medsci-skills 4.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (702) hide show
  1. package/LICENSE +50 -0
  2. package/README.md +602 -0
  3. package/README_FIRST.md +27 -0
  4. package/bin/medsci-skills.js +159 -0
  5. package/installers/install-macos.command +19 -0
  6. package/installers/install-windows.cmd +26 -0
  7. package/installers/install-windows.ps1 +17 -0
  8. package/installers/install.py +218 -0
  9. package/metadata/skills_catalog.json +452 -0
  10. package/package.json +48 -0
  11. package/skills/academic-aio/SKILL.md +408 -0
  12. package/skills/academic-aio/references/case_studies/kjr_mllm_2025.md +82 -0
  13. package/skills/academic-aio/references/checklists/AIO_GENERAL.md +354 -0
  14. package/skills/academic-aio/references/journal_summarybox_templates.yaml +126 -0
  15. package/skills/academic-aio/references/oac_funding_checklist.yaml +129 -0
  16. package/skills/academic-aio/references/reporting_guideline_mapping.md +39 -0
  17. package/skills/academic-aio/references/schema_markup_templates/CodeRepository.jsonld +32 -0
  18. package/skills/academic-aio/references/schema_markup_templates/Dataset.jsonld +36 -0
  19. package/skills/academic-aio/references/schema_markup_templates/Person.jsonld +30 -0
  20. package/skills/academic-aio/references/schema_markup_templates/README.md +43 -0
  21. package/skills/academic-aio/references/schema_markup_templates/ScholarlyArticle.jsonld +55 -0
  22. package/skills/academic-aio/scripts/batch_metadata_audit.py +169 -0
  23. package/skills/academic-aio/scripts/validate_schema.py +118 -0
  24. package/skills/academic-aio/skill.yml +36 -0
  25. package/skills/academic-aio/templates/aio_audit_checklist.md.j2 +108 -0
  26. package/skills/add-journal/SKILL.md +482 -0
  27. package/skills/add-journal/skill.yml +33 -0
  28. package/skills/analyze-stats/SKILL.md +598 -0
  29. package/skills/analyze-stats/references/analysis_guides/missing_data.md +109 -0
  30. package/skills/analyze-stats/references/analysis_guides/nhis_icd10_mapping.md +247 -0
  31. package/skills/analyze-stats/references/analysis_guides/propensity_score.md +132 -0
  32. package/skills/analyze-stats/references/analysis_guides/regression.md +115 -0
  33. package/skills/analyze-stats/references/analysis_guides/repeated_measures.md +160 -0
  34. package/skills/analyze-stats/references/analysis_guides/survey_weighted.md +366 -0
  35. package/skills/analyze-stats/references/analysis_guides/test_selection.md +86 -0
  36. package/skills/analyze-stats/references/style/figure_style.mplstyle +69 -0
  37. package/skills/analyze-stats/references/style/theme_publication.R +147 -0
  38. package/skills/analyze-stats/references/table-standards/journal-profiles/ajr.yaml +51 -0
  39. package/skills/analyze-stats/references/table-standards/journal-profiles/european_radiology.yaml +55 -0
  40. package/skills/analyze-stats/references/table-standards/journal-profiles/jama.yaml +66 -0
  41. package/skills/analyze-stats/references/table-standards/journal-profiles/lancet.yaml +57 -0
  42. package/skills/analyze-stats/references/table-standards/journal-profiles/nejm.yaml +51 -0
  43. package/skills/analyze-stats/references/table-standards/journal-profiles/radiology.yaml +66 -0
  44. package/skills/analyze-stats/references/table-standards/table-standards.md +287 -0
  45. package/skills/analyze-stats/references/table-standards/table-types/diagnostic_accuracy.md +36 -0
  46. package/skills/analyze-stats/references/table-standards/table-types/meta_analysis.md +58 -0
  47. package/skills/analyze-stats/references/table-standards/table-types/model_comparison.md +36 -0
  48. package/skills/analyze-stats/references/table-standards/table-types/regression_results.md +50 -0
  49. package/skills/analyze-stats/references/table-standards/table-types/table1_demographics.md +51 -0
  50. package/skills/analyze-stats/references/table-standards/tool-comparison.md +79 -0
  51. package/skills/analyze-stats/references/templates/agreement_analysis.py +436 -0
  52. package/skills/analyze-stats/references/templates/dca_plot.R +237 -0
  53. package/skills/analyze-stats/references/templates/diagnostic_accuracy.py +401 -0
  54. package/skills/analyze-stats/references/templates/dta_meta_analysis.R +384 -0
  55. package/skills/analyze-stats/references/templates/forest_plot.py +412 -0
  56. package/skills/analyze-stats/references/templates/likert_summary.py +356 -0
  57. package/skills/analyze-stats/references/templates/meta_analysis.R +365 -0
  58. package/skills/analyze-stats/references/templates/propensity_score.py +478 -0
  59. package/skills/analyze-stats/references/templates/regression.py +425 -0
  60. package/skills/analyze-stats/references/templates/repeated_measures.py +434 -0
  61. package/skills/analyze-stats/references/templates/sample_size.R +382 -0
  62. package/skills/analyze-stats/references/templates/survey_weighted_analysis.py +411 -0
  63. package/skills/analyze-stats/references/templates/survival_analysis.py +325 -0
  64. package/skills/analyze-stats/references/templates/table1_demographics.py +287 -0
  65. package/skills/analyze-stats/scripts/check_generated_code.py +335 -0
  66. package/skills/analyze-stats/skill.yml +38 -0
  67. package/skills/analyze-stats/tests/fixtures/gen_bad.R +16 -0
  68. package/skills/analyze-stats/tests/fixtures/gen_bad.py +24 -0
  69. package/skills/analyze-stats/tests/fixtures/gen_clean.py +21 -0
  70. package/skills/analyze-stats/tests/test_generated_code.sh +59 -0
  71. package/skills/analyze-stats/tests/test_survival_template.sh +53 -0
  72. package/skills/author-strategy/SKILL.md +117 -0
  73. package/skills/author-strategy/analyze_patterns.py +303 -0
  74. package/skills/author-strategy/fetch_pubmed.py +374 -0
  75. package/skills/author-strategy/skill.yml +34 -0
  76. package/skills/batch-cohort/SKILL.md +223 -0
  77. package/skills/batch-cohort/references/base_template_knhanes.R +210 -0
  78. package/skills/batch-cohort/references/batch_template_generator.R +222 -0
  79. package/skills/batch-cohort/references/variable_coding_registry.md +136 -0
  80. package/skills/batch-cohort/skill.yml +35 -0
  81. package/skills/calc-sample-size/SKILL.md +491 -0
  82. package/skills/calc-sample-size/references/formulas.md +655 -0
  83. package/skills/calc-sample-size/references/observational_cohort.md +49 -0
  84. package/skills/calc-sample-size/skill.yml +51 -0
  85. package/skills/check-reporting/SKILL.md +534 -0
  86. package/skills/check-reporting/references/LICENSES.md +41 -0
  87. package/skills/check-reporting/references/checklists/AMSTAR2.md +54 -0
  88. package/skills/check-reporting/references/checklists/ARRIVE_2.md +234 -0
  89. package/skills/check-reporting/references/checklists/CARE.md +102 -0
  90. package/skills/check-reporting/references/checklists/CLAIM_2024.md +128 -0
  91. package/skills/check-reporting/references/checklists/CLEAR.md +113 -0
  92. package/skills/check-reporting/references/checklists/CONSORT.md +86 -0
  93. package/skills/check-reporting/references/checklists/COSMIN_RoB.md +136 -0
  94. package/skills/check-reporting/references/checklists/GRRAS.md +61 -0
  95. package/skills/check-reporting/references/checklists/MI_CLEAR_LLM.md +167 -0
  96. package/skills/check-reporting/references/checklists/MOOSE.md +85 -0
  97. package/skills/check-reporting/references/checklists/NOS.md +88 -0
  98. package/skills/check-reporting/references/checklists/PRISMA_2020.md +135 -0
  99. package/skills/check-reporting/references/checklists/PRISMA_DTA.md +36 -0
  100. package/skills/check-reporting/references/checklists/PRISMA_P.md +56 -0
  101. package/skills/check-reporting/references/checklists/PROBAST.md +75 -0
  102. package/skills/check-reporting/references/checklists/PROBAST_AI.md +130 -0
  103. package/skills/check-reporting/references/checklists/QUADAS2.md +77 -0
  104. package/skills/check-reporting/references/checklists/QUADAS_C.md +131 -0
  105. package/skills/check-reporting/references/checklists/ROBINS_E.md +179 -0
  106. package/skills/check-reporting/references/checklists/ROBINS_I.md +87 -0
  107. package/skills/check-reporting/references/checklists/ROBIS.md +114 -0
  108. package/skills/check-reporting/references/checklists/ROB_ME.md +126 -0
  109. package/skills/check-reporting/references/checklists/RoB2.md +79 -0
  110. package/skills/check-reporting/references/checklists/RoB_NMA.md +96 -0
  111. package/skills/check-reporting/references/checklists/SPIRIT.md +112 -0
  112. package/skills/check-reporting/references/checklists/SQUIRE_2.md +68 -0
  113. package/skills/check-reporting/references/checklists/STARD.md +129 -0
  114. package/skills/check-reporting/references/checklists/STARD_AI.md +211 -0
  115. package/skills/check-reporting/references/checklists/STROBE.md +80 -0
  116. package/skills/check-reporting/references/checklists/SWiM.md +33 -0
  117. package/skills/check-reporting/references/checklists/TRIPOD.md +157 -0
  118. package/skills/check-reporting/references/checklists/TRIPOD_AI.md +140 -0
  119. package/skills/check-reporting/references/step4c_registration_timing.md +93 -0
  120. package/skills/check-reporting/references/step4d_prisma_figure_audit.md +137 -0
  121. package/skills/check-reporting/scripts/check_checklist_exists.py +183 -0
  122. package/skills/check-reporting/scripts/check_checklist_version.py +168 -0
  123. package/skills/check-reporting/scripts/check_framework_naming.py +206 -0
  124. package/skills/check-reporting/scripts/check_prisma_figure.py +209 -0
  125. package/skills/check-reporting/scripts/prisma_cascade_check.py +274 -0
  126. package/skills/check-reporting/skill.yml +41 -0
  127. package/skills/check-reporting/tests/fixtures/framework_bad.md +8 -0
  128. package/skills/check-reporting/tests/fixtures/framework_clean.md +7 -0
  129. package/skills/check-reporting/tests/test_checklist_fail_fast.sh +77 -0
  130. package/skills/check-reporting/tests/test_checklist_version.sh +72 -0
  131. package/skills/check-reporting/tests/test_framework_naming.sh +45 -0
  132. package/skills/check-reporting/tests/test_prisma_cascade.sh +104 -0
  133. package/skills/clean-data/SKILL.md +180 -0
  134. package/skills/clean-data/references/cleaning_patterns.md +299 -0
  135. package/skills/clean-data/references/profiling_template.py +304 -0
  136. package/skills/clean-data/scripts/check_structural_zero.py +174 -0
  137. package/skills/clean-data/skill.yml +35 -0
  138. package/skills/clean-data/tests/fixtures/smoking.csv +8 -0
  139. package/skills/clean-data/tests/test_structural_zero.sh +49 -0
  140. package/skills/cross-national/SKILL.md +264 -0
  141. package/skills/cross-national/skill.yml +37 -0
  142. package/skills/define-variables/SKILL.md +146 -0
  143. package/skills/define-variables/references/common_definitions.md +190 -0
  144. package/skills/define-variables/skill.yml +34 -0
  145. package/skills/define-variables/templates/variable_operationalization.md +64 -0
  146. package/skills/deidentify/SKILL.md +203 -0
  147. package/skills/deidentify/deidentify.py +1224 -0
  148. package/skills/deidentify/locales/_template.json +45 -0
  149. package/skills/deidentify/locales/au.json +43 -0
  150. package/skills/deidentify/locales/ca.json +44 -0
  151. package/skills/deidentify/locales/cn.json +47 -0
  152. package/skills/deidentify/locales/de.json +48 -0
  153. package/skills/deidentify/locales/fr.json +48 -0
  154. package/skills/deidentify/locales/in.json +48 -0
  155. package/skills/deidentify/locales/jp.json +48 -0
  156. package/skills/deidentify/locales/kr.json +48 -0
  157. package/skills/deidentify/locales/uk.json +45 -0
  158. package/skills/deidentify/locales/us.json +43 -0
  159. package/skills/deidentify/references/date_shift_guide.md +82 -0
  160. package/skills/deidentify/references/hipaa_18_identifiers.md +48 -0
  161. package/skills/deidentify/references/korean_phi_patterns.md +135 -0
  162. package/skills/deidentify/skill.yml +43 -0
  163. package/skills/deidentify/tests/README.md +26 -0
  164. package/skills/deidentify/tests/test_clean.csv +16 -0
  165. package/skills/deidentify/tests/test_edge_cases.csv +11 -0
  166. package/skills/deidentify/tests/test_phi_korean.csv +11 -0
  167. package/skills/design-ai-benchmarking/SKILL.md +214 -0
  168. package/skills/design-ai-benchmarking/references/benchmark_export_schema.json +69 -0
  169. package/skills/design-ai-benchmarking/references/elicitation_rubric_template.md +37 -0
  170. package/skills/design-ai-benchmarking/skill.yml +38 -0
  171. package/skills/design-study/SKILL.md +298 -0
  172. package/skills/design-study/skill.yml +33 -0
  173. package/skills/fill-icmje-coi/SKILL.md +216 -0
  174. package/skills/fill-icmje-coi/scripts/fill_icmje_coi.py +140 -0
  175. package/skills/fill-icmje-coi/skill.yml +35 -0
  176. package/skills/fill-icmje-coi/templates/icmje_coi_seed_synthetic.docx +0 -0
  177. package/skills/fill-protocol/SKILL.md +248 -0
  178. package/skills/fill-protocol/examples/example_irb_template.yaml +53 -0
  179. package/skills/fill-protocol/references/best_practices.md +121 -0
  180. package/skills/fill-protocol/scripts/doc_to_docx.py +111 -0
  181. package/skills/fill-protocol/scripts/fill_form.py +611 -0
  182. package/skills/fill-protocol/scripts/inspect_template.py +61 -0
  183. package/skills/fill-protocol/setup.sh +162 -0
  184. package/skills/fill-protocol/skill.yml +37 -0
  185. package/skills/find-cohort-gap/SKILL.md +309 -0
  186. package/skills/find-cohort-gap/references/cohort_profile_template.md +93 -0
  187. package/skills/find-cohort-gap/references/onepager_template.md +84 -0
  188. package/skills/find-cohort-gap/references/pattern_scoring_rubric.md +169 -0
  189. package/skills/find-cohort-gap/references/saturation_query_templates.md +143 -0
  190. package/skills/find-cohort-gap/skill.yml +35 -0
  191. package/skills/find-journal/POLICY.md +87 -0
  192. package/skills/find-journal/SKILL.md +340 -0
  193. package/skills/find-journal/references/journal_profiles/AJNR.md +29 -0
  194. package/skills/find-journal/references/journal_profiles/AJR.md +30 -0
  195. package/skills/find-journal/references/journal_profiles/Abdominal_Radiology.md +30 -0
  196. package/skills/find-journal/references/journal_profiles/Academic_Radiology.md +30 -0
  197. package/skills/find-journal/references/journal_profiles/Annals_of_Internal_Medicine.md +33 -0
  198. package/skills/find-journal/references/journal_profiles/Artificial_Intelligence_in_Medicine.md +28 -0
  199. package/skills/find-journal/references/journal_profiles/BMC_Medicine.md +31 -0
  200. package/skills/find-journal/references/journal_profiles/British_Journal_of_Radiology.md +39 -0
  201. package/skills/find-journal/references/journal_profiles/CVIR.md +30 -0
  202. package/skills/find-journal/references/journal_profiles/Chest.md +39 -0
  203. package/skills/find-journal/references/journal_profiles/Clinical_Radiology.md +30 -0
  204. package/skills/find-journal/references/journal_profiles/Clinical_and_Molecular_Hepatology.md +32 -0
  205. package/skills/find-journal/references/journal_profiles/Diabetes_Metabolism_Journal.md +36 -0
  206. package/skills/find-journal/references/journal_profiles/Diagnostic_and_Interventional_Radiology.md +32 -0
  207. package/skills/find-journal/references/journal_profiles/Endocrinology_and_Metabolism.md +37 -0
  208. package/skills/find-journal/references/journal_profiles/European_Journal_of_Preventive_Cardiology.md +39 -0
  209. package/skills/find-journal/references/journal_profiles/European_Radiology.md +29 -0
  210. package/skills/find-journal/references/journal_profiles/Hepatology_Communications.md +40 -0
  211. package/skills/find-journal/references/journal_profiles/Hepatology_International.md +37 -0
  212. package/skills/find-journal/references/journal_profiles/IEEE_JBHI.md +28 -0
  213. package/skills/find-journal/references/journal_profiles/IEEE_TMI.md +28 -0
  214. package/skills/find-journal/references/journal_profiles/INSI.md +29 -0
  215. package/skills/find-journal/references/journal_profiles/Investigative_Radiology.md +25 -0
  216. package/skills/find-journal/references/journal_profiles/JACC_Advances.md +41 -0
  217. package/skills/find-journal/references/journal_profiles/JACC_Asia.md +30 -0
  218. package/skills/find-journal/references/journal_profiles/JACR.md +28 -0
  219. package/skills/find-journal/references/journal_profiles/JAMA.md +40 -0
  220. package/skills/find-journal/references/journal_profiles/JAMA_Network_Open.md +30 -0
  221. package/skills/find-journal/references/journal_profiles/JCSM.md +39 -0
  222. package/skills/find-journal/references/journal_profiles/JKMS.md +32 -0
  223. package/skills/find-journal/references/journal_profiles/JMIR.md +29 -0
  224. package/skills/find-journal/references/journal_profiles/JMIR_Medical_Education.md +29 -0
  225. package/skills/find-journal/references/journal_profiles/JNIS.md +35 -0
  226. package/skills/find-journal/references/journal_profiles/JVIR.md +31 -0
  227. package/skills/find-journal/references/journal_profiles/Journal_of_Biomedical_Informatics.md +29 -0
  228. package/skills/find-journal/references/journal_profiles/Journal_of_Clinical_Endocrinology_and_Metabolism.md +40 -0
  229. package/skills/find-journal/references/journal_profiles/Journal_of_Magnetic_Resonance_Imaging.md +30 -0
  230. package/skills/find-journal/references/journal_profiles/Journal_of_Nuclear_Medicine.md +31 -0
  231. package/skills/find-journal/references/journal_profiles/Journal_of_Stroke.md +32 -0
  232. package/skills/find-journal/references/journal_profiles/KJR.md +38 -0
  233. package/skills/find-journal/references/journal_profiles/Korean_Circulation_Journal.md +38 -0
  234. package/skills/find-journal/references/journal_profiles/Korean_Journal_of_Internal_Medicine.md +36 -0
  235. package/skills/find-journal/references/journal_profiles/Lancet_Diabetes_and_Endocrinology.md +40 -0
  236. package/skills/find-journal/references/journal_profiles/Lancet_Gastroenterology_and_Hepatology.md +49 -0
  237. package/skills/find-journal/references/journal_profiles/Lancet_Infectious_Diseases.md +38 -0
  238. package/skills/find-journal/references/journal_profiles/Lancet_Neurology.md +39 -0
  239. package/skills/find-journal/references/journal_profiles/Lancet_Oncology.md +40 -0
  240. package/skills/find-journal/references/journal_profiles/Lancet_Psychiatry.md +38 -0
  241. package/skills/find-journal/references/journal_profiles/Lancet_Public_Health.md +30 -0
  242. package/skills/find-journal/references/journal_profiles/Lancet_Respiratory_Medicine.md +39 -0
  243. package/skills/find-journal/references/journal_profiles/Liver_International.md +33 -0
  244. package/skills/find-journal/references/journal_profiles/Medical_Image_Analysis.md +28 -0
  245. package/skills/find-journal/references/journal_profiles/NEJM.md +33 -0
  246. package/skills/find-journal/references/journal_profiles/Nature_Machine_Intelligence.md +31 -0
  247. package/skills/find-journal/references/journal_profiles/Nature_Medicine.md +39 -0
  248. package/skills/find-journal/references/journal_profiles/Neuroradiology.md +31 -0
  249. package/skills/find-journal/references/journal_profiles/Nutrition_Metabolism_and_Cardiovascular_Diseases.md +39 -0
  250. package/skills/find-journal/references/journal_profiles/PLOS_Medicine.md +32 -0
  251. package/skills/find-journal/references/journal_profiles/RYAI.md +28 -0
  252. package/skills/find-journal/references/journal_profiles/Radiology.md +29 -0
  253. package/skills/find-journal/references/journal_profiles/Skeletal_Radiology.md +31 -0
  254. package/skills/find-journal/references/journal_profiles/Stroke.md +37 -0
  255. package/skills/find-journal/references/journal_profiles/The_BMJ.md +31 -0
  256. package/skills/find-journal/references/journal_profiles/The_Lancet.md +31 -0
  257. package/skills/find-journal/references/journal_profiles/The_Lancet_Digital_Health.md +29 -0
  258. package/skills/find-journal/references/journal_profiles/World_Journal_of_Hepatology.md +53 -0
  259. package/skills/find-journal/references/journal_profiles/npj_Digital_Medicine.md +29 -0
  260. package/skills/find-journal/skill.yml +34 -0
  261. package/skills/fulltext-retrieval/SKILL.md +174 -0
  262. package/skills/fulltext-retrieval/fetch_oa.py +433 -0
  263. package/skills/fulltext-retrieval/pdf_to_md.py +160 -0
  264. package/skills/fulltext-retrieval/skill.yml +41 -0
  265. package/skills/generate-codebook/SKILL.md +155 -0
  266. package/skills/generate-codebook/references/codebook_schema.md +76 -0
  267. package/skills/generate-codebook/scripts/generate_codebook.py +278 -0
  268. package/skills/generate-codebook/skill.yml +35 -0
  269. package/skills/generate-codebook/tests/test_generate_codebook.sh +76 -0
  270. package/skills/grant-builder/SKILL.md +251 -0
  271. package/skills/grant-builder/skill.yml +34 -0
  272. package/skills/humanize/SKILL.md +251 -0
  273. package/skills/humanize/references/ai_patterns.md +571 -0
  274. package/skills/humanize/skill.yml +33 -0
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@@ -0,0 +1,688 @@
1
+ #!/usr/bin/env python3
2
+ """Nature/Lancet style PPTX builder — academic lecture / journal club / conference.
3
+
4
+ Generic template — pass slide content via builder functions. Speaker notes are
5
+ written in the user's preferred language (English by default; a Korean narrative
6
+ register is also supported for Korean presenters); slide body in English.
7
+
8
+ Color palette + typography + layout grid per:
9
+ references/slide_visual_styles/nature_lancet.md
10
+
11
+ Mac PowerPoint compatibility per:
12
+ ~/.claude/rules/pptx-mac-compatibility.md
13
+ → run fix_app_xml() after final save (function included below)
14
+
15
+ Usage (illustrative):
16
+ from build_pptx_nature_lancet import (
17
+ new_presentation, add_title_slide, add_toc_slide, add_section_divider,
18
+ add_transition_slide, add_content_slide, add_closing_slide,
19
+ fix_app_xml,
20
+ )
21
+
22
+ prs = new_presentation()
23
+ add_title_slide(prs,
24
+ eyebrow="REVIEW LECTURE",
25
+ title="<Lecture title in English>",
26
+ subtitle="<One-line scope or lighthouse-paper subtitle>",
27
+ meta_top="<Course> · <Instructor> · <Date>",
28
+ meta_bottom="Presenter <Name> · <Department / Affiliation>",
29
+ notes="<speaker notes in the user's preferred language>")
30
+
31
+ add_toc_slide(prs, sections=[
32
+ ("01", "<Section A title>", "<one-line summary>", "5 min"),
33
+ ("02", "<Section B title>", "<one-line summary>", "8 min"),
34
+ # ...
35
+ ], notes="<...>", page_brand="<YEAR · COURSE NAME>")
36
+
37
+ add_section_divider(prs, num="01", title="<Section A title>",
38
+ subtitle="<lighthouse paper or section theme>", time_min=5)
39
+
40
+ add_content_slide(prs,
41
+ eyebrow="<COURSE / TOPIC LABEL>",
42
+ title="<Sentence-headline title>",
43
+ subtitle="<Author et al, Journal YYYY — n=...>",
44
+ bullets=[
45
+ "**Bold** main bullet",
46
+ " Sub bullet (prefix with 2 spaces)",
47
+ "Another main bullet with *italic*",
48
+ ],
49
+ figure_path="figures/<your_fig>.png",
50
+ fig_caption="<Short caption>",
51
+ footnote="<Author et al, Journal YYYY>",
52
+ page_brand="<YEAR · COURSE NAME>",
53
+ notes="<notes in the user's preferred language>")
54
+
55
+ add_closing_slide(prs, title="Take-home messages", bullets=[...], notes="...")
56
+
57
+ out = Path("output.pptx")
58
+ prs.save(out)
59
+ fix_app_xml(out)
60
+ """
61
+ from __future__ import annotations
62
+
63
+ import re
64
+ import shutil
65
+ import zipfile
66
+ from pathlib import Path
67
+ from typing import Iterable, Sequence
68
+
69
+ from pptx import Presentation
70
+ from pptx.util import Inches, Pt, Emu
71
+ from pptx.enum.text import PP_ALIGN, MSO_ANCHOR
72
+ from pptx.dml.color import RGBColor
73
+ from pptx.enum.shapes import MSO_SHAPE
74
+ from lxml import etree
75
+
76
+
77
+ # ============================================================================
78
+ # Style tokens — keep in sync with references/slide_visual_styles/nature_lancet.md
79
+ # ============================================================================
80
+
81
+ COLOR_NAVY = RGBColor(0x1B, 0x2A, 0x4E)
82
+ COLOR_NAVY_LIGHT = RGBColor(0x3F, 0x5A, 0x8C)
83
+ COLOR_TEXT = RGBColor(0x21, 0x25, 0x2B)
84
+ COLOR_TEXT_SUB = RGBColor(0x4A, 0x52, 0x5C)
85
+ COLOR_MUTED = RGBColor(0x8A, 0x92, 0x9E)
86
+ COLOR_HAIRLINE = RGBColor(0xCC, 0xD0, 0xD6)
87
+ COLOR_HIGHLIGHT = RGBColor(0xB8, 0x3E, 0x3A)
88
+ COLOR_WHITE = RGBColor(0xFF, 0xFF, 0xFF)
89
+ COLOR_BG_SOFT = RGBColor(0xF8, 0xF9, 0xFB)
90
+ COLOR_DIVIDER_BG = RGBColor(0x12, 0x1D, 0x36)
91
+ COLOR_DIVIDER_SUB = RGBColor(0xC0, 0xCB, 0xDC)
92
+
93
+ SLIDE_W = Inches(13.333)
94
+ SLIDE_H = Inches(7.5)
95
+
96
+ FONT_KR = "Pretendard"
97
+ FONT_EN = "Inter"
98
+
99
+ A_NS = "http://schemas.openxmlformats.org/drawingml/2006/main"
100
+
101
+
102
+ # ============================================================================
103
+ # Text helpers
104
+ # ============================================================================
105
+
106
+ def set_run(run, *, size: float = 20, bold: bool = False, italic: bool = False,
107
+ color: RGBColor = COLOR_TEXT, ko: str = FONT_KR, en: str = FONT_EN,
108
+ letter_space: str | None = None) -> None:
109
+ """Apply Nature/Lancet font + size + color, with eastAsia attribute for Korean."""
110
+ run.font.size = Pt(size)
111
+ run.font.bold = bold
112
+ run.font.italic = italic
113
+ run.font.color.rgb = color
114
+ run.font.name = en
115
+ rPr = run._r.get_or_add_rPr()
116
+ for ea in rPr.findall(f"{{{A_NS}}}ea"):
117
+ rPr.remove(ea)
118
+ ea = etree.SubElement(rPr, f"{{{A_NS}}}ea")
119
+ ea.set("typeface", ko)
120
+ if letter_space is not None:
121
+ rPr.set("spc", str(letter_space))
122
+
123
+
124
+ _MD_PATTERN = re.compile(r"(\*\*[^*\n]+\*\*|\*[^*\n]+\*)")
125
+
126
+
127
+ def add_styled(p, text: str, *, size: float = 20, color: RGBColor = COLOR_TEXT,
128
+ ko: str = FONT_KR, en: str = FONT_EN) -> None:
129
+ """Add a paragraph run with minimal markdown (**bold** / *italic*) parsed inline."""
130
+ for part in _MD_PATTERN.split(text):
131
+ if not part:
132
+ continue
133
+ r = p.add_run()
134
+ if part.startswith("**") and part.endswith("**"):
135
+ r.text = part[2:-2]
136
+ set_run(r, size=size, bold=True, color=color, ko=ko, en=en)
137
+ elif part.startswith("*") and part.endswith("*") and len(part) > 2:
138
+ r.text = part[1:-1]
139
+ set_run(r, size=size, italic=True, color=color, ko=ko, en=en)
140
+ else:
141
+ r.text = part
142
+ set_run(r, size=size, color=color, ko=ko, en=en)
143
+
144
+
145
+ def add_notes(slide, text: str | None) -> None:
146
+ """Inject speaker notes in the user's preferred language (with **bold**/*italic* parsed per run)."""
147
+ if not text:
148
+ return
149
+ tf = slide.notes_slide.notes_text_frame
150
+ tf.text = ""
151
+ for i, line in enumerate(text.strip().split("\n")):
152
+ p = tf.paragraphs[0] if i == 0 else tf.add_paragraph()
153
+ if not line.strip():
154
+ r = p.add_run(); r.text = " "
155
+ set_run(r, size=12)
156
+ else:
157
+ add_styled(p, line, size=13)
158
+
159
+
160
+ # ============================================================================
161
+ # Presentation initialization
162
+ # ============================================================================
163
+
164
+ def new_presentation(width_in: float = 13.333, height_in: float = 7.5) -> Presentation:
165
+ """Create a 16:9 widescreen Presentation with the Nature/Lancet defaults."""
166
+ prs = Presentation()
167
+ prs.slide_width = Inches(width_in)
168
+ prs.slide_height = Inches(height_in)
169
+ return prs
170
+
171
+
172
+ def _blank(prs: Presentation):
173
+ """Return a blank-layout slide (layouts[6] is blank in default template)."""
174
+ return prs.slides.add_slide(prs.slide_layouts[6])
175
+
176
+
177
+ # ============================================================================
178
+ # Slide builders
179
+ # ============================================================================
180
+
181
+ def add_title_slide(prs: Presentation, *,
182
+ eyebrow: str,
183
+ title: str,
184
+ subtitle: str | None = None,
185
+ meta_top: str | None = None,
186
+ meta_bottom: str | None = None,
187
+ notes: str | None = None):
188
+ s = _blank(prs)
189
+
190
+ bar = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
191
+ Inches(0.7), Inches(2.2), Emu(40000), Inches(3.5))
192
+ bar.fill.solid(); bar.fill.fore_color.rgb = COLOR_NAVY
193
+ bar.line.fill.background()
194
+
195
+ eye = s.shapes.add_textbox(Inches(1.1), Inches(2.2), Inches(10), Inches(0.5))
196
+ p = eye.text_frame.paragraphs[0]
197
+ r = p.add_run(); r.text = eyebrow
198
+ set_run(r, size=14, bold=True, color=COLOR_HIGHLIGHT, letter_space="300")
199
+
200
+ box = s.shapes.add_textbox(Inches(1.1), Inches(2.7), Inches(11.5), Inches(2.5))
201
+ tf = box.text_frame; tf.word_wrap = True
202
+ p = tf.paragraphs[0]; p.alignment = PP_ALIGN.LEFT
203
+ r = p.add_run(); r.text = title
204
+ set_run(r, size=48, bold=True, color=COLOR_NAVY)
205
+ p.space_after = Pt(8)
206
+ if subtitle:
207
+ p2 = tf.add_paragraph(); p2.alignment = PP_ALIGN.LEFT
208
+ r2 = p2.add_run(); r2.text = subtitle
209
+ set_run(r2, size=18, italic=True, color=COLOR_TEXT_SUB)
210
+
211
+ if meta_top or meta_bottom:
212
+ line = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
213
+ Inches(1.1), Inches(5.95), Inches(2.0), Emu(8000))
214
+ line.fill.solid(); line.fill.fore_color.rgb = COLOR_NAVY
215
+ line.line.fill.background()
216
+
217
+ sub = s.shapes.add_textbox(Inches(1.1), Inches(6.0), Inches(11.5), Inches(1.0))
218
+ stf = sub.text_frame; stf.word_wrap = True
219
+ rows = [
220
+ (meta_top, 16, True, COLOR_NAVY),
221
+ (meta_bottom, 13, False, COLOR_TEXT_SUB),
222
+ ]
223
+ first = True
224
+ for text, sz, bld, col in rows:
225
+ if not text:
226
+ continue
227
+ p = stf.paragraphs[0] if first else stf.add_paragraph()
228
+ first = False
229
+ p.alignment = PP_ALIGN.LEFT
230
+ p.space_after = Pt(4)
231
+ r = p.add_run(); r.text = text
232
+ set_run(r, size=sz, bold=bld, color=col)
233
+
234
+ add_notes(s, notes)
235
+ return s
236
+
237
+
238
+ def add_section_divider(prs: Presentation, *,
239
+ num: str,
240
+ title: str,
241
+ subtitle: str | None = None,
242
+ time_min: int | None = None,
243
+ notes: str | None = None):
244
+ s = _blank(prs)
245
+
246
+ bg = s.shapes.add_shape(MSO_SHAPE.RECTANGLE, Inches(0), Inches(0), SLIDE_W, SLIDE_H)
247
+ bg.fill.solid(); bg.fill.fore_color.rgb = COLOR_DIVIDER_BG
248
+ bg.line.fill.background()
249
+
250
+ accent = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
251
+ Inches(1.2), Inches(3.0), Emu(15000), Inches(1.8))
252
+ accent.fill.solid(); accent.fill.fore_color.rgb = COLOR_HIGHLIGHT
253
+ accent.line.fill.background()
254
+
255
+ num_box = s.shapes.add_textbox(Inches(1.5), Inches(2.5), Inches(3), Inches(1.5))
256
+ p = num_box.text_frame.paragraphs[0]; p.alignment = PP_ALIGN.LEFT
257
+ r = p.add_run(); r.text = f"SECTION {num}"
258
+ set_run(r, size=18, bold=True, color=COLOR_HIGHLIGHT, letter_space="400")
259
+
260
+ title_box = s.shapes.add_textbox(Inches(1.5), Inches(3.1), Inches(10), Inches(2.5))
261
+ tf = title_box.text_frame; tf.word_wrap = True
262
+ p = tf.paragraphs[0]; p.alignment = PP_ALIGN.LEFT
263
+ r = p.add_run(); r.text = title
264
+ set_run(r, size=52, bold=True, color=COLOR_WHITE)
265
+ p.space_after = Pt(8)
266
+ if subtitle:
267
+ p2 = tf.add_paragraph(); p2.alignment = PP_ALIGN.LEFT
268
+ r2 = p2.add_run(); r2.text = subtitle
269
+ set_run(r2, size=20, italic=True, color=COLOR_DIVIDER_SUB)
270
+
271
+ if time_min is not None:
272
+ time_box = s.shapes.add_textbox(Inches(11.0), Inches(6.5), Inches(2.0), Inches(0.5))
273
+ p = time_box.text_frame.paragraphs[0]; p.alignment = PP_ALIGN.RIGHT
274
+ r = p.add_run(); r.text = f"{time_min} MIN"
275
+ set_run(r, size=13, bold=True, color=COLOR_MUTED, letter_space="500")
276
+
277
+ add_notes(s, notes)
278
+ return s
279
+
280
+
281
+ def add_transition_slide(prs: Presentation, *,
282
+ question: str,
283
+ notes: str | None = None):
284
+ s = _blank(prs)
285
+ bg = s.shapes.add_shape(MSO_SHAPE.RECTANGLE, Inches(0), Inches(0), SLIDE_W, SLIDE_H)
286
+ bg.fill.solid(); bg.fill.fore_color.rgb = COLOR_DIVIDER_BG
287
+ bg.line.fill.background()
288
+
289
+ box = s.shapes.add_textbox(Inches(1.5), Inches(2.5), Inches(10.3), Inches(2.8))
290
+ tf = box.text_frame; tf.word_wrap = True
291
+ tf.vertical_anchor = MSO_ANCHOR.MIDDLE
292
+ p = tf.paragraphs[0]; p.alignment = PP_ALIGN.CENTER
293
+
294
+ q = p.add_run(); q.text = "“ "
295
+ set_run(q, size=72, bold=True, color=COLOR_HIGHLIGHT)
296
+ r = p.add_run(); r.text = question
297
+ set_run(r, size=36, bold=True, color=COLOR_WHITE)
298
+ q2 = p.add_run(); q2.text = " ”"
299
+ set_run(q2, size=72, bold=True, color=COLOR_HIGHLIGHT)
300
+
301
+ add_notes(s, notes)
302
+ return s
303
+
304
+
305
+ def add_content_slide(prs: Presentation, *,
306
+ eyebrow: str,
307
+ title: str,
308
+ subtitle: str | None = None,
309
+ bullets: Sequence[str] = (),
310
+ figure_path: str | Path | None = None,
311
+ fig_caption: str | None = None,
312
+ footnote: str | None = None,
313
+ page_brand: str | None = None,
314
+ notes: str | None = None):
315
+ """Standard content slide. Bullets prefixed with two spaces become sub-bullets."""
316
+ s = _blank(prs)
317
+
318
+ eye = s.shapes.add_textbox(Inches(0.7), Inches(0.32), Inches(8), Inches(0.4))
319
+ p = eye.text_frame.paragraphs[0]
320
+ r = p.add_run(); r.text = eyebrow
321
+ set_run(r, size=10, bold=True, color=COLOR_MUTED, letter_space="300")
322
+
323
+ title_box = s.shapes.add_textbox(Inches(0.7), Inches(0.75), Inches(12.0), Inches(1.1))
324
+ ttf = title_box.text_frame; ttf.word_wrap = True
325
+ p = ttf.paragraphs[0]; p.alignment = PP_ALIGN.LEFT
326
+ r = p.add_run(); r.text = title
327
+ set_run(r, size=30, bold=True, color=COLOR_NAVY)
328
+ p.space_after = Pt(3)
329
+ if subtitle:
330
+ p2 = ttf.add_paragraph(); p2.alignment = PP_ALIGN.LEFT
331
+ r2 = p2.add_run(); r2.text = subtitle
332
+ set_run(r2, size=15, italic=True, color=COLOR_TEXT_SUB)
333
+
334
+ line = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
335
+ Inches(0.7), Inches(2.05), Inches(0.6), Emu(20000))
336
+ line.fill.solid(); line.fill.fore_color.rgb = COLOR_HIGHLIGHT
337
+ line.line.fill.background()
338
+
339
+ has_fig = figure_path is not None and Path(figure_path).exists()
340
+ if has_fig:
341
+ bullet_w = Inches(6.8)
342
+ fig_x_in, fig_w_in, fig_h_in = 7.9, 5.0, 4.0
343
+ else:
344
+ bullet_w = Inches(12.0)
345
+
346
+ bullet_box = s.shapes.add_textbox(Inches(0.7), Inches(2.4), bullet_w, Inches(4.6))
347
+ btf = bullet_box.text_frame; btf.word_wrap = True
348
+ for i, raw in enumerate(bullets):
349
+ p = btf.paragraphs[0] if i == 0 else btf.add_paragraph()
350
+ p.alignment = PP_ALIGN.LEFT
351
+ p.space_after = Pt(10)
352
+ p.line_spacing = 1.25
353
+
354
+ is_sub = raw.startswith(" ")
355
+ if is_sub:
356
+ p.level = 1
357
+ text = raw[2:]
358
+ r = p.add_run(); r.text = "— "
359
+ set_run(r, size=15, color=COLOR_MUTED)
360
+ add_styled(p, text, size=16, color=COLOR_TEXT_SUB)
361
+ else:
362
+ r = p.add_run(); r.text = "▪ "
363
+ set_run(r, size=14, bold=True, color=COLOR_HIGHLIGHT)
364
+ add_styled(p, raw, size=20, color=COLOR_TEXT)
365
+
366
+ if has_fig:
367
+ from PIL import Image as PILImage
368
+ img = PILImage.open(figure_path)
369
+ iw, ih = img.size
370
+ ar = iw / ih # width / height
371
+ if ar > fig_w_in / fig_h_in:
372
+ w_in = fig_w_in
373
+ h_in = fig_w_in / ar
374
+ else:
375
+ h_in = fig_h_in
376
+ w_in = fig_h_in * ar
377
+
378
+ fx_in = fig_x_in + (fig_w_in - w_in) / 2
379
+ fy_in = 2.4 + (fig_h_in - h_in) / 2
380
+
381
+ shadow = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
382
+ Inches(fx_in + 0.06), Inches(fy_in + 0.06),
383
+ Inches(w_in), Inches(h_in))
384
+ shadow.fill.solid(); shadow.fill.fore_color.rgb = COLOR_HAIRLINE
385
+ shadow.line.fill.background()
386
+
387
+ pic = s.shapes.add_picture(str(figure_path),
388
+ Inches(fx_in), Inches(fy_in),
389
+ Inches(w_in), Inches(h_in))
390
+ pic.line.color.rgb = COLOR_HAIRLINE
391
+ pic.line.width = Emu(6000)
392
+
393
+ if fig_caption:
394
+ cap_y_in = min(fy_in + h_in + 0.10, 6.55)
395
+ cap = s.shapes.add_textbox(Inches(fig_x_in), Inches(cap_y_in),
396
+ Inches(fig_w_in), Inches(0.6))
397
+ ctf = cap.text_frame; ctf.word_wrap = True
398
+ cp = ctf.paragraphs[0]; cp.alignment = PP_ALIGN.CENTER
399
+ cr = cp.add_run(); cr.text = "Figure · "
400
+ set_run(cr, size=10, bold=True, color=COLOR_HIGHLIGHT, letter_space="200")
401
+ cr2 = cp.add_run(); cr2.text = fig_caption
402
+ set_run(cr2, size=11, italic=True, color=COLOR_MUTED)
403
+
404
+ if footnote:
405
+ fn = s.shapes.add_textbox(Inches(0.7), Inches(7.05), Inches(12.0), Inches(0.35))
406
+ fp = fn.text_frame.paragraphs[0]; fp.alignment = PP_ALIGN.RIGHT
407
+ rr = fp.add_run(); rr.text = footnote
408
+ set_run(rr, size=10, italic=True, color=COLOR_MUTED)
409
+
410
+ if page_brand:
411
+ pb = s.shapes.add_textbox(Inches(0.7), Inches(7.05), Inches(4.0), Inches(0.35))
412
+ p = pb.text_frame.paragraphs[0]
413
+ r = p.add_run(); r.text = page_brand
414
+ set_run(r, size=9, color=COLOR_MUTED, letter_space="300")
415
+
416
+ add_notes(s, notes)
417
+ return s
418
+
419
+
420
+ def add_toc_slide(prs: Presentation, *,
421
+ sections: Sequence[tuple[str, str, str, str]],
422
+ subtitle: str = "",
423
+ page_brand: str | None = None,
424
+ notes: str | None = None):
425
+ """Outline slide. `sections` = [(num, title, summary, time_label), ...].
426
+
427
+ Use num="·" for non-numbered final entry (e.g., wrap-up).
428
+ """
429
+ s = _blank(prs)
430
+
431
+ eye = s.shapes.add_textbox(Inches(0.7), Inches(0.32), Inches(8), Inches(0.4))
432
+ p = eye.text_frame.paragraphs[0]
433
+ r = p.add_run(); r.text = "OUTLINE"
434
+ set_run(r, size=11, bold=True, color=COLOR_HIGHLIGHT, letter_space="400")
435
+
436
+ tb = s.shapes.add_textbox(Inches(0.7), Inches(0.8), Inches(12), Inches(1.0))
437
+ p = tb.text_frame.paragraphs[0]
438
+ r = p.add_run(); r.text = "Outline"
439
+ set_run(r, size=32, bold=True, color=COLOR_NAVY)
440
+ if subtitle:
441
+ p2 = tb.text_frame.add_paragraph()
442
+ r2 = p2.add_run(); r2.text = subtitle
443
+ set_run(r2, size=16, italic=True, color=COLOR_TEXT_SUB)
444
+
445
+ line = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
446
+ Inches(0.7), Inches(2.1), Inches(0.6), Emu(20000))
447
+ line.fill.solid(); line.fill.fore_color.rgb = COLOR_HIGHLIGHT
448
+ line.line.fill.background()
449
+
450
+ y_start = 2.5
451
+ row_h = 0.85
452
+ for i, (num, sec_title, summary, time_label) in enumerate(sections):
453
+ y = y_start + i * row_h
454
+
455
+ nb = s.shapes.add_textbox(Inches(0.7), Inches(y), Inches(1.0), Inches(row_h))
456
+ np_ = nb.text_frame.paragraphs[0]; np_.alignment = PP_ALIGN.LEFT
457
+ nr = np_.add_run(); nr.text = num
458
+ set_run(nr, size=22, bold=True,
459
+ color=COLOR_HIGHLIGHT if num != "·" else COLOR_MUTED)
460
+
461
+ tb2 = s.shapes.add_textbox(Inches(1.9), Inches(y), Inches(9.5), Inches(row_h))
462
+ tt = tb2.text_frame; tt.word_wrap = True
463
+ p = tt.paragraphs[0]; p.alignment = PP_ALIGN.LEFT
464
+ r = p.add_run(); r.text = sec_title
465
+ set_run(r, size=22, bold=True, color=COLOR_NAVY)
466
+ p.space_after = Pt(2)
467
+ p2 = tt.add_paragraph()
468
+ r2 = p2.add_run(); r2.text = summary
469
+ set_run(r2, size=13, color=COLOR_TEXT_SUB)
470
+
471
+ if time_label:
472
+ time_b = s.shapes.add_textbox(Inches(11.5), Inches(y + 0.1),
473
+ Inches(1.5), Inches(0.5))
474
+ p = time_b.text_frame.paragraphs[0]; p.alignment = PP_ALIGN.RIGHT
475
+ r = p.add_run(); r.text = time_label
476
+ set_run(r, size=12, color=COLOR_MUTED)
477
+
478
+ if i < len(sections) - 1:
479
+ divider = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
480
+ Inches(0.7), Inches(y + row_h - 0.04),
481
+ Inches(12.0), Emu(6000))
482
+ divider.fill.solid(); divider.fill.fore_color.rgb = COLOR_HAIRLINE
483
+ divider.line.fill.background()
484
+
485
+ if page_brand:
486
+ pf = s.shapes.add_textbox(Inches(0.7), Inches(7.05), Inches(12.0), Inches(0.35))
487
+ pp_ = pf.text_frame.paragraphs[0]
488
+ pr_ = pp_.add_run(); pr_.text = page_brand
489
+ set_run(pr_, size=9, color=COLOR_MUTED, letter_space="300")
490
+
491
+ add_notes(s, notes)
492
+ return s
493
+
494
+
495
+ def add_glossary_slide(prs: Presentation, *,
496
+ eyebrow: str = "KEY ABBREVIATIONS",
497
+ title: str = "Glossary",
498
+ tier1: Sequence[tuple[str, str]] = (),
499
+ tier2: Sequence[tuple[str, str]] = (),
500
+ page_brand: str | None = None,
501
+ notes: str | None = None):
502
+ """Glossary slide for multidisciplinary audiences.
503
+
504
+ tier1: [(abbreviation, one-line context), ...] — disease/concept (4–7 items)
505
+ tier2: [(abbreviation, short definition), ...] — method/statistics (8–12 items, rendered 2-column)
506
+
507
+ See ~/.claude/rules/multidisciplinary-presentation.md §1.
508
+ """
509
+ s = _blank(prs)
510
+
511
+ eye = s.shapes.add_textbox(Inches(0.7), Inches(0.32), Inches(8), Inches(0.4))
512
+ p = eye.text_frame.paragraphs[0]
513
+ r = p.add_run(); r.text = eyebrow
514
+ set_run(r, size=10, bold=True, color=COLOR_MUTED, letter_space="300")
515
+
516
+ tb = s.shapes.add_textbox(Inches(0.7), Inches(0.75), Inches(12.0), Inches(0.8))
517
+ p = tb.text_frame.paragraphs[0]
518
+ r = p.add_run(); r.text = title
519
+ set_run(r, size=30, bold=True, color=COLOR_NAVY)
520
+
521
+ line = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
522
+ Inches(0.7), Inches(1.65), Inches(0.6), Emu(20000))
523
+ line.fill.solid(); line.fill.fore_color.rgb = COLOR_HIGHLIGHT
524
+ line.line.fill.background()
525
+
526
+ # Tier 1 — full width
527
+ if tier1:
528
+ box = s.shapes.add_textbox(Inches(0.7), Inches(1.9), Inches(12.0), Inches(2.3))
529
+ tf = box.text_frame; tf.word_wrap = True
530
+ for i, (abbr, ctx) in enumerate(tier1):
531
+ p = tf.paragraphs[0] if i == 0 else tf.add_paragraph()
532
+ p.alignment = PP_ALIGN.LEFT
533
+ p.space_after = Pt(6)
534
+ r = p.add_run(); r.text = f"{abbr} "
535
+ set_run(r, size=15, bold=True, color=COLOR_NAVY)
536
+ r2 = p.add_run(); r2.text = ctx
537
+ set_run(r2, size=14, color=COLOR_TEXT_SUB)
538
+
539
+ # Tier 2 — 2-column
540
+ if tier2:
541
+ half = (len(tier2) + 1) // 2
542
+ for col, items in enumerate((tier2[:half], tier2[half:])):
543
+ x_in = 0.7 + col * 6.3
544
+ box = s.shapes.add_textbox(Inches(x_in), Inches(4.3),
545
+ Inches(6.0), Inches(2.7))
546
+ tf = box.text_frame; tf.word_wrap = True
547
+ for i, (abbr, defn) in enumerate(items):
548
+ p = tf.paragraphs[0] if i == 0 else tf.add_paragraph()
549
+ p.alignment = PP_ALIGN.LEFT
550
+ p.space_after = Pt(3)
551
+ r = p.add_run(); r.text = f"{abbr} "
552
+ set_run(r, size=12, bold=True, color=COLOR_NAVY)
553
+ r2 = p.add_run(); r2.text = defn
554
+ set_run(r2, size=11, color=COLOR_TEXT_SUB)
555
+
556
+ if page_brand:
557
+ pb = s.shapes.add_textbox(Inches(0.7), Inches(7.05), Inches(4.0), Inches(0.35))
558
+ p = pb.text_frame.paragraphs[0]
559
+ r = p.add_run(); r.text = page_brand
560
+ set_run(r, size=9, color=COLOR_MUTED, letter_space="300")
561
+
562
+ add_notes(s, notes)
563
+ return s
564
+
565
+
566
+ def add_closing_slide(prs: Presentation, *,
567
+ title: str = "Take-home messages",
568
+ bullets: Sequence[str] = (),
569
+ contact: str | None = None,
570
+ page_brand: str | None = None,
571
+ notes: str | None = None):
572
+ s = _blank(prs)
573
+
574
+ eye = s.shapes.add_textbox(Inches(0.7), Inches(0.32), Inches(8), Inches(0.4))
575
+ p = eye.text_frame.paragraphs[0]
576
+ r = p.add_run(); r.text = "CONCLUSION"
577
+ set_run(r, size=11, bold=True, color=COLOR_HIGHLIGHT, letter_space="400")
578
+
579
+ tb = s.shapes.add_textbox(Inches(0.7), Inches(0.75), Inches(12.0), Inches(0.9))
580
+ p = tb.text_frame.paragraphs[0]
581
+ r = p.add_run(); r.text = title
582
+ set_run(r, size=32, bold=True, color=COLOR_NAVY)
583
+
584
+ line = s.shapes.add_shape(MSO_SHAPE.RECTANGLE,
585
+ Inches(0.7), Inches(1.75), Inches(0.6), Emu(20000))
586
+ line.fill.solid(); line.fill.fore_color.rgb = COLOR_HIGHLIGHT
587
+ line.line.fill.background()
588
+
589
+ if bullets:
590
+ box = s.shapes.add_textbox(Inches(0.7), Inches(2.2), Inches(12.0), Inches(4.0))
591
+ tf = box.text_frame; tf.word_wrap = True
592
+ for i, raw in enumerate(bullets):
593
+ p = tf.paragraphs[0] if i == 0 else tf.add_paragraph()
594
+ p.alignment = PP_ALIGN.LEFT
595
+ p.space_after = Pt(14)
596
+ p.line_spacing = 1.3
597
+ r = p.add_run(); r.text = "▪ "
598
+ set_run(r, size=16, bold=True, color=COLOR_HIGHLIGHT)
599
+ add_styled(p, raw, size=22, color=COLOR_TEXT)
600
+
601
+ if contact:
602
+ cb = s.shapes.add_textbox(Inches(0.7), Inches(6.5), Inches(12.0), Inches(0.5))
603
+ p = cb.text_frame.paragraphs[0]; p.alignment = PP_ALIGN.LEFT
604
+ r = p.add_run(); r.text = contact
605
+ set_run(r, size=12, color=COLOR_TEXT_SUB)
606
+
607
+ if page_brand:
608
+ pb = s.shapes.add_textbox(Inches(0.7), Inches(7.05), Inches(4.0), Inches(0.35))
609
+ p = pb.text_frame.paragraphs[0]
610
+ r = p.add_run(); r.text = page_brand
611
+ set_run(r, size=9, color=COLOR_MUTED, letter_space="300")
612
+
613
+ add_notes(s, notes)
614
+ return s
615
+
616
+
617
+ # ============================================================================
618
+ # Mac PowerPoint compatibility — app.xml fix
619
+ # ============================================================================
620
+
621
+ def fix_app_xml(pptx_path: str | Path) -> None:
622
+ """Patch docProps/app.xml so Mac PowerPoint stops showing the repair dialog.
623
+
624
+ Run after Presentation.save(). Updates <Slides>, <Notes>, HeadingPairs counts,
625
+ and TitlesOfParts vector. See ~/.claude/rules/pptx-mac-compatibility.md §5.
626
+ """
627
+ pptx_path = Path(pptx_path)
628
+ prs = Presentation(pptx_path)
629
+ n_slides = len(prs.slides)
630
+ with zipfile.ZipFile(pptx_path, "r") as z:
631
+ n_notes = sum(
632
+ 1 for x in z.namelist()
633
+ if x.startswith("ppt/notesSlides/notesSlide") and x.endswith(".xml")
634
+ )
635
+ titles: list[str] = []
636
+ for slide in prs.slides:
637
+ title = ""
638
+ for shape in slide.shapes:
639
+ if shape.has_text_frame and shape.text_frame.text.strip():
640
+ title = shape.text_frame.text.strip().split("\n")[0][:60]
641
+ break
642
+ titles.append(title or "Untitled")
643
+
644
+ esc = lambda t: t.replace("&", "&amp;").replace("<", "&lt;").replace(">", "&gt;")
645
+ title_items = "".join(f"<vt:lpstr>{esc(t)}</vt:lpstr>" for t in titles)
646
+ new_app_xml = (
647
+ '<?xml version="1.0" encoding="UTF-8" standalone="yes"?>'
648
+ '<Properties xmlns="http://schemas.openxmlformats.org/officeDocument/2006/extended-properties" '
649
+ 'xmlns:vt="http://schemas.openxmlformats.org/officeDocument/2006/docPropsVTypes">'
650
+ '<TotalTime>1</TotalTime><Words>0</Words>'
651
+ '<Application>Microsoft Macintosh PowerPoint</Application>'
652
+ '<PresentationFormat>Widescreen</PresentationFormat><Paragraphs>0</Paragraphs>'
653
+ f'<Slides>{n_slides}</Slides><Notes>{n_notes}</Notes>'
654
+ '<HiddenSlides>0</HiddenSlides><MMClips>0</MMClips><ScaleCrop>false</ScaleCrop>'
655
+ '<HeadingPairs><vt:vector size="4" baseType="variant">'
656
+ '<vt:variant><vt:lpstr>Theme</vt:lpstr></vt:variant>'
657
+ '<vt:variant><vt:i4>1</vt:i4></vt:variant>'
658
+ '<vt:variant><vt:lpstr>Slide Titles</vt:lpstr></vt:variant>'
659
+ f'<vt:variant><vt:i4>{n_slides}</vt:i4></vt:variant>'
660
+ '</vt:vector></HeadingPairs>'
661
+ f'<TitlesOfParts><vt:vector size="{n_slides + 1}" baseType="lpstr">'
662
+ f'<vt:lpstr>Office Theme</vt:lpstr>{title_items}'
663
+ '</vt:vector></TitlesOfParts>'
664
+ '<Manager></Manager><Company></Company><LinksUpToDate>false</LinksUpToDate>'
665
+ '<SharedDoc>false</SharedDoc><HyperlinkBase></HyperlinkBase>'
666
+ '<HyperlinksChanged>false</HyperlinksChanged><AppVersion>14.0000</AppVersion>'
667
+ '</Properties>'
668
+ )
669
+ tmp = pptx_path.with_suffix(".tmp.pptx")
670
+ with zipfile.ZipFile(pptx_path, "r") as zin, \
671
+ zipfile.ZipFile(tmp, "w", zipfile.ZIP_DEFLATED) as zout:
672
+ for item in zin.namelist():
673
+ zout.writestr(item, new_app_xml if item == "docProps/app.xml" else zin.read(item))
674
+ shutil.move(tmp, pptx_path)
675
+ print(f"app.xml patched: Slides={n_slides}, Notes={n_notes}")
676
+
677
+
678
+ __all__ = [
679
+ "new_presentation",
680
+ "add_title_slide", "add_toc_slide", "add_section_divider",
681
+ "add_transition_slide", "add_content_slide",
682
+ "add_glossary_slide", "add_closing_slide",
683
+ "set_run", "add_styled", "add_notes",
684
+ "fix_app_xml",
685
+ "COLOR_NAVY", "COLOR_HIGHLIGHT", "COLOR_TEXT", "COLOR_TEXT_SUB",
686
+ "COLOR_MUTED", "COLOR_HAIRLINE", "COLOR_WHITE", "COLOR_DIVIDER_BG",
687
+ "FONT_KR", "FONT_EN",
688
+ ]