medsci-skills 4.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +50 -0
- package/README.md +602 -0
- package/README_FIRST.md +27 -0
- package/bin/medsci-skills.js +159 -0
- package/installers/install-macos.command +19 -0
- package/installers/install-windows.cmd +26 -0
- package/installers/install-windows.ps1 +17 -0
- package/installers/install.py +218 -0
- package/metadata/skills_catalog.json +452 -0
- package/package.json +48 -0
- package/skills/academic-aio/SKILL.md +408 -0
- package/skills/academic-aio/references/case_studies/kjr_mllm_2025.md +82 -0
- package/skills/academic-aio/references/checklists/AIO_GENERAL.md +354 -0
- package/skills/academic-aio/references/journal_summarybox_templates.yaml +126 -0
- package/skills/academic-aio/references/oac_funding_checklist.yaml +129 -0
- package/skills/academic-aio/references/reporting_guideline_mapping.md +39 -0
- package/skills/academic-aio/references/schema_markup_templates/CodeRepository.jsonld +32 -0
- package/skills/academic-aio/references/schema_markup_templates/Dataset.jsonld +36 -0
- package/skills/academic-aio/references/schema_markup_templates/Person.jsonld +30 -0
- package/skills/academic-aio/references/schema_markup_templates/README.md +43 -0
- package/skills/academic-aio/references/schema_markup_templates/ScholarlyArticle.jsonld +55 -0
- package/skills/academic-aio/scripts/batch_metadata_audit.py +169 -0
- package/skills/academic-aio/scripts/validate_schema.py +118 -0
- package/skills/academic-aio/skill.yml +36 -0
- package/skills/academic-aio/templates/aio_audit_checklist.md.j2 +108 -0
- package/skills/add-journal/SKILL.md +482 -0
- package/skills/add-journal/skill.yml +33 -0
- package/skills/analyze-stats/SKILL.md +598 -0
- package/skills/analyze-stats/references/analysis_guides/missing_data.md +109 -0
- package/skills/analyze-stats/references/analysis_guides/nhis_icd10_mapping.md +247 -0
- package/skills/analyze-stats/references/analysis_guides/propensity_score.md +132 -0
- package/skills/analyze-stats/references/analysis_guides/regression.md +115 -0
- package/skills/analyze-stats/references/analysis_guides/repeated_measures.md +160 -0
- package/skills/analyze-stats/references/analysis_guides/survey_weighted.md +366 -0
- package/skills/analyze-stats/references/analysis_guides/test_selection.md +86 -0
- package/skills/analyze-stats/references/style/figure_style.mplstyle +69 -0
- package/skills/analyze-stats/references/style/theme_publication.R +147 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/ajr.yaml +51 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/european_radiology.yaml +55 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/jama.yaml +66 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/lancet.yaml +57 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/nejm.yaml +51 -0
- package/skills/analyze-stats/references/table-standards/journal-profiles/radiology.yaml +66 -0
- package/skills/analyze-stats/references/table-standards/table-standards.md +287 -0
- package/skills/analyze-stats/references/table-standards/table-types/diagnostic_accuracy.md +36 -0
- package/skills/analyze-stats/references/table-standards/table-types/meta_analysis.md +58 -0
- package/skills/analyze-stats/references/table-standards/table-types/model_comparison.md +36 -0
- package/skills/analyze-stats/references/table-standards/table-types/regression_results.md +50 -0
- package/skills/analyze-stats/references/table-standards/table-types/table1_demographics.md +51 -0
- package/skills/analyze-stats/references/table-standards/tool-comparison.md +79 -0
- package/skills/analyze-stats/references/templates/agreement_analysis.py +436 -0
- package/skills/analyze-stats/references/templates/dca_plot.R +237 -0
- package/skills/analyze-stats/references/templates/diagnostic_accuracy.py +401 -0
- package/skills/analyze-stats/references/templates/dta_meta_analysis.R +384 -0
- package/skills/analyze-stats/references/templates/forest_plot.py +412 -0
- package/skills/analyze-stats/references/templates/likert_summary.py +356 -0
- package/skills/analyze-stats/references/templates/meta_analysis.R +365 -0
- package/skills/analyze-stats/references/templates/propensity_score.py +478 -0
- package/skills/analyze-stats/references/templates/regression.py +425 -0
- package/skills/analyze-stats/references/templates/repeated_measures.py +434 -0
- package/skills/analyze-stats/references/templates/sample_size.R +382 -0
- package/skills/analyze-stats/references/templates/survey_weighted_analysis.py +411 -0
- package/skills/analyze-stats/references/templates/survival_analysis.py +325 -0
- package/skills/analyze-stats/references/templates/table1_demographics.py +287 -0
- package/skills/analyze-stats/scripts/check_generated_code.py +335 -0
- package/skills/analyze-stats/skill.yml +38 -0
- package/skills/analyze-stats/tests/fixtures/gen_bad.R +16 -0
- package/skills/analyze-stats/tests/fixtures/gen_bad.py +24 -0
- package/skills/analyze-stats/tests/fixtures/gen_clean.py +21 -0
- package/skills/analyze-stats/tests/test_generated_code.sh +59 -0
- package/skills/analyze-stats/tests/test_survival_template.sh +53 -0
- package/skills/author-strategy/SKILL.md +117 -0
- package/skills/author-strategy/analyze_patterns.py +303 -0
- package/skills/author-strategy/fetch_pubmed.py +374 -0
- package/skills/author-strategy/skill.yml +34 -0
- package/skills/batch-cohort/SKILL.md +223 -0
- package/skills/batch-cohort/references/base_template_knhanes.R +210 -0
- package/skills/batch-cohort/references/batch_template_generator.R +222 -0
- package/skills/batch-cohort/references/variable_coding_registry.md +136 -0
- package/skills/batch-cohort/skill.yml +35 -0
- package/skills/calc-sample-size/SKILL.md +491 -0
- package/skills/calc-sample-size/references/formulas.md +655 -0
- package/skills/calc-sample-size/references/observational_cohort.md +49 -0
- package/skills/calc-sample-size/skill.yml +51 -0
- package/skills/check-reporting/SKILL.md +534 -0
- package/skills/check-reporting/references/LICENSES.md +41 -0
- package/skills/check-reporting/references/checklists/AMSTAR2.md +54 -0
- package/skills/check-reporting/references/checklists/ARRIVE_2.md +234 -0
- package/skills/check-reporting/references/checklists/CARE.md +102 -0
- package/skills/check-reporting/references/checklists/CLAIM_2024.md +128 -0
- package/skills/check-reporting/references/checklists/CLEAR.md +113 -0
- package/skills/check-reporting/references/checklists/CONSORT.md +86 -0
- package/skills/check-reporting/references/checklists/COSMIN_RoB.md +136 -0
- package/skills/check-reporting/references/checklists/GRRAS.md +61 -0
- package/skills/check-reporting/references/checklists/MI_CLEAR_LLM.md +167 -0
- package/skills/check-reporting/references/checklists/MOOSE.md +85 -0
- package/skills/check-reporting/references/checklists/NOS.md +88 -0
- package/skills/check-reporting/references/checklists/PRISMA_2020.md +135 -0
- package/skills/check-reporting/references/checklists/PRISMA_DTA.md +36 -0
- package/skills/check-reporting/references/checklists/PRISMA_P.md +56 -0
- package/skills/check-reporting/references/checklists/PROBAST.md +75 -0
- package/skills/check-reporting/references/checklists/PROBAST_AI.md +130 -0
- package/skills/check-reporting/references/checklists/QUADAS2.md +77 -0
- package/skills/check-reporting/references/checklists/QUADAS_C.md +131 -0
- package/skills/check-reporting/references/checklists/ROBINS_E.md +179 -0
- package/skills/check-reporting/references/checklists/ROBINS_I.md +87 -0
- package/skills/check-reporting/references/checklists/ROBIS.md +114 -0
- package/skills/check-reporting/references/checklists/ROB_ME.md +126 -0
- package/skills/check-reporting/references/checklists/RoB2.md +79 -0
- package/skills/check-reporting/references/checklists/RoB_NMA.md +96 -0
- package/skills/check-reporting/references/checklists/SPIRIT.md +112 -0
- package/skills/check-reporting/references/checklists/SQUIRE_2.md +68 -0
- package/skills/check-reporting/references/checklists/STARD.md +129 -0
- package/skills/check-reporting/references/checklists/STARD_AI.md +211 -0
- package/skills/check-reporting/references/checklists/STROBE.md +80 -0
- package/skills/check-reporting/references/checklists/SWiM.md +33 -0
- package/skills/check-reporting/references/checklists/TRIPOD.md +157 -0
- package/skills/check-reporting/references/checklists/TRIPOD_AI.md +140 -0
- package/skills/check-reporting/references/step4c_registration_timing.md +93 -0
- package/skills/check-reporting/references/step4d_prisma_figure_audit.md +137 -0
- package/skills/check-reporting/scripts/check_checklist_exists.py +183 -0
- package/skills/check-reporting/scripts/check_checklist_version.py +168 -0
- package/skills/check-reporting/scripts/check_framework_naming.py +206 -0
- package/skills/check-reporting/scripts/check_prisma_figure.py +209 -0
- package/skills/check-reporting/scripts/prisma_cascade_check.py +274 -0
- package/skills/check-reporting/skill.yml +41 -0
- package/skills/check-reporting/tests/fixtures/framework_bad.md +8 -0
- package/skills/check-reporting/tests/fixtures/framework_clean.md +7 -0
- package/skills/check-reporting/tests/test_checklist_fail_fast.sh +77 -0
- package/skills/check-reporting/tests/test_checklist_version.sh +72 -0
- package/skills/check-reporting/tests/test_framework_naming.sh +45 -0
- package/skills/check-reporting/tests/test_prisma_cascade.sh +104 -0
- package/skills/clean-data/SKILL.md +180 -0
- package/skills/clean-data/references/cleaning_patterns.md +299 -0
- package/skills/clean-data/references/profiling_template.py +304 -0
- package/skills/clean-data/scripts/check_structural_zero.py +174 -0
- package/skills/clean-data/skill.yml +35 -0
- package/skills/clean-data/tests/fixtures/smoking.csv +8 -0
- package/skills/clean-data/tests/test_structural_zero.sh +49 -0
- package/skills/cross-national/SKILL.md +264 -0
- package/skills/cross-national/skill.yml +37 -0
- package/skills/define-variables/SKILL.md +146 -0
- package/skills/define-variables/references/common_definitions.md +190 -0
- package/skills/define-variables/skill.yml +34 -0
- package/skills/define-variables/templates/variable_operationalization.md +64 -0
- package/skills/deidentify/SKILL.md +203 -0
- package/skills/deidentify/deidentify.py +1224 -0
- package/skills/deidentify/locales/_template.json +45 -0
- package/skills/deidentify/locales/au.json +43 -0
- package/skills/deidentify/locales/ca.json +44 -0
- package/skills/deidentify/locales/cn.json +47 -0
- package/skills/deidentify/locales/de.json +48 -0
- package/skills/deidentify/locales/fr.json +48 -0
- package/skills/deidentify/locales/in.json +48 -0
- package/skills/deidentify/locales/jp.json +48 -0
- package/skills/deidentify/locales/kr.json +48 -0
- package/skills/deidentify/locales/uk.json +45 -0
- package/skills/deidentify/locales/us.json +43 -0
- package/skills/deidentify/references/date_shift_guide.md +82 -0
- package/skills/deidentify/references/hipaa_18_identifiers.md +48 -0
- package/skills/deidentify/references/korean_phi_patterns.md +135 -0
- package/skills/deidentify/skill.yml +43 -0
- package/skills/deidentify/tests/README.md +26 -0
- package/skills/deidentify/tests/test_clean.csv +16 -0
- package/skills/deidentify/tests/test_edge_cases.csv +11 -0
- package/skills/deidentify/tests/test_phi_korean.csv +11 -0
- package/skills/design-ai-benchmarking/SKILL.md +214 -0
- package/skills/design-ai-benchmarking/references/benchmark_export_schema.json +69 -0
- package/skills/design-ai-benchmarking/references/elicitation_rubric_template.md +37 -0
- package/skills/design-ai-benchmarking/skill.yml +38 -0
- package/skills/design-study/SKILL.md +298 -0
- package/skills/design-study/skill.yml +33 -0
- package/skills/fill-icmje-coi/SKILL.md +216 -0
- package/skills/fill-icmje-coi/scripts/fill_icmje_coi.py +140 -0
- package/skills/fill-icmje-coi/skill.yml +35 -0
- package/skills/fill-icmje-coi/templates/icmje_coi_seed_synthetic.docx +0 -0
- package/skills/fill-protocol/SKILL.md +248 -0
- package/skills/fill-protocol/examples/example_irb_template.yaml +53 -0
- package/skills/fill-protocol/references/best_practices.md +121 -0
- package/skills/fill-protocol/scripts/doc_to_docx.py +111 -0
- package/skills/fill-protocol/scripts/fill_form.py +611 -0
- package/skills/fill-protocol/scripts/inspect_template.py +61 -0
- package/skills/fill-protocol/setup.sh +162 -0
- package/skills/fill-protocol/skill.yml +37 -0
- package/skills/find-cohort-gap/SKILL.md +309 -0
- package/skills/find-cohort-gap/references/cohort_profile_template.md +93 -0
- package/skills/find-cohort-gap/references/onepager_template.md +84 -0
- package/skills/find-cohort-gap/references/pattern_scoring_rubric.md +169 -0
- package/skills/find-cohort-gap/references/saturation_query_templates.md +143 -0
- package/skills/find-cohort-gap/skill.yml +35 -0
- package/skills/find-journal/POLICY.md +87 -0
- package/skills/find-journal/SKILL.md +340 -0
- package/skills/find-journal/references/journal_profiles/AJNR.md +29 -0
- package/skills/find-journal/references/journal_profiles/AJR.md +30 -0
- package/skills/find-journal/references/journal_profiles/Abdominal_Radiology.md +30 -0
- package/skills/find-journal/references/journal_profiles/Academic_Radiology.md +30 -0
- package/skills/find-journal/references/journal_profiles/Annals_of_Internal_Medicine.md +33 -0
- package/skills/find-journal/references/journal_profiles/Artificial_Intelligence_in_Medicine.md +28 -0
- package/skills/find-journal/references/journal_profiles/BMC_Medicine.md +31 -0
- package/skills/find-journal/references/journal_profiles/British_Journal_of_Radiology.md +39 -0
- package/skills/find-journal/references/journal_profiles/CVIR.md +30 -0
- package/skills/find-journal/references/journal_profiles/Chest.md +39 -0
- package/skills/find-journal/references/journal_profiles/Clinical_Radiology.md +30 -0
- package/skills/find-journal/references/journal_profiles/Clinical_and_Molecular_Hepatology.md +32 -0
- package/skills/find-journal/references/journal_profiles/Diabetes_Metabolism_Journal.md +36 -0
- package/skills/find-journal/references/journal_profiles/Diagnostic_and_Interventional_Radiology.md +32 -0
- package/skills/find-journal/references/journal_profiles/Endocrinology_and_Metabolism.md +37 -0
- package/skills/find-journal/references/journal_profiles/European_Journal_of_Preventive_Cardiology.md +39 -0
- package/skills/find-journal/references/journal_profiles/European_Radiology.md +29 -0
- package/skills/find-journal/references/journal_profiles/Hepatology_Communications.md +40 -0
- package/skills/find-journal/references/journal_profiles/Hepatology_International.md +37 -0
- package/skills/find-journal/references/journal_profiles/IEEE_JBHI.md +28 -0
- package/skills/find-journal/references/journal_profiles/IEEE_TMI.md +28 -0
- package/skills/find-journal/references/journal_profiles/INSI.md +29 -0
- package/skills/find-journal/references/journal_profiles/Investigative_Radiology.md +25 -0
- package/skills/find-journal/references/journal_profiles/JACC_Advances.md +41 -0
- package/skills/find-journal/references/journal_profiles/JACC_Asia.md +30 -0
- package/skills/find-journal/references/journal_profiles/JACR.md +28 -0
- package/skills/find-journal/references/journal_profiles/JAMA.md +40 -0
- package/skills/find-journal/references/journal_profiles/JAMA_Network_Open.md +30 -0
- package/skills/find-journal/references/journal_profiles/JCSM.md +39 -0
- package/skills/find-journal/references/journal_profiles/JKMS.md +32 -0
- package/skills/find-journal/references/journal_profiles/JMIR.md +29 -0
- package/skills/find-journal/references/journal_profiles/JMIR_Medical_Education.md +29 -0
- package/skills/find-journal/references/journal_profiles/JNIS.md +35 -0
- package/skills/find-journal/references/journal_profiles/JVIR.md +31 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Biomedical_Informatics.md +29 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Clinical_Endocrinology_and_Metabolism.md +40 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Magnetic_Resonance_Imaging.md +30 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Nuclear_Medicine.md +31 -0
- package/skills/find-journal/references/journal_profiles/Journal_of_Stroke.md +32 -0
- package/skills/find-journal/references/journal_profiles/KJR.md +38 -0
- package/skills/find-journal/references/journal_profiles/Korean_Circulation_Journal.md +38 -0
- package/skills/find-journal/references/journal_profiles/Korean_Journal_of_Internal_Medicine.md +36 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Diabetes_and_Endocrinology.md +40 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Gastroenterology_and_Hepatology.md +49 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Infectious_Diseases.md +38 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Neurology.md +39 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Oncology.md +40 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Psychiatry.md +38 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Public_Health.md +30 -0
- package/skills/find-journal/references/journal_profiles/Lancet_Respiratory_Medicine.md +39 -0
- package/skills/find-journal/references/journal_profiles/Liver_International.md +33 -0
- package/skills/find-journal/references/journal_profiles/Medical_Image_Analysis.md +28 -0
- package/skills/find-journal/references/journal_profiles/NEJM.md +33 -0
- package/skills/find-journal/references/journal_profiles/Nature_Machine_Intelligence.md +31 -0
- package/skills/find-journal/references/journal_profiles/Nature_Medicine.md +39 -0
- package/skills/find-journal/references/journal_profiles/Neuroradiology.md +31 -0
- package/skills/find-journal/references/journal_profiles/Nutrition_Metabolism_and_Cardiovascular_Diseases.md +39 -0
- package/skills/find-journal/references/journal_profiles/PLOS_Medicine.md +32 -0
- package/skills/find-journal/references/journal_profiles/RYAI.md +28 -0
- package/skills/find-journal/references/journal_profiles/Radiology.md +29 -0
- package/skills/find-journal/references/journal_profiles/Skeletal_Radiology.md +31 -0
- package/skills/find-journal/references/journal_profiles/Stroke.md +37 -0
- package/skills/find-journal/references/journal_profiles/The_BMJ.md +31 -0
- package/skills/find-journal/references/journal_profiles/The_Lancet.md +31 -0
- package/skills/find-journal/references/journal_profiles/The_Lancet_Digital_Health.md +29 -0
- package/skills/find-journal/references/journal_profiles/World_Journal_of_Hepatology.md +53 -0
- package/skills/find-journal/references/journal_profiles/npj_Digital_Medicine.md +29 -0
- package/skills/find-journal/skill.yml +34 -0
- package/skills/fulltext-retrieval/SKILL.md +174 -0
- package/skills/fulltext-retrieval/fetch_oa.py +433 -0
- package/skills/fulltext-retrieval/pdf_to_md.py +160 -0
- package/skills/fulltext-retrieval/skill.yml +41 -0
- package/skills/generate-codebook/SKILL.md +155 -0
- package/skills/generate-codebook/references/codebook_schema.md +76 -0
- package/skills/generate-codebook/scripts/generate_codebook.py +278 -0
- package/skills/generate-codebook/skill.yml +35 -0
- package/skills/generate-codebook/tests/test_generate_codebook.sh +76 -0
- package/skills/grant-builder/SKILL.md +251 -0
- package/skills/grant-builder/skill.yml +34 -0
- package/skills/humanize/SKILL.md +251 -0
- package/skills/humanize/references/ai_patterns.md +571 -0
- package/skills/humanize/skill.yml +33 -0
- package/skills/intake-project/SKILL.md +264 -0
- package/skills/intake-project/skill.yml +34 -0
- package/skills/lit-sync/SKILL.md +448 -0
- package/skills/lit-sync/references/locale/ko/note_templates.md +110 -0
- package/skills/lit-sync/skill.yml +52 -0
- package/skills/lit-sync/tests/test_poll_logic.sh +92 -0
- package/skills/ma-scout/SKILL.md +640 -0
- package/skills/ma-scout/references/project_readme_template.md +95 -0
- package/skills/ma-scout/references/project_readme_template_ko.md +82 -0
- package/skills/ma-scout/skill.yml +33 -0
- package/skills/make-figures/SKILL.md +957 -0
- package/skills/make-figures/references/critic_rubrics/data_plot.md +166 -0
- package/skills/make-figures/references/critic_rubrics/flow_diagram.md +169 -0
- package/skills/make-figures/references/design_principles.md +181 -0
- package/skills/make-figures/references/exemplar_diagrams/README.md +65 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/README.md +15 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/template_input.yaml +37 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/template_output.pdf +0 -0
- package/skills/make-figures/references/exemplar_diagrams/consort/template_output.png +0 -0
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- package/skills/self-review/tests/test_panel_diversity.sh +55 -0
- package/skills/self-review/tests/test_panel_mode.sh +69 -0
- package/skills/self-review/tests/test_reference_adequacy.sh +68 -0
- package/skills/self-review/tests/test_reviewer_team_consistency.sh +138 -0
- package/skills/self-review/tests/test_scope_coherence.sh +46 -0
- package/skills/setup-medsci/SKILL.md +110 -0
- package/skills/setup-medsci/references/setup-checklist.md +51 -0
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- package/skills/sync-submission/scripts/blind_sweep.py +203 -0
- package/skills/sync-submission/scripts/check_asset_anonymization.py +300 -0
- package/skills/sync-submission/scripts/check_cross_artifact_stale.py +211 -0
- package/skills/sync-submission/scripts/cover_letter_drift_check.py +451 -0
- package/skills/sync-submission/scripts/cross_document_n_check.py +486 -0
- package/skills/sync-submission/scripts/detect_copy_divergence.py +136 -0
- package/skills/sync-submission/scripts/preflight_gate.py +458 -0
- package/skills/sync-submission/scripts/scope_drift_check.py +362 -0
- package/skills/sync-submission/scripts/sync_submission.py +169 -0
- package/skills/sync-submission/skill.yml +43 -0
- package/skills/sync-submission/tests/fixtures/copy_ok.md +5 -0
- package/skills/sync-submission/tests/fixtures/copy_stale.md +5 -0
- package/skills/sync-submission/tests/fixtures/ssot.md +5 -0
- package/skills/sync-submission/tests/test_asset_anonymization.sh +99 -0
- package/skills/sync-submission/tests/test_copy_divergence.sh +44 -0
- package/skills/sync-submission/tests/test_cross_artifact_stale.sh +80 -0
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- package/skills/sync-submission/tests/test_scope_drift.sh +122 -0
- package/skills/sync-submission/tests/test_vN_docx_assertion.sh +51 -0
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- package/skills/verify-refs/references/manual_checkpoint_guide.md +100 -0
- package/skills/verify-refs/scripts/verify_cli.sh +62 -0
- package/skills/verify-refs/scripts/verify_refs.py +782 -0
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- package/skills/verify-refs/tests/fixtures/pagination_placeholder.bib +17 -0
- package/skills/verify-refs/tests/test_pagination_placeholder.sh +42 -0
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#!/usr/bin/env python3
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"""Fill a Korean Word form template while preserving styles, tables, fonts, and page layout.
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Core principles (DO NOT BREAK):
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3. Apply cantSplit to every row that gets filled (prevents page-break-mid-row).
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4. Set Korean font with eastAsia attribute (run.font.name alone fails for Korean).
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5. Validate: report empty cells and paragraphs that didn't match.
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"""
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import argparse
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import re
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import sys
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from dataclasses import dataclass, field
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from typing import Iterable
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import yaml
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from docx import Document
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from docx.oxml.ns import qn
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from docx.shared import Pt
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# ---------- Style preservation helpers ----------
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"""Set font for a run including eastAsia attribute (mandatory for Hangul)."""
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rFonts = rPr.find(qn("w:rFonts"))
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if rFonts is None:
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rFonts = OxmlElement("w:rFonts")
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for attr in ("w:ascii", "w:hAnsi", "w:cs", "w:eastAsia"):
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def _apply_cant_split(row) -> None:
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"""Mark row to never split across pages."""
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the document's apparent line spacing.
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"""
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spacing = OxmlElement("w:spacing")
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pPr.append(spacing)
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"""Replace the entire text content of a paragraph while keeping its style.
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Strategy: keep the first run's properties as the template style. Remove all
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content, split on \n and use w:br between lines (within same run-style block).
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"""
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br = OxmlElement("w:br")
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if line:
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# Reapply Korean font to the new run
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def _replace_cell_text(cell: _Cell, new_text: str,
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"""Replace a cell's text content. Use the first paragraph as template."""
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return
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# Replace first paragraph, then remove the rest
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template_para = cell.paragraphs[0]
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# If the new content has multiple lines, we replace first paragraph
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lines = new_text.split("\n")
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_replace_paragraph_text_keep_style(template_para, lines[0],
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korean_font=korean_font)
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# Remove all paragraphs after the first
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if len(lines) > 1:
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from copy import deepcopy
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first_p = cell._tc.find(qn("w:p"))
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first_rPr = None
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if first_r is not None:
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first_rPr = first_r.find(qn("w:rPr"))
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for line in lines[1:]:
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if first_pPr is not None:
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new_p.append(deepcopy(first_pPr))
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new_r = OxmlElement("w:r")
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if first_rPr is not None:
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new_r.append(deepcopy(first_rPr))
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176
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+
# ---------- FormFiller class ----------
|
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177
|
+
|
|
178
|
+
@dataclass
|
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179
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+
class FillResult:
|
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180
|
+
matched: list[str] = field(default_factory=list)
|
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181
|
+
unmatched: list[str] = field(default_factory=list)
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182
|
+
|
|
183
|
+
|
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184
|
+
class FormFiller:
|
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185
|
+
def __init__(self, template_path: str | Path,
|
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186
|
+
korean_font: str = DEFAULT_KOREAN_FONT,
|
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187
|
+
blank_between_paragraphs: bool = True,
|
|
188
|
+
blank_around_section_header: bool = True,
|
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189
|
+
blank_around_all_section_headers: bool = False,
|
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190
|
+
normalize_page_breaks: bool = True):
|
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|
+
self.path = Path(template_path).expanduser().resolve()
|
|
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|
+
if not self.path.exists():
|
|
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|
+
raise FileNotFoundError(self.path)
|
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|
+
self.doc = Document(str(self.path))
|
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|
+
self.korean_font = korean_font
|
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|
+
self.blank_between_paragraphs = blank_between_paragraphs
|
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197
|
+
self.blank_around_section_header = blank_around_section_header
|
|
198
|
+
self.blank_around_all_section_headers = blank_around_all_section_headers
|
|
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|
+
self.normalize_page_breaks_flag = normalize_page_breaks
|
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200
|
+
self._filled_rows: set[int] = set()
|
|
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|
+
self._table_results = FillResult()
|
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|
+
self._paragraph_results = FillResult()
|
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203
|
+
|
|
204
|
+
# ---- Table cell filling ----
|
|
205
|
+
|
|
206
|
+
def _cell_text(self, cell: _Cell) -> str:
|
|
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|
+
return "\n".join(p.text for p in cell.paragraphs).strip()
|
|
208
|
+
|
|
209
|
+
def _label_match(self, cell_text: str, label: str) -> bool:
|
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|
+
# Normalize whitespace and newlines
|
|
211
|
+
norm_cell = re.sub(r"\s+", "", cell_text)
|
|
212
|
+
norm_label = re.sub(r"\s+", "", label)
|
|
213
|
+
return norm_cell == norm_label
|
|
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|
+
|
|
215
|
+
def fill_table_kv(self, label: str, value: str) -> bool:
|
|
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|
+
"""Find a cell whose text == label, fill the next cell on the right.
|
|
217
|
+
|
|
218
|
+
Returns True if filled, False otherwise.
|
|
219
|
+
Skips merged duplicate cells (same _tc reference).
|
|
220
|
+
"""
|
|
221
|
+
for table in self.doc.tables:
|
|
222
|
+
for row_idx, row in enumerate(table.rows):
|
|
223
|
+
# Track unique cells in this row (skip merged duplicates)
|
|
224
|
+
seen_tcs: set[int] = set()
|
|
225
|
+
cells_in_row: list[_Cell] = []
|
|
226
|
+
for c in row.cells:
|
|
227
|
+
if id(c._tc) not in seen_tcs:
|
|
228
|
+
seen_tcs.add(id(c._tc))
|
|
229
|
+
cells_in_row.append(c)
|
|
230
|
+
|
|
231
|
+
for ci, cell in enumerate(cells_in_row):
|
|
232
|
+
if self._label_match(self._cell_text(cell), label):
|
|
233
|
+
# Found label cell. Fill the next cell on the right.
|
|
234
|
+
if ci + 1 < len(cells_in_row):
|
|
235
|
+
target = cells_in_row[ci + 1]
|
|
236
|
+
_replace_cell_text(target, value,
|
|
237
|
+
korean_font=self.korean_font)
|
|
238
|
+
_apply_cant_split(row)
|
|
239
|
+
self._table_results.matched.append(label)
|
|
240
|
+
return True
|
|
241
|
+
self._table_results.unmatched.append(label)
|
|
242
|
+
return False
|
|
243
|
+
|
|
244
|
+
# ---- Paragraph (section) filling ----
|
|
245
|
+
|
|
246
|
+
def replace_paragraphs_after(self, header_text: str, new_content: str,
|
|
247
|
+
stop_pattern: str | None = None) -> bool:
|
|
248
|
+
"""Find a paragraph matching header_text, then replace all paragraphs
|
|
249
|
+
between this header and the next section header (or stop_pattern) with
|
|
250
|
+
new_content.
|
|
251
|
+
|
|
252
|
+
new_content is split by \n\n into separate paragraphs (preserving the
|
|
253
|
+
style of the first replaced paragraph).
|
|
254
|
+
"""
|
|
255
|
+
body = self.doc.element.body
|
|
256
|
+
all_ps = list(self.doc.paragraphs)
|
|
257
|
+
|
|
258
|
+
# Find header paragraph
|
|
259
|
+
header_idx = None
|
|
260
|
+
for i, p in enumerate(all_ps):
|
|
261
|
+
if self._label_match(p.text, header_text):
|
|
262
|
+
header_idx = i
|
|
263
|
+
break
|
|
264
|
+
|
|
265
|
+
if header_idx is None:
|
|
266
|
+
self._paragraph_results.unmatched.append(header_text)
|
|
267
|
+
return False
|
|
268
|
+
|
|
269
|
+
# Determine end paragraph (next numbered section header or stop_pattern)
|
|
270
|
+
if stop_pattern:
|
|
271
|
+
end_re = re.compile(stop_pattern)
|
|
272
|
+
else:
|
|
273
|
+
# Match patterns like "1. ", "2. ", ... "18. "
|
|
274
|
+
end_re = re.compile(r"^\s*\d+\.\s+\S")
|
|
275
|
+
|
|
276
|
+
end_idx = len(all_ps)
|
|
277
|
+
for i in range(header_idx + 1, len(all_ps)):
|
|
278
|
+
if end_re.match(all_ps[i].text):
|
|
279
|
+
end_idx = i
|
|
280
|
+
break
|
|
281
|
+
|
|
282
|
+
# Paragraphs to replace: header_idx+1 .. end_idx-1
|
|
283
|
+
# Strategy: replace first paragraph in range, remove rest, add new paragraphs
|
|
284
|
+
if header_idx + 1 >= end_idx:
|
|
285
|
+
# No paragraphs between header and next section — just insert
|
|
286
|
+
from copy import deepcopy
|
|
287
|
+
template_p = all_ps[header_idx]._element
|
|
288
|
+
template_pPr = template_p.find(qn("w:pPr"))
|
|
289
|
+
template_r = template_p.find(qn("w:r"))
|
|
290
|
+
template_rPr = template_r.find(qn("w:rPr")) if template_r is not None else None
|
|
291
|
+
|
|
292
|
+
insert_after = template_p
|
|
293
|
+
# Blank line right after section header
|
|
294
|
+
if self.blank_around_section_header:
|
|
295
|
+
blank_p = _make_blank_paragraph()
|
|
296
|
+
insert_after.addnext(blank_p)
|
|
297
|
+
insert_after = blank_p
|
|
298
|
+
chunks = new_content.split("\n\n")
|
|
299
|
+
for ci, chunk in enumerate(chunks):
|
|
300
|
+
if ci > 0 and self.blank_between_paragraphs:
|
|
301
|
+
blank_p = _make_blank_paragraph()
|
|
302
|
+
insert_after.addnext(blank_p)
|
|
303
|
+
insert_after = blank_p
|
|
304
|
+
new_p = OxmlElement("w:p")
|
|
305
|
+
# New paragraph should NOT have header style — use default (no pPr)
|
|
306
|
+
new_r = OxmlElement("w:r")
|
|
307
|
+
t = OxmlElement("w:t")
|
|
308
|
+
t.text = chunk
|
|
309
|
+
t.set(qn("xml:space"), "preserve")
|
|
310
|
+
new_r.append(t)
|
|
311
|
+
new_p.append(new_r)
|
|
312
|
+
insert_after.addnext(new_p)
|
|
313
|
+
# Apply Korean font
|
|
314
|
+
from docx.text.run import Run
|
|
315
|
+
_set_run_korean_font(Run(new_r, None), self.korean_font)
|
|
316
|
+
insert_after = new_p
|
|
317
|
+
# Blank line right before next section header
|
|
318
|
+
if self.blank_around_section_header:
|
|
319
|
+
blank_p = _make_blank_paragraph()
|
|
320
|
+
insert_after.addnext(blank_p)
|
|
321
|
+
self._paragraph_results.matched.append(header_text)
|
|
322
|
+
return True
|
|
323
|
+
|
|
324
|
+
# Replace first paragraph in range
|
|
325
|
+
first_target = all_ps[header_idx + 1]
|
|
326
|
+
chunks = new_content.split("\n\n")
|
|
327
|
+
_replace_paragraph_text_keep_style(first_target, chunks[0],
|
|
328
|
+
korean_font=self.korean_font)
|
|
329
|
+
|
|
330
|
+
# Remove all paragraphs after first_target up to end_idx
|
|
331
|
+
for i in range(header_idx + 2, end_idx):
|
|
332
|
+
p_elem = all_ps[i]._element
|
|
333
|
+
p_elem.getparent().remove(p_elem)
|
|
334
|
+
|
|
335
|
+
# Insert blank paragraph right after section header (before first body)
|
|
336
|
+
first_target_elem = first_target._element
|
|
337
|
+
if self.blank_around_section_header:
|
|
338
|
+
blank_p = _make_blank_paragraph()
|
|
339
|
+
first_target_elem.addprevious(blank_p)
|
|
340
|
+
|
|
341
|
+
# Add additional chunks as new paragraphs after first_target
|
|
342
|
+
from copy import deepcopy
|
|
343
|
+
first_pPr = first_target_elem.find(qn("w:pPr"))
|
|
344
|
+
first_r = first_target_elem.find(qn("w:r"))
|
|
345
|
+
first_rPr = first_r.find(qn("w:rPr")) if first_r is not None else None
|
|
346
|
+
|
|
347
|
+
insert_after = first_target_elem
|
|
348
|
+
for chunk in chunks[1:]:
|
|
349
|
+
if self.blank_between_paragraphs:
|
|
350
|
+
blank_p = _make_blank_paragraph()
|
|
351
|
+
insert_after.addnext(blank_p)
|
|
352
|
+
insert_after = blank_p
|
|
353
|
+
new_p = OxmlElement("w:p")
|
|
354
|
+
if first_pPr is not None:
|
|
355
|
+
new_p.append(deepcopy(first_pPr))
|
|
356
|
+
new_r = OxmlElement("w:r")
|
|
357
|
+
if first_rPr is not None:
|
|
358
|
+
new_r.append(deepcopy(first_rPr))
|
|
359
|
+
t = OxmlElement("w:t")
|
|
360
|
+
t.text = chunk
|
|
361
|
+
t.set(qn("xml:space"), "preserve")
|
|
362
|
+
new_r.append(t)
|
|
363
|
+
new_p.append(new_r)
|
|
364
|
+
insert_after.addnext(new_p)
|
|
365
|
+
from docx.text.run import Run
|
|
366
|
+
_set_run_korean_font(Run(new_r, None), self.korean_font)
|
|
367
|
+
insert_after = new_p
|
|
368
|
+
|
|
369
|
+
# Blank line right before next section header
|
|
370
|
+
if self.blank_around_section_header:
|
|
371
|
+
blank_p = _make_blank_paragraph()
|
|
372
|
+
insert_after.addnext(blank_p)
|
|
373
|
+
|
|
374
|
+
self._paragraph_results.matched.append(header_text)
|
|
375
|
+
return True
|
|
376
|
+
|
|
377
|
+
# ---- Single-paragraph in-place text replace ----
|
|
378
|
+
|
|
379
|
+
def replace_paragraph_matching(self, matcher: str, new_text: str,
|
|
380
|
+
mode: str = "startswith") -> bool:
|
|
381
|
+
"""Replace the entire text of the first paragraph that matches.
|
|
382
|
+
|
|
383
|
+
mode: 'startswith' | 'contains' | 'exact'
|
|
384
|
+
Preserves the paragraph's pPr and the first run's rPr (style).
|
|
385
|
+
"""
|
|
386
|
+
for p in self.doc.paragraphs:
|
|
387
|
+
text = p.text
|
|
388
|
+
ok = False
|
|
389
|
+
if mode == "startswith":
|
|
390
|
+
ok = text.startswith(matcher)
|
|
391
|
+
elif mode == "contains":
|
|
392
|
+
ok = matcher in text
|
|
393
|
+
elif mode == "exact":
|
|
394
|
+
ok = text.strip() == matcher.strip()
|
|
395
|
+
if ok:
|
|
396
|
+
_replace_paragraph_text_keep_style(p, new_text,
|
|
397
|
+
korean_font=self.korean_font)
|
|
398
|
+
self._paragraph_results.matched.append(f"<para>{matcher}")
|
|
399
|
+
return True
|
|
400
|
+
self._paragraph_results.unmatched.append(f"<para>{matcher}")
|
|
401
|
+
return False
|
|
402
|
+
|
|
403
|
+
# ---- Document-wide passes ----
|
|
404
|
+
|
|
405
|
+
def apply_blank_around_all_section_headers(self) -> int:
|
|
406
|
+
"""Scan all top-level paragraphs and add blank lines above and below
|
|
407
|
+
every numbered section header (e.g. '1. ', '12. ').
|
|
408
|
+
|
|
409
|
+
OPT-IN ONLY. Use this when the institutional review will tolerate
|
|
410
|
+
layout drift (page count change). For strict form-fidelity submissions,
|
|
411
|
+
leave disabled (default) and rely on per-section blanks added during
|
|
412
|
+
replace_paragraphs_after().
|
|
413
|
+
|
|
414
|
+
Skips:
|
|
415
|
+
- Headers whose previous sibling is already an empty paragraph
|
|
416
|
+
(avoids double-blanks when section was filled via section_replace)
|
|
417
|
+
- Headers whose next sibling is already an empty paragraph
|
|
418
|
+
- Paragraphs inside tables (only top-level body paragraphs scanned)
|
|
419
|
+
|
|
420
|
+
Returns the number of blank paragraphs inserted.
|
|
421
|
+
"""
|
|
422
|
+
header_re = re.compile(r"^\s*\d+\.\s+\S")
|
|
423
|
+
body = self.doc.element.body
|
|
424
|
+
# Collect all top-level <w:p> elements (skip those inside <w:tbl>)
|
|
425
|
+
all_top_ps = [el for el in body if el.tag == qn("w:p")]
|
|
426
|
+
inserted = 0
|
|
427
|
+
|
|
428
|
+
def is_blank(p_elem) -> bool:
|
|
429
|
+
if p_elem is None or p_elem.tag != qn("w:p"):
|
|
430
|
+
return False
|
|
431
|
+
# Empty if no <w:t> with text content
|
|
432
|
+
for t in p_elem.iter(qn("w:t")):
|
|
433
|
+
if t.text and t.text.strip():
|
|
434
|
+
return False
|
|
435
|
+
return True
|
|
436
|
+
|
|
437
|
+
def text_of(p_elem) -> str:
|
|
438
|
+
return "".join(t.text or "" for t in p_elem.iter(qn("w:t")))
|
|
439
|
+
|
|
440
|
+
for p_elem in all_top_ps:
|
|
441
|
+
text = text_of(p_elem)
|
|
442
|
+
if not header_re.match(text):
|
|
443
|
+
continue
|
|
444
|
+
prev = p_elem.getprevious()
|
|
445
|
+
nxt = p_elem.getnext()
|
|
446
|
+
if not is_blank(prev):
|
|
447
|
+
p_elem.addprevious(_make_blank_paragraph())
|
|
448
|
+
inserted += 1
|
|
449
|
+
if not is_blank(nxt):
|
|
450
|
+
p_elem.addnext(_make_blank_paragraph())
|
|
451
|
+
inserted += 1
|
|
452
|
+
return inserted
|
|
453
|
+
|
|
454
|
+
# ---- Validation & save ----
|
|
455
|
+
|
|
456
|
+
def validate(self) -> list[str]:
|
|
457
|
+
warnings: list[str] = []
|
|
458
|
+
for label in self._table_results.unmatched:
|
|
459
|
+
warnings.append(f"[TABLE-MISS] Label not found: {label!r}")
|
|
460
|
+
for header in self._paragraph_results.unmatched:
|
|
461
|
+
warnings.append(f"[SECTION-MISS] Header not found: {header!r}")
|
|
462
|
+
return warnings
|
|
463
|
+
|
|
464
|
+
def report(self) -> str:
|
|
465
|
+
n_table_ok = len(self._table_results.matched)
|
|
466
|
+
n_table_miss = len(self._table_results.unmatched)
|
|
467
|
+
n_para_ok = len(self._paragraph_results.matched)
|
|
468
|
+
n_para_miss = len(self._paragraph_results.unmatched)
|
|
469
|
+
return (
|
|
470
|
+
f"Filled {n_table_ok} table cells, {n_para_ok} sections.\n"
|
|
471
|
+
f"Missed: {n_table_miss} cells, {n_para_miss} sections."
|
|
472
|
+
)
|
|
473
|
+
|
|
474
|
+
def normalize_page_breaks(self) -> int:
|
|
475
|
+
"""Remove dangling empty paragraphs whose sole content is a page break,
|
|
476
|
+
and transfer the break to the next content paragraph via pageBreakBefore.
|
|
477
|
+
|
|
478
|
+
Why: templates often place `<w:p><w:r><w:br w:type="page"/></w:r></w:p>`
|
|
479
|
+
after a table or section header to force the next block onto a new page.
|
|
480
|
+
When the preceding content's height varies (e.g. an abstract table grows
|
|
481
|
+
with content), the empty paragraph can spill onto a page by itself and
|
|
482
|
+
the page break then forces the next block one more page forward —
|
|
483
|
+
producing a visibly blank page.
|
|
484
|
+
|
|
485
|
+
Replacing this pattern with `<w:pageBreakBefore/>` on the next content
|
|
486
|
+
paragraph's `pPr` preserves the "start on a new page" intent regardless
|
|
487
|
+
of where the preceding content ends, eliminating the blank page.
|
|
488
|
+
|
|
489
|
+
Returns the number of paragraphs normalized.
|
|
490
|
+
"""
|
|
491
|
+
from copy import deepcopy # noqa: F401 (kept for parity with other helpers)
|
|
492
|
+
|
|
493
|
+
body = self.doc.element.body
|
|
494
|
+
children = list(body)
|
|
495
|
+
fixed = 0
|
|
496
|
+
|
|
497
|
+
for i, el in enumerate(children):
|
|
498
|
+
if not el.tag.endswith("}p"):
|
|
499
|
+
continue
|
|
500
|
+
# Only collapse paragraphs with NO real text, containing a page break
|
|
501
|
+
text = "".join((t.text or "") for t in el.iter(qn("w:t")))
|
|
502
|
+
if text.strip():
|
|
503
|
+
continue
|
|
504
|
+
page_brs = [b for b in el.iter(qn("w:br"))
|
|
505
|
+
if b.get(qn("w:type")) == "page"]
|
|
506
|
+
if not page_brs:
|
|
507
|
+
continue
|
|
508
|
+
# Find the next sibling content paragraph (non-empty p or table)
|
|
509
|
+
target = None
|
|
510
|
+
for j in range(i + 1, len(children)):
|
|
511
|
+
sib = children[j]
|
|
512
|
+
if sib.tag.endswith("}p"):
|
|
513
|
+
sib_text = "".join((t.text or "") for t in sib.iter(qn("w:t")))
|
|
514
|
+
if sib_text.strip():
|
|
515
|
+
target = sib
|
|
516
|
+
break
|
|
517
|
+
elif sib.tag.endswith("}tbl"):
|
|
518
|
+
# A table has no pPr; leave the break alone.
|
|
519
|
+
target = None
|
|
520
|
+
break
|
|
521
|
+
if target is None:
|
|
522
|
+
continue
|
|
523
|
+
# Attach pageBreakBefore to target's pPr (idempotent)
|
|
524
|
+
pPr = target.find(qn("w:pPr"))
|
|
525
|
+
if pPr is None:
|
|
526
|
+
pPr = OxmlElement("w:pPr")
|
|
527
|
+
target.insert(0, pPr)
|
|
528
|
+
if pPr.find(qn("w:pageBreakBefore")) is None:
|
|
529
|
+
pbb = OxmlElement("w:pageBreakBefore")
|
|
530
|
+
pPr.insert(0, pbb)
|
|
531
|
+
# Remove the dangling empty paragraph
|
|
532
|
+
el.getparent().remove(el)
|
|
533
|
+
fixed += 1
|
|
534
|
+
|
|
535
|
+
return fixed
|
|
536
|
+
|
|
537
|
+
def save(self, output_path: str | Path) -> Path:
|
|
538
|
+
if self.normalize_page_breaks_flag:
|
|
539
|
+
self.normalize_page_breaks()
|
|
540
|
+
out = Path(output_path).expanduser().resolve()
|
|
541
|
+
out.parent.mkdir(parents=True, exist_ok=True)
|
|
542
|
+
self.doc.save(str(out))
|
|
543
|
+
return out
|
|
544
|
+
|
|
545
|
+
|
|
546
|
+
# ---------- CLI ----------
|
|
547
|
+
|
|
548
|
+
def fill_from_yaml(template: Path, content_yaml: Path, output: Path) -> None:
|
|
549
|
+
with open(content_yaml, "r", encoding="utf-8") as f:
|
|
550
|
+
cfg = yaml.safe_load(f)
|
|
551
|
+
|
|
552
|
+
protections = cfg.get("protections", {}) or {}
|
|
553
|
+
korean_font = protections.get("korean_font", DEFAULT_KOREAN_FONT)
|
|
554
|
+
blank_between = protections.get("blank_between_paragraphs", True)
|
|
555
|
+
blank_around = protections.get("blank_around_section_header", True)
|
|
556
|
+
blank_around_all = protections.get("blank_around_all_section_headers", False)
|
|
557
|
+
normalize_pb = protections.get("normalize_page_breaks", True)
|
|
558
|
+
filler = FormFiller(template, korean_font=korean_font,
|
|
559
|
+
blank_between_paragraphs=blank_between,
|
|
560
|
+
blank_around_section_header=blank_around,
|
|
561
|
+
blank_around_all_section_headers=blank_around_all,
|
|
562
|
+
normalize_page_breaks=normalize_pb)
|
|
563
|
+
|
|
564
|
+
# Fill table key-value pairs
|
|
565
|
+
for label, value in (cfg.get("table_kv") or {}).items():
|
|
566
|
+
ok = filler.fill_table_kv(str(label), str(value))
|
|
567
|
+
status = "OK " if ok else "MISS"
|
|
568
|
+
print(f" [{status}] table_kv: {label!r}")
|
|
569
|
+
|
|
570
|
+
# Replace section content (between headers)
|
|
571
|
+
for header, content in (cfg.get("section_replace") or {}).items():
|
|
572
|
+
ok = filler.replace_paragraphs_after(str(header), str(content))
|
|
573
|
+
status = "OK " if ok else "MISS"
|
|
574
|
+
print(f" [{status}] section: {header!r}")
|
|
575
|
+
|
|
576
|
+
# Replace single paragraph in-place (e.g., title line)
|
|
577
|
+
for matcher, content in (cfg.get("paragraph_replace") or {}).items():
|
|
578
|
+
ok = filler.replace_paragraph_matching(str(matcher), str(content),
|
|
579
|
+
mode="startswith")
|
|
580
|
+
status = "OK " if ok else "MISS"
|
|
581
|
+
print(f" [{status}] paragraph: {matcher!r}")
|
|
582
|
+
|
|
583
|
+
# Document-wide pass: blank lines around ALL numbered section headers
|
|
584
|
+
if blank_around_all:
|
|
585
|
+
n = filler.apply_blank_around_all_section_headers()
|
|
586
|
+
print(f" [OK ] blank lines around all numbered headers: {n} inserted")
|
|
587
|
+
|
|
588
|
+
print()
|
|
589
|
+
print(filler.report())
|
|
590
|
+
print()
|
|
591
|
+
|
|
592
|
+
warnings = filler.validate()
|
|
593
|
+
for w in warnings:
|
|
594
|
+
print(f" WARN: {w}")
|
|
595
|
+
|
|
596
|
+
saved = filler.save(output)
|
|
597
|
+
print(f"\nSaved: {saved}")
|
|
598
|
+
|
|
599
|
+
|
|
600
|
+
def main():
|
|
601
|
+
parser = argparse.ArgumentParser(description=__doc__)
|
|
602
|
+
parser.add_argument("--template", required=True, help="Path to template .docx")
|
|
603
|
+
parser.add_argument("--content", required=True, help="Path to content YAML")
|
|
604
|
+
parser.add_argument("--output", required=True, help="Output .docx path")
|
|
605
|
+
args = parser.parse_args()
|
|
606
|
+
|
|
607
|
+
fill_from_yaml(Path(args.template), Path(args.content), Path(args.output))
|
|
608
|
+
|
|
609
|
+
|
|
610
|
+
if __name__ == "__main__":
|
|
611
|
+
main()
|
|
@@ -0,0 +1,61 @@
|
|
|
1
|
+
#!/usr/bin/env python3
|
|
2
|
+
"""Inspect a Word template — list all tables, cells, and paragraphs.
|
|
3
|
+
|
|
4
|
+
Output identifies fillable cells (likely empty after a label cell).
|
|
5
|
+
|
|
6
|
+
Usage: python3 inspect_template.py <template.docx>
|
|
7
|
+
"""
|
|
8
|
+
import sys
|
|
9
|
+
from pathlib import Path
|
|
10
|
+
|
|
11
|
+
from docx import Document
|
|
12
|
+
|
|
13
|
+
|
|
14
|
+
def cell_text(cell) -> str:
|
|
15
|
+
return "\n".join(p.text for p in cell.paragraphs).strip()
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
def main():
|
|
19
|
+
if len(sys.argv) < 2:
|
|
20
|
+
print(__doc__)
|
|
21
|
+
sys.exit(1)
|
|
22
|
+
|
|
23
|
+
path = Path(sys.argv[1]).expanduser().resolve()
|
|
24
|
+
doc = Document(str(path))
|
|
25
|
+
|
|
26
|
+
print(f"=== Template: {path.name} ===\n")
|
|
27
|
+
|
|
28
|
+
print(f"Sections: {len(doc.sections)}")
|
|
29
|
+
sec = doc.sections[0]
|
|
30
|
+
print(
|
|
31
|
+
f" Page: {sec.page_width.cm:.1f} × {sec.page_height.cm:.1f} cm, "
|
|
32
|
+
f"margins L/R/T/B: {sec.left_margin.cm:.1f}/{sec.right_margin.cm:.1f}/"
|
|
33
|
+
f"{sec.top_margin.cm:.1f}/{sec.bottom_margin.cm:.1f}"
|
|
34
|
+
)
|
|
35
|
+
print()
|
|
36
|
+
|
|
37
|
+
print(f"Tables: {len(doc.tables)}")
|
|
38
|
+
for ti, table in enumerate(doc.tables):
|
|
39
|
+
n_rows = len(table.rows)
|
|
40
|
+
n_cols = len(table.columns)
|
|
41
|
+
print(f"\n[Table {ti}] rows={n_rows}, cols={n_cols}")
|
|
42
|
+
for ri, row in enumerate(table.rows):
|
|
43
|
+
for ci, cell in enumerate(row.cells):
|
|
44
|
+
text = cell_text(cell)
|
|
45
|
+
preview = text.replace("\n", " ⏎ ")
|
|
46
|
+
if len(preview) > 70:
|
|
47
|
+
preview = preview[:67] + "..."
|
|
48
|
+
marker = " [empty]" if not text else ""
|
|
49
|
+
print(f" ({ri},{ci}): {preview!r}{marker}")
|
|
50
|
+
|
|
51
|
+
print(f"\nParagraphs (top-level, not in tables): {len(doc.paragraphs)}")
|
|
52
|
+
for pi, p in enumerate(doc.paragraphs):
|
|
53
|
+
text = p.text.strip()
|
|
54
|
+
if not text:
|
|
55
|
+
continue
|
|
56
|
+
preview = text[:80] + ("..." if len(text) > 80 else "")
|
|
57
|
+
print(f" P{pi}: {preview!r}")
|
|
58
|
+
|
|
59
|
+
|
|
60
|
+
if __name__ == "__main__":
|
|
61
|
+
main()
|