medsci-skills 4.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (702) hide show
  1. package/LICENSE +50 -0
  2. package/README.md +602 -0
  3. package/README_FIRST.md +27 -0
  4. package/bin/medsci-skills.js +159 -0
  5. package/installers/install-macos.command +19 -0
  6. package/installers/install-windows.cmd +26 -0
  7. package/installers/install-windows.ps1 +17 -0
  8. package/installers/install.py +218 -0
  9. package/metadata/skills_catalog.json +452 -0
  10. package/package.json +48 -0
  11. package/skills/academic-aio/SKILL.md +408 -0
  12. package/skills/academic-aio/references/case_studies/kjr_mllm_2025.md +82 -0
  13. package/skills/academic-aio/references/checklists/AIO_GENERAL.md +354 -0
  14. package/skills/academic-aio/references/journal_summarybox_templates.yaml +126 -0
  15. package/skills/academic-aio/references/oac_funding_checklist.yaml +129 -0
  16. package/skills/academic-aio/references/reporting_guideline_mapping.md +39 -0
  17. package/skills/academic-aio/references/schema_markup_templates/CodeRepository.jsonld +32 -0
  18. package/skills/academic-aio/references/schema_markup_templates/Dataset.jsonld +36 -0
  19. package/skills/academic-aio/references/schema_markup_templates/Person.jsonld +30 -0
  20. package/skills/academic-aio/references/schema_markup_templates/README.md +43 -0
  21. package/skills/academic-aio/references/schema_markup_templates/ScholarlyArticle.jsonld +55 -0
  22. package/skills/academic-aio/scripts/batch_metadata_audit.py +169 -0
  23. package/skills/academic-aio/scripts/validate_schema.py +118 -0
  24. package/skills/academic-aio/skill.yml +36 -0
  25. package/skills/academic-aio/templates/aio_audit_checklist.md.j2 +108 -0
  26. package/skills/add-journal/SKILL.md +482 -0
  27. package/skills/add-journal/skill.yml +33 -0
  28. package/skills/analyze-stats/SKILL.md +598 -0
  29. package/skills/analyze-stats/references/analysis_guides/missing_data.md +109 -0
  30. package/skills/analyze-stats/references/analysis_guides/nhis_icd10_mapping.md +247 -0
  31. package/skills/analyze-stats/references/analysis_guides/propensity_score.md +132 -0
  32. package/skills/analyze-stats/references/analysis_guides/regression.md +115 -0
  33. package/skills/analyze-stats/references/analysis_guides/repeated_measures.md +160 -0
  34. package/skills/analyze-stats/references/analysis_guides/survey_weighted.md +366 -0
  35. package/skills/analyze-stats/references/analysis_guides/test_selection.md +86 -0
  36. package/skills/analyze-stats/references/style/figure_style.mplstyle +69 -0
  37. package/skills/analyze-stats/references/style/theme_publication.R +147 -0
  38. package/skills/analyze-stats/references/table-standards/journal-profiles/ajr.yaml +51 -0
  39. package/skills/analyze-stats/references/table-standards/journal-profiles/european_radiology.yaml +55 -0
  40. package/skills/analyze-stats/references/table-standards/journal-profiles/jama.yaml +66 -0
  41. package/skills/analyze-stats/references/table-standards/journal-profiles/lancet.yaml +57 -0
  42. package/skills/analyze-stats/references/table-standards/journal-profiles/nejm.yaml +51 -0
  43. package/skills/analyze-stats/references/table-standards/journal-profiles/radiology.yaml +66 -0
  44. package/skills/analyze-stats/references/table-standards/table-standards.md +287 -0
  45. package/skills/analyze-stats/references/table-standards/table-types/diagnostic_accuracy.md +36 -0
  46. package/skills/analyze-stats/references/table-standards/table-types/meta_analysis.md +58 -0
  47. package/skills/analyze-stats/references/table-standards/table-types/model_comparison.md +36 -0
  48. package/skills/analyze-stats/references/table-standards/table-types/regression_results.md +50 -0
  49. package/skills/analyze-stats/references/table-standards/table-types/table1_demographics.md +51 -0
  50. package/skills/analyze-stats/references/table-standards/tool-comparison.md +79 -0
  51. package/skills/analyze-stats/references/templates/agreement_analysis.py +436 -0
  52. package/skills/analyze-stats/references/templates/dca_plot.R +237 -0
  53. package/skills/analyze-stats/references/templates/diagnostic_accuracy.py +401 -0
  54. package/skills/analyze-stats/references/templates/dta_meta_analysis.R +384 -0
  55. package/skills/analyze-stats/references/templates/forest_plot.py +412 -0
  56. package/skills/analyze-stats/references/templates/likert_summary.py +356 -0
  57. package/skills/analyze-stats/references/templates/meta_analysis.R +365 -0
  58. package/skills/analyze-stats/references/templates/propensity_score.py +478 -0
  59. package/skills/analyze-stats/references/templates/regression.py +425 -0
  60. package/skills/analyze-stats/references/templates/repeated_measures.py +434 -0
  61. package/skills/analyze-stats/references/templates/sample_size.R +382 -0
  62. package/skills/analyze-stats/references/templates/survey_weighted_analysis.py +411 -0
  63. package/skills/analyze-stats/references/templates/survival_analysis.py +325 -0
  64. package/skills/analyze-stats/references/templates/table1_demographics.py +287 -0
  65. package/skills/analyze-stats/scripts/check_generated_code.py +335 -0
  66. package/skills/analyze-stats/skill.yml +38 -0
  67. package/skills/analyze-stats/tests/fixtures/gen_bad.R +16 -0
  68. package/skills/analyze-stats/tests/fixtures/gen_bad.py +24 -0
  69. package/skills/analyze-stats/tests/fixtures/gen_clean.py +21 -0
  70. package/skills/analyze-stats/tests/test_generated_code.sh +59 -0
  71. package/skills/analyze-stats/tests/test_survival_template.sh +53 -0
  72. package/skills/author-strategy/SKILL.md +117 -0
  73. package/skills/author-strategy/analyze_patterns.py +303 -0
  74. package/skills/author-strategy/fetch_pubmed.py +374 -0
  75. package/skills/author-strategy/skill.yml +34 -0
  76. package/skills/batch-cohort/SKILL.md +223 -0
  77. package/skills/batch-cohort/references/base_template_knhanes.R +210 -0
  78. package/skills/batch-cohort/references/batch_template_generator.R +222 -0
  79. package/skills/batch-cohort/references/variable_coding_registry.md +136 -0
  80. package/skills/batch-cohort/skill.yml +35 -0
  81. package/skills/calc-sample-size/SKILL.md +491 -0
  82. package/skills/calc-sample-size/references/formulas.md +655 -0
  83. package/skills/calc-sample-size/references/observational_cohort.md +49 -0
  84. package/skills/calc-sample-size/skill.yml +51 -0
  85. package/skills/check-reporting/SKILL.md +534 -0
  86. package/skills/check-reporting/references/LICENSES.md +41 -0
  87. package/skills/check-reporting/references/checklists/AMSTAR2.md +54 -0
  88. package/skills/check-reporting/references/checklists/ARRIVE_2.md +234 -0
  89. package/skills/check-reporting/references/checklists/CARE.md +102 -0
  90. package/skills/check-reporting/references/checklists/CLAIM_2024.md +128 -0
  91. package/skills/check-reporting/references/checklists/CLEAR.md +113 -0
  92. package/skills/check-reporting/references/checklists/CONSORT.md +86 -0
  93. package/skills/check-reporting/references/checklists/COSMIN_RoB.md +136 -0
  94. package/skills/check-reporting/references/checklists/GRRAS.md +61 -0
  95. package/skills/check-reporting/references/checklists/MI_CLEAR_LLM.md +167 -0
  96. package/skills/check-reporting/references/checklists/MOOSE.md +85 -0
  97. package/skills/check-reporting/references/checklists/NOS.md +88 -0
  98. package/skills/check-reporting/references/checklists/PRISMA_2020.md +135 -0
  99. package/skills/check-reporting/references/checklists/PRISMA_DTA.md +36 -0
  100. package/skills/check-reporting/references/checklists/PRISMA_P.md +56 -0
  101. package/skills/check-reporting/references/checklists/PROBAST.md +75 -0
  102. package/skills/check-reporting/references/checklists/PROBAST_AI.md +130 -0
  103. package/skills/check-reporting/references/checklists/QUADAS2.md +77 -0
  104. package/skills/check-reporting/references/checklists/QUADAS_C.md +131 -0
  105. package/skills/check-reporting/references/checklists/ROBINS_E.md +179 -0
  106. package/skills/check-reporting/references/checklists/ROBINS_I.md +87 -0
  107. package/skills/check-reporting/references/checklists/ROBIS.md +114 -0
  108. package/skills/check-reporting/references/checklists/ROB_ME.md +126 -0
  109. package/skills/check-reporting/references/checklists/RoB2.md +79 -0
  110. package/skills/check-reporting/references/checklists/RoB_NMA.md +96 -0
  111. package/skills/check-reporting/references/checklists/SPIRIT.md +112 -0
  112. package/skills/check-reporting/references/checklists/SQUIRE_2.md +68 -0
  113. package/skills/check-reporting/references/checklists/STARD.md +129 -0
  114. package/skills/check-reporting/references/checklists/STARD_AI.md +211 -0
  115. package/skills/check-reporting/references/checklists/STROBE.md +80 -0
  116. package/skills/check-reporting/references/checklists/SWiM.md +33 -0
  117. package/skills/check-reporting/references/checklists/TRIPOD.md +157 -0
  118. package/skills/check-reporting/references/checklists/TRIPOD_AI.md +140 -0
  119. package/skills/check-reporting/references/step4c_registration_timing.md +93 -0
  120. package/skills/check-reporting/references/step4d_prisma_figure_audit.md +137 -0
  121. package/skills/check-reporting/scripts/check_checklist_exists.py +183 -0
  122. package/skills/check-reporting/scripts/check_checklist_version.py +168 -0
  123. package/skills/check-reporting/scripts/check_framework_naming.py +206 -0
  124. package/skills/check-reporting/scripts/check_prisma_figure.py +209 -0
  125. package/skills/check-reporting/scripts/prisma_cascade_check.py +274 -0
  126. package/skills/check-reporting/skill.yml +41 -0
  127. package/skills/check-reporting/tests/fixtures/framework_bad.md +8 -0
  128. package/skills/check-reporting/tests/fixtures/framework_clean.md +7 -0
  129. package/skills/check-reporting/tests/test_checklist_fail_fast.sh +77 -0
  130. package/skills/check-reporting/tests/test_checklist_version.sh +72 -0
  131. package/skills/check-reporting/tests/test_framework_naming.sh +45 -0
  132. package/skills/check-reporting/tests/test_prisma_cascade.sh +104 -0
  133. package/skills/clean-data/SKILL.md +180 -0
  134. package/skills/clean-data/references/cleaning_patterns.md +299 -0
  135. package/skills/clean-data/references/profiling_template.py +304 -0
  136. package/skills/clean-data/scripts/check_structural_zero.py +174 -0
  137. package/skills/clean-data/skill.yml +35 -0
  138. package/skills/clean-data/tests/fixtures/smoking.csv +8 -0
  139. package/skills/clean-data/tests/test_structural_zero.sh +49 -0
  140. package/skills/cross-national/SKILL.md +264 -0
  141. package/skills/cross-national/skill.yml +37 -0
  142. package/skills/define-variables/SKILL.md +146 -0
  143. package/skills/define-variables/references/common_definitions.md +190 -0
  144. package/skills/define-variables/skill.yml +34 -0
  145. package/skills/define-variables/templates/variable_operationalization.md +64 -0
  146. package/skills/deidentify/SKILL.md +203 -0
  147. package/skills/deidentify/deidentify.py +1224 -0
  148. package/skills/deidentify/locales/_template.json +45 -0
  149. package/skills/deidentify/locales/au.json +43 -0
  150. package/skills/deidentify/locales/ca.json +44 -0
  151. package/skills/deidentify/locales/cn.json +47 -0
  152. package/skills/deidentify/locales/de.json +48 -0
  153. package/skills/deidentify/locales/fr.json +48 -0
  154. package/skills/deidentify/locales/in.json +48 -0
  155. package/skills/deidentify/locales/jp.json +48 -0
  156. package/skills/deidentify/locales/kr.json +48 -0
  157. package/skills/deidentify/locales/uk.json +45 -0
  158. package/skills/deidentify/locales/us.json +43 -0
  159. package/skills/deidentify/references/date_shift_guide.md +82 -0
  160. package/skills/deidentify/references/hipaa_18_identifiers.md +48 -0
  161. package/skills/deidentify/references/korean_phi_patterns.md +135 -0
  162. package/skills/deidentify/skill.yml +43 -0
  163. package/skills/deidentify/tests/README.md +26 -0
  164. package/skills/deidentify/tests/test_clean.csv +16 -0
  165. package/skills/deidentify/tests/test_edge_cases.csv +11 -0
  166. package/skills/deidentify/tests/test_phi_korean.csv +11 -0
  167. package/skills/design-ai-benchmarking/SKILL.md +214 -0
  168. package/skills/design-ai-benchmarking/references/benchmark_export_schema.json +69 -0
  169. package/skills/design-ai-benchmarking/references/elicitation_rubric_template.md +37 -0
  170. package/skills/design-ai-benchmarking/skill.yml +38 -0
  171. package/skills/design-study/SKILL.md +298 -0
  172. package/skills/design-study/skill.yml +33 -0
  173. package/skills/fill-icmje-coi/SKILL.md +216 -0
  174. package/skills/fill-icmje-coi/scripts/fill_icmje_coi.py +140 -0
  175. package/skills/fill-icmje-coi/skill.yml +35 -0
  176. package/skills/fill-icmje-coi/templates/icmje_coi_seed_synthetic.docx +0 -0
  177. package/skills/fill-protocol/SKILL.md +248 -0
  178. package/skills/fill-protocol/examples/example_irb_template.yaml +53 -0
  179. package/skills/fill-protocol/references/best_practices.md +121 -0
  180. package/skills/fill-protocol/scripts/doc_to_docx.py +111 -0
  181. package/skills/fill-protocol/scripts/fill_form.py +611 -0
  182. package/skills/fill-protocol/scripts/inspect_template.py +61 -0
  183. package/skills/fill-protocol/setup.sh +162 -0
  184. package/skills/fill-protocol/skill.yml +37 -0
  185. package/skills/find-cohort-gap/SKILL.md +309 -0
  186. package/skills/find-cohort-gap/references/cohort_profile_template.md +93 -0
  187. package/skills/find-cohort-gap/references/onepager_template.md +84 -0
  188. package/skills/find-cohort-gap/references/pattern_scoring_rubric.md +169 -0
  189. package/skills/find-cohort-gap/references/saturation_query_templates.md +143 -0
  190. package/skills/find-cohort-gap/skill.yml +35 -0
  191. package/skills/find-journal/POLICY.md +87 -0
  192. package/skills/find-journal/SKILL.md +340 -0
  193. package/skills/find-journal/references/journal_profiles/AJNR.md +29 -0
  194. package/skills/find-journal/references/journal_profiles/AJR.md +30 -0
  195. package/skills/find-journal/references/journal_profiles/Abdominal_Radiology.md +30 -0
  196. package/skills/find-journal/references/journal_profiles/Academic_Radiology.md +30 -0
  197. package/skills/find-journal/references/journal_profiles/Annals_of_Internal_Medicine.md +33 -0
  198. package/skills/find-journal/references/journal_profiles/Artificial_Intelligence_in_Medicine.md +28 -0
  199. package/skills/find-journal/references/journal_profiles/BMC_Medicine.md +31 -0
  200. package/skills/find-journal/references/journal_profiles/British_Journal_of_Radiology.md +39 -0
  201. package/skills/find-journal/references/journal_profiles/CVIR.md +30 -0
  202. package/skills/find-journal/references/journal_profiles/Chest.md +39 -0
  203. package/skills/find-journal/references/journal_profiles/Clinical_Radiology.md +30 -0
  204. package/skills/find-journal/references/journal_profiles/Clinical_and_Molecular_Hepatology.md +32 -0
  205. package/skills/find-journal/references/journal_profiles/Diabetes_Metabolism_Journal.md +36 -0
  206. package/skills/find-journal/references/journal_profiles/Diagnostic_and_Interventional_Radiology.md +32 -0
  207. package/skills/find-journal/references/journal_profiles/Endocrinology_and_Metabolism.md +37 -0
  208. package/skills/find-journal/references/journal_profiles/European_Journal_of_Preventive_Cardiology.md +39 -0
  209. package/skills/find-journal/references/journal_profiles/European_Radiology.md +29 -0
  210. package/skills/find-journal/references/journal_profiles/Hepatology_Communications.md +40 -0
  211. package/skills/find-journal/references/journal_profiles/Hepatology_International.md +37 -0
  212. package/skills/find-journal/references/journal_profiles/IEEE_JBHI.md +28 -0
  213. package/skills/find-journal/references/journal_profiles/IEEE_TMI.md +28 -0
  214. package/skills/find-journal/references/journal_profiles/INSI.md +29 -0
  215. package/skills/find-journal/references/journal_profiles/Investigative_Radiology.md +25 -0
  216. package/skills/find-journal/references/journal_profiles/JACC_Advances.md +41 -0
  217. package/skills/find-journal/references/journal_profiles/JACC_Asia.md +30 -0
  218. package/skills/find-journal/references/journal_profiles/JACR.md +28 -0
  219. package/skills/find-journal/references/journal_profiles/JAMA.md +40 -0
  220. package/skills/find-journal/references/journal_profiles/JAMA_Network_Open.md +30 -0
  221. package/skills/find-journal/references/journal_profiles/JCSM.md +39 -0
  222. package/skills/find-journal/references/journal_profiles/JKMS.md +32 -0
  223. package/skills/find-journal/references/journal_profiles/JMIR.md +29 -0
  224. package/skills/find-journal/references/journal_profiles/JMIR_Medical_Education.md +29 -0
  225. package/skills/find-journal/references/journal_profiles/JNIS.md +35 -0
  226. package/skills/find-journal/references/journal_profiles/JVIR.md +31 -0
  227. package/skills/find-journal/references/journal_profiles/Journal_of_Biomedical_Informatics.md +29 -0
  228. package/skills/find-journal/references/journal_profiles/Journal_of_Clinical_Endocrinology_and_Metabolism.md +40 -0
  229. package/skills/find-journal/references/journal_profiles/Journal_of_Magnetic_Resonance_Imaging.md +30 -0
  230. package/skills/find-journal/references/journal_profiles/Journal_of_Nuclear_Medicine.md +31 -0
  231. package/skills/find-journal/references/journal_profiles/Journal_of_Stroke.md +32 -0
  232. package/skills/find-journal/references/journal_profiles/KJR.md +38 -0
  233. package/skills/find-journal/references/journal_profiles/Korean_Circulation_Journal.md +38 -0
  234. package/skills/find-journal/references/journal_profiles/Korean_Journal_of_Internal_Medicine.md +36 -0
  235. package/skills/find-journal/references/journal_profiles/Lancet_Diabetes_and_Endocrinology.md +40 -0
  236. package/skills/find-journal/references/journal_profiles/Lancet_Gastroenterology_and_Hepatology.md +49 -0
  237. package/skills/find-journal/references/journal_profiles/Lancet_Infectious_Diseases.md +38 -0
  238. package/skills/find-journal/references/journal_profiles/Lancet_Neurology.md +39 -0
  239. package/skills/find-journal/references/journal_profiles/Lancet_Oncology.md +40 -0
  240. package/skills/find-journal/references/journal_profiles/Lancet_Psychiatry.md +38 -0
  241. package/skills/find-journal/references/journal_profiles/Lancet_Public_Health.md +30 -0
  242. package/skills/find-journal/references/journal_profiles/Lancet_Respiratory_Medicine.md +39 -0
  243. package/skills/find-journal/references/journal_profiles/Liver_International.md +33 -0
  244. package/skills/find-journal/references/journal_profiles/Medical_Image_Analysis.md +28 -0
  245. package/skills/find-journal/references/journal_profiles/NEJM.md +33 -0
  246. package/skills/find-journal/references/journal_profiles/Nature_Machine_Intelligence.md +31 -0
  247. package/skills/find-journal/references/journal_profiles/Nature_Medicine.md +39 -0
  248. package/skills/find-journal/references/journal_profiles/Neuroradiology.md +31 -0
  249. package/skills/find-journal/references/journal_profiles/Nutrition_Metabolism_and_Cardiovascular_Diseases.md +39 -0
  250. package/skills/find-journal/references/journal_profiles/PLOS_Medicine.md +32 -0
  251. package/skills/find-journal/references/journal_profiles/RYAI.md +28 -0
  252. package/skills/find-journal/references/journal_profiles/Radiology.md +29 -0
  253. package/skills/find-journal/references/journal_profiles/Skeletal_Radiology.md +31 -0
  254. package/skills/find-journal/references/journal_profiles/Stroke.md +37 -0
  255. package/skills/find-journal/references/journal_profiles/The_BMJ.md +31 -0
  256. package/skills/find-journal/references/journal_profiles/The_Lancet.md +31 -0
  257. package/skills/find-journal/references/journal_profiles/The_Lancet_Digital_Health.md +29 -0
  258. package/skills/find-journal/references/journal_profiles/World_Journal_of_Hepatology.md +53 -0
  259. package/skills/find-journal/references/journal_profiles/npj_Digital_Medicine.md +29 -0
  260. package/skills/find-journal/skill.yml +34 -0
  261. package/skills/fulltext-retrieval/SKILL.md +174 -0
  262. package/skills/fulltext-retrieval/fetch_oa.py +433 -0
  263. package/skills/fulltext-retrieval/pdf_to_md.py +160 -0
  264. package/skills/fulltext-retrieval/skill.yml +41 -0
  265. package/skills/generate-codebook/SKILL.md +155 -0
  266. package/skills/generate-codebook/references/codebook_schema.md +76 -0
  267. package/skills/generate-codebook/scripts/generate_codebook.py +278 -0
  268. package/skills/generate-codebook/skill.yml +35 -0
  269. package/skills/generate-codebook/tests/test_generate_codebook.sh +76 -0
  270. package/skills/grant-builder/SKILL.md +251 -0
  271. package/skills/grant-builder/skill.yml +34 -0
  272. package/skills/humanize/SKILL.md +251 -0
  273. package/skills/humanize/references/ai_patterns.md +571 -0
  274. package/skills/humanize/skill.yml +33 -0
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@@ -0,0 +1,604 @@
1
+ #!/usr/bin/env python3
2
+ """Reference template library for editable academic PPTX generation.
3
+
4
+ Design tokens (NAVY/TEAL/ORANGE/GRAY, Apple SD Gothic Neo) and 16:9 fixed
5
+ coordinate zones are defaults — adapt to journal/institution conventions
6
+ as needed. NO markdown parsing, NO `cur_top` cumulative tracking (both
7
+ produce drift artifacts).
8
+
9
+ Each slide is defined as structured data → rendered by a type-specific
10
+ template function (T_lead / T_text / T_table / T_image_right / T_two_col
11
+ / T_quote_slide / T_highlight_slide / T_metaphor_body / T_two_col_with_box
12
+ / T_table_two_col).
13
+
14
+ `build_demo_slides()` at the bottom demonstrates every template with
15
+ generic academic placeholder content; copy and replace with your own
16
+ content function for a real deck.
17
+
18
+ Speaker-note injection: `parse_notes()` reads a markdown script with
19
+ `## Slide N:` headers and maps sections back to slide indices. For an
20
+ existing deck where you only want to add notes (no design regeneration),
21
+ use the sibling `inject_speaker_notes.py` instead.
22
+
23
+ Mac PowerPoint compatibility — verify before delivery:
24
+ 1. TIFF images: `find ppt/media -iname '*.tif*'` → convert to PNG
25
+ 2. `<a:sp3d>` 3D bevels in rPr render as red outlines on Mac → strip
26
+ 3. `docProps/app.xml` Slides/Notes/HeadingPairs/TitlesOfParts must
27
+ match actual slide count
28
+ 4. `<a:srcRect>` values are 1/1000-percent (cap 100000) — never EMU
29
+
30
+ See `references/workflow-checklist.md` and the user-level rule
31
+ `~/.claude/rules/pptx-mac-compatibility.md` for the full checklist.
32
+ """
33
+
34
+ import os
35
+ import re
36
+ from pptx import Presentation
37
+ from pptx.util import Inches, Pt, Emu
38
+ from pptx.dml.color import RGBColor
39
+ from pptx.enum.text import PP_ALIGN, MSO_ANCHOR, MSO_AUTO_SIZE
40
+ from pptx.enum.shapes import MSO_SHAPE
41
+ from pptx.oxml.ns import qn
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+
43
+ # ── Design tokens ──────────────────────────────────────────────
44
+ NAVY = RGBColor(0x1B, 0x2A, 0x4A)
45
+ TEAL = RGBColor(0x00, 0x72, 0xB2)
46
+ ORANGE = RGBColor(0xD5, 0x5E, 0x00)
47
+ GRAY = RGBColor(0x33, 0x33, 0x33)
48
+ WHITE = RGBColor(0xFF, 0xFF, 0xFF)
49
+ LGRAY = RGBColor(0x99, 0x99, 0x99)
50
+ BG_BLUE = RGBColor(0xF0, 0xF7, 0xFF)
51
+ BG_YELLOW = RGBColor(0xFF, 0xF8, 0xE1)
52
+ SUB_BLUE = RGBColor(0x7B, 0xB8, 0xE0)
53
+
54
+ FONT = 'Apple SD Gothic Neo'
55
+ SW = Inches(13.333) # slide width
56
+ SH = Inches(7.5) # slide height
57
+ ML = Inches(0.8) # margin left
58
+ MR = Inches(0.8) # margin right
59
+ MT = Inches(0.5) # margin top
60
+ CW = SW - ML - MR # content width
61
+
62
+ # Fixed vertical zones
63
+ TITLE_Y = MT
64
+ TITLE_H = Inches(0.8)
65
+ SUB_Y = TITLE_Y + TITLE_H
66
+ SUB_H = Inches(0.5)
67
+ BODY_Y = SUB_Y + SUB_H + Inches(0.1) # ~1.9in from top
68
+ BODY_H = SH - BODY_Y - Inches(0.5) # fill to bottom margin
69
+
70
+
71
+ # ── Low-level helpers ──────────────────────────────────────────
72
+ def _bg(slide, color):
73
+ slide.background.fill.solid()
74
+ slide.background.fill.fore_color.rgb = color
75
+
76
+ def _text(slide, x, y, w, h, txt, sz=20, color=GRAY, bold=False,
77
+ align=PP_ALIGN.LEFT, auto_fit=False):
78
+ """Add a text box. Returns the shape."""
79
+ tb = slide.shapes.add_textbox(x, y, w, h)
80
+ tf = tb.text_frame
81
+ tf.word_wrap = True
82
+ if auto_fit:
83
+ tf.auto_size = MSO_AUTO_SIZE.TEXT_TO_FIT_SHAPE
84
+ p = tf.paragraphs[0]
85
+ p.alignment = align
86
+ _runs(p, txt, sz, color, bold)
87
+ return tb
88
+
89
+ def _runs(para, txt, sz, color, bold):
90
+ """Add text with **bold** inline markup support."""
91
+ parts = re.split(r'(\*\*.*?\*\*)', txt)
92
+ first = True
93
+ for part in parts:
94
+ if not part:
95
+ continue
96
+ is_b = part.startswith('**') and part.endswith('**')
97
+ clean = part.strip('*') if is_b else part
98
+ run = para.runs[0] if first and para.runs else para.add_run()
99
+ first = False
100
+ run.text = clean
101
+ run.font.size = Pt(sz)
102
+ run.font.color.rgb = NAVY if is_b else color
103
+ run.font.bold = bold or is_b
104
+ run.font.name = FONT
105
+
106
+ def _multiline(slide, x, y, w, h, lines, sz=20, color=GRAY, auto_fit=True):
107
+ """Add multi-line text box with bullet support."""
108
+ tb = slide.shapes.add_textbox(x, y, w, h)
109
+ tf = tb.text_frame
110
+ tf.word_wrap = True
111
+ if auto_fit:
112
+ tf.auto_size = MSO_AUTO_SIZE.TEXT_TO_FIT_SHAPE
113
+
114
+ first = True
115
+ for line in lines:
116
+ if not line.strip():
117
+ continue
118
+ if first:
119
+ p = tf.paragraphs[0]
120
+ first = False
121
+ else:
122
+ p = tf.add_paragraph()
123
+ p.space_before = Pt(6)
124
+
125
+ is_bullet = line.startswith('- ') or line.startswith('✓ ')
126
+ txt = line.lstrip('-✓ ').strip() if is_bullet else line.strip()
127
+
128
+ if line.strip().startswith('### '):
129
+ _runs(p, line.strip()[4:], sz + 2, TEAL, True)
130
+ else:
131
+ if is_bullet:
132
+ p.level = 0
133
+ _runs(p, txt, sz, color, False)
134
+ return tb
135
+
136
+ def _title_block(slide, title, subtitle=None, width=None):
137
+ """Standard title + teal underline + optional subtitle."""
138
+ w = width or CW
139
+ _text(slide, ML, TITLE_Y, w, TITLE_H, title, sz=28, color=NAVY, bold=True)
140
+ # Teal underline
141
+ bar = slide.shapes.add_shape(MSO_SHAPE.RECTANGLE,
142
+ ML, TITLE_Y + Inches(0.7), w, Inches(0.05))
143
+ bar.fill.solid()
144
+ bar.fill.fore_color.rgb = TEAL
145
+ bar.line.fill.background()
146
+
147
+ if subtitle:
148
+ _text(slide, ML, SUB_Y, w, SUB_H, subtitle, sz=22, color=TEAL)
149
+
150
+ def _table(slide, headers, rows, x, y, w, row_h=Inches(0.45)):
151
+ """Add a styled table."""
152
+ nr = len(rows) + 1
153
+ nc = len(headers)
154
+ if nc == 0:
155
+ return
156
+ shape = slide.shapes.add_table(nr, nc, x, y, w, row_h * nr)
157
+ tbl = shape.table
158
+
159
+ for j, h in enumerate(headers):
160
+ c = tbl.cell(0, j)
161
+ c.text = h.strip('*')
162
+ _cell_style(c, 15, WHITE, True, TEAL)
163
+
164
+ for i, row in enumerate(rows):
165
+ for j, val in enumerate(row):
166
+ if j >= nc:
167
+ break
168
+ c = tbl.cell(i + 1, j)
169
+ c.text = val.strip('*')
170
+ bg = RGBColor(0xF5, 0xF5, 0xF5) if i % 2 == 0 else WHITE
171
+ bld = val.strip().startswith('**')
172
+ _cell_style(c, 14, GRAY, bld, bg)
173
+
174
+ def _cell_style(cell, sz, color, bold, bg):
175
+ for p in cell.text_frame.paragraphs:
176
+ for r in p.runs:
177
+ r.font.size = Pt(sz)
178
+ r.font.color.rgb = color
179
+ r.font.bold = bold
180
+ r.font.name = FONT
181
+ cell.vertical_anchor = MSO_ANCHOR.MIDDLE
182
+ tcPr = cell._tc.get_or_add_tcPr()
183
+ sf = tcPr.makeelement(qn('a:solidFill'), {})
184
+ sf.append(sf.makeelement(qn('a:srgbClr'), {'val': str(bg)}))
185
+ tcPr.append(sf)
186
+
187
+ def _quote(slide, txt, x, y, w, h, sz=20):
188
+ """Blockquote with teal left bar + blue background."""
189
+ # Bar
190
+ bar = slide.shapes.add_shape(MSO_SHAPE.RECTANGLE, x, y, Inches(0.08), h)
191
+ bar.fill.solid(); bar.fill.fore_color.rgb = TEAL
192
+ bar.line.fill.background()
193
+ # Background
194
+ bg = slide.shapes.add_shape(MSO_SHAPE.RECTANGLE,
195
+ x + Inches(0.08), y, w - Inches(0.08), h)
196
+ bg.fill.solid(); bg.fill.fore_color.rgb = BG_BLUE
197
+ bg.line.fill.background()
198
+ # Text
199
+ _text(slide, x + Inches(0.3), y + Inches(0.1),
200
+ w - Inches(0.5), h - Inches(0.2), txt, sz=sz, auto_fit=True)
201
+
202
+ def _highlight(slide, lines, x, y, w, h):
203
+ """Yellow highlight box with orange border."""
204
+ box = slide.shapes.add_shape(MSO_SHAPE.ROUNDED_RECTANGLE, x, y, w, h)
205
+ box.fill.solid(); box.fill.fore_color.rgb = BG_YELLOW
206
+ box.line.color.rgb = ORANGE; box.line.width = Pt(2)
207
+ _multiline(slide, x + Inches(0.3), y + Inches(0.2),
208
+ w - Inches(0.6), h - Inches(0.4), lines, sz=18, auto_fit=True)
209
+
210
+ def _metaphor(slide, lines, x, y, w, h):
211
+ """Light-blue metaphor box with teal left bar."""
212
+ bar = slide.shapes.add_shape(MSO_SHAPE.RECTANGLE, x, y, Inches(0.08), h)
213
+ bar.fill.solid(); bar.fill.fore_color.rgb = TEAL
214
+ bar.line.fill.background()
215
+ bg = slide.shapes.add_shape(MSO_SHAPE.RECTANGLE,
216
+ x + Inches(0.08), y, w - Inches(0.08), h)
217
+ bg.fill.solid(); bg.fill.fore_color.rgb = BG_BLUE
218
+ bg.line.fill.background()
219
+ _multiline(slide, x + Inches(0.3), y + Inches(0.15),
220
+ w - Inches(0.6), h - Inches(0.3), lines, sz=17, auto_fit=True)
221
+
222
+ def _image(slide, path, x, y, w, h):
223
+ """Add image preserving aspect ratio, centered in box."""
224
+ if not os.path.exists(path):
225
+ print(f' WARNING: {path} not found')
226
+ return
227
+ from PIL import Image as PILImage
228
+ with PILImage.open(path) as img:
229
+ iw, ih = img.size
230
+ aspect = iw / ih
231
+ tw, th = int(w), int(h)
232
+ if tw / th > aspect:
233
+ fw, fh = int(th * aspect), th
234
+ else:
235
+ fw, fh = tw, int(tw / aspect)
236
+ ax = x + (tw - fw) // 2
237
+ ay = y + (th - fh) // 2
238
+ slide.shapes.add_picture(path, ax, ay, fw, fh)
239
+
240
+ def _slidenum(slide, n, total):
241
+ _text(slide, SW - Inches(1.2), SH - Inches(0.45), Inches(1.0), Inches(0.3),
242
+ f'{n} / {total}', sz=10, color=LGRAY, align=PP_ALIGN.RIGHT)
243
+
244
+
245
+ # ── Slide type templates ───────────────────────────────────────
246
+ def T_lead(prs, title, subtitle='', extra=''):
247
+ """Section divider: navy bg, centered white text."""
248
+ s = prs.slides.add_slide(prs.slide_layouts[6])
249
+ _bg(s, NAVY)
250
+ _text(s, ML, Inches(2.2), CW, Inches(1.2), title,
251
+ sz=40, color=WHITE, bold=True, align=PP_ALIGN.CENTER)
252
+ if subtitle:
253
+ _text(s, ML, Inches(3.6), CW, Inches(0.8), subtitle,
254
+ sz=24, color=SUB_BLUE, align=PP_ALIGN.CENTER)
255
+ if extra:
256
+ _text(s, ML, Inches(4.6), CW, Inches(1.0), extra,
257
+ sz=18, color=LGRAY, align=PP_ALIGN.CENTER)
258
+ return s
259
+
260
+ def T_text(prs, title, body_lines, subtitle=None):
261
+ """Title + bullet/text body. Most common type."""
262
+ s = prs.slides.add_slide(prs.slide_layouts[6])
263
+ _title_block(s, title, subtitle)
264
+ _multiline(s, ML, BODY_Y, CW, BODY_H, body_lines, sz=20)
265
+ return s
266
+
267
+ def T_table(prs, title, headers, rows, subtitle=None, body_before=None):
268
+ """Title + optional body text + table."""
269
+ s = prs.slides.add_slide(prs.slide_layouts[6])
270
+ _title_block(s, title, subtitle)
271
+ tbl_y = BODY_Y
272
+ if body_before:
273
+ _multiline(s, ML, BODY_Y, CW, Inches(1.5), body_before, sz=20)
274
+ tbl_y = BODY_Y + Inches(1.6)
275
+ _table(s, headers, rows, ML, tbl_y, CW)
276
+ return s
277
+
278
+ def T_image_right(prs, title, body_lines, img_path, img_pct=30, subtitle=None):
279
+ """Title + body on left, image on right."""
280
+ s = prs.slides.add_slide(prs.slide_layouts[6])
281
+ frac = img_pct / 100
282
+ tw = int(SW * (1 - frac) - ML - Inches(0.3))
283
+ iw = int(SW * frac)
284
+ ix = SW - iw
285
+
286
+ _title_block(s, title, subtitle, width=tw)
287
+ _multiline(s, ML, BODY_Y, tw, BODY_H, body_lines, sz=20)
288
+ _image(s, img_path, ix, Inches(0.2), iw, SH - Inches(0.4))
289
+ return s
290
+
291
+ def T_quote_slide(prs, title, quotes, body_after=None, img_path=None,
292
+ img_pct=30, subtitle=None):
293
+ """Title + blockquote(s). Optionally with image."""
294
+ s = prs.slides.add_slide(prs.slide_layouts[6])
295
+
296
+ if img_path:
297
+ frac = img_pct / 100
298
+ tw = int(SW * (1 - frac) - ML - Inches(0.3))
299
+ iw = int(SW * frac)
300
+ ix = SW - iw
301
+ _title_block(s, title, subtitle, width=tw)
302
+ _image(s, img_path, ix, Inches(0.2), iw, SH - Inches(0.4))
303
+ else:
304
+ tw = CW
305
+ _title_block(s, title, subtitle)
306
+
307
+ # Distribute quotes evenly in body area
308
+ n = len(quotes)
309
+ gap = Inches(0.15)
310
+ q_h = int((BODY_H - gap * (n - 1)) / n) if n else BODY_H
311
+
312
+ for i, q in enumerate(quotes):
313
+ qy = BODY_Y + (q_h + gap) * i
314
+ _quote(s, q, ML, qy, tw, q_h, sz=18)
315
+
316
+ if body_after:
317
+ _text(s, ML, SH - Inches(1.2), tw, Inches(0.6),
318
+ body_after, sz=16, color=GRAY)
319
+ return s
320
+
321
+ def T_two_col(prs, title, left_lines, right_lines, subtitle=None):
322
+ """Two-column layout."""
323
+ s = prs.slides.add_slide(prs.slide_layouts[6])
324
+ _title_block(s, title, subtitle)
325
+ cw = int((CW - Inches(0.5)) / 2)
326
+ gap = Inches(0.5)
327
+ _multiline(s, ML, BODY_Y, cw, BODY_H, left_lines, sz=18)
328
+ _multiline(s, ML + cw + gap, BODY_Y, cw, BODY_H, right_lines, sz=18)
329
+ return s
330
+
331
+ def T_two_col_with_box(prs, title, left_lines, right_lines, subtitle=None,
332
+ metaphor_col=None, metaphor_lines=None):
333
+ """Two-column with metaphor/highlight box in one column."""
334
+ s = prs.slides.add_slide(prs.slide_layouts[6])
335
+ _title_block(s, title, subtitle)
336
+ cw = int((CW - Inches(0.5)) / 2)
337
+ gap = Inches(0.5)
338
+
339
+ # Left column
340
+ if metaphor_col == 'left' and metaphor_lines:
341
+ _metaphor(s, metaphor_lines, ML, BODY_Y, cw, Inches(2.5))
342
+ _multiline(s, ML, BODY_Y + Inches(2.7), cw, BODY_H - Inches(2.7),
343
+ left_lines, sz=18)
344
+ else:
345
+ _multiline(s, ML, BODY_Y, cw, BODY_H, left_lines, sz=18)
346
+
347
+ # Right column
348
+ rx = ML + cw + gap
349
+ if metaphor_col == 'right' and metaphor_lines:
350
+ _metaphor(s, metaphor_lines, rx, BODY_Y, cw, Inches(2.5))
351
+ _multiline(s, rx, BODY_Y + Inches(2.7), cw, BODY_H - Inches(2.7),
352
+ right_lines, sz=18)
353
+ else:
354
+ _multiline(s, rx, BODY_Y, cw, BODY_H, right_lines, sz=18)
355
+ return s
356
+
357
+ def T_highlight_slide(prs, title, highlight_lines, subtitle=None,
358
+ body_before=None):
359
+ """Slide with prominent highlight box."""
360
+ s = prs.slides.add_slide(prs.slide_layouts[6])
361
+ _title_block(s, title, subtitle)
362
+ hy = BODY_Y
363
+ if body_before:
364
+ _multiline(s, ML, BODY_Y, CW, Inches(1.0), body_before, sz=20)
365
+ hy = BODY_Y + Inches(1.2)
366
+ _highlight(s, highlight_lines, ML, hy, CW, SH - hy - Inches(0.5))
367
+ return s
368
+
369
+ def T_metaphor_body(prs, title, body_lines, metaphor_lines, subtitle=None):
370
+ """Body text + metaphor box below."""
371
+ s = prs.slides.add_slide(prs.slide_layouts[6])
372
+ _title_block(s, title, subtitle)
373
+ mid = BODY_Y + BODY_H * 0.55
374
+ _multiline(s, ML, BODY_Y, CW, mid - BODY_Y - Inches(0.1),
375
+ body_lines, sz=20)
376
+ _metaphor(s, metaphor_lines, ML, mid, CW, SH - mid - Inches(0.5))
377
+ return s
378
+
379
+ def T_table_two_col(prs, title, left_lines, headers, rows, subtitle=None):
380
+ """Left text + right table."""
381
+ s = prs.slides.add_slide(prs.slide_layouts[6])
382
+ _title_block(s, title, subtitle)
383
+ cw = int((CW - Inches(0.5)) / 2)
384
+ gap = Inches(0.5)
385
+ _multiline(s, ML, BODY_Y, cw, BODY_H, left_lines, sz=18)
386
+ _table(s, headers, rows, ML + cw + gap, BODY_Y, cw)
387
+ return s
388
+
389
+
390
+ # ── Speaker notes ──────────────────────────────────────────────
391
+ def parse_notes(path):
392
+ with open(path, 'r', encoding='utf-8') as f:
393
+ content = f.read()
394
+ # Match either `## Slide N:` (English) or legacy `--- 슬라이드 N: ... ---`
395
+ pattern = r'(?:^##\s*Slide\s+(\d+)\s*:|---\s*슬라이드\s*(\d+)\s*:.*?---)'
396
+ matches = list(re.finditer(pattern, content, flags=re.MULTILINE))
397
+ notes = {}
398
+ for i, m in enumerate(matches):
399
+ num = int(m.group(1) or m.group(2))
400
+ start = m.end()
401
+ end = matches[i + 1].start() if i + 1 < len(matches) else len(content)
402
+ raw = content[start:end].strip()
403
+ # Clean
404
+ lines = []
405
+ for line in raw.split('\n'):
406
+ s = line.strip()
407
+ if s.startswith('## Part ') or s == '---' or s.startswith('```'):
408
+ continue
409
+ if s.startswith('*(') and s.endswith(')*'):
410
+ lines.append(f'[{s[2:-2].strip()}]')
411
+ else:
412
+ lines.append(s.replace('**', '').replace('*', ''))
413
+ text = re.sub(r'\n{3,}', '\n\n', '\n'.join(lines).strip())
414
+ if text:
415
+ notes[num] = text
416
+ return notes
417
+
418
+
419
+ # ── Demo: showcase every template ───────────────────────────────
420
+ def build_demo_slides(prs):
421
+ """Generic academic demo — one slide per template type.
422
+
423
+ Replace this function with your own content builder. Keep all content
424
+ as inline structured data (lists, dicts) — never parse markdown.
425
+ """
426
+ slides = []
427
+
428
+ # 1. Title (T_lead)
429
+ slides.append(T_lead(
430
+ prs,
431
+ 'Editable Academic PPTX — Template Showcase',
432
+ 'A python-pptx reference deck',
433
+ 'Speaker · Affiliation · Date'))
434
+
435
+ # 2. Section divider (T_lead)
436
+ slides.append(T_lead(
437
+ prs,
438
+ 'Section 1: Background',
439
+ 'Setting up the question'))
440
+
441
+ # 3. Bullet body (T_text)
442
+ slides.append(T_text(
443
+ prs,
444
+ 'Background',
445
+ ['- Disease X affects an estimated **N patients** worldwide.',
446
+ '- Standard imaging modality: **modality Y**.',
447
+ '- Existing limitations:',
448
+ ' - Inter-reader variability',
449
+ ' - Long acquisition time',
450
+ ' - Reader fatigue on volume studies'],
451
+ subtitle='Why this study matters'))
452
+
453
+ # 4. Two-column compare (T_two_col)
454
+ slides.append(T_two_col(
455
+ prs,
456
+ 'Conventional vs. Proposed Approach',
457
+ ['### Conventional',
458
+ '- Manual segmentation',
459
+ '- ~30 min per case',
460
+ '- Reader-dependent'],
461
+ ['### Proposed',
462
+ '- Deep-learning assisted',
463
+ '- ~3 min per case',
464
+ '- Standardized output'],
465
+ subtitle='Workflow comparison'))
466
+
467
+ # 5. Quote slide (T_quote_slide)
468
+ slides.append(T_quote_slide(
469
+ prs,
470
+ 'Prior Evidence',
471
+ ['"AI-assisted reading reduced inter-reader variability '
472
+ 'by 40% in a multi-center study." — Author et al., Journal Y, 2024',
473
+ '"External validation remains the principal gap in clinical '
474
+ 'translation of imaging AI." — Reviewer A, 2025']))
475
+
476
+ # 6. Table (T_table)
477
+ slides.append(T_table(
478
+ prs,
479
+ 'Cohort Characteristics',
480
+ ['Variable', 'Training (n=800)', 'Internal test (n=200)', 'External (n=300)'],
481
+ [['Age, mean (SD)', '62 (11)', '63 (10)', '60 (12)'],
482
+ ['Female, n (%)', '420 (52.5)', '105 (52.5)', '160 (53.3)'],
483
+ ['Disease prevalence', '38%', '40%', '35%'],
484
+ ['**Imaging vendor mix**', 'A/B/C', 'A/B/C', 'D/E']],
485
+ subtitle='Demographics across splits'))
486
+
487
+ # 7. Image-right (T_image_right) — pass empty path to skip image safely
488
+ slides.append(T_image_right(
489
+ prs,
490
+ 'Methods Pipeline',
491
+ ['- DICOM ingest with anonymization',
492
+ '- Preprocessing: resampling, normalization',
493
+ '- Model: 3D U-Net (or transformer variant)',
494
+ '- Output: probability map + binary mask',
495
+ '- QA: radiologist override loop'],
496
+ img_path='figures/pipeline.png', # replace with real asset
497
+ img_pct=35,
498
+ subtitle='From DICOM to decision'))
499
+
500
+ # 8. Highlight slide (T_highlight_slide)
501
+ slides.append(T_highlight_slide(
502
+ prs,
503
+ 'Primary Result',
504
+ ['**AUC = 0.92 (95% CI 0.89–0.95)** on external test set',
505
+ 'Sensitivity 0.88 · Specificity 0.91',
506
+ 'Non-inferior to senior reader (Δ AUC = 0.01, p = 0.78)'],
507
+ subtitle='Diagnostic performance',
508
+ body_before=['On the prospectively collected external cohort '
509
+ '(n = 300, 5 sites):']))
510
+
511
+ # 9. Metaphor body (T_metaphor_body)
512
+ slides.append(T_metaphor_body(
513
+ prs,
514
+ 'Interpretation',
515
+ ['- Performance preserved across vendor and protocol shifts.',
516
+ '- Calibration check: ECE = 0.04 → clinically usable.',
517
+ '- Failure modes concentrated in motion-degraded studies.'],
518
+ ['Think of the model as a **second reader** — fast, consistent, '
519
+ 'never tired — but still requiring a final human sign-off on '
520
+ 'edge cases.'],
521
+ subtitle='What it means in practice'))
522
+
523
+ # 10. Two-col with metaphor box (T_two_col_with_box)
524
+ slides.append(T_two_col_with_box(
525
+ prs,
526
+ 'Limitations and Mitigations',
527
+ ['### Limitations',
528
+ '- Single-modality input',
529
+ '- Retrospective external set',
530
+ '- No outcome data yet'],
531
+ ['### Planned next steps',
532
+ '- Multi-modal fusion',
533
+ '- Prospective registration',
534
+ '- 12-month outcome follow-up'],
535
+ metaphor_col='right',
536
+ metaphor_lines=['**Open question** — is diagnostic accuracy a '
537
+ 'sufficient endpoint, or do we need clinical '
538
+ 'utility evidence?'],
539
+ subtitle='Honest accounting'))
540
+
541
+ # 11. Table-two-col (T_table_two_col)
542
+ slides.append(T_table_two_col(
543
+ prs,
544
+ 'Comparison with Published Models',
545
+ ['### Take-aways',
546
+ '- Comparable AUC at lower compute',
547
+ '- Better calibration on minority subgroup',
548
+ '- Released checkpoint + DICOM-SR exporter'],
549
+ ['Model', 'AUC', 'Params'],
550
+ [['Baseline', '0.85', '11M'],
551
+ ['Prior SOTA', '0.91', '78M'],
552
+ ['**Ours**', '**0.92**', '**24M**']],
553
+ subtitle='Where this work sits'))
554
+
555
+ # 12. Take-home (T_text)
556
+ slides.append(T_text(
557
+ prs,
558
+ 'Take-Home Messages',
559
+ ['1. The model generalized to a **5-site external cohort** '
560
+ '(AUC 0.92).',
561
+ '2. Performance was **non-inferior to a senior reader**.',
562
+ '3. **Calibration and failure-mode transparency** were the '
563
+ 'features that earned clinician trust — not raw AUC.',
564
+ '4. Next: prospective validation tied to clinical outcomes.'],
565
+ subtitle='Three points to remember'))
566
+
567
+ return slides
568
+
569
+
570
+ # ── Main ────────────────────────────────────────────────────────
571
+ def main():
572
+ prs = Presentation()
573
+ prs.slide_width = SW
574
+ prs.slide_height = SH
575
+
576
+ print('Building demo slides...')
577
+ slides = build_demo_slides(prs)
578
+ total = len(slides)
579
+ print(f' {total} slides created')
580
+
581
+ # Slide numbers (skip lead/section-divider slides with solid bg)
582
+ for i, slide in enumerate(slides):
583
+ bg_type = slide.background.fill.type
584
+ is_lead = bg_type is not None and 'SOLID' in str(bg_type)
585
+ if not is_lead:
586
+ _slidenum(slide, i + 1, total)
587
+
588
+ # Optional speaker-note injection — uncomment if a script file exists
589
+ # notes = parse_notes('speaker_script.md')
590
+ # for i, slide in enumerate(slides):
591
+ # num = i + 1
592
+ # if num in notes:
593
+ # slide.notes_slide.notes_text_frame.text = notes[num]
594
+
595
+ out = 'demo_slide_deck.pptx'
596
+ prs.save(out)
597
+ sz = os.path.getsize(out) / 1024
598
+ print(f'\nDone: {out}')
599
+ print(f' Slides: {total}')
600
+ print(f' Size: {sz:.0f} KB, Editable: YES')
601
+
602
+
603
+ if __name__ == '__main__':
604
+ main()