medsci-skills 4.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (702) hide show
  1. package/LICENSE +50 -0
  2. package/README.md +602 -0
  3. package/README_FIRST.md +27 -0
  4. package/bin/medsci-skills.js +159 -0
  5. package/installers/install-macos.command +19 -0
  6. package/installers/install-windows.cmd +26 -0
  7. package/installers/install-windows.ps1 +17 -0
  8. package/installers/install.py +218 -0
  9. package/metadata/skills_catalog.json +452 -0
  10. package/package.json +48 -0
  11. package/skills/academic-aio/SKILL.md +408 -0
  12. package/skills/academic-aio/references/case_studies/kjr_mllm_2025.md +82 -0
  13. package/skills/academic-aio/references/checklists/AIO_GENERAL.md +354 -0
  14. package/skills/academic-aio/references/journal_summarybox_templates.yaml +126 -0
  15. package/skills/academic-aio/references/oac_funding_checklist.yaml +129 -0
  16. package/skills/academic-aio/references/reporting_guideline_mapping.md +39 -0
  17. package/skills/academic-aio/references/schema_markup_templates/CodeRepository.jsonld +32 -0
  18. package/skills/academic-aio/references/schema_markup_templates/Dataset.jsonld +36 -0
  19. package/skills/academic-aio/references/schema_markup_templates/Person.jsonld +30 -0
  20. package/skills/academic-aio/references/schema_markup_templates/README.md +43 -0
  21. package/skills/academic-aio/references/schema_markup_templates/ScholarlyArticle.jsonld +55 -0
  22. package/skills/academic-aio/scripts/batch_metadata_audit.py +169 -0
  23. package/skills/academic-aio/scripts/validate_schema.py +118 -0
  24. package/skills/academic-aio/skill.yml +36 -0
  25. package/skills/academic-aio/templates/aio_audit_checklist.md.j2 +108 -0
  26. package/skills/add-journal/SKILL.md +482 -0
  27. package/skills/add-journal/skill.yml +33 -0
  28. package/skills/analyze-stats/SKILL.md +598 -0
  29. package/skills/analyze-stats/references/analysis_guides/missing_data.md +109 -0
  30. package/skills/analyze-stats/references/analysis_guides/nhis_icd10_mapping.md +247 -0
  31. package/skills/analyze-stats/references/analysis_guides/propensity_score.md +132 -0
  32. package/skills/analyze-stats/references/analysis_guides/regression.md +115 -0
  33. package/skills/analyze-stats/references/analysis_guides/repeated_measures.md +160 -0
  34. package/skills/analyze-stats/references/analysis_guides/survey_weighted.md +366 -0
  35. package/skills/analyze-stats/references/analysis_guides/test_selection.md +86 -0
  36. package/skills/analyze-stats/references/style/figure_style.mplstyle +69 -0
  37. package/skills/analyze-stats/references/style/theme_publication.R +147 -0
  38. package/skills/analyze-stats/references/table-standards/journal-profiles/ajr.yaml +51 -0
  39. package/skills/analyze-stats/references/table-standards/journal-profiles/european_radiology.yaml +55 -0
  40. package/skills/analyze-stats/references/table-standards/journal-profiles/jama.yaml +66 -0
  41. package/skills/analyze-stats/references/table-standards/journal-profiles/lancet.yaml +57 -0
  42. package/skills/analyze-stats/references/table-standards/journal-profiles/nejm.yaml +51 -0
  43. package/skills/analyze-stats/references/table-standards/journal-profiles/radiology.yaml +66 -0
  44. package/skills/analyze-stats/references/table-standards/table-standards.md +287 -0
  45. package/skills/analyze-stats/references/table-standards/table-types/diagnostic_accuracy.md +36 -0
  46. package/skills/analyze-stats/references/table-standards/table-types/meta_analysis.md +58 -0
  47. package/skills/analyze-stats/references/table-standards/table-types/model_comparison.md +36 -0
  48. package/skills/analyze-stats/references/table-standards/table-types/regression_results.md +50 -0
  49. package/skills/analyze-stats/references/table-standards/table-types/table1_demographics.md +51 -0
  50. package/skills/analyze-stats/references/table-standards/tool-comparison.md +79 -0
  51. package/skills/analyze-stats/references/templates/agreement_analysis.py +436 -0
  52. package/skills/analyze-stats/references/templates/dca_plot.R +237 -0
  53. package/skills/analyze-stats/references/templates/diagnostic_accuracy.py +401 -0
  54. package/skills/analyze-stats/references/templates/dta_meta_analysis.R +384 -0
  55. package/skills/analyze-stats/references/templates/forest_plot.py +412 -0
  56. package/skills/analyze-stats/references/templates/likert_summary.py +356 -0
  57. package/skills/analyze-stats/references/templates/meta_analysis.R +365 -0
  58. package/skills/analyze-stats/references/templates/propensity_score.py +478 -0
  59. package/skills/analyze-stats/references/templates/regression.py +425 -0
  60. package/skills/analyze-stats/references/templates/repeated_measures.py +434 -0
  61. package/skills/analyze-stats/references/templates/sample_size.R +382 -0
  62. package/skills/analyze-stats/references/templates/survey_weighted_analysis.py +411 -0
  63. package/skills/analyze-stats/references/templates/survival_analysis.py +325 -0
  64. package/skills/analyze-stats/references/templates/table1_demographics.py +287 -0
  65. package/skills/analyze-stats/scripts/check_generated_code.py +335 -0
  66. package/skills/analyze-stats/skill.yml +38 -0
  67. package/skills/analyze-stats/tests/fixtures/gen_bad.R +16 -0
  68. package/skills/analyze-stats/tests/fixtures/gen_bad.py +24 -0
  69. package/skills/analyze-stats/tests/fixtures/gen_clean.py +21 -0
  70. package/skills/analyze-stats/tests/test_generated_code.sh +59 -0
  71. package/skills/analyze-stats/tests/test_survival_template.sh +53 -0
  72. package/skills/author-strategy/SKILL.md +117 -0
  73. package/skills/author-strategy/analyze_patterns.py +303 -0
  74. package/skills/author-strategy/fetch_pubmed.py +374 -0
  75. package/skills/author-strategy/skill.yml +34 -0
  76. package/skills/batch-cohort/SKILL.md +223 -0
  77. package/skills/batch-cohort/references/base_template_knhanes.R +210 -0
  78. package/skills/batch-cohort/references/batch_template_generator.R +222 -0
  79. package/skills/batch-cohort/references/variable_coding_registry.md +136 -0
  80. package/skills/batch-cohort/skill.yml +35 -0
  81. package/skills/calc-sample-size/SKILL.md +491 -0
  82. package/skills/calc-sample-size/references/formulas.md +655 -0
  83. package/skills/calc-sample-size/references/observational_cohort.md +49 -0
  84. package/skills/calc-sample-size/skill.yml +51 -0
  85. package/skills/check-reporting/SKILL.md +534 -0
  86. package/skills/check-reporting/references/LICENSES.md +41 -0
  87. package/skills/check-reporting/references/checklists/AMSTAR2.md +54 -0
  88. package/skills/check-reporting/references/checklists/ARRIVE_2.md +234 -0
  89. package/skills/check-reporting/references/checklists/CARE.md +102 -0
  90. package/skills/check-reporting/references/checklists/CLAIM_2024.md +128 -0
  91. package/skills/check-reporting/references/checklists/CLEAR.md +113 -0
  92. package/skills/check-reporting/references/checklists/CONSORT.md +86 -0
  93. package/skills/check-reporting/references/checklists/COSMIN_RoB.md +136 -0
  94. package/skills/check-reporting/references/checklists/GRRAS.md +61 -0
  95. package/skills/check-reporting/references/checklists/MI_CLEAR_LLM.md +167 -0
  96. package/skills/check-reporting/references/checklists/MOOSE.md +85 -0
  97. package/skills/check-reporting/references/checklists/NOS.md +88 -0
  98. package/skills/check-reporting/references/checklists/PRISMA_2020.md +135 -0
  99. package/skills/check-reporting/references/checklists/PRISMA_DTA.md +36 -0
  100. package/skills/check-reporting/references/checklists/PRISMA_P.md +56 -0
  101. package/skills/check-reporting/references/checklists/PROBAST.md +75 -0
  102. package/skills/check-reporting/references/checklists/PROBAST_AI.md +130 -0
  103. package/skills/check-reporting/references/checklists/QUADAS2.md +77 -0
  104. package/skills/check-reporting/references/checklists/QUADAS_C.md +131 -0
  105. package/skills/check-reporting/references/checklists/ROBINS_E.md +179 -0
  106. package/skills/check-reporting/references/checklists/ROBINS_I.md +87 -0
  107. package/skills/check-reporting/references/checklists/ROBIS.md +114 -0
  108. package/skills/check-reporting/references/checklists/ROB_ME.md +126 -0
  109. package/skills/check-reporting/references/checklists/RoB2.md +79 -0
  110. package/skills/check-reporting/references/checklists/RoB_NMA.md +96 -0
  111. package/skills/check-reporting/references/checklists/SPIRIT.md +112 -0
  112. package/skills/check-reporting/references/checklists/SQUIRE_2.md +68 -0
  113. package/skills/check-reporting/references/checklists/STARD.md +129 -0
  114. package/skills/check-reporting/references/checklists/STARD_AI.md +211 -0
  115. package/skills/check-reporting/references/checklists/STROBE.md +80 -0
  116. package/skills/check-reporting/references/checklists/SWiM.md +33 -0
  117. package/skills/check-reporting/references/checklists/TRIPOD.md +157 -0
  118. package/skills/check-reporting/references/checklists/TRIPOD_AI.md +140 -0
  119. package/skills/check-reporting/references/step4c_registration_timing.md +93 -0
  120. package/skills/check-reporting/references/step4d_prisma_figure_audit.md +137 -0
  121. package/skills/check-reporting/scripts/check_checklist_exists.py +183 -0
  122. package/skills/check-reporting/scripts/check_checklist_version.py +168 -0
  123. package/skills/check-reporting/scripts/check_framework_naming.py +206 -0
  124. package/skills/check-reporting/scripts/check_prisma_figure.py +209 -0
  125. package/skills/check-reporting/scripts/prisma_cascade_check.py +274 -0
  126. package/skills/check-reporting/skill.yml +41 -0
  127. package/skills/check-reporting/tests/fixtures/framework_bad.md +8 -0
  128. package/skills/check-reporting/tests/fixtures/framework_clean.md +7 -0
  129. package/skills/check-reporting/tests/test_checklist_fail_fast.sh +77 -0
  130. package/skills/check-reporting/tests/test_checklist_version.sh +72 -0
  131. package/skills/check-reporting/tests/test_framework_naming.sh +45 -0
  132. package/skills/check-reporting/tests/test_prisma_cascade.sh +104 -0
  133. package/skills/clean-data/SKILL.md +180 -0
  134. package/skills/clean-data/references/cleaning_patterns.md +299 -0
  135. package/skills/clean-data/references/profiling_template.py +304 -0
  136. package/skills/clean-data/scripts/check_structural_zero.py +174 -0
  137. package/skills/clean-data/skill.yml +35 -0
  138. package/skills/clean-data/tests/fixtures/smoking.csv +8 -0
  139. package/skills/clean-data/tests/test_structural_zero.sh +49 -0
  140. package/skills/cross-national/SKILL.md +264 -0
  141. package/skills/cross-national/skill.yml +37 -0
  142. package/skills/define-variables/SKILL.md +146 -0
  143. package/skills/define-variables/references/common_definitions.md +190 -0
  144. package/skills/define-variables/skill.yml +34 -0
  145. package/skills/define-variables/templates/variable_operationalization.md +64 -0
  146. package/skills/deidentify/SKILL.md +203 -0
  147. package/skills/deidentify/deidentify.py +1224 -0
  148. package/skills/deidentify/locales/_template.json +45 -0
  149. package/skills/deidentify/locales/au.json +43 -0
  150. package/skills/deidentify/locales/ca.json +44 -0
  151. package/skills/deidentify/locales/cn.json +47 -0
  152. package/skills/deidentify/locales/de.json +48 -0
  153. package/skills/deidentify/locales/fr.json +48 -0
  154. package/skills/deidentify/locales/in.json +48 -0
  155. package/skills/deidentify/locales/jp.json +48 -0
  156. package/skills/deidentify/locales/kr.json +48 -0
  157. package/skills/deidentify/locales/uk.json +45 -0
  158. package/skills/deidentify/locales/us.json +43 -0
  159. package/skills/deidentify/references/date_shift_guide.md +82 -0
  160. package/skills/deidentify/references/hipaa_18_identifiers.md +48 -0
  161. package/skills/deidentify/references/korean_phi_patterns.md +135 -0
  162. package/skills/deidentify/skill.yml +43 -0
  163. package/skills/deidentify/tests/README.md +26 -0
  164. package/skills/deidentify/tests/test_clean.csv +16 -0
  165. package/skills/deidentify/tests/test_edge_cases.csv +11 -0
  166. package/skills/deidentify/tests/test_phi_korean.csv +11 -0
  167. package/skills/design-ai-benchmarking/SKILL.md +214 -0
  168. package/skills/design-ai-benchmarking/references/benchmark_export_schema.json +69 -0
  169. package/skills/design-ai-benchmarking/references/elicitation_rubric_template.md +37 -0
  170. package/skills/design-ai-benchmarking/skill.yml +38 -0
  171. package/skills/design-study/SKILL.md +298 -0
  172. package/skills/design-study/skill.yml +33 -0
  173. package/skills/fill-icmje-coi/SKILL.md +216 -0
  174. package/skills/fill-icmje-coi/scripts/fill_icmje_coi.py +140 -0
  175. package/skills/fill-icmje-coi/skill.yml +35 -0
  176. package/skills/fill-icmje-coi/templates/icmje_coi_seed_synthetic.docx +0 -0
  177. package/skills/fill-protocol/SKILL.md +248 -0
  178. package/skills/fill-protocol/examples/example_irb_template.yaml +53 -0
  179. package/skills/fill-protocol/references/best_practices.md +121 -0
  180. package/skills/fill-protocol/scripts/doc_to_docx.py +111 -0
  181. package/skills/fill-protocol/scripts/fill_form.py +611 -0
  182. package/skills/fill-protocol/scripts/inspect_template.py +61 -0
  183. package/skills/fill-protocol/setup.sh +162 -0
  184. package/skills/fill-protocol/skill.yml +37 -0
  185. package/skills/find-cohort-gap/SKILL.md +309 -0
  186. package/skills/find-cohort-gap/references/cohort_profile_template.md +93 -0
  187. package/skills/find-cohort-gap/references/onepager_template.md +84 -0
  188. package/skills/find-cohort-gap/references/pattern_scoring_rubric.md +169 -0
  189. package/skills/find-cohort-gap/references/saturation_query_templates.md +143 -0
  190. package/skills/find-cohort-gap/skill.yml +35 -0
  191. package/skills/find-journal/POLICY.md +87 -0
  192. package/skills/find-journal/SKILL.md +340 -0
  193. package/skills/find-journal/references/journal_profiles/AJNR.md +29 -0
  194. package/skills/find-journal/references/journal_profiles/AJR.md +30 -0
  195. package/skills/find-journal/references/journal_profiles/Abdominal_Radiology.md +30 -0
  196. package/skills/find-journal/references/journal_profiles/Academic_Radiology.md +30 -0
  197. package/skills/find-journal/references/journal_profiles/Annals_of_Internal_Medicine.md +33 -0
  198. package/skills/find-journal/references/journal_profiles/Artificial_Intelligence_in_Medicine.md +28 -0
  199. package/skills/find-journal/references/journal_profiles/BMC_Medicine.md +31 -0
  200. package/skills/find-journal/references/journal_profiles/British_Journal_of_Radiology.md +39 -0
  201. package/skills/find-journal/references/journal_profiles/CVIR.md +30 -0
  202. package/skills/find-journal/references/journal_profiles/Chest.md +39 -0
  203. package/skills/find-journal/references/journal_profiles/Clinical_Radiology.md +30 -0
  204. package/skills/find-journal/references/journal_profiles/Clinical_and_Molecular_Hepatology.md +32 -0
  205. package/skills/find-journal/references/journal_profiles/Diabetes_Metabolism_Journal.md +36 -0
  206. package/skills/find-journal/references/journal_profiles/Diagnostic_and_Interventional_Radiology.md +32 -0
  207. package/skills/find-journal/references/journal_profiles/Endocrinology_and_Metabolism.md +37 -0
  208. package/skills/find-journal/references/journal_profiles/European_Journal_of_Preventive_Cardiology.md +39 -0
  209. package/skills/find-journal/references/journal_profiles/European_Radiology.md +29 -0
  210. package/skills/find-journal/references/journal_profiles/Hepatology_Communications.md +40 -0
  211. package/skills/find-journal/references/journal_profiles/Hepatology_International.md +37 -0
  212. package/skills/find-journal/references/journal_profiles/IEEE_JBHI.md +28 -0
  213. package/skills/find-journal/references/journal_profiles/IEEE_TMI.md +28 -0
  214. package/skills/find-journal/references/journal_profiles/INSI.md +29 -0
  215. package/skills/find-journal/references/journal_profiles/Investigative_Radiology.md +25 -0
  216. package/skills/find-journal/references/journal_profiles/JACC_Advances.md +41 -0
  217. package/skills/find-journal/references/journal_profiles/JACC_Asia.md +30 -0
  218. package/skills/find-journal/references/journal_profiles/JACR.md +28 -0
  219. package/skills/find-journal/references/journal_profiles/JAMA.md +40 -0
  220. package/skills/find-journal/references/journal_profiles/JAMA_Network_Open.md +30 -0
  221. package/skills/find-journal/references/journal_profiles/JCSM.md +39 -0
  222. package/skills/find-journal/references/journal_profiles/JKMS.md +32 -0
  223. package/skills/find-journal/references/journal_profiles/JMIR.md +29 -0
  224. package/skills/find-journal/references/journal_profiles/JMIR_Medical_Education.md +29 -0
  225. package/skills/find-journal/references/journal_profiles/JNIS.md +35 -0
  226. package/skills/find-journal/references/journal_profiles/JVIR.md +31 -0
  227. package/skills/find-journal/references/journal_profiles/Journal_of_Biomedical_Informatics.md +29 -0
  228. package/skills/find-journal/references/journal_profiles/Journal_of_Clinical_Endocrinology_and_Metabolism.md +40 -0
  229. package/skills/find-journal/references/journal_profiles/Journal_of_Magnetic_Resonance_Imaging.md +30 -0
  230. package/skills/find-journal/references/journal_profiles/Journal_of_Nuclear_Medicine.md +31 -0
  231. package/skills/find-journal/references/journal_profiles/Journal_of_Stroke.md +32 -0
  232. package/skills/find-journal/references/journal_profiles/KJR.md +38 -0
  233. package/skills/find-journal/references/journal_profiles/Korean_Circulation_Journal.md +38 -0
  234. package/skills/find-journal/references/journal_profiles/Korean_Journal_of_Internal_Medicine.md +36 -0
  235. package/skills/find-journal/references/journal_profiles/Lancet_Diabetes_and_Endocrinology.md +40 -0
  236. package/skills/find-journal/references/journal_profiles/Lancet_Gastroenterology_and_Hepatology.md +49 -0
  237. package/skills/find-journal/references/journal_profiles/Lancet_Infectious_Diseases.md +38 -0
  238. package/skills/find-journal/references/journal_profiles/Lancet_Neurology.md +39 -0
  239. package/skills/find-journal/references/journal_profiles/Lancet_Oncology.md +40 -0
  240. package/skills/find-journal/references/journal_profiles/Lancet_Psychiatry.md +38 -0
  241. package/skills/find-journal/references/journal_profiles/Lancet_Public_Health.md +30 -0
  242. package/skills/find-journal/references/journal_profiles/Lancet_Respiratory_Medicine.md +39 -0
  243. package/skills/find-journal/references/journal_profiles/Liver_International.md +33 -0
  244. package/skills/find-journal/references/journal_profiles/Medical_Image_Analysis.md +28 -0
  245. package/skills/find-journal/references/journal_profiles/NEJM.md +33 -0
  246. package/skills/find-journal/references/journal_profiles/Nature_Machine_Intelligence.md +31 -0
  247. package/skills/find-journal/references/journal_profiles/Nature_Medicine.md +39 -0
  248. package/skills/find-journal/references/journal_profiles/Neuroradiology.md +31 -0
  249. package/skills/find-journal/references/journal_profiles/Nutrition_Metabolism_and_Cardiovascular_Diseases.md +39 -0
  250. package/skills/find-journal/references/journal_profiles/PLOS_Medicine.md +32 -0
  251. package/skills/find-journal/references/journal_profiles/RYAI.md +28 -0
  252. package/skills/find-journal/references/journal_profiles/Radiology.md +29 -0
  253. package/skills/find-journal/references/journal_profiles/Skeletal_Radiology.md +31 -0
  254. package/skills/find-journal/references/journal_profiles/Stroke.md +37 -0
  255. package/skills/find-journal/references/journal_profiles/The_BMJ.md +31 -0
  256. package/skills/find-journal/references/journal_profiles/The_Lancet.md +31 -0
  257. package/skills/find-journal/references/journal_profiles/The_Lancet_Digital_Health.md +29 -0
  258. package/skills/find-journal/references/journal_profiles/World_Journal_of_Hepatology.md +53 -0
  259. package/skills/find-journal/references/journal_profiles/npj_Digital_Medicine.md +29 -0
  260. package/skills/find-journal/skill.yml +34 -0
  261. package/skills/fulltext-retrieval/SKILL.md +174 -0
  262. package/skills/fulltext-retrieval/fetch_oa.py +433 -0
  263. package/skills/fulltext-retrieval/pdf_to_md.py +160 -0
  264. package/skills/fulltext-retrieval/skill.yml +41 -0
  265. package/skills/generate-codebook/SKILL.md +155 -0
  266. package/skills/generate-codebook/references/codebook_schema.md +76 -0
  267. package/skills/generate-codebook/scripts/generate_codebook.py +278 -0
  268. package/skills/generate-codebook/skill.yml +35 -0
  269. package/skills/generate-codebook/tests/test_generate_codebook.sh +76 -0
  270. package/skills/grant-builder/SKILL.md +251 -0
  271. package/skills/grant-builder/skill.yml +34 -0
  272. package/skills/humanize/SKILL.md +251 -0
  273. package/skills/humanize/references/ai_patterns.md +571 -0
  274. package/skills/humanize/skill.yml +33 -0
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@@ -0,0 +1,180 @@
1
+ # Journal Profile: IEEE Transactions on Medical Imaging (IEEE TMI)
2
+
3
+ ## Journal Identity
4
+
5
+ - **Full name**: IEEE Transactions on Medical Imaging
6
+ - **Abbreviation**: IEEE Trans Med Imaging
7
+ - **Publisher**: IEEE (Institute of Electrical and Electronics Engineers)
8
+ - **ISSN**: 0278-0062 (print), 1558-254X (online)
9
+ - **Frequency**: Monthly (12 issues/year)
10
+ - **Impact Factor**: ~10.6 (JCR 2023), top-ranked in medical imaging engineering
11
+ - **Open Access**: Hybrid (IEEE OA option with APC ~$2,095)
12
+ - **Acceptance rate**: ~20-25%
13
+ - **Peer review**: Single-blind; associate editors assign 3+ expert reviewers
14
+
15
+ ## Manuscript Types and Page Limits
16
+
17
+ | Type | Page Limit | Abstract | References |
18
+ |------|-----------|----------|------------|
19
+ | Regular Paper | 12 pages (IEEE 2-column) | 250 words | No strict limit |
20
+ | Short Paper | 6 pages | 150 words | No strict limit |
21
+ | Correspondence | 3 pages | 100 words | 15 |
22
+
23
+ **Page limits include everything**: text, figures, tables, references. This is stricter than word-count journals — plan figure sizes carefully.
24
+
25
+ **Overlength charges**: $175 per page beyond the limit (mandatory).
26
+
27
+ ---
28
+
29
+ ## Abstract Requirements
30
+
31
+ **Unstructured abstract, 250 words maximum:**
32
+
33
+ Single paragraph covering:
34
+ - Problem statement and clinical relevance (1-2 sentences)
35
+ - Proposed approach (2-3 sentences)
36
+ - Key experimental results with metrics (2-3 sentences)
37
+ - Conclusion/significance (1 sentence)
38
+
39
+ ---
40
+
41
+ ## Required Journal-Specific Elements
42
+
43
+ ### 1. IEEE Keywords
44
+
45
+ Select from the IEEE controlled keyword taxonomy. Typically 5-8 keywords including:
46
+ - Index Terms from IEEE Thesaurus
47
+ - Common: "medical image analysis," "deep learning," "convolutional neural networks," "image segmentation," "computed tomography," "magnetic resonance imaging"
48
+
49
+ ### 2. IEEE Author Profile
50
+
51
+ Each author needs an IEEE-format biography (2-3 sentences: degree, institution, research interests). Placed at the end of the paper with optional author photo.
52
+
53
+ ### 3. Acknowledgment Section
54
+
55
+ Funding sources and grant numbers in a dedicated Acknowledgment section (before References).
56
+
57
+ ---
58
+
59
+ ## Required Sections (Regular Paper)
60
+
61
+ 1. **Introduction** — problem statement, literature review, contribution summary (typically bulleted list of contributions at end)
62
+ 2. **Related Work** — detailed comparison with prior approaches
63
+ 3. **Methods / Proposed Method**
64
+ - Mathematical formulation with equations
65
+ - Architecture description with diagram
66
+ - Training procedure: loss function, optimizer, hyperparameters
67
+ - Implementation details
68
+ 4. **Experiments**
69
+ - Datasets: description, split strategy, preprocessing
70
+ - Evaluation metrics
71
+ - Baseline methods
72
+ - Ablation study
73
+ - Computational complexity analysis
74
+ 5. **Results and Discussion** — can be combined or separate
75
+ 6. **Conclusion**
76
+ 7. **Acknowledgment**
77
+ 8. **References**
78
+ 9. **Author Biographies**
79
+
80
+ ---
81
+
82
+ ## Statistical Reporting
83
+
84
+ IEEE TMI follows engineering/computing conventions:
85
+ - Report metrics with mean and standard deviation across folds, runs, or subjects.
86
+ - Statistical significance: paired t-test or Wilcoxon signed-rank between methods; report exact P values.
87
+ - For segmentation: Dice, Hausdorff distance (HD95), average surface distance (ASD).
88
+ - For detection: sensitivity at fixed false positive rates, FROC.
89
+ - For classification: AUC, accuracy, sensitivity, specificity, F1.
90
+ - Ablation table: systematically add/remove components with corresponding metric changes.
91
+ - Computational cost: FLOPs, parameters, training time, inference time, GPU memory.
92
+ - Cross-validation: report per-fold results or confidence intervals, not just mean.
93
+ - Reproducibility: random seed, number of runs, hardware specification.
94
+ - Software framework and version must be identified.
95
+
96
+ ---
97
+
98
+ ## Formatting
99
+
100
+ ### IEEE Two-Column Format
101
+
102
+ - **Template**: Use `IEEEtran.cls` LaTeX class (mandatory for camera-ready)
103
+ - **Font**: Times New Roman (auto in IEEEtran)
104
+ - **Margins**: IEEE standard (auto in template)
105
+ - **Equations**: Numbered sequentially; referenced as (1), (2), etc.
106
+ - **Figures**: Fit within single column (3.5 in / 88 mm) or span both columns (7.16 in / 182 mm)
107
+ - **Tables**: Same column/span rules as figures
108
+ - **References**: IEEE abbreviated style (e.g., [1], [2])
109
+
110
+ ### Figure Requirements
111
+
112
+ - **Resolution**: 300 DPI minimum (600 DPI for line art)
113
+ - **Format**: PDF, EPS, or high-resolution PNG/TIFF
114
+ - **Color**: Free for online; grayscale conversion should be legible
115
+ - **Captions**: Below figures; brief but self-explanatory
116
+ - **Size matters**: figures consume page budget — use multi-panel layouts efficiently
117
+
118
+ ---
119
+
120
+ ## Common Rejection Reasons
121
+
122
+ 1. **Page limit exceeded** — 12-page limit is strict; overlength papers are returned without review
123
+ 2. **Insufficient novelty** — applying existing deep learning to new dataset without methodological innovation
124
+ 3. **Unfair experimental comparison** — different training conditions between proposed and baseline methods
125
+ 4. **Missing ablation study** — IEEE TMI reviewers consistently require component-wise evaluation
126
+ 5. **Poor writing quality** — IEEE TMI has high standards for technical writing clarity
127
+ 6. **No comparison with recent methods** — must include methods from the last 2 years
128
+ 7. **Single dataset** — multi-dataset evaluation expected for generalizability
129
+ 8. **Conference paper overlap** — if extending a conference paper (MICCAI, ISBI), must clearly state and quantify the additional contribution (typically 30%+ new content)
130
+
131
+ ---
132
+
133
+ ## Cover Letter
134
+
135
+ IEEE TMI does not require a formal cover letter but ScholarOne submission requires:
136
+ - Manuscript type selection
137
+ - Suggested reviewers (3-5 with affiliations and emails)
138
+ - Statement of originality
139
+ - If conference extension: explicit statement of what is new (with percentage estimate)
140
+
141
+ ---
142
+
143
+ ## Author Guidelines URL
144
+
145
+ https://www.embs.org/tmi/authors/
146
+
147
+ ---
148
+
149
+ ## Conference-to-Journal Extension
150
+
151
+ IEEE TMI commonly receives extended versions of MICCAI, ISBI, IPMI papers. Requirements:
152
+ - At least 30% new content (experiments, methods, or analysis)
153
+ - Must cite and explicitly compare with conference version
154
+ - Reviewers assess the delta, not just the full paper
155
+ - State clearly in cover letter and introduction what is new
156
+
157
+ ---
158
+
159
+ ## Positioning
160
+
161
+ IEEE TMI is appropriate when:
162
+ - Novel imaging algorithm with rigorous quantitative evaluation
163
+ - New reconstruction, registration, or segmentation method with mathematical foundation
164
+ - Multi-modal fusion or novel imaging physics-informed approach
165
+ - Comprehensive benchmark study on medical imaging task
166
+ - Conference paper extension with substantial new experiments/methods
167
+
168
+ Not appropriate for: clinical outcome studies without technical contribution (use clinical journals), pure application of existing methods, papers without quantitative evaluation on medical data.
169
+
170
+ ---
171
+
172
+ ## Differentiation from Related Venues
173
+
174
+ | Dimension | IEEE TMI | MedIA | IEEE JBHI |
175
+ |-----------|---------|-------|-----------|
176
+ | Format | 12-page IEEE 2-column | No page limit, Elsevier | 10-page IEEE 2-column |
177
+ | Scope | Medical imaging methods | Medical image analysis methods | Health informatics (broader) |
178
+ | Emphasis | Imaging + math rigor | Methods depth + ablation | EHR, wearables, signals + imaging |
179
+ | LaTeX class | IEEEtran (mandatory) | elsarticle (preferred) | IEEEtran (mandatory) |
180
+ | Typical length | Shorter, denser | Longer, more detailed | Shorter |
@@ -0,0 +1,163 @@
1
+ # Journal Profile: Interventional Neuroradiology (INSI)
2
+
3
+ ## Basic Information
4
+
5
+ - **Publisher:** SAGE Publications
6
+ - **Society:** European Society of Minimally Invasive Neurological Therapy (ESMINT) / World Federation of Interventional and Therapeutic Neuroradiology (WFITN)
7
+ - **Impact Factor:** ~2.5–3.0 (2023–2024)
8
+ - **Scope:** Endovascular and minimally invasive neuroradiology; neurovascular interventions; stroke intervention; head/neck vascular procedures
9
+ - **Open Access:** Optional (SAGE Choice)
10
+ - **Language:** American English
11
+
12
+ ---
13
+
14
+ ## Scope — Covered Topics
15
+
16
+ - Cerebral aneurysm treatment (coiling, stent-assisted coiling, flow diversion, WEB device)
17
+ - Mechanical thrombectomy for acute ischemic stroke
18
+ - Carotid and vertebral artery stenting
19
+ - Cerebral arteriovenous malformation (AVM) embolization
20
+ - Dural arteriovenous fistula (dAVF) embolization
21
+ - Intracranial atherosclerosis treatment
22
+ - Venous sinus stenting for idiopathic intracranial hypertension
23
+ - Tumor embolization (head/neck, meningioma)
24
+ - Spinal vascular interventions
25
+ - Novel devices and techniques in neurointerventional radiology
26
+
27
+ ---
28
+
29
+ ## Manuscript Types and Word Limits
30
+
31
+ | Type | Body Word Limit | Abstract | Figures | References |
32
+ |------|----------------|----------|---------|------------|
33
+ | Original Article | 3500 words | 250 words | 8 | 40 |
34
+ | Review Article | 5000 words | 300 words | 10 | 60 |
35
+ | Technical Note | 2000 words | 150 words | 6 | 20 |
36
+ | Case Report | 2000 words | 200 words | 6 | 20 |
37
+ | Letter | 600 words | None | 2 | 5 |
38
+
39
+ ---
40
+
41
+ ## Abstract Requirements
42
+
43
+ **Structured abstract, 250 words:**
44
+
45
+ ```
46
+ Background and Purpose: [Why this procedure/study is needed; clinical context]
47
+ Methods: [Study design, patient population, procedural details, outcomes assessed]
48
+ Results: [Technical success rate, clinical outcomes, complication rates with 95% CI,
49
+ follow-up duration]
50
+ Conclusions: [Main conclusion; clinical implication]
51
+ ```
52
+
53
+ ---
54
+
55
+ ## Domain-Specific Outcome Measures
56
+
57
+ ### For Stroke/Thrombectomy Studies
58
+
59
+ - **Recanalization:** mTICI (modified Treatment in Cerebral Infarction) scale — state score threshold for success (typically mTICI ≥ 2b)
60
+ - **Clinical outcome at 90 days:** mRS (modified Rankin Scale) — good outcome = mRS 0–2
61
+ - **Early neurological improvement:** NIHSS change at 24 hours
62
+ - **Mortality at 90 days**
63
+ - **Symptomatic intracranial hemorrhage (sICH):** ECASS II or SITS criteria — specify which
64
+
65
+ ### For Aneurysm Studies
66
+
67
+ - **Technical success:** Complete coil/device deployment without procedure-related mortality or major stroke
68
+ - **Aneurysm occlusion:** Raymond-Roy Occlusion Classification (RROC) or O'Kelly-Marotta (OKM) scale for flow diversion
69
+ - **Procedure-related complications:** stroke, parent artery occlusion, aneurysm perforation, thromboembolic events
70
+ - **Aneurysm recurrence:** Defined explicitly (e.g., recanalization requiring retreatment)
71
+ - **Follow-up imaging:** DSA (gold standard) or MRA; state modality and timing
72
+
73
+ ### For General Neurointerventional Studies
74
+
75
+ - **Technical success rate:** [Clearly define what constitutes technical success]
76
+ - **Procedural complications:** Define minor (no permanent deficit) vs. major (permanent neurological deficit or death)
77
+ - **Clinical outcomes:** Follow-up mRS or equivalent functional score
78
+ - **Radiation exposure:** DAP (dose area product), fluoroscopy time (for technique comparison studies)
79
+ - **Procedure time:** From femoral puncture to end of procedure
80
+
81
+ ---
82
+
83
+ ## Required Sections
84
+
85
+ 1. **Introduction** — Clinical background; why the specific technique/device/approach is being studied
86
+ 2. **Materials and Methods**
87
+ - Ethics: IRB number + consent (or exemption for retrospective studies)
88
+ - Patient population: Consecutive or selected? Selection criteria for treatment
89
+ - Procedural details: Describe technique in enough detail to be replicable; include specific devices/catheters/materials with brand names and catalog numbers for first-time techniques
90
+ - Outcome definitions: Define each outcome explicitly before reporting results
91
+ - Statistical analysis
92
+ 3. **Results**
93
+ - Patient baseline characteristics (Table 1)
94
+ - Technical outcomes (Table 2)
95
+ - Clinical outcomes at each follow-up time point
96
+ - Complications (ALL complications — report even if none: "No procedure-related complications occurred")
97
+ 4. **Discussion**
98
+ 5. **Conclusion**
99
+
100
+ ---
101
+
102
+ ## Common Complications to Always Address
103
+
104
+ For any neurointerventional study, explicitly address these even if not observed:
105
+ - Thromboembolic events (stroke, TIA)
106
+ - Access site complications (hematoma, pseudoaneurysm, AV fistula)
107
+ - Vessel perforation or rupture
108
+ - Contrast reaction
109
+ - Radiation injury (for prolonged procedures)
110
+ - Device-specific complications (coil migration, stent misplacement)
111
+
112
+ ---
113
+
114
+ ## Statistical Requirements
115
+
116
+ - Report 95% CI for all primary outcomes (especially rates/proportions)
117
+ - Clopper-Pearson exact 95% CI for proportions (appropriate for small N)
118
+ - Kaplan-Meier for time-to-event outcomes (recurrence, re-treatment)
119
+ - For technique comparisons: appropriate parametric/non-parametric test with effect size
120
+ - Report N analyzed at each follow-up time point (attrition matters)
121
+
122
+ ---
123
+
124
+ ## Figures for Neurointerventional Papers
125
+
126
+ | Figure | Content |
127
+ |--------|---------|
128
+ | Figure 1 | Representative case — pre-procedure angiogram |
129
+ | Figure 2 | Intra-procedure steps (guide catheter placement, device deployment) |
130
+ | Figure 3 | Post-procedure result (immediate angiogram) |
131
+ | Figure 4 | Follow-up angiogram or imaging |
132
+ | Figure 5 | Outcome charts (bar chart of mRS distribution, OKM grades) |
133
+
134
+ DSA images should be high-quality screen captures or exports from angiography workstation. Show projections that best demonstrate the finding (typically AP and lateral, or working projection for treatment).
135
+
136
+ ---
137
+
138
+ ## Common Rejection Reasons
139
+
140
+ 1. **Small single-center series** — INSI accepts these for novel techniques but sample size must be explicitly justified
141
+ 2. **Missing complication reporting** — every study must report all complications, including minor ones and access site issues
142
+ 3. **Undefined outcome measures** — define mTICI success threshold, mRS cutoff, and occlusion classification before reporting results
143
+ 4. **No follow-up imaging** — aneurysm studies without angiographic follow-up (minimum 6–12 months) are typically insufficient for original articles
144
+ 5. **Heterogeneous patient mix** — mixing ruptured and unruptured aneurysms without subgroup analysis is a common methodology concern
145
+ 6. **Operator experience not described** — for technique papers, describe center volume (procedures/year) and operator experience
146
+
147
+ ---
148
+
149
+ ## Author Guidelines URL
150
+
151
+ https://journals.sagepub.com/author-instructions/INI
152
+
153
+ ---
154
+
155
+ ## Positioning
156
+
157
+ INSI is appropriate when:
158
+ - Study is specifically about neurointerventional procedures or devices
159
+ - Technique paper for a new or modified approach
160
+ - Case series demonstrating feasibility of a new technique (N = 5–20 acceptable for technical notes)
161
+ - Retrospective registry study with good follow-up
162
+
163
+ INSI is not appropriate for: purely diagnostic neuroradiology (without intervention), brain tumor imaging without intervention, purely basic science (use JNIS or AJNR for those).
@@ -0,0 +1,86 @@
1
+ # Investigative Radiology
2
+
3
+ ## Journal Identity
4
+
5
+ - **Full name**: Investigative Radiology
6
+ - **Abbreviation**: Invest Radiol
7
+ - **Publisher**: Wolters Kluwer / Lippincott Williams & Wilkins
8
+ - **ISSN**: Not specified in guidelines
9
+ - **Frequency**: Monthly
10
+ - **Impact Factor**: Not specified in guidelines
11
+ - **Open Access**: Hybrid (subscription + OA option under CC BY-NC-ND)
12
+ - **APC**: See Wolters Kluwer policies; read-and-publish agreements available
13
+
14
+ ## Manuscript Types and Word Limits
15
+
16
+ | Type | Abstract | Manuscript Body | References | Figures/Tables |
17
+ |------|----------|----------------|------------|----------------|
18
+ | Original Research | No word limit (structured) | No strict cap | No cap | No strict cap |
19
+
20
+ Case reports are NOT accepted.
21
+
22
+ ## Abstract Format
23
+
24
+ Structured with four headings:
25
+ 1. **Objectives**
26
+ 2. **Materials and Methods**
27
+ 3. **Results**
28
+ 4. **Conclusions**
29
+
30
+ No word limit stated. No references in abstract. Limit abbreviations and acronyms.
31
+
32
+ ## Keywords
33
+
34
+ Up to 10 keywords.
35
+
36
+ ## Required Sections
37
+
38
+ 1. **Introduction**
39
+ 2. **Materials and Methods**
40
+ 3. **Results**
41
+ 4. **Discussion**
42
+
43
+ Required submission files (all separate):
44
+ - **Cover letter**: authorship statement, COI, ethical adherence
45
+ - **Title page**: title, authors with degrees/affiliations, corresponding author, running head (max 45 characters), funding, COI statement
46
+ - **Acknowledgment section** (optional, separate file)
47
+ - **Manuscript**: title, abstract, keywords, body, tables, figure legends
48
+ - **Figures**: separate image files
49
+
50
+ ## Citation Style
51
+
52
+ - AMA (American Medical Association) style, 11th edition
53
+ - Numbered sequentially in order of appearance
54
+ - More than 3 authors: list first 3, then "et al."
55
+ - Journal abbreviations per Index Medicus
56
+ - Example: `Rand NS, Dawson JM, Juliao SF, et al. In vivo macrophage recruitment by murine intervertebral disc cells. J Spinal Disord. 2001;14:339-342.`
57
+ - Unpublished data/personal communications: cite in text parenthetically, not in reference list
58
+
59
+ ## Reporting Guidelines
60
+
61
+ - Follow ICMJE authorship criteria (all four)
62
+ - Declaration of Helsinki for human studies
63
+ - ARRIVE guidelines for animal studies
64
+ - CONSORT for randomized trials
65
+
66
+ ## Statistical Reporting
67
+
68
+ Follows ICMJE statistical reporting recommendations:
69
+ - Report exact p-values; do not use "P < .05" as a substitute for exact values.
70
+ - 95% CI required for all primary outcomes.
71
+ - Specify the statistical test used for each comparison; parametric vs non-parametric choice must be justified.
72
+ - For diagnostic/prognostic studies: AUC with 95% CI; calibration required for prediction models.
73
+ - Missing data handling must be described in Methods.
74
+ - Statistical software and version required in Methods.
75
+ - No journal-specific statistical reporting requirements beyond ICMJE standards are published; follow discipline-appropriate guidelines (STARD, TRIPOD, STROBE).
76
+
77
+ ## Special Notes
78
+
79
+ - **Emphasizes early and timely publication** of diagnostic imaging research.
80
+ - **AI policy**: AI tools may NOT be listed as author; use must be disclosed in cover letter and Acknowledgments section. AI use is discouraged.
81
+ - **Co-first authorship**: max 2, requires justification and EIC approval.
82
+ - **Proof turnaround**: 24-48 hours; only critical accuracy corrections allowed.
83
+ - **Self-archiving**: 12-month embargo for accepted manuscripts.
84
+ - **Figures**: line art minimum 1200 dpi; photographs minimum 300 dpi.
85
+ - Tables must be created in Word (NOT Excel).
86
+ - Running head maximum 45 characters including spaces.
@@ -0,0 +1,197 @@
1
+ # Journal Profile: JACC: Advances
2
+
3
+ ## Journal Identity
4
+
5
+ - **Full name**: JACC: Advances
6
+ - **Abbreviation**: JACC Adv
7
+ - **Publisher**: Elsevier (on behalf of the American College of Cardiology)
8
+ - **ISSN**: 2772-963X (online; full open access, no print ISSN)
9
+ - **Frequency**: Monthly
10
+ - **Impact Factor**: Not yet indexed (Web of Science indexing pending as of audit date)
11
+ - **Open Access**: Full Gold OA — APC USD 3,024 (Original Research / Reviews / Methodology / Expert Panel); USD 1,300 (Research Letters / Brief Reports). 10% discount for ACC members and early-career authors (≤10 years post-training); 50% discount for all authors from developing countries.
12
+ - **Acceptance rate**: Not published; broadly estimated 25–35% for Original Research within target scope
13
+ - **Peer review**: Single-blind; statistical review applied selectively (more frequent for methodology-heavy submissions)
14
+
15
+ ## Manuscript Types and Word Limits
16
+
17
+ | Type | Body Word Limit | Abstract | References | Figures/Tables |
18
+ |------|----------------|----------|------------|----------------|
19
+ | Original Research Paper | 5,000 words (text + refs + figure legends combined) | 250 words (structured) | included in 5,000 | not separately capped |
20
+ | State-of-the-Art Review | 10,000 words | 150 words (unstructured) | included in 10,000 | not separately capped |
21
+ | Methodology Corner | 5,000 words | 250 words (structured) | included in 5,000 | not separately capped |
22
+ | Brief Report | 1,200 words | None | not specified | ≤1 simple figure (≤2 parts) OR 1 table |
23
+ | Research Letter | 1,000 words | None | not specified | ≤1 simple figure (≤2 parts) OR 1 table |
24
+ | Viewpoint | 2,000 words | None | not specified | ≤1 simple figure (≤2 parts) OR 1 table |
25
+ | Editorial Comment | 1,500 words | None | not specified | not specified |
26
+ | JACC: Advances Expert Panel | ≤10,000 or ≤5,000 (per invitation) | 150 words (unstructured) | varies | varies |
27
+
28
+ The 5,000-word cap for Original Research includes text, references, and figure legends combined — tighter than most cardiology peers; trim aggressively before initial submission.
29
+
30
+ ---
31
+
32
+ ## Abstract Requirements
33
+
34
+ **Structured abstract for Original Research, 250 words maximum, with 4 explicit headings:**
35
+
36
+ ```
37
+ Background: [Context and knowledge gap]
38
+ Objectives: [Specific aim of the study]
39
+ Methods: [Design, setting, population, exposures, outcomes, analytic approach]
40
+ Results: [Primary results with effect sizes, 95% CIs, P values; N analyzed]
41
+ Conclusions: [Direct answer to objective with clinical/translational implication]
42
+ ```
43
+
44
+ The 4-heading structure (**Background / Objectives / Methods / Results / Conclusions**) differs slightly from Circulation's 4-heading Background / Methods / Results / Conclusions — JACC: Advances inserts an explicit **Objectives** heading between Background and Methods. Reviewers and the editorial system will reject submissions that omit Objectives.
45
+
46
+ ---
47
+
48
+ ## Required Journal-Specific Elements
49
+
50
+ ### 1. Central Illustration
51
+
52
+ Strongly encouraged for all Original Research. A single panel that conveys the main scientific message — typically a graphical summary combining cohort, key finding (forest plot or Kaplan-Meier), and interpretive caption. Counts toward figure cap.
53
+
54
+ ### 2. Highlights / Key Points (recommended)
55
+
56
+ Three to five bullet points summarizing the principal contribution at submission.
57
+
58
+ ### 3. Article Information
59
+
60
+ - Affiliations: department, institution, city, country (numbered superscripts)
61
+ - Corresponding author: full contact details
62
+ - Funding: complete disclosure with grant identifiers
63
+ - Disclosures: per-author conflicts of interest (ICMJE form)
64
+ - Data and code availability statement
65
+ - Acknowledgments separated from disclosures
66
+
67
+ ---
68
+
69
+ ## Required Sections (Original Research)
70
+
71
+ 1. **Introduction** — 2–4 paragraphs ending in a clearly stated objective. JACC: Advances editors tolerate broader scoping than JACC main but still want a tight knowledge-gap framing.
72
+ 2. **Methods**
73
+ - Ethics: IRB approval with institution name and waiver status
74
+ - Study design, setting, population, eligibility criteria, dates of enrollment
75
+ - Exposures / interventions
76
+ - Outcomes: primary, secondary, and exploratory clearly distinguished
77
+ - Statistical analysis: software (with versions), tests, sample-size or power note, missing-data handling, multiplicity adjustment, sensitivity analyses
78
+ 3. **Results** — STROBE/CONSORT flow first; primary outcome before secondary
79
+ 4. **Discussion** — 4–6 paragraphs; dedicated Strengths and Limitations sub-paragraphs; conclude with implications and future directions
80
+ 5. **Conclusions** — brief (2–3 sentences); avoid overclaiming, especially for small-event composite outcomes
81
+
82
+ ---
83
+
84
+ ## Statistical Reporting
85
+
86
+ - Exact P values to 3 decimal places (e.g., P = 0.032); use P < 0.001 below threshold
87
+ - 95% CI for all primary effect estimates
88
+ - Effect sizes appropriate to design (HR, sHR, OR, mean difference, AUC)
89
+ - Proportional-hazards assumption check (Schoenfeld) when Cox is used
90
+ - Competing-risks framework (Fine–Gray) when non-CV death competes with CV endpoint
91
+ - Pre-specified sensitivity analyses for major analytic choices (missing data, alternative cutpoints, exposure misclassification)
92
+ - Software and version must be reported
93
+ - For observational cohort: STROBE reporting checklist as supplement, even if not requested in submission portal
94
+
95
+ ---
96
+
97
+ ## Figures
98
+
99
+ - **No hard cap stated** for Original Research figure count (but tight 5,000-word cap discourages excess)
100
+ - **Brief Reports / Research Letters / Viewpoints**: maximum 1 simple figure (≤2 parts) OR 1 table
101
+ - Resolution: 300 DPI minimum
102
+ - Format: TIFF, EPS, PDF, or high-quality PNG
103
+ - Color: free (full OA model)
104
+ - Central Illustration: 1 figure, square or landscape, conveying main message
105
+ - Supplementary material: unlimited online-only supplement
106
+
107
+ ---
108
+
109
+ ## Common Rejection Reasons
110
+
111
+ 1. **Insufficient novelty within CKM / cardio-metabolic space** — JACC: Advances welcomes incremental contributions but expects a clear delta versus existing JACC family content
112
+ 2. **Methodologic gaps** — missing PH check for Cox, missing competing-risks framework when applicable, missing sensitivity analyses
113
+ 3. **Overclaiming on small-event composite endpoints** — wide CI estimates narrated without "exploratory" or "hypothesis-generating" qualifiers
114
+ 4. **Cohort selection bias unacknowledged** — single-center screening cohorts must explicitly characterize selection direction
115
+ 5. **5,000-word cap violation** — failing to combine text + refs + legends within the cap is the single most common pre-review desk reject reason
116
+ 6. **Mismatch between Abstract Objectives and Conclusions** — JACC: Advances editors specifically check this alignment
117
+ 7. **AI policy non-compliance** — undisclosed AI use in writing/editing, or attempts to fabricate AI-generated images
118
+
119
+ ---
120
+
121
+ ## Cover Letter
122
+
123
+ Must include:
124
+ - Brief statement of novelty and clinical significance (2–3 sentences)
125
+ - Confirmation manuscript is not under consideration elsewhere
126
+ - Confirmation all authors meet ICMJE criteria
127
+ - Disclosure of related manuscripts (same cohort, same group)
128
+ - Suggested reviewers (3–5; the senior PI should curate)
129
+ - AI disclosure statement aligned with the in-manuscript declaration
130
+
131
+ ---
132
+
133
+ ## AI Writing Disclosure Policy
134
+
135
+ - **Requirement level**: Required (Elsevier publisher-level policy applies; the JACC: Advances Guide for Authors does not display a journal-specific AI policy as of audit date)
136
+ - **Permitted scope**: AI/LLM tools may be used for language editing, structural review, and internal consistency checks; AI cannot be listed as an author; authorship implies responsibilities that can only be attributed to and performed by humans
137
+ - **Disclosure location**: A separate "Declaration of generative AI and AI-assisted technologies in the writing process" section inserted **immediately above the references**
138
+ - **AI-generated images**: Elsevier does not permit the use of generative AI or AI-assisted tools to create or alter images in submitted manuscripts
139
+ - **Grammar/spell-check exception**: Basic checks of grammar, spelling and punctuation need no declaration
140
+ - **Policy URL**: https://www.elsevier.com/about/policies-and-standards/the-use-of-generative-ai-and-ai-assisted-technologies-in-writing-for-elsevier
141
+
142
+ ---
143
+
144
+ ## Submission Portal
145
+
146
+ https://www.jaccsubmit-advances.org
147
+
148
+ ---
149
+
150
+ ## Author Guidelines URL
151
+
152
+ https://www.sciencedirect.com/journal/jacc-advances/publish/guide-for-authors
153
+
154
+ ---
155
+
156
+ ## Positioning
157
+
158
+ | Criterion | JACC: Advances | JACC main | JACC: Asia | EJPC |
159
+ |-----------|----------------|-----------|------------|------|
160
+ | **Society** | ACC | ACC | ACC (Asia-Pacific focus) | ESC/EAPC |
161
+ | **Impact Factor** | not indexed yet | ~22 | not indexed yet | ~8 |
162
+ | **Open Access** | Full Gold OA ($3,024) | Hybrid | Full Gold OA | Hybrid |
163
+ | **Geographic stance** | Global, no regional anchor | Global, NA-centric | Asia-Pacific anchor | Europe-centric |
164
+ | **Event-count tolerance** | Moderate (welcomes exploratory framings with adequate caveats) | High (expects definitive outcomes) | Moderate (Asia-Pacific data privileged) | Moderate (prevention-focused) |
165
+ | **Submission angle** | "Novel framework application or extension of CKM/CV evidence" | "Practice-changing or guideline-shifting finding" | "Asia-Pacific cardiovascular evidence" | "Cardiovascular prevention, rehabilitation, or epidemiology" |
166
+ | **Abstract style** | 4-heading (Background/Objectives/Methods/Results/Conclusions, 250 words) | Unstructured 250 words | Same as JACC: Advances | 4-heading (Aims/Methods/Results/Conclusion, 250 words) |
167
+ | **Word cap (Original)** | 5,000 (incl. refs + legends) | 5,000 | 5,000 | 5,000 |
168
+ | **AI policy** | Elsevier publisher-level (no journal page) | ACC/Elsevier | ACC/Elsevier | OUP/ESC explicit on guidelines page |
169
+
170
+ **Choose JACC: Advances when:**
171
+ - AHA 2023 CKM framework or other society-aligned framework application
172
+ - Korean / non-Western cohort with broad generalizability narrative (not Asia-specific anchor)
173
+ - Observational cohort with modest event count that needs "exploratory but rigorous" reception
174
+ - Authors who value Gold OA and ACC ecosystem visibility over JCR-indexed IF (transitional period)
175
+
176
+ **Choose JACC main instead when:**
177
+ - Multicenter, large-event-count, practice-changing finding
178
+ - Findings likely to be cited in ACC/AHA guidelines within 1–2 years
179
+ - Higher IF requirement (e.g., faculty promotion tracks)
180
+
181
+ **Choose JACC: Asia instead when:**
182
+ - Asia-Pacific regional contribution is the dominant framing (not "first Korean ___")
183
+ - Asia-Pacific healthcare-system policy implications are central
184
+
185
+ **Choose EJPC instead when:**
186
+ - Primary prevention angle is dominant
187
+ - ESC/EAPC ecosystem reach matters more than ACC reach
188
+ - Manuscript needs sponsor society alignment with European preventive cardiology community
189
+
190
+ ---
191
+
192
+ ## Verification Notes
193
+
194
+ Audit performed 2026-05-20. Sources opened:
195
+ - Homepage: https://www.sciencedirect.com/journal/jacc-advances (ISSN, EIC, APC, scope)
196
+ - Guide for Authors: https://www.sciencedirect.com/journal/jacc-advances/publish/guide-for-authors (article types, word limits, abstract structure, references, figures, submission portal)
197
+ - Elsevier publisher AI policy: https://www.elsevier.com/about/policies-and-standards/the-use-of-generative-ai-and-ai-assisted-technologies-in-writing-for-elsevier (AI policy verbatim source)