20. package/skills/academic-aio/references/schema_markup_templates/README.md +43 -0
  21. package/skills/academic-aio/references/schema_markup_templates/ScholarlyArticle.jsonld +55 -0
  22. package/skills/academic-aio/scripts/batch_metadata_audit.py +169 -0
  23. package/skills/academic-aio/scripts/validate_schema.py +118 -0
  24. package/skills/academic-aio/skill.yml +36 -0
  25. package/skills/academic-aio/templates/aio_audit_checklist.md.j2 +108 -0
  26. package/skills/add-journal/SKILL.md +482 -0
  27. package/skills/add-journal/skill.yml +33 -0
  28. package/skills/analyze-stats/SKILL.md +598 -0
  29. package/skills/analyze-stats/references/analysis_guides/missing_data.md +109 -0
  30. package/skills/analyze-stats/references/analysis_guides/nhis_icd10_mapping.md +247 -0
  31. package/skills/analyze-stats/references/analysis_guides/propensity_score.md +132 -0
  32. package/skills/analyze-stats/references/analysis_guides/regression.md +115 -0
  33. package/skills/analyze-stats/references/analysis_guides/repeated_measures.md +160 -0
  34. package/skills/analyze-stats/references/analysis_guides/survey_weighted.md +366 -0
  35. package/skills/analyze-stats/references/analysis_guides/test_selection.md +86 -0
  36. package/skills/analyze-stats/references/style/figure_style.mplstyle +69 -0
  37. package/skills/analyze-stats/references/style/theme_publication.R +147 -0
  38. package/skills/analyze-stats/references/table-standards/journal-profiles/ajr.yaml +51 -0
  39. package/skills/analyze-stats/references/table-standards/journal-profiles/european_radiology.yaml +55 -0
  40. package/skills/analyze-stats/references/table-standards/journal-profiles/jama.yaml +66 -0
  41. package/skills/analyze-stats/references/table-standards/journal-profiles/lancet.yaml +57 -0
  42. package/skills/analyze-stats/references/table-standards/journal-profiles/nejm.yaml +51 -0
  43. package/skills/analyze-stats/references/table-standards/journal-profiles/radiology.yaml +66 -0
  44. package/skills/analyze-stats/references/table-standards/table-standards.md +287 -0
  45. package/skills/analyze-stats/references/table-standards/table-types/diagnostic_accuracy.md +36 -0
  46. package/skills/analyze-stats/references/table-standards/table-types/meta_analysis.md +58 -0
  47. package/skills/analyze-stats/references/table-standards/table-types/model_comparison.md +36 -0
  48. package/skills/analyze-stats/references/table-standards/table-types/regression_results.md +50 -0
  49. package/skills/analyze-stats/references/table-standards/table-types/table1_demographics.md +51 -0
  50. package/skills/analyze-stats/references/table-standards/tool-comparison.md +79 -0
  51. package/skills/analyze-stats/references/templates/agreement_analysis.py +436 -0
  52. package/skills/analyze-stats/references/templates/dca_plot.R +237 -0
  53. package/skills/analyze-stats/references/templates/diagnostic_accuracy.py +401 -0
  54. package/skills/analyze-stats/references/templates/dta_meta_analysis.R +384 -0
  55. package/skills/analyze-stats/references/templates/forest_plot.py +412 -0
  56. package/skills/analyze-stats/references/templates/likert_summary.py +356 -0
  57. package/skills/analyze-stats/references/templates/meta_analysis.R +365 -0
  58. package/skills/analyze-stats/references/templates/propensity_score.py +478 -0
  59. package/skills/analyze-stats/references/templates/regression.py +425 -0
  60. package/skills/analyze-stats/references/templates/repeated_measures.py +434 -0
  61. package/skills/analyze-stats/references/templates/sample_size.R +382 -0
  62. package/skills/analyze-stats/references/templates/survey_weighted_analysis.py +411 -0
  63. package/skills/analyze-stats/references/templates/survival_analysis.py +325 -0
  64. package/skills/analyze-stats/references/templates/table1_demographics.py +287 -0
  65. package/skills/analyze-stats/scripts/check_generated_code.py +335 -0
  66. package/skills/analyze-stats/skill.yml +38 -0
  67. package/skills/analyze-stats/tests/fixtures/gen_bad.R +16 -0
  68. package/skills/analyze-stats/tests/fixtures/gen_bad.py +24 -0
  69. package/skills/analyze-stats/tests/fixtures/gen_clean.py +21 -0
  70. package/skills/analyze-stats/tests/test_generated_code.sh +59 -0
  71. package/skills/analyze-stats/tests/test_survival_template.sh +53 -0
  72. package/skills/author-strategy/SKILL.md +117 -0
  73. package/skills/author-strategy/analyze_patterns.py +303 -0
  74. package/skills/author-strategy/fetch_pubmed.py +374 -0
  75. package/skills/author-strategy/skill.yml +34 -0
  76. package/skills/batch-cohort/SKILL.md +223 -0
  77. package/skills/batch-cohort/references/base_template_knhanes.R +210 -0
  78. package/skills/batch-cohort/references/batch_template_generator.R +222 -0
  79. package/skills/batch-cohort/references/variable_coding_registry.md +136 -0
  80. package/skills/batch-cohort/skill.yml +35 -0
  81. package/skills/calc-sample-size/SKILL.md +491 -0
  82. package/skills/calc-sample-size/references/formulas.md +655 -0
  83. package/skills/calc-sample-size/references/observational_cohort.md +49 -0
  84. package/skills/calc-sample-size/skill.yml +51 -0
  85. package/skills/check-reporting/SKILL.md +534 -0
  86. package/skills/check-reporting/references/LICENSES.md +41 -0
  87. package/skills/check-reporting/references/checklists/AMSTAR2.md +54 -0
  88. package/skills/check-reporting/references/checklists/ARRIVE_2.md +234 -0
  89. package/skills/check-reporting/references/checklists/CARE.md +102 -0
  90. package/skills/check-reporting/references/checklists/CLAIM_2024.md +128 -0
  91. package/skills/check-reporting/references/checklists/CLEAR.md +113 -0
  92. package/skills/check-reporting/references/checklists/CONSORT.md +86 -0
  93. package/skills/check-reporting/references/checklists/COSMIN_RoB.md +136 -0
  94. package/skills/check-reporting/references/checklists/GRRAS.md +61 -0
  95. package/skills/check-reporting/references/checklists/MI_CLEAR_LLM.md +167 -0
  96. package/skills/check-reporting/references/checklists/MOOSE.md +85 -0
  97. package/skills/check-reporting/references/checklists/NOS.md +88 -0
  98. package/skills/check-reporting/references/checklists/PRISMA_2020.md +135 -0
  99. package/skills/check-reporting/references/checklists/PRISMA_DTA.md +36 -0
  100. package/skills/check-reporting/references/checklists/PRISMA_P.md +56 -0
  101. package/skills/check-reporting/references/checklists/PROBAST.md +75 -0
  102. package/skills/check-reporting/references/checklists/PROBAST_AI.md +130 -0
  103. package/skills/check-reporting/references/checklists/QUADAS2.md +77 -0
  104. package/skills/check-reporting/references/checklists/QUADAS_C.md +131 -0
  105. package/skills/check-reporting/references/checklists/ROBINS_E.md +179 -0
  106. package/skills/check-reporting/references/checklists/ROBINS_I.md +87 -0
  107. package/skills/check-reporting/references/checklists/ROBIS.md +114 -0
  108. package/skills/check-reporting/references/checklists/ROB_ME.md +126 -0
  109. package/skills/check-reporting/references/checklists/RoB2.md +79 -0
  110. package/skills/check-reporting/references/checklists/RoB_NMA.md +96 -0
  111. package/skills/check-reporting/references/checklists/SPIRIT.md +112 -0
  112. package/skills/check-reporting/references/checklists/SQUIRE_2.md +68 -0
  113. package/skills/check-reporting/references/checklists/STARD.md +129 -0
  114. package/skills/check-reporting/references/checklists/STARD_AI.md +211 -0
  115. package/skills/check-reporting/references/checklists/STROBE.md +80 -0
  116. package/skills/check-reporting/references/checklists/SWiM.md +33 -0
  117. package/skills/check-reporting/references/checklists/TRIPOD.md +157 -0
  118. package/skills/check-reporting/references/checklists/TRIPOD_AI.md +140 -0
  119. package/skills/check-reporting/references/step4c_registration_timing.md +93 -0
  120. package/skills/check-reporting/references/step4d_prisma_figure_audit.md +137 -0
  121. package/skills/check-reporting/scripts/check_checklist_exists.py +183 -0
  122. package/skills/check-reporting/scripts/check_checklist_version.py +168 -0
  123. package/skills/check-reporting/scripts/check_framework_naming.py +206 -0
  124. package/skills/check-reporting/scripts/check_prisma_figure.py +209 -0
  125. package/skills/check-reporting/scripts/prisma_cascade_check.py +274 -0
  126. package/skills/check-reporting/skill.yml +41 -0
  127. package/skills/check-reporting/tests/fixtures/framework_bad.md +8 -0
  128. package/skills/check-reporting/tests/fixtures/framework_clean.md +7 -0
  129. package/skills/check-reporting/tests/test_checklist_fail_fast.sh +77 -0
  130. package/skills/check-reporting/tests/test_checklist_version.sh +72 -0
  131. package/skills/check-reporting/tests/test_framework_naming.sh +45 -0
  132. package/skills/check-reporting/tests/test_prisma_cascade.sh +104 -0
  133. package/skills/clean-data/SKILL.md +180 -0
  134. package/skills/clean-data/references/cleaning_patterns.md +299 -0
  135. package/skills/clean-data/references/profiling_template.py +304 -0
  136. package/skills/clean-data/scripts/check_structural_zero.py +174 -0
  137. package/skills/clean-data/skill.yml +35 -0
  138. package/skills/clean-data/tests/fixtures/smoking.csv +8 -0
  139. package/skills/clean-data/tests/test_structural_zero.sh +49 -0
  140. package/skills/cross-national/SKILL.md +264 -0
  141. package/skills/cross-national/skill.yml +37 -0
  142. package/skills/define-variables/SKILL.md +146 -0
  143. package/skills/define-variables/references/common_definitions.md +190 -0
  144. package/skills/define-variables/skill.yml +34 -0
  145. package/skills/define-variables/templates/variable_operationalization.md +64 -0
  146. package/skills/deidentify/SKILL.md +203 -0
  147. package/skills/deidentify/deidentify.py +1224 -0
  148. package/skills/deidentify/locales/_template.json +45 -0
  149. package/skills/deidentify/locales/au.json +43 -0
  150. package/skills/deidentify/locales/ca.json +44 -0
  151. package/skills/deidentify/locales/cn.json +47 -0
  152. package/skills/deidentify/locales/de.json +48 -0
  153. package/skills/deidentify/locales/fr.json +48 -0
  154. package/skills/deidentify/locales/in.json +48 -0
  155. package/skills/deidentify/locales/jp.json +48 -0
  156. package/skills/deidentify/locales/kr.json +48 -0
  157. package/skills/deidentify/locales/uk.json +45 -0
  158. package/skills/deidentify/locales/us.json +43 -0
  159. package/skills/deidentify/references/date_shift_guide.md +82 -0
  160. package/skills/deidentify/references/hipaa_18_identifiers.md +48 -0
  161. package/skills/deidentify/references/korean_phi_patterns.md +135 -0
  162. package/skills/deidentify/skill.yml +43 -0
  163. package/skills/deidentify/tests/README.md +26 -0
  164. package/skills/deidentify/tests/test_clean.csv +16 -0
  165. package/skills/deidentify/tests/test_edge_cases.csv +11 -0
  166. package/skills/deidentify/tests/test_phi_korean.csv +11 -0
  167. package/skills/design-ai-benchmarking/SKILL.md +214 -0
  168. package/skills/design-ai-benchmarking/references/benchmark_export_schema.json +69 -0
  169. package/skills/design-ai-benchmarking/references/elicitation_rubric_template.md +37 -0
  170. package/skills/design-ai-benchmarking/skill.yml +38 -0
  171. package/skills/design-study/SKILL.md +298 -0
  172. package/skills/design-study/skill.yml +33 -0
  173. package/skills/fill-icmje-coi/SKILL.md +216 -0
  174. package/skills/fill-icmje-coi/scripts/fill_icmje_coi.py +140 -0
  175. package/skills/fill-icmje-coi/skill.yml +35 -0
  176. package/skills/fill-icmje-coi/templates/icmje_coi_seed_synthetic.docx +0 -0
  177. package/skills/fill-protocol/SKILL.md +248 -0
  178. package/skills/fill-protocol/examples/example_irb_template.yaml +53 -0
  179. package/skills/fill-protocol/references/best_practices.md +121 -0
  180. package/skills/fill-protocol/scripts/doc_to_docx.py +111 -0
  181. package/skills/fill-protocol/scripts/fill_form.py +611 -0
  182. package/skills/fill-protocol/scripts/inspect_template.py +61 -0
  183. package/skills/fill-protocol/setup.sh +162 -0
  184. package/skills/fill-protocol/skill.yml +37 -0
  185. package/skills/find-cohort-gap/SKILL.md +309 -0
  186. package/skills/find-cohort-gap/references/cohort_profile_template.md +93 -0
  187. package/skills/find-cohort-gap/references/onepager_template.md +84 -0
  188. package/skills/find-cohort-gap/references/pattern_scoring_rubric.md +169 -0
  189. package/skills/find-cohort-gap/references/saturation_query_templates.md +143 -0
  190. package/skills/find-cohort-gap/skill.yml +35 -0
  191. package/skills/find-journal/POLICY.md +87 -0
  192. package/skills/find-journal/SKILL.md +340 -0
  193. package/skills/find-journal/references/journal_profiles/AJNR.md +29 -0
  194. package/skills/find-journal/references/journal_profiles/AJR.md +30 -0
  195. package/skills/find-journal/references/journal_profiles/Abdominal_Radiology.md +30 -0
  196. package/skills/find-journal/references/journal_profiles/Academic_Radiology.md +30 -0
  197. package/skills/find-journal/references/journal_profiles/Annals_of_Internal_Medicine.md +33 -0
  198. package/skills/find-journal/references/journal_profiles/Artificial_Intelligence_in_Medicine.md +28 -0
  199. package/skills/find-journal/references/journal_profiles/BMC_Medicine.md +31 -0
  200. package/skills/find-journal/references/journal_profiles/British_Journal_of_Radiology.md +39 -0
  201. package/skills/find-journal/references/journal_profiles/CVIR.md +30 -0
  202. package/skills/find-journal/references/journal_profiles/Chest.md +39 -0
  203. package/skills/find-journal/references/journal_profiles/Clinical_Radiology.md +30 -0
  204. package/skills/find-journal/references/journal_profiles/Clinical_and_Molecular_Hepatology.md +32 -0
  205. package/skills/find-journal/references/journal_profiles/Diabetes_Metabolism_Journal.md +36 -0
  206. package/skills/find-journal/references/journal_profiles/Diagnostic_and_Interventional_Radiology.md +32 -0
  207. package/skills/find-journal/references/journal_profiles/Endocrinology_and_Metabolism.md +37 -0
  208. package/skills/find-journal/references/journal_profiles/European_Journal_of_Preventive_Cardiology.md +39 -0
  209. package/skills/find-journal/references/journal_profiles/European_Radiology.md +29 -0
  210. package/skills/find-journal/references/journal_profiles/Hepatology_Communications.md +40 -0
  211. package/skills/find-journal/references/journal_profiles/Hepatology_International.md +37 -0
  212. package/skills/find-journal/references/journal_profiles/IEEE_JBHI.md +28 -0
  213. package/skills/find-journal/references/journal_profiles/IEEE_TMI.md +28 -0
  214. package/skills/find-journal/references/journal_profiles/INSI.md +29 -0
  215. package/skills/find-journal/references/journal_profiles/Investigative_Radiology.md +25 -0
  216. package/skills/find-journal/references/journal_profiles/JACC_Advances.md +41 -0
  217. package/skills/find-journal/references/journal_profiles/JACC_Asia.md +30 -0
  218. package/skills/find-journal/references/journal_profiles/JACR.md +28 -0
  219. package/skills/find-journal/references/journal_profiles/JAMA.md +40 -0
  220. package/skills/find-journal/references/journal_profiles/JAMA_Network_Open.md +30 -0
  221. package/skills/find-journal/references/journal_profiles/JCSM.md +39 -0
  222. package/skills/find-journal/references/journal_profiles/JKMS.md +32 -0
  223. package/skills/find-journal/references/journal_profiles/JMIR.md +29 -0
  224. package/skills/find-journal/references/journal_profiles/JMIR_Medical_Education.md +29 -0
  225. package/skills/find-journal/references/journal_profiles/JNIS.md +35 -0
  226. package/skills/find-journal/references/journal_profiles/JVIR.md +31 -0
  227. package/skills/find-journal/references/journal_profiles/Journal_of_Biomedical_Informatics.md +29 -0
  228. package/skills/find-journal/references/journal_profiles/Journal_of_Clinical_Endocrinology_and_Metabolism.md +40 -0
  229. package/skills/find-journal/references/journal_profiles/Journal_of_Magnetic_Resonance_Imaging.md +30 -0
  230. package/skills/find-journal/references/journal_profiles/Journal_of_Nuclear_Medicine.md +31 -0
  231. package/skills/find-journal/references/journal_profiles/Journal_of_Stroke.md +32 -0
  232. package/skills/find-journal/references/journal_profiles/KJR.md +38 -0
  233. package/skills/find-journal/references/journal_profiles/Korean_Circulation_Journal.md +38 -0
  234. package/skills/find-journal/references/journal_profiles/Korean_Journal_of_Internal_Medicine.md +36 -0
  235. package/skills/find-journal/references/journal_profiles/Lancet_Diabetes_and_Endocrinology.md +40 -0
  236. package/skills/find-journal/references/journal_profiles/Lancet_Gastroenterology_and_Hepatology.md +49 -0
  237. package/skills/find-journal/references/journal_profiles/Lancet_Infectious_Diseases.md +38 -0
  238. package/skills/find-journal/references/journal_profiles/Lancet_Neurology.md +39 -0
  239. package/skills/find-journal/references/journal_profiles/Lancet_Oncology.md +40 -0
  240. package/skills/find-journal/references/journal_profiles/Lancet_Psychiatry.md +38 -0
  241. package/skills/find-journal/references/journal_profiles/Lancet_Public_Health.md +30 -0
  242. package/skills/find-journal/references/journal_profiles/Lancet_Respiratory_Medicine.md +39 -0
  243. package/skills/find-journal/references/journal_profiles/Liver_International.md +33 -0
  244. package/skills/find-journal/references/journal_profiles/Medical_Image_Analysis.md +28 -0
  245. package/skills/find-journal/references/journal_profiles/NEJM.md +33 -0
  246. package/skills/find-journal/references/journal_profiles/Nature_Machine_Intelligence.md +31 -0
  247. package/skills/find-journal/references/journal_profiles/Nature_Medicine.md +39 -0
  248. package/skills/find-journal/references/journal_profiles/Neuroradiology.md +31 -0
  249. package/skills/find-journal/references/journal_profiles/Nutrition_Metabolism_and_Cardiovascular_Diseases.md +39 -0
  250. package/skills/find-journal/references/journal_profiles/PLOS_Medicine.md +32 -0
  251. package/skills/find-journal/references/journal_profiles/RYAI.md +28 -0
  252. package/skills/find-journal/references/journal_profiles/Radiology.md +29 -0
  253. package/skills/find-journal/references/journal_profiles/Skeletal_Radiology.md +31 -0
  254. package/skills/find-journal/references/journal_profiles/Stroke.md +37 -0
  255. package/skills/find-journal/references/journal_profiles/The_BMJ.md +31 -0
  256. package/skills/find-journal/references/journal_profiles/The_Lancet.md +31 -0
  257. package/skills/find-journal/references/journal_profiles/The_Lancet_Digital_Health.md +29 -0
  258. package/skills/find-journal/references/journal_profiles/World_Journal_of_Hepatology.md +53 -0
  259. package/skills/find-journal/references/journal_profiles/npj_Digital_Medicine.md +29 -0
  260. package/skills/find-journal/skill.yml +34 -0
  261. package/skills/fulltext-retrieval/SKILL.md +174 -0
  262. package/skills/fulltext-retrieval/fetch_oa.py +433 -0
  263. package/skills/fulltext-retrieval/pdf_to_md.py +160 -0
  264. package/skills/fulltext-retrieval/skill.yml +41 -0
  265. package/skills/generate-codebook/SKILL.md +155 -0
  266. package/skills/generate-codebook/references/codebook_schema.md +76 -0
  267. package/skills/generate-codebook/scripts/generate_codebook.py +278 -0
  268. package/skills/generate-codebook/skill.yml +35 -0
  269. package/skills/generate-codebook/tests/test_generate_codebook.sh +76 -0
  270. package/skills/grant-builder/SKILL.md +251 -0
  271. package/skills/grant-builder/skill.yml +34 -0
  272. package/skills/humanize/SKILL.md +251 -0
  273. package/skills/humanize/references/ai_patterns.md +571 -0
  274. package/skills/humanize/skill.yml +33 -0
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+ <text term="in" text-case="capitalize-first"/>
199
+ </if>
200
+ </choose>
201
+ </macro>
202
+ <macro name="secondary-authors">
203
+ <names variable="editor">
204
+ <label prefix=", "/>
205
+ </names>
206
+ </macro>
207
+ <macro name="container-title">
208
+ <group delimiter=", ">
209
+ <choose>
210
+ <if type="webpage"/>
211
+ <else-if variable="container-title">
212
+ <group delimiter=". ">
213
+ <group delimiter=" ">
214
+ <choose>
215
+ <if match="any" type="article-journal review review-book">
216
+ <text form="short" strip-periods="true" variable="container-title"/>
217
+ </if>
218
+ <else>
219
+ <text variable="container-title"/>
220
+ </else>
221
+ </choose>
222
+ <choose>
223
+ <if type="article-journal" variable="DOI"/>
224
+ <else-if type="article-journal" variable="PMID"/>
225
+ <else-if type="article-journal" variable="PMCID"/>
226
+ <else-if variable="URL">
227
+ <text prefix="[" suffix="]" term="internet" text-case="capitalize-first"/>
228
+ </else-if>
229
+ </choose>
230
+ </group>
231
+ <text macro="label-edition"/>
232
+ </group>
233
+ </else-if>
234
+ <!-- TODO: add `event-name` and `event-place` -->
235
+ <else-if match="any" type="bill legislation">
236
+ <group delimiter=". ">
237
+ <text variable="container-title"/>
238
+ <group delimiter=" ">
239
+ <text form="short" term="section" text-case="capitalize-first"/>
240
+ <text variable="section"/>
241
+ </group>
242
+ </group>
243
+ <text variable="number"/>
244
+ </else-if>
245
+ <else-if type="speech">
246
+ <group delimiter=": ">
247
+ <group delimiter=" ">
248
+ <text text-case="capitalize-first" variable="genre"/>
249
+ <text term="presented at"/>
250
+ </group>
251
+ <text variable="event"/>
252
+ </group>
253
+ </else-if>
254
+ <else>
255
+ <group delimiter=", ">
256
+ <text macro="label-volume-capitalized"/>
257
+ <text variable="volume-title"/>
258
+ </group>
259
+ <group delimiter=", ">
260
+ <text macro="label-part-number-capitalized"/>
261
+ <text variable="part-title"/>
262
+ </group>
263
+ </else>
264
+ </choose>
265
+ </group>
266
+ </macro>
267
+ <macro name="place-of-publication">
268
+ <choose>
269
+ <if type="thesis">
270
+ <text prefix="[" suffix="]" variable="publisher-place"/>
271
+ </if>
272
+ <else-if type="speech"/>
273
+ <else>
274
+ <text variable="publisher-place"/>
275
+ </else>
276
+ </choose>
277
+ </macro>
278
+ <macro name="publisher">
279
+ <choose>
280
+ <!-- discard publisher for serial publications -->
281
+ <if match="none" type="article-journal article-magazine article-newspaper periodical post-weblog review review-book">
282
+ <group delimiter=": ">
283
+ <text macro="place-of-publication"/>
284
+ <text variable="publisher"/>
285
+ </group>
286
+ </if>
287
+ </choose>
288
+ </macro>
289
+ <macro name="date">
290
+ <group delimiter=" ">
291
+ <choose>
292
+ <if match="any" type="article-journal article-magazine article-newspaper periodical post-weblog review review-book">
293
+ <group delimiter=":">
294
+ <group delimiter=" ">
295
+ <date form="text" variable="issued"/>
296
+ <choose>
297
+ <if type="article-journal" variable="DOI"/>
298
+ <else-if type="article-journal" variable="PMID"/>
299
+ <else-if type="article-journal" variable="PMCID"/>
300
+ <else>
301
+ <text macro="date-of-citation"/>
302
+ </else>
303
+ </choose>
304
+ </group>
305
+ <choose>
306
+ <if type="article-newspaper">
307
+ <text variable="page"/>
308
+ </if>
309
+ </choose>
310
+ </group>
311
+ </if>
312
+ <else-if match="any" type="bill legislation">
313
+ <date form="text" variable="issued"/>
314
+ </else-if>
315
+ <else-if type="report">
316
+ <date date-parts="year-month" form="text" variable="issued"/>
317
+ <text macro="date-of-citation"/>
318
+ </else-if>
319
+ <else-if type="patent">
320
+ <group delimiter=", ">
321
+ <text variable="number"/>
322
+ <date date-parts="year" form="numeric" variable="issued"/>
323
+ </group>
324
+ <text macro="date-of-citation"/>
325
+ </else-if>
326
+ <else-if type="speech">
327
+ <group delimiter="; ">
328
+ <group delimiter=" ">
329
+ <date form="text" variable="issued"/>
330
+ <text macro="date-of-citation"/>
331
+ </group>
332
+ <text variable="event-place"/>
333
+ </group>
334
+ </else-if>
335
+ <else>
336
+ <date date-parts="year" form="numeric" variable="issued"/>
337
+ <text macro="date-of-citation"/>
338
+ </else>
339
+ </choose>
340
+ </group>
341
+ </macro>
342
+ <macro name="identifier-serial">
343
+ <choose>
344
+ <if match="any" type="article-journal article-magazine periodical post-weblog review review-book">
345
+ <group delimiter=":">
346
+ <group>
347
+ <text variable="collection-title"/>
348
+ <text variable="volume"/>
349
+ <group delimiter=" " prefix="(" suffix=")">
350
+ <text variable="issue"/>
351
+ <text macro="label-supplement-number"/>
352
+ </group>
353
+ </group>
354
+ <text macro="location-pagination-serial"/>
355
+ </group>
356
+ </if>
357
+ </choose>
358
+ </macro>
359
+ <macro name="date-of-citation">
360
+ <choose>
361
+ <if variable="URL">
362
+ <group delimiter=" " prefix="[" suffix="]">
363
+ <text term="cited"/>
364
+ <date form="text" variable="accessed"/>
365
+ </group>
366
+ </if>
367
+ </choose>
368
+ </macro>
369
+ <macro name="location-pagination-monographic">
370
+ <group delimiter=" ">
371
+ <choose>
372
+ <if match="any" type="article-journal article-magazine article-newspaper review review-book"/>
373
+ <else-if type="book">
374
+ <text macro="label-number-of-pages"/>
375
+ </else-if>
376
+ <else>
377
+ <text macro="label-page"/>
378
+ </else>
379
+ </choose>
380
+ </group>
381
+ </macro>
382
+ <macro name="location-pagination-serial">
383
+ <choose>
384
+ <if variable="number">
385
+ <text variable="number"/>
386
+ </if>
387
+ <else>
388
+ <text variable="page"/>
389
+ </else>
390
+ </choose>
391
+ </macro>
392
+ <macro name="webpage-part">
393
+ <choose>
394
+ <if type="webpage" variable="container-title">
395
+ <text variable="title"/>
396
+ </if>
397
+ </choose>
398
+ </macro>
399
+ <macro name="series">
400
+ <choose>
401
+ <if match="any" type="article-journal article-magazine article-newspaper periodical post-weblog review review-book"/>
402
+ <else-if variable="collection-title">
403
+ <group delimiter=". " prefix="(" suffix=")">
404
+ <names variable="collection-editor">
405
+ <label prefix=", "/>
406
+ </names>
407
+ <group delimiter="; ">
408
+ <text variable="collection-title"/>
409
+ <text macro="label-collection-number"/>
410
+ </group>
411
+ </group>
412
+ </else-if>
413
+ </choose>
414
+ </macro>
415
+ <macro name="report-number">
416
+ <choose>
417
+ <if type="report" variable="number">
418
+ <group delimiter=" ">
419
+ <choose>
420
+ <if variable="genre">
421
+ <text text-case="capitalize-first" variable="genre"/>
422
+ </if>
423
+ <else>
424
+ <text term="report" text-case="capitalize-first"/>
425
+ </else>
426
+ </choose>
427
+ <text macro="label-number"/>
428
+ </group>
429
+ </if>
430
+ </choose>
431
+ </macro>
432
+ <macro name="availability">
433
+ <group delimiter=". ">
434
+ <group delimiter=": ">
435
+ <text text-case="capitalize-first" value="located at"/>
436
+ <group delimiter="; ">
437
+ <group delimiter=", ">
438
+ <text variable="archive_collection"/>
439
+ <text variable="archive"/>
440
+ <text variable="archive-place"/>
441
+ </group>
442
+ <text variable="archive_location"/>
443
+ </group>
444
+ </group>
445
+ <group delimiter=" ">
446
+ <choose>
447
+ <if type="article-journal" variable="DOI"/>
448
+ <else-if type="article-journal" variable="PMID"/>
449
+ <else-if type="article-journal" variable="PMCID"/>
450
+ <else>
451
+ <group delimiter=": ">
452
+ <text term="available at" text-case="capitalize-first"/>
453
+ <text variable="URL"/>
454
+ </group>
455
+ </else>
456
+ </choose>
457
+ </group>
458
+ </group>
459
+ </macro>
460
+ <macro name="notes">
461
+ <group delimiter=". " suffix=".">
462
+ <group delimiter="; ">
463
+ <group delimiter=": ">
464
+ <text value="PubMed PMID"/>
465
+ <text variable="PMID"/>
466
+ </group>
467
+ <group delimiter=": ">
468
+ <text value="PubMed Central PMCID"/>
469
+ <text variable="PMCID"/>
470
+ </group>
471
+ </group>
472
+ <text variable="references"/>
473
+ </group>
474
+ </macro>
475
+ <citation collapse="citation-number">
476
+ <sort>
477
+ <key variable="citation-number"/>
478
+ </sort>
479
+ <layout delimiter="," vertical-align="sup">
480
+ <text variable="citation-number"/>
481
+ </layout>
482
+ </citation>
483
+ <macro name="bibliography">
484
+ <group delimiter=" ">
485
+ <group delimiter=". " suffix=".">
486
+ <text macro="author"/>
487
+ <group delimiter=" ">
488
+ <text macro="title"/>
489
+ <text macro="content-type" prefix="[" suffix="]"/>
490
+ <choose>
491
+ <if type="webpage" variable="container-title">
492
+ <text macro="type-of-medium" prefix="[" suffix="]"/>
493
+ </if>
494
+ <else-if match="none" variable="container-title">
495
+ <text macro="type-of-medium" prefix="[" suffix="]"/>
496
+ </else-if>
497
+ </choose>
498
+ </group>
499
+ <choose>
500
+ <if match="none" variable="container-title">
501
+ <text macro="label-edition"/>
502
+ </if>
503
+ </choose>
504
+ <group delimiter=": ">
505
+ <text macro="container-preposition"/>
506
+ <group delimiter=". ">
507
+ <text macro="secondary-authors"/>
508
+ <text macro="container-title"/>
509
+ </group>
510
+ </group>
511
+ <group delimiter="; ">
512
+ <text macro="publisher"/>
513
+ <group delimiter=";">
514
+ <text macro="date"/>
515
+ <text macro="identifier-serial"/>
516
+ </group>
517
+ </group>
518
+ <text macro="location-pagination-monographic"/>
519
+ <text macro="webpage-part"/>
520
+ <text macro="series"/>
521
+ <text macro="report-number"/>
522
+ </group>
523
+ <text macro="availability"/>
524
+ <text macro="notes"/>
525
+ </group>
526
+ </macro>
527
+ <bibliography et-al-min="7" et-al-use-first="6" second-field-align="flush">
528
+ <layout>
529
+ <text suffix="." variable="citation-number"/>
530
+ <text macro="bibliography"/>
531
+ </layout>
532
+ </bibliography>
533
+ </style>
@@ -0,0 +1,16 @@
1
+ <?xml version="1.0" encoding="utf-8"?>
2
+ <style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" default-locale="en-US">
3
+ <info>
4
+ <title>Journal of Korean Medical Science</title>
5
+ <id>http://www.zotero.org/styles/journal-of-korean-medical-science</id>
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+ <link href="http://www.zotero.org/styles/journal-of-korean-medical-science" rel="self"/>
7
+ <link href="http://www.zotero.org/styles/nlm-citation-sequence" rel="independent-parent"/>
8
+ <link href="http://jkms.org/index.php?main=instruction" rel="documentation"/>
9
+ <category citation-format="numeric"/>
10
+ <category field="medicine"/>
11
+ <issn>1011-8934</issn>
12
+ <eissn>1598-6357</eissn>
13
+ <updated>2026-01-25T22:16:24+00:00</updated>
14
+ <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
15
+ </info>
16
+ </style>